Multiple sequence alignment - TraesCS6A01G015200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G015200 chr6A 100.000 2633 0 0 1 2633 7396064 7393432 0.000000e+00 4863.0
1 TraesCS6A01G015200 chr6A 78.049 1066 198 34 608 1655 15873053 15872006 7.950000e-180 640.0
2 TraesCS6A01G015200 chr6B 91.211 1900 100 16 310 2151 13951834 13949944 0.000000e+00 2521.0
3 TraesCS6A01G015200 chr6B 83.813 1217 169 12 597 1791 39311205 39312415 0.000000e+00 1131.0
4 TraesCS6A01G015200 chr6B 81.142 1384 217 28 608 1960 14454892 14453522 0.000000e+00 1070.0
5 TraesCS6A01G015200 chr6B 83.681 1054 159 12 599 1645 39326270 39327317 0.000000e+00 981.0
6 TraesCS6A01G015200 chr6B 80.787 1067 188 15 597 1655 14323654 14324711 0.000000e+00 819.0
7 TraesCS6A01G015200 chr6B 78.249 1062 202 23 608 1655 21458846 21459892 0.000000e+00 654.0
8 TraesCS6A01G015200 chr6B 94.326 141 6 2 2341 2479 13948391 13948251 5.710000e-52 215.0
9 TraesCS6A01G015200 chr6B 81.921 177 14 5 2247 2417 39313819 39313983 1.640000e-27 134.0
10 TraesCS6A01G015200 chr6B 82.895 76 5 6 2206 2276 14451700 14451628 7.870000e-06 62.1
11 TraesCS6A01G015200 chr6B 82.895 76 5 6 2206 2276 14451803 14451731 7.870000e-06 62.1
12 TraesCS6A01G015200 chr6D 90.601 1447 69 25 249 1650 7485037 7483613 0.000000e+00 1857.0
13 TraesCS6A01G015200 chr6D 90.413 1137 92 5 597 1716 7477041 7475905 0.000000e+00 1480.0
14 TraesCS6A01G015200 chr6D 82.416 1308 178 24 530 1791 7651576 7652877 0.000000e+00 1094.0
15 TraesCS6A01G015200 chr6D 82.011 1223 174 24 597 1793 7423940 7422738 0.000000e+00 998.0
16 TraesCS6A01G015200 chr6D 78.839 1068 208 18 597 1655 8894176 8895234 0.000000e+00 704.0
17 TraesCS6A01G015200 chr6D 78.122 1065 210 23 597 1650 14727196 14726144 0.000000e+00 654.0
18 TraesCS6A01G015200 chr6D 95.745 47 2 0 2158 2204 368780352 368780398 2.810000e-10 76.8
19 TraesCS6A01G015200 chr3B 78.999 1119 210 24 548 1652 761047673 761046566 0.000000e+00 741.0
20 TraesCS6A01G015200 chr3D 77.736 1069 218 19 597 1655 33330370 33329312 2.860000e-179 638.0
21 TraesCS6A01G015200 chr1D 97.826 46 1 0 2163 2208 81489 81534 2.170000e-11 80.5
22 TraesCS6A01G015200 chr2D 95.833 48 2 0 2158 2205 54674280 54674327 7.810000e-11 78.7
23 TraesCS6A01G015200 chr3A 95.745 47 1 1 2161 2207 651513221 651513176 1.010000e-09 75.0
24 TraesCS6A01G015200 chr2B 97.674 43 1 0 2161 2203 576653164 576653122 1.010000e-09 75.0
25 TraesCS6A01G015200 chr2B 95.556 45 1 1 2160 2203 85321937 85321981 1.310000e-08 71.3
26 TraesCS6A01G015200 chr4D 95.652 46 1 1 2158 2203 101653258 101653214 3.640000e-09 73.1
27 TraesCS6A01G015200 chr4B 95.652 46 1 1 2158 2203 145804185 145804141 3.640000e-09 73.1
28 TraesCS6A01G015200 chrUn 95.349 43 2 0 2161 2203 96234298 96234256 4.700000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G015200 chr6A 7393432 7396064 2632 True 4863.000000 4863 100.000000 1 2633 1 chr6A.!!$R1 2632
1 TraesCS6A01G015200 chr6A 15872006 15873053 1047 True 640.000000 640 78.049000 608 1655 1 chr6A.!!$R2 1047
2 TraesCS6A01G015200 chr6B 13948251 13951834 3583 True 1368.000000 2521 92.768500 310 2479 2 chr6B.!!$R1 2169
3 TraesCS6A01G015200 chr6B 39326270 39327317 1047 False 981.000000 981 83.681000 599 1645 1 chr6B.!!$F3 1046
4 TraesCS6A01G015200 chr6B 14323654 14324711 1057 False 819.000000 819 80.787000 597 1655 1 chr6B.!!$F1 1058
5 TraesCS6A01G015200 chr6B 21458846 21459892 1046 False 654.000000 654 78.249000 608 1655 1 chr6B.!!$F2 1047
6 TraesCS6A01G015200 chr6B 39311205 39313983 2778 False 632.500000 1131 82.867000 597 2417 2 chr6B.!!$F4 1820
7 TraesCS6A01G015200 chr6B 14451628 14454892 3264 True 398.066667 1070 82.310667 608 2276 3 chr6B.!!$R2 1668
8 TraesCS6A01G015200 chr6D 7483613 7485037 1424 True 1857.000000 1857 90.601000 249 1650 1 chr6D.!!$R3 1401
9 TraesCS6A01G015200 chr6D 7475905 7477041 1136 True 1480.000000 1480 90.413000 597 1716 1 chr6D.!!$R2 1119
10 TraesCS6A01G015200 chr6D 7651576 7652877 1301 False 1094.000000 1094 82.416000 530 1791 1 chr6D.!!$F1 1261
11 TraesCS6A01G015200 chr6D 7422738 7423940 1202 True 998.000000 998 82.011000 597 1793 1 chr6D.!!$R1 1196
12 TraesCS6A01G015200 chr6D 8894176 8895234 1058 False 704.000000 704 78.839000 597 1655 1 chr6D.!!$F2 1058
13 TraesCS6A01G015200 chr6D 14726144 14727196 1052 True 654.000000 654 78.122000 597 1650 1 chr6D.!!$R4 1053
14 TraesCS6A01G015200 chr3B 761046566 761047673 1107 True 741.000000 741 78.999000 548 1652 1 chr3B.!!$R1 1104
15 TraesCS6A01G015200 chr3D 33329312 33330370 1058 True 638.000000 638 77.736000 597 1655 1 chr3D.!!$R1 1058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 562 0.535328 CTCCGGAGATGCGTCCTCTA 60.535 60.0 28.21 0.0 34.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 5369 0.17576 TCCGCTTGACAGGCAGTATC 59.824 55.0 10.44 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.752661 TTTTTGCGGTGGTACATAAGAC 57.247 40.909 0.00 0.00 44.52 3.01
35 36 3.404224 TTTGCGGTGGTACATAAGACA 57.596 42.857 0.00 0.00 44.52 3.41
36 37 3.620427 TTGCGGTGGTACATAAGACAT 57.380 42.857 0.00 0.00 44.52 3.06
37 38 3.620427 TGCGGTGGTACATAAGACATT 57.380 42.857 0.00 0.00 44.52 2.71
38 39 3.527533 TGCGGTGGTACATAAGACATTC 58.472 45.455 0.00 0.00 44.52 2.67
39 40 3.196901 TGCGGTGGTACATAAGACATTCT 59.803 43.478 0.00 0.00 44.52 2.40
40 41 4.189231 GCGGTGGTACATAAGACATTCTT 58.811 43.478 0.00 0.00 44.52 2.52
41 42 5.105269 TGCGGTGGTACATAAGACATTCTTA 60.105 40.000 0.00 0.00 44.52 2.10
43 44 7.149973 GCGGTGGTACATAAGACATTCTTATA 58.850 38.462 7.89 0.00 45.18 0.98
44 45 7.817962 GCGGTGGTACATAAGACATTCTTATAT 59.182 37.037 7.89 0.89 45.18 0.86
45 46 9.140286 CGGTGGTACATAAGACATTCTTATATG 57.860 37.037 7.89 3.42 45.18 1.78
46 47 9.998106 GGTGGTACATAAGACATTCTTATATGT 57.002 33.333 7.89 8.29 45.18 2.29
66 67 5.132897 TGTGAATGATTTACCCTTGTTGC 57.867 39.130 0.00 0.00 0.00 4.17
67 68 4.586421 TGTGAATGATTTACCCTTGTTGCA 59.414 37.500 0.00 0.00 0.00 4.08
68 69 5.069648 TGTGAATGATTTACCCTTGTTGCAA 59.930 36.000 0.00 0.00 0.00 4.08
69 70 5.988561 GTGAATGATTTACCCTTGTTGCAAA 59.011 36.000 0.00 0.00 0.00 3.68
84 85 5.315118 GTTGCAAACTCAAAGTTACATGC 57.685 39.130 0.00 7.65 45.32 4.06
85 86 3.626977 TGCAAACTCAAAGTTACATGCG 58.373 40.909 9.27 0.00 40.48 4.73
86 87 3.313803 TGCAAACTCAAAGTTACATGCGA 59.686 39.130 9.27 0.00 40.48 5.10
87 88 4.023279 TGCAAACTCAAAGTTACATGCGAT 60.023 37.500 9.27 0.00 40.48 4.58
88 89 5.180304 TGCAAACTCAAAGTTACATGCGATA 59.820 36.000 9.27 0.00 40.48 2.92
89 90 6.128035 TGCAAACTCAAAGTTACATGCGATAT 60.128 34.615 9.27 0.00 40.48 1.63
90 91 7.065204 TGCAAACTCAAAGTTACATGCGATATA 59.935 33.333 9.27 0.00 40.48 0.86
91 92 8.070171 GCAAACTCAAAGTTACATGCGATATAT 58.930 33.333 0.00 0.00 37.47 0.86
95 96 8.873830 ACTCAAAGTTACATGCGATATATATGC 58.126 33.333 0.00 5.25 0.00 3.14
96 97 7.894847 TCAAAGTTACATGCGATATATATGCG 58.105 34.615 0.00 5.27 0.00 4.73
97 98 7.544217 TCAAAGTTACATGCGATATATATGCGT 59.456 33.333 0.00 3.40 0.00 5.24
102 103 5.717038 CATGCGATATATATGCGTGGAAA 57.283 39.130 20.41 4.51 40.92 3.13
103 104 6.291067 CATGCGATATATATGCGTGGAAAT 57.709 37.500 20.41 5.95 40.92 2.17
104 105 7.406799 CATGCGATATATATGCGTGGAAATA 57.593 36.000 20.41 3.56 40.92 1.40
105 106 7.504818 CATGCGATATATATGCGTGGAAATAG 58.495 38.462 20.41 4.96 40.92 1.73
106 107 6.801575 TGCGATATATATGCGTGGAAATAGA 58.198 36.000 0.00 0.00 0.00 1.98
107 108 7.433680 TGCGATATATATGCGTGGAAATAGAT 58.566 34.615 0.00 0.00 0.00 1.98
108 109 8.573035 TGCGATATATATGCGTGGAAATAGATA 58.427 33.333 0.00 0.00 0.00 1.98
109 110 9.066939 GCGATATATATGCGTGGAAATAGATAG 57.933 37.037 0.00 0.00 0.00 2.08
115 116 8.988064 ATATGCGTGGAAATAGATAGTACTTG 57.012 34.615 0.00 0.00 0.00 3.16
116 117 6.459670 TGCGTGGAAATAGATAGTACTTGA 57.540 37.500 0.00 0.00 0.00 3.02
117 118 6.504398 TGCGTGGAAATAGATAGTACTTGAG 58.496 40.000 0.00 0.00 0.00 3.02
118 119 6.096423 TGCGTGGAAATAGATAGTACTTGAGT 59.904 38.462 0.00 0.00 0.00 3.41
119 120 7.283807 TGCGTGGAAATAGATAGTACTTGAGTA 59.716 37.037 0.00 0.00 0.00 2.59
120 121 7.804129 GCGTGGAAATAGATAGTACTTGAGTAG 59.196 40.741 0.00 0.00 0.00 2.57
121 122 8.838365 CGTGGAAATAGATAGTACTTGAGTAGT 58.162 37.037 0.00 4.13 41.04 2.73
122 123 9.953697 GTGGAAATAGATAGTACTTGAGTAGTG 57.046 37.037 0.00 0.00 37.73 2.74
123 124 9.916360 TGGAAATAGATAGTACTTGAGTAGTGA 57.084 33.333 0.00 0.00 37.73 3.41
129 130 8.445275 AGATAGTACTTGAGTAGTGAGATGTG 57.555 38.462 0.00 0.00 37.73 3.21
130 131 5.317733 AGTACTTGAGTAGTGAGATGTGC 57.682 43.478 0.00 0.00 37.73 4.57
131 132 4.767409 AGTACTTGAGTAGTGAGATGTGCA 59.233 41.667 0.00 0.00 37.73 4.57
132 133 4.185467 ACTTGAGTAGTGAGATGTGCAG 57.815 45.455 0.00 0.00 35.19 4.41
133 134 3.576118 ACTTGAGTAGTGAGATGTGCAGT 59.424 43.478 0.00 0.00 35.19 4.40
134 135 4.039730 ACTTGAGTAGTGAGATGTGCAGTT 59.960 41.667 0.00 0.00 35.19 3.16
135 136 4.607293 TGAGTAGTGAGATGTGCAGTTT 57.393 40.909 0.00 0.00 0.00 2.66
136 137 4.960938 TGAGTAGTGAGATGTGCAGTTTT 58.039 39.130 0.00 0.00 0.00 2.43
137 138 4.751600 TGAGTAGTGAGATGTGCAGTTTTG 59.248 41.667 0.00 0.00 0.00 2.44
138 139 4.708177 AGTAGTGAGATGTGCAGTTTTGT 58.292 39.130 0.00 0.00 0.00 2.83
139 140 5.853936 AGTAGTGAGATGTGCAGTTTTGTA 58.146 37.500 0.00 0.00 0.00 2.41
140 141 6.288294 AGTAGTGAGATGTGCAGTTTTGTAA 58.712 36.000 0.00 0.00 0.00 2.41
141 142 5.424121 AGTGAGATGTGCAGTTTTGTAAC 57.576 39.130 0.00 0.00 34.36 2.50
142 143 4.881273 AGTGAGATGTGCAGTTTTGTAACA 59.119 37.500 0.00 0.00 36.70 2.41
143 144 5.532406 AGTGAGATGTGCAGTTTTGTAACAT 59.468 36.000 0.00 0.00 36.83 2.71
144 145 5.853282 GTGAGATGTGCAGTTTTGTAACATC 59.147 40.000 6.07 6.07 43.44 3.06
145 146 5.034554 AGATGTGCAGTTTTGTAACATCG 57.965 39.130 8.08 0.00 45.34 3.84
146 147 4.515191 AGATGTGCAGTTTTGTAACATCGT 59.485 37.500 8.08 0.00 45.34 3.73
147 148 3.946402 TGTGCAGTTTTGTAACATCGTG 58.054 40.909 0.00 0.00 36.70 4.35
148 149 3.242903 TGTGCAGTTTTGTAACATCGTGG 60.243 43.478 0.00 0.00 36.70 4.94
149 150 2.946329 TGCAGTTTTGTAACATCGTGGT 59.054 40.909 0.00 0.00 36.70 4.16
150 151 3.242903 TGCAGTTTTGTAACATCGTGGTG 60.243 43.478 0.00 0.00 36.70 4.17
151 152 3.242936 GCAGTTTTGTAACATCGTGGTGT 60.243 43.478 0.00 0.00 36.70 4.16
152 153 4.523813 CAGTTTTGTAACATCGTGGTGTC 58.476 43.478 0.00 0.00 36.70 3.67
153 154 4.034626 CAGTTTTGTAACATCGTGGTGTCA 59.965 41.667 0.00 0.00 36.70 3.58
154 155 4.034742 AGTTTTGTAACATCGTGGTGTCAC 59.965 41.667 0.00 0.00 37.34 3.67
155 156 2.892784 TGTAACATCGTGGTGTCACA 57.107 45.000 5.12 0.00 43.79 3.58
156 157 2.749776 TGTAACATCGTGGTGTCACAG 58.250 47.619 5.12 0.00 43.79 3.66
157 158 2.101750 TGTAACATCGTGGTGTCACAGT 59.898 45.455 5.12 0.00 43.79 3.55
158 159 2.325583 AACATCGTGGTGTCACAGTT 57.674 45.000 5.12 0.00 43.79 3.16
159 160 2.325583 ACATCGTGGTGTCACAGTTT 57.674 45.000 5.12 0.00 43.79 2.66
160 161 2.639065 ACATCGTGGTGTCACAGTTTT 58.361 42.857 5.12 0.00 43.79 2.43
161 162 2.612212 ACATCGTGGTGTCACAGTTTTC 59.388 45.455 5.12 0.00 43.79 2.29
162 163 2.388310 TCGTGGTGTCACAGTTTTCA 57.612 45.000 5.12 0.00 43.79 2.69
163 164 2.912771 TCGTGGTGTCACAGTTTTCAT 58.087 42.857 5.12 0.00 43.79 2.57
164 165 2.869801 TCGTGGTGTCACAGTTTTCATC 59.130 45.455 5.12 0.00 43.79 2.92
165 166 2.611751 CGTGGTGTCACAGTTTTCATCA 59.388 45.455 5.12 0.00 43.79 3.07
166 167 3.250762 CGTGGTGTCACAGTTTTCATCAT 59.749 43.478 5.12 0.00 43.79 2.45
167 168 4.261155 CGTGGTGTCACAGTTTTCATCATT 60.261 41.667 5.12 0.00 43.79 2.57
168 169 5.215160 GTGGTGTCACAGTTTTCATCATTC 58.785 41.667 5.12 0.00 43.13 2.67
169 170 4.886489 TGGTGTCACAGTTTTCATCATTCA 59.114 37.500 5.12 0.00 0.00 2.57
170 171 5.359292 TGGTGTCACAGTTTTCATCATTCAA 59.641 36.000 5.12 0.00 0.00 2.69
171 172 5.916883 GGTGTCACAGTTTTCATCATTCAAG 59.083 40.000 5.12 0.00 0.00 3.02
172 173 6.238731 GGTGTCACAGTTTTCATCATTCAAGA 60.239 38.462 5.12 0.00 0.00 3.02
173 174 7.195646 GTGTCACAGTTTTCATCATTCAAGAA 58.804 34.615 0.00 0.00 0.00 2.52
174 175 7.701924 GTGTCACAGTTTTCATCATTCAAGAAA 59.298 33.333 0.00 0.00 0.00 2.52
175 176 7.701924 TGTCACAGTTTTCATCATTCAAGAAAC 59.298 33.333 0.00 0.00 31.60 2.78
176 177 7.917505 GTCACAGTTTTCATCATTCAAGAAACT 59.082 33.333 0.00 0.00 31.60 2.66
177 178 9.119418 TCACAGTTTTCATCATTCAAGAAACTA 57.881 29.630 0.00 0.00 31.60 2.24
178 179 9.173939 CACAGTTTTCATCATTCAAGAAACTAC 57.826 33.333 0.00 0.00 31.60 2.73
179 180 9.125026 ACAGTTTTCATCATTCAAGAAACTACT 57.875 29.630 0.00 0.00 31.60 2.57
180 181 9.956720 CAGTTTTCATCATTCAAGAAACTACTT 57.043 29.630 0.00 0.00 31.60 2.24
182 183 9.950680 GTTTTCATCATTCAAGAAACTACTTCA 57.049 29.630 0.00 0.00 36.40 3.02
185 186 8.853077 TCATCATTCAAGAAACTACTTCATGT 57.147 30.769 0.00 0.00 34.89 3.21
186 187 9.288576 TCATCATTCAAGAAACTACTTCATGTT 57.711 29.630 0.00 0.00 34.89 2.71
244 245 8.725405 ATTTTATATGTAACATCGTGGTGTCA 57.275 30.769 0.00 0.00 0.00 3.58
245 246 8.549338 TTTTATATGTAACATCGTGGTGTCAA 57.451 30.769 0.00 0.00 0.00 3.18
246 247 8.549338 TTTATATGTAACATCGTGGTGTCAAA 57.451 30.769 0.00 0.00 0.00 2.69
247 248 6.662414 ATATGTAACATCGTGGTGTCAAAG 57.338 37.500 0.00 0.00 0.00 2.77
275 276 7.172532 TCTCACATAATTACTGTTTGAAAGCGT 59.827 33.333 0.00 0.00 0.00 5.07
284 285 4.035208 ACTGTTTGAAAGCGTTTAGTCCTG 59.965 41.667 0.00 0.00 0.00 3.86
304 305 4.444733 CCTGTATATGATTCAGGTGTGGCA 60.445 45.833 4.43 0.00 41.38 4.92
306 307 3.939740 ATATGATTCAGGTGTGGCACT 57.060 42.857 19.83 0.00 34.40 4.40
308 309 3.719268 ATGATTCAGGTGTGGCACTAA 57.281 42.857 19.83 5.87 34.40 2.24
361 382 9.681062 TCTAAAGGAGAAGAGAAAGAAAACAAA 57.319 29.630 0.00 0.00 0.00 2.83
391 412 1.103398 CCGATTAAAGCCCAGCCCAG 61.103 60.000 0.00 0.00 0.00 4.45
408 429 2.937469 CAGTGCTACAGAGACTGGAG 57.063 55.000 6.63 6.63 44.75 3.86
417 438 2.760092 ACAGAGACTGGAGCAGAGAATC 59.240 50.000 0.00 0.00 35.51 2.52
538 562 0.535328 CTCCGGAGATGCGTCCTCTA 60.535 60.000 28.21 0.00 34.00 2.43
576 617 1.227664 CTCTCTCCACCGCCTCCTA 59.772 63.158 0.00 0.00 0.00 2.94
692 751 2.606519 CCACCTCAAGTCCCCCGA 60.607 66.667 0.00 0.00 0.00 5.14
939 998 1.199615 GCTCCTACCTGCCTCTCTTT 58.800 55.000 0.00 0.00 0.00 2.52
1002 1067 1.095600 TCCTTCTCTCGGTCGACATG 58.904 55.000 18.91 9.36 0.00 3.21
1322 1387 0.890996 GTGCTGAGGTGGTCAAAGGG 60.891 60.000 0.00 0.00 33.60 3.95
1351 1416 1.587054 CGCAAGTCCGAGTTCCTCT 59.413 57.895 0.00 0.00 0.00 3.69
1820 2309 2.851195 TGGTGGAGAAGAAAGCTTGAC 58.149 47.619 0.00 0.00 33.61 3.18
1821 2310 2.155279 GGTGGAGAAGAAAGCTTGACC 58.845 52.381 0.00 0.00 33.61 4.02
1973 2557 7.255451 CGGAAAATATATTGCTGTTGGGTGTAT 60.255 37.037 0.00 0.00 0.00 2.29
1984 2568 6.717540 TGCTGTTGGGTGTATGTTTACTTTAT 59.282 34.615 0.00 0.00 0.00 1.40
1985 2569 7.027161 GCTGTTGGGTGTATGTTTACTTTATG 58.973 38.462 0.00 0.00 0.00 1.90
1986 2570 6.915349 TGTTGGGTGTATGTTTACTTTATGC 58.085 36.000 0.00 0.00 0.00 3.14
2006 2590 2.354103 GCCTTTGATTTCTTGGCCCTTC 60.354 50.000 0.00 0.00 37.81 3.46
2014 2598 1.348064 TCTTGGCCCTTCTTCTTCGA 58.652 50.000 0.00 0.00 0.00 3.71
2032 2616 5.408604 TCTTCGAAGGCTGATTAGTTTTGTC 59.591 40.000 24.37 0.00 0.00 3.18
2054 2638 7.173032 TGTCACTAGATCTTGTAGTTGACCTA 58.827 38.462 16.98 3.77 32.89 3.08
2055 2639 7.120873 TGTCACTAGATCTTGTAGTTGACCTAC 59.879 40.741 16.98 0.00 45.36 3.18
2056 2640 7.337436 GTCACTAGATCTTGTAGTTGACCTACT 59.663 40.741 9.54 0.00 45.36 2.57
2058 2642 8.524487 CACTAGATCTTGTAGTTGACCTACTTT 58.476 37.037 9.54 0.00 45.36 2.66
2059 2643 9.091220 ACTAGATCTTGTAGTTGACCTACTTTT 57.909 33.333 8.12 0.00 45.36 2.27
2060 2644 9.360093 CTAGATCTTGTAGTTGACCTACTTTTG 57.640 37.037 0.00 0.00 45.36 2.44
2061 2645 6.651225 AGATCTTGTAGTTGACCTACTTTTGC 59.349 38.462 0.00 0.00 45.36 3.68
2062 2646 5.925509 TCTTGTAGTTGACCTACTTTTGCT 58.074 37.500 0.00 0.00 45.36 3.91
2063 2647 7.058023 TCTTGTAGTTGACCTACTTTTGCTA 57.942 36.000 0.00 0.00 45.36 3.49
2064 2648 7.152645 TCTTGTAGTTGACCTACTTTTGCTAG 58.847 38.462 0.00 0.00 45.36 3.42
2069 2653 5.763698 AGTTGACCTACTTTTGCTAGGAAAC 59.236 40.000 9.15 6.96 35.23 2.78
2071 2655 5.686753 TGACCTACTTTTGCTAGGAAACAA 58.313 37.500 9.15 0.00 35.23 2.83
2104 2688 4.420522 AAACGTAACCAAAGTGGGAGTA 57.579 40.909 0.00 0.00 43.37 2.59
2107 2691 2.564062 CGTAACCAAAGTGGGAGTAGGA 59.436 50.000 0.00 0.00 43.37 2.94
2142 2726 7.692460 TCAGCAAATGAAGTTGTCTTATCAT 57.308 32.000 0.00 0.00 34.02 2.45
2175 3583 9.286946 CTTAGGTATAGACTAGTGTCAAAAACG 57.713 37.037 0.00 0.00 45.20 3.60
2178 3586 6.253083 GGTATAGACTAGTGTCAAAAACGCTC 59.747 42.308 0.00 0.00 45.69 5.03
2181 3589 4.508124 AGACTAGTGTCAAAAACGCTCTTG 59.492 41.667 0.00 0.00 45.69 3.02
2182 3590 4.189231 ACTAGTGTCAAAAACGCTCTTGT 58.811 39.130 0.00 0.00 45.69 3.16
2184 3592 5.989777 ACTAGTGTCAAAAACGCTCTTGTAT 59.010 36.000 0.00 0.00 45.69 2.29
2185 3593 5.751243 AGTGTCAAAAACGCTCTTGTATT 57.249 34.783 0.00 0.00 45.69 1.89
2191 3599 5.124776 TCAAAAACGCTCTTGTATTATGGGG 59.875 40.000 0.00 0.00 0.00 4.96
2203 3611 0.761702 TTATGGGGCGGAGGGAGTAC 60.762 60.000 0.00 0.00 0.00 2.73
2236 5367 3.949842 AAAGCTGATTTTTCCTGAGCC 57.050 42.857 0.00 0.00 0.00 4.70
2238 5369 2.444421 AGCTGATTTTTCCTGAGCCTG 58.556 47.619 0.00 0.00 0.00 4.85
2239 5370 2.040813 AGCTGATTTTTCCTGAGCCTGA 59.959 45.455 0.00 0.00 0.00 3.86
2240 5371 3.022406 GCTGATTTTTCCTGAGCCTGAT 58.978 45.455 0.00 0.00 0.00 2.90
2242 5373 4.036144 GCTGATTTTTCCTGAGCCTGATAC 59.964 45.833 0.00 0.00 0.00 2.24
2243 5374 5.435291 CTGATTTTTCCTGAGCCTGATACT 58.565 41.667 0.00 0.00 0.00 2.12
2244 5375 5.188434 TGATTTTTCCTGAGCCTGATACTG 58.812 41.667 0.00 0.00 0.00 2.74
2245 5376 2.698855 TTTCCTGAGCCTGATACTGC 57.301 50.000 0.00 0.00 0.00 4.40
2256 5391 0.108186 TGATACTGCCTGTCAAGCGG 60.108 55.000 0.40 0.40 42.55 5.52
2281 5416 6.996509 AGCATGTCTTGTTGTATTTTGGATT 58.003 32.000 0.00 0.00 0.00 3.01
2303 5440 3.402110 TGCCACACTCACAGTATTTGAG 58.598 45.455 0.00 0.00 45.21 3.02
2304 5441 3.070878 TGCCACACTCACAGTATTTGAGA 59.929 43.478 6.37 0.00 42.81 3.27
2305 5442 3.433615 GCCACACTCACAGTATTTGAGAC 59.566 47.826 6.37 0.00 42.81 3.36
2307 5444 4.299155 CACACTCACAGTATTTGAGACGT 58.701 43.478 6.37 0.00 42.81 4.34
2308 5445 4.148871 CACACTCACAGTATTTGAGACGTG 59.851 45.833 6.37 8.70 42.81 4.49
2309 5446 4.202121 ACACTCACAGTATTTGAGACGTGT 60.202 41.667 6.37 0.00 42.81 4.49
2310 5447 4.383052 CACTCACAGTATTTGAGACGTGTC 59.617 45.833 5.61 5.61 42.81 3.67
2311 5448 4.278669 ACTCACAGTATTTGAGACGTGTCT 59.721 41.667 14.38 1.35 42.81 3.41
2312 5449 5.196341 TCACAGTATTTGAGACGTGTCTT 57.804 39.130 14.38 1.81 40.61 3.01
2313 5450 5.597806 TCACAGTATTTGAGACGTGTCTTT 58.402 37.500 14.38 1.46 40.61 2.52
2314 5451 5.462068 TCACAGTATTTGAGACGTGTCTTTG 59.538 40.000 14.38 5.86 40.61 2.77
2315 5452 5.234329 CACAGTATTTGAGACGTGTCTTTGT 59.766 40.000 14.38 6.42 40.61 2.83
2316 5453 5.462398 ACAGTATTTGAGACGTGTCTTTGTC 59.538 40.000 14.38 2.52 40.61 3.18
2318 5455 6.861572 CAGTATTTGAGACGTGTCTTTGTCTA 59.138 38.462 14.38 0.00 45.09 2.59
2324 5461 6.103997 TGAGACGTGTCTTTGTCTAAAGTTT 58.896 36.000 14.38 0.00 45.09 2.66
2325 5462 6.592607 TGAGACGTGTCTTTGTCTAAAGTTTT 59.407 34.615 14.38 0.00 45.09 2.43
2422 5563 0.321919 GGCAGCTGTGATGTCCTTCA 60.322 55.000 16.64 0.00 0.00 3.02
2427 5568 4.256110 CAGCTGTGATGTCCTTCATGTTA 58.744 43.478 5.25 0.00 36.83 2.41
2440 5581 4.096984 CCTTCATGTTATGTTCCTGGCTTC 59.903 45.833 0.00 0.00 0.00 3.86
2469 5612 3.717294 GGTCCGTGGTGCCTGGAT 61.717 66.667 0.00 0.00 33.63 3.41
2476 5619 2.520260 GGTGCCTGGATGATGCCC 60.520 66.667 0.00 0.00 0.00 5.36
2479 5622 2.203451 GCCTGGATGATGCCCTGG 60.203 66.667 0.00 0.00 43.32 4.45
2480 5623 2.203451 CCTGGATGATGCCCTGGC 60.203 66.667 0.00 0.00 36.26 4.85
2490 5633 2.753043 GCCCTGGCATCTGGTGTG 60.753 66.667 2.58 0.00 41.49 3.82
2491 5634 2.759114 CCCTGGCATCTGGTGTGT 59.241 61.111 0.00 0.00 0.00 3.72
2492 5635 1.990424 CCCTGGCATCTGGTGTGTA 59.010 57.895 0.00 0.00 0.00 2.90
2493 5636 0.548031 CCCTGGCATCTGGTGTGTAT 59.452 55.000 0.00 0.00 0.00 2.29
2494 5637 1.671979 CCTGGCATCTGGTGTGTATG 58.328 55.000 0.00 0.00 0.00 2.39
2495 5638 1.065199 CCTGGCATCTGGTGTGTATGT 60.065 52.381 0.00 0.00 0.00 2.29
2496 5639 2.170397 CCTGGCATCTGGTGTGTATGTA 59.830 50.000 0.00 0.00 0.00 2.29
2497 5640 3.198068 CTGGCATCTGGTGTGTATGTAC 58.802 50.000 0.00 0.00 0.00 2.90
2498 5641 2.569404 TGGCATCTGGTGTGTATGTACA 59.431 45.455 0.00 0.00 0.00 2.90
2499 5642 3.198068 GGCATCTGGTGTGTATGTACAG 58.802 50.000 0.33 0.00 36.78 2.74
2500 5643 2.609459 GCATCTGGTGTGTATGTACAGC 59.391 50.000 0.33 0.00 46.35 4.40
2501 5644 3.198068 CATCTGGTGTGTATGTACAGCC 58.802 50.000 0.33 0.76 45.77 4.85
2502 5645 2.536066 TCTGGTGTGTATGTACAGCCT 58.464 47.619 0.33 0.00 45.77 4.58
2503 5646 2.233676 TCTGGTGTGTATGTACAGCCTG 59.766 50.000 0.33 11.63 45.77 4.85
2504 5647 1.338674 TGGTGTGTATGTACAGCCTGC 60.339 52.381 0.33 0.00 45.77 4.85
2505 5648 0.999406 GTGTGTATGTACAGCCTGCG 59.001 55.000 0.33 0.00 36.78 5.18
2506 5649 0.739462 TGTGTATGTACAGCCTGCGC 60.739 55.000 0.00 0.00 36.78 6.09
2507 5650 1.153449 TGTATGTACAGCCTGCGCC 60.153 57.895 4.18 0.00 34.57 6.53
2508 5651 1.144057 GTATGTACAGCCTGCGCCT 59.856 57.895 4.18 0.00 34.57 5.52
2509 5652 1.143838 TATGTACAGCCTGCGCCTG 59.856 57.895 4.18 7.89 34.57 4.85
2510 5653 2.310327 TATGTACAGCCTGCGCCTGG 62.310 60.000 15.21 13.49 34.57 4.45
2511 5654 4.082523 GTACAGCCTGCGCCTGGA 62.083 66.667 18.93 6.84 34.57 3.86
2512 5655 4.082523 TACAGCCTGCGCCTGGAC 62.083 66.667 18.93 10.68 34.57 4.02
2515 5658 4.039092 AGCCTGCGCCTGGACAAT 62.039 61.111 18.93 0.55 34.57 2.71
2516 5659 3.818787 GCCTGCGCCTGGACAATG 61.819 66.667 18.93 0.00 0.00 2.82
2517 5660 3.818787 CCTGCGCCTGGACAATGC 61.819 66.667 4.18 0.00 0.00 3.56
2521 5664 3.398920 CGCCTGGACAATGCGTAG 58.601 61.111 0.00 0.00 43.12 3.51
2522 5665 1.447838 CGCCTGGACAATGCGTAGT 60.448 57.895 0.00 0.00 43.12 2.73
2523 5666 0.179121 CGCCTGGACAATGCGTAGTA 60.179 55.000 0.00 0.00 43.12 1.82
2524 5667 1.538204 CGCCTGGACAATGCGTAGTAT 60.538 52.381 0.00 0.00 43.12 2.12
2525 5668 1.867233 GCCTGGACAATGCGTAGTATG 59.133 52.381 0.00 0.00 29.61 2.39
2526 5669 2.741878 GCCTGGACAATGCGTAGTATGT 60.742 50.000 0.00 0.00 29.61 2.29
2527 5670 3.491964 GCCTGGACAATGCGTAGTATGTA 60.492 47.826 0.00 0.00 29.61 2.29
2528 5671 4.049186 CCTGGACAATGCGTAGTATGTAC 58.951 47.826 0.00 0.00 29.61 2.90
2529 5672 4.202121 CCTGGACAATGCGTAGTATGTACT 60.202 45.833 0.00 0.00 40.24 2.73
2530 5673 4.678622 TGGACAATGCGTAGTATGTACTG 58.321 43.478 3.00 0.00 37.10 2.74
2531 5674 4.399934 TGGACAATGCGTAGTATGTACTGA 59.600 41.667 3.00 0.00 37.10 3.41
2532 5675 5.068591 TGGACAATGCGTAGTATGTACTGAT 59.931 40.000 3.00 0.00 37.10 2.90
2533 5676 6.263617 TGGACAATGCGTAGTATGTACTGATA 59.736 38.462 3.00 0.00 37.10 2.15
2534 5677 7.143340 GGACAATGCGTAGTATGTACTGATAA 58.857 38.462 3.00 0.00 37.10 1.75
2535 5678 7.114529 GGACAATGCGTAGTATGTACTGATAAC 59.885 40.741 3.00 0.00 37.10 1.89
2536 5679 7.485810 ACAATGCGTAGTATGTACTGATAACA 58.514 34.615 3.00 0.00 37.10 2.41
2537 5680 8.141909 ACAATGCGTAGTATGTACTGATAACAT 58.858 33.333 3.00 0.00 40.57 2.71
2538 5681 8.639428 CAATGCGTAGTATGTACTGATAACATC 58.361 37.037 3.00 0.00 38.49 3.06
2539 5682 7.266922 TGCGTAGTATGTACTGATAACATCA 57.733 36.000 3.00 0.00 38.49 3.07
2540 5683 7.882179 TGCGTAGTATGTACTGATAACATCAT 58.118 34.615 3.00 0.00 38.85 2.45
2541 5684 8.021396 TGCGTAGTATGTACTGATAACATCATC 58.979 37.037 3.00 0.00 38.85 2.92
2542 5685 8.021396 GCGTAGTATGTACTGATAACATCATCA 58.979 37.037 3.00 0.00 38.85 3.07
2563 5706 9.730705 TCATCATCTACATTTTTCTTTCTCTGT 57.269 29.630 0.00 0.00 0.00 3.41
2566 5709 9.658799 TCATCTACATTTTTCTTTCTCTGTAGG 57.341 33.333 7.46 0.00 37.64 3.18
2567 5710 7.907214 TCTACATTTTTCTTTCTCTGTAGGC 57.093 36.000 7.46 0.00 37.64 3.93
2568 5711 7.680730 TCTACATTTTTCTTTCTCTGTAGGCT 58.319 34.615 7.46 0.00 37.64 4.58
2569 5712 6.566197 ACATTTTTCTTTCTCTGTAGGCTG 57.434 37.500 0.00 0.00 0.00 4.85
2570 5713 6.299141 ACATTTTTCTTTCTCTGTAGGCTGA 58.701 36.000 0.00 0.00 0.00 4.26
2571 5714 6.944862 ACATTTTTCTTTCTCTGTAGGCTGAT 59.055 34.615 0.00 0.00 0.00 2.90
2572 5715 6.808008 TTTTTCTTTCTCTGTAGGCTGATG 57.192 37.500 0.00 0.00 0.00 3.07
2573 5716 4.478206 TTCTTTCTCTGTAGGCTGATGG 57.522 45.455 0.00 0.00 0.00 3.51
2574 5717 2.169352 TCTTTCTCTGTAGGCTGATGGC 59.831 50.000 0.00 0.00 40.90 4.40
2575 5718 1.571955 TTCTCTGTAGGCTGATGGCA 58.428 50.000 0.00 0.00 44.01 4.92
2576 5719 1.798626 TCTCTGTAGGCTGATGGCAT 58.201 50.000 0.00 0.00 44.01 4.40
2577 5720 1.690893 TCTCTGTAGGCTGATGGCATC 59.309 52.381 20.52 20.52 44.01 3.91
2578 5721 1.693062 CTCTGTAGGCTGATGGCATCT 59.307 52.381 26.49 10.32 44.01 2.90
2579 5722 1.415289 TCTGTAGGCTGATGGCATCTG 59.585 52.381 26.49 25.67 44.01 2.90
2580 5723 0.471191 TGTAGGCTGATGGCATCTGG 59.529 55.000 28.41 20.99 44.01 3.86
2581 5724 0.471617 GTAGGCTGATGGCATCTGGT 59.528 55.000 28.41 14.38 44.01 4.00
2582 5725 0.471191 TAGGCTGATGGCATCTGGTG 59.529 55.000 28.41 17.06 44.01 4.17
2583 5726 1.077212 GGCTGATGGCATCTGGTGT 60.077 57.895 28.41 0.00 44.01 4.16
2584 5727 1.381928 GGCTGATGGCATCTGGTGTG 61.382 60.000 28.41 13.70 44.01 3.82
2585 5728 0.679002 GCTGATGGCATCTGGTGTGT 60.679 55.000 28.41 0.00 41.35 3.72
2586 5729 1.407299 GCTGATGGCATCTGGTGTGTA 60.407 52.381 28.41 7.87 41.35 2.90
2587 5730 2.747467 GCTGATGGCATCTGGTGTGTAT 60.747 50.000 28.41 0.00 41.35 2.29
2588 5731 2.876550 CTGATGGCATCTGGTGTGTATG 59.123 50.000 26.49 2.65 0.00 2.39
2589 5732 1.605710 GATGGCATCTGGTGTGTATGC 59.394 52.381 20.08 0.00 44.16 3.14
2590 5733 0.327591 TGGCATCTGGTGTGTATGCA 59.672 50.000 8.59 0.00 46.18 3.96
2591 5734 1.019673 GGCATCTGGTGTGTATGCAG 58.980 55.000 8.59 0.00 46.18 4.41
2592 5735 0.379669 GCATCTGGTGTGTATGCAGC 59.620 55.000 0.00 0.00 44.27 5.25
2593 5736 1.019673 CATCTGGTGTGTATGCAGCC 58.980 55.000 0.00 0.00 36.16 4.85
2594 5737 0.914644 ATCTGGTGTGTATGCAGCCT 59.085 50.000 0.00 0.00 36.16 4.58
2595 5738 0.250234 TCTGGTGTGTATGCAGCCTC 59.750 55.000 0.00 0.00 36.16 4.70
2596 5739 0.251354 CTGGTGTGTATGCAGCCTCT 59.749 55.000 0.00 0.00 36.16 3.69
2597 5740 0.692476 TGGTGTGTATGCAGCCTCTT 59.308 50.000 0.00 0.00 36.16 2.85
2598 5741 1.089920 GGTGTGTATGCAGCCTCTTG 58.910 55.000 0.00 0.00 0.00 3.02
2599 5742 1.611673 GGTGTGTATGCAGCCTCTTGT 60.612 52.381 0.00 0.00 0.00 3.16
2600 5743 2.154462 GTGTGTATGCAGCCTCTTGTT 58.846 47.619 0.00 0.00 0.00 2.83
2601 5744 3.334691 GTGTGTATGCAGCCTCTTGTTA 58.665 45.455 0.00 0.00 0.00 2.41
2602 5745 3.125316 GTGTGTATGCAGCCTCTTGTTAC 59.875 47.826 0.00 0.00 0.00 2.50
2603 5746 2.678336 GTGTATGCAGCCTCTTGTTACC 59.322 50.000 0.00 0.00 0.00 2.85
2604 5747 2.304470 TGTATGCAGCCTCTTGTTACCA 59.696 45.455 0.00 0.00 0.00 3.25
2605 5748 2.814805 ATGCAGCCTCTTGTTACCAT 57.185 45.000 0.00 0.00 0.00 3.55
2606 5749 1.825090 TGCAGCCTCTTGTTACCATG 58.175 50.000 0.00 0.00 0.00 3.66
2607 5750 1.098050 GCAGCCTCTTGTTACCATGG 58.902 55.000 11.19 11.19 0.00 3.66
2608 5751 1.614317 GCAGCCTCTTGTTACCATGGT 60.614 52.381 23.55 23.55 0.00 3.55
2609 5752 2.359900 CAGCCTCTTGTTACCATGGTC 58.640 52.381 23.76 8.88 0.00 4.02
2610 5753 2.026822 CAGCCTCTTGTTACCATGGTCT 60.027 50.000 23.76 5.83 0.00 3.85
2611 5754 2.237392 AGCCTCTTGTTACCATGGTCTC 59.763 50.000 23.76 15.97 0.00 3.36
2612 5755 2.237392 GCCTCTTGTTACCATGGTCTCT 59.763 50.000 23.76 0.00 0.00 3.10
2613 5756 3.307762 GCCTCTTGTTACCATGGTCTCTT 60.308 47.826 23.76 0.00 0.00 2.85
2614 5757 4.256920 CCTCTTGTTACCATGGTCTCTTG 58.743 47.826 23.76 10.56 0.00 3.02
2615 5758 3.674997 TCTTGTTACCATGGTCTCTTGC 58.325 45.455 23.76 6.96 0.00 4.01
2616 5759 3.072330 TCTTGTTACCATGGTCTCTTGCA 59.928 43.478 23.76 9.54 0.00 4.08
2617 5760 3.719268 TGTTACCATGGTCTCTTGCAT 57.281 42.857 23.76 0.00 0.00 3.96
2618 5761 4.835284 TGTTACCATGGTCTCTTGCATA 57.165 40.909 23.76 0.00 0.00 3.14
2619 5762 4.769688 TGTTACCATGGTCTCTTGCATAG 58.230 43.478 23.76 0.00 0.00 2.23
2620 5763 4.225042 TGTTACCATGGTCTCTTGCATAGT 59.775 41.667 23.76 0.00 0.00 2.12
2621 5764 5.423931 TGTTACCATGGTCTCTTGCATAGTA 59.576 40.000 23.76 0.00 0.00 1.82
2622 5765 6.099701 TGTTACCATGGTCTCTTGCATAGTAT 59.900 38.462 23.76 0.00 0.00 2.12
2623 5766 4.965814 ACCATGGTCTCTTGCATAGTATG 58.034 43.478 13.00 5.73 0.00 2.39
2624 5767 4.410228 ACCATGGTCTCTTGCATAGTATGT 59.590 41.667 13.00 0.00 0.00 2.29
2625 5768 5.602561 ACCATGGTCTCTTGCATAGTATGTA 59.397 40.000 13.00 4.35 0.00 2.29
2626 5769 5.928839 CCATGGTCTCTTGCATAGTATGTAC 59.071 44.000 11.73 0.00 0.00 2.90
2627 5770 6.239430 CCATGGTCTCTTGCATAGTATGTACT 60.239 42.308 11.73 0.00 40.24 2.73
2628 5771 6.149129 TGGTCTCTTGCATAGTATGTACTG 57.851 41.667 11.73 3.58 37.10 2.74
2629 5772 5.891551 TGGTCTCTTGCATAGTATGTACTGA 59.108 40.000 11.73 7.30 37.10 3.41
2630 5773 6.551227 TGGTCTCTTGCATAGTATGTACTGAT 59.449 38.462 11.73 0.00 37.10 2.90
2631 5774 7.724061 TGGTCTCTTGCATAGTATGTACTGATA 59.276 37.037 11.73 0.00 37.10 2.15
2632 5775 8.577296 GGTCTCTTGCATAGTATGTACTGATAA 58.423 37.037 11.73 0.00 37.10 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.135306 TGTCTTATGTACCACCGCAAAAA 58.865 39.130 0.00 0.00 0.00 1.94
14 15 3.741249 TGTCTTATGTACCACCGCAAAA 58.259 40.909 0.00 0.00 0.00 2.44
15 16 3.404224 TGTCTTATGTACCACCGCAAA 57.596 42.857 0.00 0.00 0.00 3.68
16 17 3.620427 ATGTCTTATGTACCACCGCAA 57.380 42.857 0.00 0.00 0.00 4.85
17 18 3.196901 AGAATGTCTTATGTACCACCGCA 59.803 43.478 0.00 0.00 0.00 5.69
18 19 3.793559 AGAATGTCTTATGTACCACCGC 58.206 45.455 0.00 0.00 0.00 5.68
19 20 9.140286 CATATAAGAATGTCTTATGTACCACCG 57.860 37.037 17.06 0.00 46.08 4.94
20 21 9.998106 ACATATAAGAATGTCTTATGTACCACC 57.002 33.333 17.06 0.00 46.08 4.61
40 41 8.629158 GCAACAAGGGTAAATCATTCACATATA 58.371 33.333 0.00 0.00 0.00 0.86
41 42 7.123997 TGCAACAAGGGTAAATCATTCACATAT 59.876 33.333 0.00 0.00 0.00 1.78
42 43 6.435591 TGCAACAAGGGTAAATCATTCACATA 59.564 34.615 0.00 0.00 0.00 2.29
43 44 5.245751 TGCAACAAGGGTAAATCATTCACAT 59.754 36.000 0.00 0.00 0.00 3.21
44 45 4.586421 TGCAACAAGGGTAAATCATTCACA 59.414 37.500 0.00 0.00 0.00 3.58
45 46 5.132897 TGCAACAAGGGTAAATCATTCAC 57.867 39.130 0.00 0.00 0.00 3.18
46 47 5.798125 TTGCAACAAGGGTAAATCATTCA 57.202 34.783 0.00 0.00 0.00 2.57
47 48 6.223120 AGTTTGCAACAAGGGTAAATCATTC 58.777 36.000 0.00 0.00 0.00 2.67
48 49 6.173427 AGTTTGCAACAAGGGTAAATCATT 57.827 33.333 0.00 0.00 0.00 2.57
49 50 5.304101 TGAGTTTGCAACAAGGGTAAATCAT 59.696 36.000 0.00 0.00 0.00 2.45
50 51 4.646945 TGAGTTTGCAACAAGGGTAAATCA 59.353 37.500 0.00 0.00 0.00 2.57
51 52 5.195001 TGAGTTTGCAACAAGGGTAAATC 57.805 39.130 0.00 0.00 0.00 2.17
52 53 5.606348 TTGAGTTTGCAACAAGGGTAAAT 57.394 34.783 0.00 0.00 0.00 1.40
53 54 5.046950 ACTTTGAGTTTGCAACAAGGGTAAA 60.047 36.000 12.83 3.50 0.00 2.01
54 55 4.464597 ACTTTGAGTTTGCAACAAGGGTAA 59.535 37.500 12.83 0.00 0.00 2.85
55 56 4.020543 ACTTTGAGTTTGCAACAAGGGTA 58.979 39.130 12.83 0.00 0.00 3.69
56 57 2.831526 ACTTTGAGTTTGCAACAAGGGT 59.168 40.909 12.83 8.38 0.00 4.34
57 58 3.525268 ACTTTGAGTTTGCAACAAGGG 57.475 42.857 12.83 7.92 0.00 3.95
58 59 5.406649 TGTAACTTTGAGTTTGCAACAAGG 58.593 37.500 0.00 3.65 39.51 3.61
59 60 6.508404 GCATGTAACTTTGAGTTTGCAACAAG 60.508 38.462 0.00 0.00 38.59 3.16
60 61 5.290643 GCATGTAACTTTGAGTTTGCAACAA 59.709 36.000 0.00 0.00 38.59 2.83
61 62 4.803088 GCATGTAACTTTGAGTTTGCAACA 59.197 37.500 0.00 0.00 38.59 3.33
62 63 4.085619 CGCATGTAACTTTGAGTTTGCAAC 60.086 41.667 0.00 0.00 38.63 4.17
63 64 4.041049 CGCATGTAACTTTGAGTTTGCAA 58.959 39.130 13.30 0.00 38.63 4.08
64 65 3.313803 TCGCATGTAACTTTGAGTTTGCA 59.686 39.130 13.30 7.90 38.63 4.08
65 66 3.884169 TCGCATGTAACTTTGAGTTTGC 58.116 40.909 0.00 2.84 39.51 3.68
69 70 8.873830 GCATATATATCGCATGTAACTTTGAGT 58.126 33.333 10.46 0.00 0.00 3.41
70 71 8.052490 CGCATATATATCGCATGTAACTTTGAG 58.948 37.037 13.82 0.00 0.00 3.02
71 72 7.544217 ACGCATATATATCGCATGTAACTTTGA 59.456 33.333 13.82 0.00 0.00 2.69
72 73 7.632132 CACGCATATATATCGCATGTAACTTTG 59.368 37.037 13.82 0.00 0.00 2.77
73 74 7.201522 CCACGCATATATATCGCATGTAACTTT 60.202 37.037 13.82 0.00 0.00 2.66
74 75 6.255670 CCACGCATATATATCGCATGTAACTT 59.744 38.462 13.82 0.00 0.00 2.66
75 76 5.748630 CCACGCATATATATCGCATGTAACT 59.251 40.000 13.82 0.00 0.00 2.24
76 77 5.746721 TCCACGCATATATATCGCATGTAAC 59.253 40.000 13.82 0.00 0.00 2.50
77 78 5.897050 TCCACGCATATATATCGCATGTAA 58.103 37.500 13.82 2.19 0.00 2.41
78 79 5.508200 TCCACGCATATATATCGCATGTA 57.492 39.130 13.82 0.00 0.00 2.29
79 80 4.385358 TCCACGCATATATATCGCATGT 57.615 40.909 13.82 5.53 0.00 3.21
80 81 5.717038 TTTCCACGCATATATATCGCATG 57.283 39.130 13.82 10.20 0.00 4.06
81 82 7.433680 TCTATTTCCACGCATATATATCGCAT 58.566 34.615 13.82 0.92 0.00 4.73
82 83 6.801575 TCTATTTCCACGCATATATATCGCA 58.198 36.000 13.82 0.00 0.00 5.10
83 84 7.875316 ATCTATTTCCACGCATATATATCGC 57.125 36.000 11.87 9.46 0.00 4.58
90 91 8.803235 TCAAGTACTATCTATTTCCACGCATAT 58.197 33.333 0.00 0.00 0.00 1.78
91 92 8.173542 TCAAGTACTATCTATTTCCACGCATA 57.826 34.615 0.00 0.00 0.00 3.14
92 93 7.050970 TCAAGTACTATCTATTTCCACGCAT 57.949 36.000 0.00 0.00 0.00 4.73
93 94 6.096423 ACTCAAGTACTATCTATTTCCACGCA 59.904 38.462 0.00 0.00 0.00 5.24
94 95 6.505272 ACTCAAGTACTATCTATTTCCACGC 58.495 40.000 0.00 0.00 0.00 5.34
95 96 8.838365 ACTACTCAAGTACTATCTATTTCCACG 58.162 37.037 0.00 0.00 36.36 4.94
96 97 9.953697 CACTACTCAAGTACTATCTATTTCCAC 57.046 37.037 0.00 0.00 35.76 4.02
97 98 9.916360 TCACTACTCAAGTACTATCTATTTCCA 57.084 33.333 0.00 0.00 35.76 3.53
103 104 9.549078 CACATCTCACTACTCAAGTACTATCTA 57.451 37.037 0.00 0.00 35.76 1.98
104 105 7.012894 GCACATCTCACTACTCAAGTACTATCT 59.987 40.741 0.00 0.00 35.76 1.98
105 106 7.136119 GCACATCTCACTACTCAAGTACTATC 58.864 42.308 0.00 0.00 35.76 2.08
106 107 6.603599 TGCACATCTCACTACTCAAGTACTAT 59.396 38.462 0.00 0.00 35.76 2.12
107 108 5.944007 TGCACATCTCACTACTCAAGTACTA 59.056 40.000 0.00 0.00 35.76 1.82
108 109 4.767409 TGCACATCTCACTACTCAAGTACT 59.233 41.667 0.00 0.00 35.76 2.73
109 110 5.060662 TGCACATCTCACTACTCAAGTAC 57.939 43.478 0.00 0.00 35.76 2.73
110 111 4.767409 ACTGCACATCTCACTACTCAAGTA 59.233 41.667 0.00 0.00 35.76 2.24
111 112 3.576118 ACTGCACATCTCACTACTCAAGT 59.424 43.478 0.00 0.00 39.81 3.16
112 113 4.185467 ACTGCACATCTCACTACTCAAG 57.815 45.455 0.00 0.00 0.00 3.02
113 114 4.607293 AACTGCACATCTCACTACTCAA 57.393 40.909 0.00 0.00 0.00 3.02
114 115 4.607293 AAACTGCACATCTCACTACTCA 57.393 40.909 0.00 0.00 0.00 3.41
115 116 4.752101 ACAAAACTGCACATCTCACTACTC 59.248 41.667 0.00 0.00 0.00 2.59
116 117 4.708177 ACAAAACTGCACATCTCACTACT 58.292 39.130 0.00 0.00 0.00 2.57
117 118 6.018262 TGTTACAAAACTGCACATCTCACTAC 60.018 38.462 0.00 0.00 36.51 2.73
118 119 6.052360 TGTTACAAAACTGCACATCTCACTA 58.948 36.000 0.00 0.00 36.51 2.74
119 120 4.881273 TGTTACAAAACTGCACATCTCACT 59.119 37.500 0.00 0.00 36.51 3.41
120 121 5.168526 TGTTACAAAACTGCACATCTCAC 57.831 39.130 0.00 0.00 36.51 3.51
121 122 5.334028 CGATGTTACAAAACTGCACATCTCA 60.334 40.000 8.52 0.00 41.02 3.27
122 123 5.082059 CGATGTTACAAAACTGCACATCTC 58.918 41.667 8.52 0.00 41.02 2.75
123 124 4.515191 ACGATGTTACAAAACTGCACATCT 59.485 37.500 8.52 0.00 41.02 2.90
124 125 4.612614 CACGATGTTACAAAACTGCACATC 59.387 41.667 0.00 0.00 40.18 3.06
125 126 4.536065 CACGATGTTACAAAACTGCACAT 58.464 39.130 0.00 0.00 36.51 3.21
126 127 3.242903 CCACGATGTTACAAAACTGCACA 60.243 43.478 0.00 0.00 36.51 4.57
127 128 3.242936 ACCACGATGTTACAAAACTGCAC 60.243 43.478 0.00 0.00 36.51 4.57
128 129 2.946329 ACCACGATGTTACAAAACTGCA 59.054 40.909 0.00 0.00 36.51 4.41
129 130 3.242936 ACACCACGATGTTACAAAACTGC 60.243 43.478 0.00 0.00 36.51 4.40
130 131 4.034626 TGACACCACGATGTTACAAAACTG 59.965 41.667 0.00 0.00 36.51 3.16
131 132 4.034742 GTGACACCACGATGTTACAAAACT 59.965 41.667 0.00 0.00 38.58 2.66
132 133 4.201832 TGTGACACCACGATGTTACAAAAC 60.202 41.667 2.45 0.00 43.67 2.43
133 134 3.939592 TGTGACACCACGATGTTACAAAA 59.060 39.130 2.45 0.00 43.67 2.44
134 135 3.532542 TGTGACACCACGATGTTACAAA 58.467 40.909 2.45 0.00 43.67 2.83
135 136 3.127589 CTGTGACACCACGATGTTACAA 58.872 45.455 14.14 3.85 45.26 2.41
136 137 2.101750 ACTGTGACACCACGATGTTACA 59.898 45.455 2.45 13.13 44.22 2.41
137 138 2.750948 ACTGTGACACCACGATGTTAC 58.249 47.619 2.45 0.00 46.06 2.50
138 139 3.462483 AACTGTGACACCACGATGTTA 57.538 42.857 2.45 0.00 46.06 2.41
139 140 2.325583 AACTGTGACACCACGATGTT 57.674 45.000 2.45 0.00 46.06 2.71
140 141 2.325583 AAACTGTGACACCACGATGT 57.674 45.000 2.45 0.00 46.06 3.06
141 142 2.611751 TGAAAACTGTGACACCACGATG 59.388 45.455 2.45 0.00 46.06 3.84
142 143 2.912771 TGAAAACTGTGACACCACGAT 58.087 42.857 2.45 0.00 46.06 3.73
143 144 2.388310 TGAAAACTGTGACACCACGA 57.612 45.000 2.45 0.00 46.06 4.35
144 145 2.611751 TGATGAAAACTGTGACACCACG 59.388 45.455 2.45 0.00 46.06 4.94
145 146 4.836125 ATGATGAAAACTGTGACACCAC 57.164 40.909 2.45 0.00 43.46 4.16
146 147 4.886489 TGAATGATGAAAACTGTGACACCA 59.114 37.500 2.45 0.00 0.00 4.17
147 148 5.437289 TGAATGATGAAAACTGTGACACC 57.563 39.130 2.45 0.00 0.00 4.16
148 149 6.728200 TCTTGAATGATGAAAACTGTGACAC 58.272 36.000 0.00 0.00 0.00 3.67
149 150 6.940831 TCTTGAATGATGAAAACTGTGACA 57.059 33.333 0.00 0.00 0.00 3.58
150 151 7.917505 AGTTTCTTGAATGATGAAAACTGTGAC 59.082 33.333 0.00 0.00 31.43 3.67
151 152 7.999679 AGTTTCTTGAATGATGAAAACTGTGA 58.000 30.769 0.00 0.00 31.43 3.58
152 153 9.173939 GTAGTTTCTTGAATGATGAAAACTGTG 57.826 33.333 8.19 0.00 31.43 3.66
153 154 9.125026 AGTAGTTTCTTGAATGATGAAAACTGT 57.875 29.630 8.19 0.00 31.43 3.55
154 155 9.956720 AAGTAGTTTCTTGAATGATGAAAACTG 57.043 29.630 8.19 0.00 31.43 3.16
156 157 9.950680 TGAAGTAGTTTCTTGAATGATGAAAAC 57.049 29.630 0.00 0.00 36.71 2.43
159 160 9.288576 ACATGAAGTAGTTTCTTGAATGATGAA 57.711 29.630 0.00 0.00 41.22 2.57
160 161 8.853077 ACATGAAGTAGTTTCTTGAATGATGA 57.147 30.769 0.00 0.00 41.22 2.92
218 219 9.819267 TGACACCACGATGTTACATATAAAATA 57.181 29.630 0.00 0.00 31.24 1.40
219 220 8.725405 TGACACCACGATGTTACATATAAAAT 57.275 30.769 0.00 0.00 31.24 1.82
220 221 8.549338 TTGACACCACGATGTTACATATAAAA 57.451 30.769 0.00 0.00 31.24 1.52
221 222 8.549338 TTTGACACCACGATGTTACATATAAA 57.451 30.769 0.00 0.00 31.24 1.40
222 223 7.820386 ACTTTGACACCACGATGTTACATATAA 59.180 33.333 0.00 0.00 31.24 0.98
223 224 7.324935 ACTTTGACACCACGATGTTACATATA 58.675 34.615 0.00 0.00 31.24 0.86
224 225 6.170506 ACTTTGACACCACGATGTTACATAT 58.829 36.000 0.00 0.00 31.24 1.78
225 226 5.543714 ACTTTGACACCACGATGTTACATA 58.456 37.500 0.00 0.00 31.24 2.29
226 227 4.385825 ACTTTGACACCACGATGTTACAT 58.614 39.130 0.00 0.00 31.24 2.29
227 228 3.799366 ACTTTGACACCACGATGTTACA 58.201 40.909 0.00 0.00 31.24 2.41
228 229 4.510340 AGAACTTTGACACCACGATGTTAC 59.490 41.667 0.00 0.00 31.24 2.50
229 230 4.699637 AGAACTTTGACACCACGATGTTA 58.300 39.130 0.00 0.00 31.24 2.41
230 231 3.541632 AGAACTTTGACACCACGATGTT 58.458 40.909 0.00 0.00 31.24 2.71
231 232 3.131396 GAGAACTTTGACACCACGATGT 58.869 45.455 0.00 0.00 34.78 3.06
232 233 3.059597 GTGAGAACTTTGACACCACGATG 60.060 47.826 0.00 0.00 0.00 3.84
233 234 3.131396 GTGAGAACTTTGACACCACGAT 58.869 45.455 0.00 0.00 0.00 3.73
234 235 2.093921 TGTGAGAACTTTGACACCACGA 60.094 45.455 0.00 0.00 33.08 4.35
235 236 2.276201 TGTGAGAACTTTGACACCACG 58.724 47.619 0.00 0.00 33.08 4.94
236 237 6.560253 ATTATGTGAGAACTTTGACACCAC 57.440 37.500 0.00 0.00 33.08 4.16
237 238 7.936847 AGTAATTATGTGAGAACTTTGACACCA 59.063 33.333 0.00 0.00 33.08 4.17
238 239 8.230486 CAGTAATTATGTGAGAACTTTGACACC 58.770 37.037 0.00 0.00 33.08 4.16
239 240 8.774586 ACAGTAATTATGTGAGAACTTTGACAC 58.225 33.333 5.12 0.00 0.00 3.67
240 241 8.902540 ACAGTAATTATGTGAGAACTTTGACA 57.097 30.769 5.12 0.00 0.00 3.58
247 248 9.118236 GCTTTCAAACAGTAATTATGTGAGAAC 57.882 33.333 5.12 0.00 29.44 3.01
284 285 4.708177 AGTGCCACACCTGAATCATATAC 58.292 43.478 0.00 0.00 34.49 1.47
361 382 3.119137 GGCTTTAATCGGGCTCAAAACAT 60.119 43.478 0.00 0.00 0.00 2.71
363 384 2.416836 GGGCTTTAATCGGGCTCAAAAC 60.417 50.000 0.00 0.00 0.00 2.43
391 412 0.891373 TGCTCCAGTCTCTGTAGCAC 59.109 55.000 11.78 0.00 43.93 4.40
395 416 3.441500 TTCTCTGCTCCAGTCTCTGTA 57.558 47.619 0.00 0.00 32.61 2.74
408 429 7.060403 CAGATTTGTTTTCTTTCGATTCTCTGC 59.940 37.037 0.00 0.00 0.00 4.26
417 438 4.278858 TCGTGCAGATTTGTTTTCTTTCG 58.721 39.130 0.00 0.00 0.00 3.46
527 551 1.614241 GGTGGTGGTAGAGGACGCAT 61.614 60.000 0.00 0.00 0.00 4.73
538 562 2.529389 GAGTGGGGAGGTGGTGGT 60.529 66.667 0.00 0.00 0.00 4.16
868 927 2.124693 GGTCAGGGGAGAGCGAGAG 61.125 68.421 0.00 0.00 0.00 3.20
1351 1416 2.038863 TCCAAGCCCACCTTAGAGAA 57.961 50.000 0.00 0.00 31.00 2.87
1429 1494 2.895404 TCATAACATAGTACCGGGGCTC 59.105 50.000 6.32 0.00 0.00 4.70
1464 1529 3.444742 TGCCATGACTCAACAATCCATTC 59.555 43.478 0.00 0.00 0.00 2.67
1756 1838 6.493166 TGGGGTTCAGAAATCAAGTTATCAT 58.507 36.000 0.00 0.00 0.00 2.45
1943 2527 6.183360 CCCAACAGCAATATATTTTCCGAAGT 60.183 38.462 0.00 0.00 0.00 3.01
1947 2531 5.163561 ACACCCAACAGCAATATATTTTCCG 60.164 40.000 0.00 0.00 0.00 4.30
1960 2544 5.447624 AAAGTAAACATACACCCAACAGC 57.552 39.130 0.00 0.00 0.00 4.40
1963 2547 6.152154 AGGCATAAAGTAAACATACACCCAAC 59.848 38.462 0.00 0.00 0.00 3.77
1973 2557 9.474920 CAAGAAATCAAAGGCATAAAGTAAACA 57.525 29.630 0.00 0.00 0.00 2.83
1984 2568 0.975887 GGGCCAAGAAATCAAAGGCA 59.024 50.000 4.39 0.00 46.96 4.75
1985 2569 1.269958 AGGGCCAAGAAATCAAAGGC 58.730 50.000 6.18 0.00 44.48 4.35
1986 2570 3.168292 AGAAGGGCCAAGAAATCAAAGG 58.832 45.455 6.18 0.00 0.00 3.11
2006 2590 6.073003 ACAAAACTAATCAGCCTTCGAAGAAG 60.073 38.462 26.61 14.73 45.90 2.85
2014 2598 6.769512 TCTAGTGACAAAACTAATCAGCCTT 58.230 36.000 0.00 0.00 32.35 4.35
2054 2638 8.962884 AATTTGAATTGTTTCCTAGCAAAAGT 57.037 26.923 0.00 0.00 0.00 2.66
2055 2639 9.654417 CAAATTTGAATTGTTTCCTAGCAAAAG 57.346 29.630 13.08 0.00 0.00 2.27
2056 2640 9.388506 TCAAATTTGAATTGTTTCCTAGCAAAA 57.611 25.926 18.45 0.00 33.55 2.44
2058 2642 8.954950 TTCAAATTTGAATTGTTTCCTAGCAA 57.045 26.923 26.01 2.16 41.88 3.91
2059 2643 8.954950 TTTCAAATTTGAATTGTTTCCTAGCA 57.045 26.923 29.13 10.82 45.65 3.49
2060 2644 9.650371 GTTTTCAAATTTGAATTGTTTCCTAGC 57.350 29.630 29.13 12.73 45.65 3.42
2061 2645 9.848172 CGTTTTCAAATTTGAATTGTTTCCTAG 57.152 29.630 29.13 11.41 45.65 3.02
2062 2646 9.372369 ACGTTTTCAAATTTGAATTGTTTCCTA 57.628 25.926 29.13 12.10 45.65 2.94
2063 2647 8.262715 ACGTTTTCAAATTTGAATTGTTTCCT 57.737 26.923 29.13 8.44 45.65 3.36
2064 2648 9.974750 TTACGTTTTCAAATTTGAATTGTTTCC 57.025 25.926 29.13 13.59 45.65 3.13
2069 2653 9.760660 TTTGGTTACGTTTTCAAATTTGAATTG 57.239 25.926 29.13 23.04 45.65 2.32
2071 2655 9.157104 ACTTTGGTTACGTTTTCAAATTTGAAT 57.843 25.926 29.13 18.79 45.65 2.57
2095 2679 2.921834 TGCTTAGTCCTACTCCCACT 57.078 50.000 0.00 0.00 0.00 4.00
2104 2688 3.920231 TTGCTGATCATGCTTAGTCCT 57.080 42.857 15.20 0.00 0.00 3.85
2107 2691 5.651139 ACTTCATTTGCTGATCATGCTTAGT 59.349 36.000 15.20 4.93 32.72 2.24
2151 2822 7.121759 AGCGTTTTTGACACTAGTCTATACCTA 59.878 37.037 0.00 0.00 45.20 3.08
2152 2823 6.071503 AGCGTTTTTGACACTAGTCTATACCT 60.072 38.462 0.00 0.00 45.20 3.08
2154 2825 7.028361 AGAGCGTTTTTGACACTAGTCTATAC 58.972 38.462 0.00 0.00 45.20 1.47
2158 2829 4.323553 AGAGCGTTTTTGACACTAGTCT 57.676 40.909 0.00 0.00 45.20 3.24
2163 2834 5.751243 AATACAAGAGCGTTTTTGACACT 57.249 34.783 9.51 0.00 0.00 3.55
2174 3582 1.148310 CGCCCCATAATACAAGAGCG 58.852 55.000 0.00 0.00 36.06 5.03
2175 3583 1.071699 TCCGCCCCATAATACAAGAGC 59.928 52.381 0.00 0.00 0.00 4.09
2177 3585 1.697432 CCTCCGCCCCATAATACAAGA 59.303 52.381 0.00 0.00 0.00 3.02
2178 3586 1.271379 CCCTCCGCCCCATAATACAAG 60.271 57.143 0.00 0.00 0.00 3.16
2181 3589 0.613777 CTCCCTCCGCCCCATAATAC 59.386 60.000 0.00 0.00 0.00 1.89
2182 3590 0.192566 ACTCCCTCCGCCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
2184 3592 0.761702 GTACTCCCTCCGCCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
2185 3593 1.152398 GTACTCCCTCCGCCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
2191 3599 2.418976 GACAAAATTGTACTCCCTCCGC 59.581 50.000 0.00 0.00 42.43 5.54
2203 3611 9.731519 GAAAAATCAGCTTTATCGACAAAATTG 57.268 29.630 0.00 0.00 0.00 2.32
2236 5367 1.284657 CGCTTGACAGGCAGTATCAG 58.715 55.000 10.44 0.00 0.00 2.90
2238 5369 0.175760 TCCGCTTGACAGGCAGTATC 59.824 55.000 10.44 0.00 0.00 2.24
2239 5370 0.176680 CTCCGCTTGACAGGCAGTAT 59.823 55.000 10.44 0.00 0.00 2.12
2240 5371 1.591703 CTCCGCTTGACAGGCAGTA 59.408 57.895 10.44 0.00 0.00 2.74
2242 5373 3.123620 GCTCCGCTTGACAGGCAG 61.124 66.667 10.44 1.57 0.00 4.85
2243 5374 3.258228 ATGCTCCGCTTGACAGGCA 62.258 57.895 10.44 0.00 0.00 4.75
2244 5375 2.437359 ATGCTCCGCTTGACAGGC 60.437 61.111 0.00 0.00 0.00 4.85
2245 5376 1.364626 GACATGCTCCGCTTGACAGG 61.365 60.000 8.46 0.00 37.20 4.00
2256 5391 6.012658 TCCAAAATACAACAAGACATGCTC 57.987 37.500 0.00 0.00 0.00 4.26
2281 5416 3.814625 TCAAATACTGTGAGTGTGGCAA 58.185 40.909 0.00 0.00 0.00 4.52
2292 5429 5.357257 ACAAAGACACGTCTCAAATACTGT 58.643 37.500 0.00 0.00 39.39 3.55
2303 5440 7.678226 TGTAAAACTTTAGACAAAGACACGTC 58.322 34.615 4.23 0.00 43.32 4.34
2304 5441 7.599630 TGTAAAACTTTAGACAAAGACACGT 57.400 32.000 4.23 0.00 43.32 4.49
2305 5442 8.883789 TTTGTAAAACTTTAGACAAAGACACG 57.116 30.769 4.23 0.00 43.32 4.49
2337 5474 0.756294 TCGGCAGACAAGAGGAACAA 59.244 50.000 0.00 0.00 0.00 2.83
2362 5499 0.620556 ATCACAATCCGCTCCCTGTT 59.379 50.000 0.00 0.00 0.00 3.16
2412 5553 5.297776 CCAGGAACATAACATGAAGGACATC 59.702 44.000 0.00 0.00 37.07 3.06
2422 5563 4.385310 GGTAGGAAGCCAGGAACATAACAT 60.385 45.833 0.00 0.00 0.00 2.71
2427 5568 1.972588 AGGTAGGAAGCCAGGAACAT 58.027 50.000 0.00 0.00 0.00 2.71
2440 5581 0.389391 CACGGACCATGCTAGGTAGG 59.611 60.000 0.46 0.00 43.38 3.18
2476 5619 2.408271 ACATACACACCAGATGCCAG 57.592 50.000 0.00 0.00 0.00 4.85
2479 5622 2.609459 GCTGTACATACACACCAGATGC 59.391 50.000 0.00 0.00 31.93 3.91
2480 5623 3.118629 AGGCTGTACATACACACCAGATG 60.119 47.826 0.00 0.00 32.42 2.90
2481 5624 3.107601 AGGCTGTACATACACACCAGAT 58.892 45.455 0.00 0.00 32.42 2.90
2482 5625 2.233676 CAGGCTGTACATACACACCAGA 59.766 50.000 6.28 0.00 32.42 3.86
2483 5626 2.621338 CAGGCTGTACATACACACCAG 58.379 52.381 6.28 0.00 32.42 4.00
2484 5627 1.338674 GCAGGCTGTACATACACACCA 60.339 52.381 17.16 0.00 32.42 4.17
2485 5628 1.369625 GCAGGCTGTACATACACACC 58.630 55.000 17.16 0.00 31.93 4.16
2486 5629 0.999406 CGCAGGCTGTACATACACAC 59.001 55.000 17.16 0.00 31.93 3.82
2487 5630 0.739462 GCGCAGGCTGTACATACACA 60.739 55.000 17.16 0.00 35.83 3.72
2488 5631 2.006772 GCGCAGGCTGTACATACAC 58.993 57.895 17.16 0.00 35.83 2.90
2489 5632 4.513519 GCGCAGGCTGTACATACA 57.486 55.556 17.16 0.00 35.83 2.29
2500 5643 3.818787 GCATTGTCCAGGCGCAGG 61.819 66.667 10.83 11.25 0.00 4.85
2501 5644 4.170062 CGCATTGTCCAGGCGCAG 62.170 66.667 10.83 0.00 44.49 5.18
2505 5648 1.867233 CATACTACGCATTGTCCAGGC 59.133 52.381 0.00 0.00 0.00 4.85
2506 5649 3.179443 ACATACTACGCATTGTCCAGG 57.821 47.619 0.00 0.00 0.00 4.45
2507 5650 4.740205 CAGTACATACTACGCATTGTCCAG 59.260 45.833 0.00 0.00 34.13 3.86
2508 5651 4.399934 TCAGTACATACTACGCATTGTCCA 59.600 41.667 0.00 0.00 34.13 4.02
2509 5652 4.928601 TCAGTACATACTACGCATTGTCC 58.071 43.478 0.00 0.00 34.13 4.02
2510 5653 7.646526 TGTTATCAGTACATACTACGCATTGTC 59.353 37.037 0.00 0.00 34.13 3.18
2511 5654 7.485810 TGTTATCAGTACATACTACGCATTGT 58.514 34.615 0.00 0.00 34.13 2.71
2512 5655 7.924103 TGTTATCAGTACATACTACGCATTG 57.076 36.000 0.00 0.00 34.13 2.82
2513 5656 8.357402 TGATGTTATCAGTACATACTACGCATT 58.643 33.333 0.00 0.00 36.41 3.56
2514 5657 7.882179 TGATGTTATCAGTACATACTACGCAT 58.118 34.615 0.00 0.00 36.41 4.73
2515 5658 7.266922 TGATGTTATCAGTACATACTACGCA 57.733 36.000 0.00 0.00 36.41 5.24
2516 5659 8.021396 TGATGATGTTATCAGTACATACTACGC 58.979 37.037 0.00 0.00 43.53 4.42
2537 5680 9.730705 ACAGAGAAAGAAAAATGTAGATGATGA 57.269 29.630 0.00 0.00 0.00 2.92
2540 5683 9.658799 CCTACAGAGAAAGAAAAATGTAGATGA 57.341 33.333 10.82 0.00 41.55 2.92
2541 5684 8.394121 GCCTACAGAGAAAGAAAAATGTAGATG 58.606 37.037 10.82 0.00 41.55 2.90
2542 5685 8.325046 AGCCTACAGAGAAAGAAAAATGTAGAT 58.675 33.333 10.82 0.00 41.55 1.98
2543 5686 7.604164 CAGCCTACAGAGAAAGAAAAATGTAGA 59.396 37.037 10.82 0.00 41.55 2.59
2544 5687 7.604164 TCAGCCTACAGAGAAAGAAAAATGTAG 59.396 37.037 0.00 0.00 39.71 2.74
2545 5688 7.450074 TCAGCCTACAGAGAAAGAAAAATGTA 58.550 34.615 0.00 0.00 0.00 2.29
2546 5689 6.299141 TCAGCCTACAGAGAAAGAAAAATGT 58.701 36.000 0.00 0.00 0.00 2.71
2547 5690 6.808008 TCAGCCTACAGAGAAAGAAAAATG 57.192 37.500 0.00 0.00 0.00 2.32
2548 5691 6.376581 CCATCAGCCTACAGAGAAAGAAAAAT 59.623 38.462 0.00 0.00 0.00 1.82
2549 5692 5.707298 CCATCAGCCTACAGAGAAAGAAAAA 59.293 40.000 0.00 0.00 0.00 1.94
2550 5693 5.248640 CCATCAGCCTACAGAGAAAGAAAA 58.751 41.667 0.00 0.00 0.00 2.29
2551 5694 4.836825 CCATCAGCCTACAGAGAAAGAAA 58.163 43.478 0.00 0.00 0.00 2.52
2552 5695 3.369892 GCCATCAGCCTACAGAGAAAGAA 60.370 47.826 0.00 0.00 34.35 2.52
2553 5696 2.169352 GCCATCAGCCTACAGAGAAAGA 59.831 50.000 0.00 0.00 34.35 2.52
2554 5697 2.093288 TGCCATCAGCCTACAGAGAAAG 60.093 50.000 0.00 0.00 42.71 2.62
2555 5698 1.908619 TGCCATCAGCCTACAGAGAAA 59.091 47.619 0.00 0.00 42.71 2.52
2556 5699 1.571955 TGCCATCAGCCTACAGAGAA 58.428 50.000 0.00 0.00 42.71 2.87
2557 5700 1.690893 GATGCCATCAGCCTACAGAGA 59.309 52.381 0.00 0.00 42.71 3.10
2558 5701 1.693062 AGATGCCATCAGCCTACAGAG 59.307 52.381 7.56 0.00 42.71 3.35
2559 5702 1.415289 CAGATGCCATCAGCCTACAGA 59.585 52.381 7.56 0.00 42.71 3.41
2560 5703 1.542767 CCAGATGCCATCAGCCTACAG 60.543 57.143 7.56 0.00 42.71 2.74
2561 5704 0.471191 CCAGATGCCATCAGCCTACA 59.529 55.000 7.56 0.00 42.71 2.74
2562 5705 0.471617 ACCAGATGCCATCAGCCTAC 59.528 55.000 7.56 0.00 42.71 3.18
2563 5706 0.471191 CACCAGATGCCATCAGCCTA 59.529 55.000 7.56 0.00 42.71 3.93
2564 5707 1.226542 CACCAGATGCCATCAGCCT 59.773 57.895 7.56 0.00 42.71 4.58
2565 5708 1.077212 ACACCAGATGCCATCAGCC 60.077 57.895 7.56 0.00 42.71 4.85
2566 5709 0.679002 ACACACCAGATGCCATCAGC 60.679 55.000 7.56 0.00 44.14 4.26
2567 5710 2.696989 TACACACCAGATGCCATCAG 57.303 50.000 7.56 0.00 0.00 2.90
2568 5711 2.921821 CATACACACCAGATGCCATCA 58.078 47.619 7.56 0.00 0.00 3.07
2569 5712 1.605710 GCATACACACCAGATGCCATC 59.394 52.381 0.00 0.00 40.08 3.51
2570 5713 1.064537 TGCATACACACCAGATGCCAT 60.065 47.619 3.81 0.00 44.34 4.40
2571 5714 0.327591 TGCATACACACCAGATGCCA 59.672 50.000 3.81 0.00 44.34 4.92
2572 5715 1.019673 CTGCATACACACCAGATGCC 58.980 55.000 3.81 0.00 44.34 4.40
2573 5716 0.379669 GCTGCATACACACCAGATGC 59.620 55.000 0.00 0.00 45.02 3.91
2574 5717 1.019673 GGCTGCATACACACCAGATG 58.980 55.000 0.50 0.00 0.00 2.90
2575 5718 0.914644 AGGCTGCATACACACCAGAT 59.085 50.000 0.50 0.00 0.00 2.90
2576 5719 0.250234 GAGGCTGCATACACACCAGA 59.750 55.000 0.50 0.00 0.00 3.86
2577 5720 0.251354 AGAGGCTGCATACACACCAG 59.749 55.000 0.50 0.00 0.00 4.00
2578 5721 0.692476 AAGAGGCTGCATACACACCA 59.308 50.000 0.50 0.00 0.00 4.17
2579 5722 1.089920 CAAGAGGCTGCATACACACC 58.910 55.000 0.50 0.00 0.00 4.16
2580 5723 1.813513 ACAAGAGGCTGCATACACAC 58.186 50.000 0.50 0.00 0.00 3.82
2581 5724 2.566833 AACAAGAGGCTGCATACACA 57.433 45.000 0.50 0.00 0.00 3.72
2582 5725 2.678336 GGTAACAAGAGGCTGCATACAC 59.322 50.000 0.50 0.00 0.00 2.90
2583 5726 2.985896 GGTAACAAGAGGCTGCATACA 58.014 47.619 0.50 0.00 0.00 2.29
2598 5741 4.770795 ACTATGCAAGAGACCATGGTAAC 58.229 43.478 19.80 14.74 32.39 2.50
2599 5742 6.099701 ACATACTATGCAAGAGACCATGGTAA 59.900 38.462 19.80 0.00 38.38 2.85
2600 5743 5.602561 ACATACTATGCAAGAGACCATGGTA 59.397 40.000 19.80 0.00 38.94 3.25
2601 5744 4.410228 ACATACTATGCAAGAGACCATGGT 59.590 41.667 19.89 19.89 37.07 3.55
2602 5745 4.965814 ACATACTATGCAAGAGACCATGG 58.034 43.478 11.19 11.19 0.00 3.66
2603 5746 6.644181 CAGTACATACTATGCAAGAGACCATG 59.356 42.308 6.02 8.11 34.13 3.66
2604 5747 6.551227 TCAGTACATACTATGCAAGAGACCAT 59.449 38.462 6.02 0.00 34.13 3.55
2605 5748 5.891551 TCAGTACATACTATGCAAGAGACCA 59.108 40.000 6.02 0.00 34.13 4.02
2606 5749 6.392625 TCAGTACATACTATGCAAGAGACC 57.607 41.667 6.02 0.00 34.13 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.