Multiple sequence alignment - TraesCS6A01G015100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G015100 chr6A 100.000 4515 0 0 1 4515 7199841 7204355 0.000000e+00 8338.0
1 TraesCS6A01G015100 chr6A 88.450 329 25 8 1920 2238 291224402 291224077 7.090000e-103 385.0
2 TraesCS6A01G015100 chr6A 88.095 210 24 1 501 709 115497516 115497725 9.700000e-62 248.0
3 TraesCS6A01G015100 chr6A 90.909 44 4 0 366 409 416604349 416604306 4.880000e-05 60.2
4 TraesCS6A01G015100 chr6D 94.509 2331 83 19 1866 4172 7397507 7399816 0.000000e+00 3554.0
5 TraesCS6A01G015100 chr6D 89.479 998 69 12 857 1842 7396377 7397350 0.000000e+00 1229.0
6 TraesCS6A01G015100 chr6D 95.942 345 14 0 4171 4515 65650948 65650604 1.100000e-155 560.0
7 TraesCS6A01G015100 chr6D 90.909 44 4 0 366 409 59630313 59630356 4.880000e-05 60.2
8 TraesCS6A01G015100 chr6B 90.056 1619 88 26 1768 3340 13810831 13812422 0.000000e+00 2030.0
9 TraesCS6A01G015100 chr6B 92.824 864 38 13 3324 4172 13812797 13813651 0.000000e+00 1230.0
10 TraesCS6A01G015100 chr6B 86.966 959 72 25 1 938 13808873 13809799 0.000000e+00 1029.0
11 TraesCS6A01G015100 chr6B 92.508 654 36 9 1066 1719 13810188 13810828 0.000000e+00 924.0
12 TraesCS6A01G015100 chr6B 92.742 124 9 0 1040 1163 101190573 101190696 3.590000e-41 180.0
13 TraesCS6A01G015100 chr7D 97.135 349 10 0 4167 4515 14573355 14573703 1.400000e-164 590.0
14 TraesCS6A01G015100 chr7D 96.067 356 12 2 4161 4515 31123370 31123016 3.030000e-161 579.0
15 TraesCS6A01G015100 chr1D 96.275 349 12 1 4167 4515 447461563 447461910 5.070000e-159 571.0
16 TraesCS6A01G015100 chr1D 95.690 348 15 0 4168 4515 346847831 346848178 1.100000e-155 560.0
17 TraesCS6A01G015100 chr1D 95.690 348 15 0 4168 4515 346859566 346859913 1.100000e-155 560.0
18 TraesCS6A01G015100 chr3D 95.751 353 14 1 4163 4515 363125546 363125897 6.550000e-158 568.0
19 TraesCS6A01G015100 chr4D 96.232 345 13 0 4171 4515 435224314 435223970 2.360000e-157 566.0
20 TraesCS6A01G015100 chrUn 95.442 351 16 0 4165 4515 103386811 103386461 1.100000e-155 560.0
21 TraesCS6A01G015100 chrUn 86.916 214 27 1 501 713 287536618 287536405 5.840000e-59 239.0
22 TraesCS6A01G015100 chrUn 86.916 214 27 1 501 713 287542739 287542526 5.840000e-59 239.0
23 TraesCS6A01G015100 chrUn 94.783 115 6 0 1049 1163 49759623 49759509 3.590000e-41 180.0
24 TraesCS6A01G015100 chrUn 91.111 45 2 2 366 408 65896512 65896468 4.880000e-05 60.2
25 TraesCS6A01G015100 chrUn 97.143 35 1 0 366 400 266221489 266221523 4.880000e-05 60.2
26 TraesCS6A01G015100 chrUn 97.143 35 1 0 366 400 266248284 266248318 4.880000e-05 60.2
27 TraesCS6A01G015100 chr4A 89.264 326 25 5 1920 2235 75130327 75130652 2.530000e-107 399.0
28 TraesCS6A01G015100 chr3A 88.785 214 23 1 501 713 630764175 630763962 1.250000e-65 261.0
29 TraesCS6A01G015100 chr3A 95.455 44 2 0 366 409 654312932 654312889 2.250000e-08 71.3
30 TraesCS6A01G015100 chr3A 90.909 44 3 1 366 409 694985306 694985348 1.750000e-04 58.4
31 TraesCS6A01G015100 chr7B 88.152 211 24 1 501 710 633030903 633031113 2.700000e-62 250.0
32 TraesCS6A01G015100 chr3B 87.850 214 25 1 501 713 623667556 623667343 2.700000e-62 250.0
33 TraesCS6A01G015100 chr3B 93.023 43 3 0 366 408 224152439 224152397 3.770000e-06 63.9
34 TraesCS6A01G015100 chr1B 88.152 211 24 1 501 710 675768844 675769054 2.700000e-62 250.0
35 TraesCS6A01G015100 chr1B 96.491 114 4 0 1050 1163 561143439 561143552 5.960000e-44 189.0
36 TraesCS6A01G015100 chr2B 87.442 215 25 2 501 713 617954206 617953992 3.490000e-61 246.0
37 TraesCS6A01G015100 chr7A 95.652 115 5 0 1049 1163 627323527 627323641 7.710000e-43 185.0
38 TraesCS6A01G015100 chr7A 92.562 121 9 0 1043 1163 14528797 14528677 1.670000e-39 174.0
39 TraesCS6A01G015100 chr1A 94.737 114 6 0 1050 1163 566961766 566961653 1.290000e-40 178.0
40 TraesCS6A01G015100 chr4B 91.129 124 11 0 1040 1163 21164825 21164948 7.770000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G015100 chr6A 7199841 7204355 4514 False 8338.00 8338 100.0000 1 4515 1 chr6A.!!$F1 4514
1 TraesCS6A01G015100 chr6D 7396377 7399816 3439 False 2391.50 3554 91.9940 857 4172 2 chr6D.!!$F2 3315
2 TraesCS6A01G015100 chr6B 13808873 13813651 4778 False 1303.25 2030 90.5885 1 4172 4 chr6B.!!$F2 4171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 687 0.028110 GCATCGCCGGAAATTCTGAC 59.972 55.0 5.05 0.0 0.00 3.51 F
1333 1621 0.032678 CACATTCCCCTCCGATCTCG 59.967 60.0 0.00 0.0 39.44 4.04 F
1625 1920 0.622738 AGAGGGTGTCATCATGGCCT 60.623 55.0 3.32 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2001 0.463620 AACGCCACAAAGCAAATGGT 59.536 45.000 0.0 0.0 35.79 3.55 R
3158 3610 1.348696 TGTGCTCTTGGAAGCTGATCA 59.651 47.619 0.0 0.0 42.94 2.92 R
3516 4362 0.692476 CAGGGACAATGGTGGAGACA 59.308 55.000 0.0 0.0 38.70 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 99 2.578178 CGAGCCGAGCGACAGAAG 60.578 66.667 0.00 0.00 0.00 2.85
98 100 2.202676 GAGCCGAGCGACAGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
99 101 2.676822 AGCCGAGCGACAGAAGGA 60.677 61.111 0.00 0.00 0.00 3.36
100 102 2.214181 GAGCCGAGCGACAGAAGGAA 62.214 60.000 0.00 0.00 0.00 3.36
101 103 1.807573 GCCGAGCGACAGAAGGAAG 60.808 63.158 0.00 0.00 0.00 3.46
102 104 1.807573 CCGAGCGACAGAAGGAAGC 60.808 63.158 0.00 0.00 0.00 3.86
103 105 2.155194 CGAGCGACAGAAGGAAGCG 61.155 63.158 0.00 0.00 0.00 4.68
104 106 1.213013 GAGCGACAGAAGGAAGCGA 59.787 57.895 0.00 0.00 0.00 4.93
105 107 0.800300 GAGCGACAGAAGGAAGCGAG 60.800 60.000 0.00 0.00 0.00 5.03
106 108 1.213013 GCGACAGAAGGAAGCGAGA 59.787 57.895 0.00 0.00 0.00 4.04
107 109 0.388649 GCGACAGAAGGAAGCGAGAA 60.389 55.000 0.00 0.00 0.00 2.87
108 110 1.341606 CGACAGAAGGAAGCGAGAAC 58.658 55.000 0.00 0.00 0.00 3.01
109 111 1.341606 GACAGAAGGAAGCGAGAACG 58.658 55.000 0.00 0.00 42.93 3.95
110 112 0.959553 ACAGAAGGAAGCGAGAACGA 59.040 50.000 0.00 0.00 42.66 3.85
111 113 1.340248 ACAGAAGGAAGCGAGAACGAA 59.660 47.619 0.00 0.00 42.66 3.85
112 114 1.989165 CAGAAGGAAGCGAGAACGAAG 59.011 52.381 0.00 0.00 42.66 3.79
113 115 0.716666 GAAGGAAGCGAGAACGAAGC 59.283 55.000 0.00 0.00 42.66 3.86
114 116 0.033504 AAGGAAGCGAGAACGAAGCA 59.966 50.000 0.00 0.00 42.66 3.91
115 117 0.033504 AGGAAGCGAGAACGAAGCAA 59.966 50.000 0.00 0.00 42.66 3.91
116 118 0.440371 GGAAGCGAGAACGAAGCAAG 59.560 55.000 0.00 0.00 42.66 4.01
117 119 0.179238 GAAGCGAGAACGAAGCAAGC 60.179 55.000 0.00 0.00 42.66 4.01
118 120 1.891060 AAGCGAGAACGAAGCAAGCG 61.891 55.000 0.00 0.00 42.66 4.68
119 121 2.372690 GCGAGAACGAAGCAAGCGA 61.373 57.895 0.00 0.00 42.66 4.93
120 122 1.698898 CGAGAACGAAGCAAGCGAG 59.301 57.895 0.00 0.00 42.66 5.03
121 123 1.417979 GAGAACGAAGCAAGCGAGC 59.582 57.895 0.00 0.00 0.00 5.03
122 124 2.094724 GAACGAAGCAAGCGAGCG 59.905 61.111 0.00 0.00 40.15 5.03
123 125 3.966488 GAACGAAGCAAGCGAGCGC 62.966 63.158 6.78 6.78 40.15 5.92
193 195 3.073650 ACTCTCCAAGCTTCTCCAAACAT 59.926 43.478 0.00 0.00 0.00 2.71
198 200 3.318839 CCAAGCTTCTCCAAACATTGTCA 59.681 43.478 0.00 0.00 0.00 3.58
204 206 6.014840 AGCTTCTCCAAACATTGTCAATCAAT 60.015 34.615 0.00 0.00 46.32 2.57
205 207 6.309737 GCTTCTCCAAACATTGTCAATCAATC 59.690 38.462 0.00 0.00 43.93 2.67
227 229 9.559732 CAATCACCTATATTACTCCAATGACAA 57.440 33.333 0.00 0.00 0.00 3.18
244 246 4.123506 TGACAAGTGCTCGACATGTTTAA 58.876 39.130 0.00 0.00 36.63 1.52
309 311 3.961182 TCACGCGTAATTGATCTCCTAC 58.039 45.455 13.44 0.00 0.00 3.18
432 437 4.342092 GGGTGAAGGCATGCTATTAAATGT 59.658 41.667 18.92 0.00 0.00 2.71
442 447 7.975616 GGCATGCTATTAAATGTTATATGGTGG 59.024 37.037 18.92 0.00 0.00 4.61
520 527 0.091846 CGCTCATATACACGCGCATG 59.908 55.000 5.73 4.48 39.11 4.06
545 552 4.041567 ACTCATCCCTATGAACACACACAA 59.958 41.667 0.00 0.00 41.57 3.33
547 554 4.041567 TCATCCCTATGAACACACACAAGT 59.958 41.667 0.00 0.00 39.20 3.16
562 569 4.398988 CACACAAGTACACCCTACCGTATA 59.601 45.833 0.00 0.00 0.00 1.47
567 574 3.633986 AGTACACCCTACCGTATAAGCAC 59.366 47.826 0.00 0.00 0.00 4.40
571 578 2.091444 ACCCTACCGTATAAGCACCTCT 60.091 50.000 0.00 0.00 0.00 3.69
578 585 3.003897 CCGTATAAGCACCTCTGAGAGAC 59.996 52.174 11.82 0.00 0.00 3.36
586 593 1.383456 CCTCTGAGAGACTGAGCCGG 61.383 65.000 11.82 0.00 41.28 6.13
587 594 2.003658 CTCTGAGAGACTGAGCCGGC 62.004 65.000 21.89 21.89 37.65 6.13
599 606 3.324846 ACTGAGCCGGCATATTATCTTGA 59.675 43.478 31.54 0.00 0.00 3.02
624 631 1.647346 ACGAAGTCACAAAAGACGCA 58.353 45.000 0.00 0.00 43.24 5.24
627 634 2.220824 CGAAGTCACAAAAGACGCATCA 59.779 45.455 0.00 0.00 43.24 3.07
635 642 3.612860 ACAAAAGACGCATCATAGTCGAC 59.387 43.478 7.70 7.70 41.86 4.20
637 644 0.308068 AGACGCATCATAGTCGACGG 59.692 55.000 10.46 4.21 41.86 4.79
643 650 2.927477 GCATCATAGTCGACGGAAACAA 59.073 45.455 10.46 0.00 0.00 2.83
644 651 3.000322 GCATCATAGTCGACGGAAACAAG 60.000 47.826 10.46 0.00 0.00 3.16
651 658 0.669625 CGACGGAAACAAGTCCTCCC 60.670 60.000 0.00 0.00 35.31 4.30
653 660 0.108019 ACGGAAACAAGTCCTCCCAC 59.892 55.000 0.00 0.00 35.31 4.61
655 662 1.621814 CGGAAACAAGTCCTCCCACTA 59.378 52.381 0.00 0.00 35.31 2.74
659 666 5.077564 GGAAACAAGTCCTCCCACTAAAAT 58.922 41.667 0.00 0.00 34.56 1.82
678 685 1.010797 CGCATCGCCGGAAATTCTG 60.011 57.895 5.05 0.00 0.00 3.02
679 686 1.428370 CGCATCGCCGGAAATTCTGA 61.428 55.000 5.05 0.00 0.00 3.27
680 687 0.028110 GCATCGCCGGAAATTCTGAC 59.972 55.000 5.05 0.00 0.00 3.51
687 698 4.272504 TCGCCGGAAATTCTGACATAAATC 59.727 41.667 5.05 0.00 0.00 2.17
689 700 4.338118 GCCGGAAATTCTGACATAAATCCA 59.662 41.667 5.05 0.00 0.00 3.41
707 718 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
752 764 3.080300 ACGAACCTTTTATGGCCATCA 57.920 42.857 24.80 9.00 0.00 3.07
775 787 2.803030 ATCAAAGCATGCTCTCACCT 57.197 45.000 22.93 0.00 0.00 4.00
777 789 2.430465 TCAAAGCATGCTCTCACCTTC 58.570 47.619 22.93 0.00 0.00 3.46
778 790 1.471684 CAAAGCATGCTCTCACCTTCC 59.528 52.381 22.93 0.00 0.00 3.46
779 791 0.694771 AAGCATGCTCTCACCTTCCA 59.305 50.000 22.93 0.00 0.00 3.53
781 793 1.284198 AGCATGCTCTCACCTTCCAAT 59.716 47.619 16.30 0.00 0.00 3.16
784 802 1.067295 TGCTCTCACCTTCCAATGGT 58.933 50.000 0.00 0.00 38.53 3.55
796 814 2.151202 TCCAATGGTTCGTGAAAGAGC 58.849 47.619 0.00 0.00 0.00 4.09
797 815 1.879380 CCAATGGTTCGTGAAAGAGCA 59.121 47.619 0.00 0.00 0.00 4.26
798 816 2.489329 CCAATGGTTCGTGAAAGAGCAT 59.511 45.455 0.00 0.00 33.34 3.79
799 817 3.495193 CAATGGTTCGTGAAAGAGCATG 58.505 45.455 0.00 0.00 32.42 4.06
800 818 2.542020 TGGTTCGTGAAAGAGCATGA 57.458 45.000 0.00 0.00 32.26 3.07
802 820 1.734465 GGTTCGTGAAAGAGCATGAGG 59.266 52.381 0.00 0.00 35.42 3.86
803 821 1.129437 GTTCGTGAAAGAGCATGAGGC 59.871 52.381 0.00 0.00 45.30 4.70
824 843 3.614616 GCGGTGTTTGACATCTCTAAGAG 59.385 47.826 0.00 0.00 0.00 2.85
877 898 5.296780 AGTGAACAAATGGAATGCGTATAGG 59.703 40.000 0.00 0.00 0.00 2.57
878 899 4.036262 TGAACAAATGGAATGCGTATAGGC 59.964 41.667 10.48 10.48 0.00 3.93
907 928 1.149987 GTCCACGCCATGAAAACGTA 58.850 50.000 0.00 0.00 38.09 3.57
908 929 1.735571 GTCCACGCCATGAAAACGTAT 59.264 47.619 0.00 0.00 38.09 3.06
940 961 4.450082 ACGCCAATCTATTTTTCCCAAC 57.550 40.909 0.00 0.00 0.00 3.77
953 974 2.350458 CCCAACCCCATTTCCGCAG 61.350 63.158 0.00 0.00 0.00 5.18
970 991 1.000019 AGAACAGGTCCGGATCCGA 60.000 57.895 35.42 18.23 42.83 4.55
971 992 1.141234 GAACAGGTCCGGATCCGAC 59.859 63.158 35.42 27.11 42.83 4.79
972 993 2.609183 GAACAGGTCCGGATCCGACG 62.609 65.000 35.42 19.52 42.83 5.12
973 994 4.570663 CAGGTCCGGATCCGACGC 62.571 72.222 35.42 22.15 42.83 5.19
975 996 4.570663 GGTCCGGATCCGACGCAG 62.571 72.222 35.42 17.97 42.83 5.18
980 1001 4.451150 GGATCCGACGCAGCCACA 62.451 66.667 0.00 0.00 0.00 4.17
981 1002 2.887568 GATCCGACGCAGCCACAG 60.888 66.667 0.00 0.00 0.00 3.66
1293 1574 3.210012 AACAATCACCCAGGCCGCT 62.210 57.895 0.00 0.00 0.00 5.52
1299 1580 2.933834 ACCCAGGCCGCTAAGGTT 60.934 61.111 0.00 0.00 43.70 3.50
1301 1582 2.124695 CCAGGCCGCTAAGGTTCC 60.125 66.667 0.00 0.00 43.70 3.62
1302 1583 2.511600 CAGGCCGCTAAGGTTCCG 60.512 66.667 0.00 0.00 43.70 4.30
1315 1596 2.123180 TTCCGCCTTCTACCCCCA 59.877 61.111 0.00 0.00 0.00 4.96
1333 1621 0.032678 CACATTCCCCTCCGATCTCG 59.967 60.000 0.00 0.00 39.44 4.04
1346 1634 1.332377 CGATCTCGCCGAAATTTGCTC 60.332 52.381 0.00 0.00 0.00 4.26
1354 1642 1.466360 CCGAAATTTGCTCAAGCTCGG 60.466 52.381 13.12 13.12 42.66 4.63
1355 1643 1.466360 CGAAATTTGCTCAAGCTCGGG 60.466 52.381 0.00 0.00 42.66 5.14
1356 1644 1.541588 GAAATTTGCTCAAGCTCGGGT 59.458 47.619 0.00 0.00 42.66 5.28
1357 1645 1.620822 AATTTGCTCAAGCTCGGGTT 58.379 45.000 3.32 0.00 42.66 4.11
1358 1646 0.883833 ATTTGCTCAAGCTCGGGTTG 59.116 50.000 3.32 8.85 41.65 3.77
1374 1662 5.081032 TCGGGTTGATTTGTATTTTTCCCT 58.919 37.500 0.00 0.00 0.00 4.20
1377 1665 5.937540 GGGTTGATTTGTATTTTTCCCTTGG 59.062 40.000 0.00 0.00 0.00 3.61
1501 1795 7.041721 GCATAACTATGGACGGATTATCATGA 58.958 38.462 0.00 0.00 34.32 3.07
1539 1833 4.085733 TGAATGTCCAATGGTCGGATTTT 58.914 39.130 0.00 0.00 34.32 1.82
1543 1837 3.694072 TGTCCAATGGTCGGATTTTGATC 59.306 43.478 0.00 0.00 34.32 2.92
1625 1920 0.622738 AGAGGGTGTCATCATGGCCT 60.623 55.000 3.32 0.00 0.00 5.19
1642 1937 1.524621 CTTCGAGCATCCGGGCATT 60.525 57.895 0.00 0.00 35.83 3.56
1706 2001 7.728083 TCAAAAGTAATCTCATTTCCCTGGAAA 59.272 33.333 13.42 13.42 46.37 3.13
1842 2137 8.572185 TGCTTTGCACATTATTTACTCTTGTAA 58.428 29.630 0.00 0.00 33.54 2.41
1868 2278 9.476202 AAGGATAATGAGTTTTAAGTTGTTTGC 57.524 29.630 0.00 0.00 0.00 3.68
1949 2382 9.031537 TCAGTTAACTGGAATGTCTTGATACTA 57.968 33.333 30.35 6.67 43.91 1.82
2039 2472 6.470235 GGTTGTCTGATCGCATTATTCTTTTG 59.530 38.462 0.00 0.00 0.00 2.44
2040 2473 6.983474 TGTCTGATCGCATTATTCTTTTGA 57.017 33.333 0.00 0.00 0.00 2.69
2041 2474 7.558161 TGTCTGATCGCATTATTCTTTTGAT 57.442 32.000 0.00 0.00 0.00 2.57
2042 2475 8.661352 TGTCTGATCGCATTATTCTTTTGATA 57.339 30.769 0.00 0.00 0.00 2.15
2043 2476 9.276590 TGTCTGATCGCATTATTCTTTTGATAT 57.723 29.630 0.00 0.00 0.00 1.63
2187 2620 4.019411 TCAGTGGAAGTTTGCTCCATGATA 60.019 41.667 0.00 0.00 35.82 2.15
2190 2623 5.591877 AGTGGAAGTTTGCTCCATGATATTC 59.408 40.000 0.00 0.00 35.82 1.75
2434 2872 9.476202 TCAACCATCTTATAACTTGTCATATCG 57.524 33.333 0.00 0.00 0.00 2.92
2449 2887 8.851960 TTGTCATATCGTACTACTTGTTGATC 57.148 34.615 0.00 0.00 0.00 2.92
2625 3070 7.023171 ACAATAATAGGTGGGTTGTCTAACA 57.977 36.000 0.00 0.00 38.58 2.41
2658 3103 6.021030 TGTATTGTAGACCCTACTTTCTGGT 58.979 40.000 5.82 0.00 34.33 4.00
2744 3189 9.965824 AAAACTGATGGTAACTTTCTTTATGTG 57.034 29.630 0.00 0.00 37.61 3.21
2772 3217 8.474025 AGATTGAACACCAAGACATTTGTTTTA 58.526 29.630 0.00 0.00 38.31 1.52
2798 3243 9.762381 AAACCTGGGAATTGTAATTTCTATGTA 57.238 29.630 0.00 0.00 0.00 2.29
2820 3265 8.630054 TGTAACTCATGGTTAAAACTATTGCT 57.370 30.769 7.95 0.00 41.41 3.91
2825 3270 8.190784 ACTCATGGTTAAAACTATTGCTTATGC 58.809 33.333 0.00 0.00 40.20 3.14
2995 3447 1.665442 AAGGGCGTGCCATTCAAAC 59.335 52.632 13.76 0.00 34.80 2.93
3076 3528 5.714333 TGAGAGGCCATTGCTTTGTTTAATA 59.286 36.000 5.01 0.00 37.74 0.98
3103 3555 5.768317 TCGAATTTGGTGTGGAAATTTCTC 58.232 37.500 17.42 11.42 34.00 2.87
3125 3577 8.122472 TCTCGCCTTGAATCTTACATATGATA 57.878 34.615 10.38 0.00 0.00 2.15
3158 3610 6.296720 CCTTCTTAGGTCTCAAGGGAATTCTT 60.297 42.308 5.23 0.00 36.74 2.52
3208 3660 6.152831 TCTGAATTTCGATCAGAGGTCAGTAA 59.847 38.462 12.16 0.00 46.23 2.24
3227 3679 9.968743 GTCAGTAAATATAACTGTAGTTTGCAC 57.031 33.333 14.55 3.66 43.88 4.57
3481 4327 2.435059 GTGCTCAACTCCGCCCTC 60.435 66.667 0.00 0.00 0.00 4.30
3516 4362 5.542635 TGAATTATGGCGTCCCTATCTAACT 59.457 40.000 0.00 0.00 0.00 2.24
3542 4388 2.440796 CATTGTCCCTGCGGCCAT 60.441 61.111 2.24 0.00 0.00 4.40
3576 4422 7.272037 TCTTTTTAACCTCAAGGAACATGAC 57.728 36.000 0.00 0.00 38.94 3.06
3682 4531 1.062294 CTTCTGCTGCGCTGAATTCTC 59.938 52.381 19.32 0.00 43.35 2.87
3776 4625 6.899393 TTTGGTATGATTTGCAGTTCTCTT 57.101 33.333 0.00 0.00 0.00 2.85
3783 4632 6.228273 TGATTTGCAGTTCTCTTTTCGTAG 57.772 37.500 0.00 0.00 0.00 3.51
3787 4637 8.997621 ATTTGCAGTTCTCTTTTCGTAGTATA 57.002 30.769 0.00 0.00 0.00 1.47
3808 4658 1.153524 TTTGCATGGTGCTGGAGGT 59.846 52.632 3.41 0.00 45.31 3.85
3865 4716 4.448210 TGCGGGAAAATATACTCCAGTTC 58.552 43.478 5.58 0.00 32.95 3.01
3941 4792 7.537715 TCAAGATGTTGCATTGTAATGTAAGG 58.462 34.615 8.12 0.00 40.75 2.69
3943 4794 5.418524 AGATGTTGCATTGTAATGTAAGGCA 59.581 36.000 8.12 5.20 40.75 4.75
3970 4821 6.899393 TGATTTCCTTTGTTCAGCAACTAT 57.101 33.333 0.00 0.00 36.72 2.12
3971 4822 7.994425 TGATTTCCTTTGTTCAGCAACTATA 57.006 32.000 0.00 0.00 36.72 1.31
3973 4824 7.665559 TGATTTCCTTTGTTCAGCAACTATACT 59.334 33.333 0.00 0.00 36.72 2.12
3974 4825 7.817418 TTTCCTTTGTTCAGCAACTATACTT 57.183 32.000 0.00 0.00 36.72 2.24
3975 4826 6.801539 TCCTTTGTTCAGCAACTATACTTG 57.198 37.500 0.00 0.00 36.72 3.16
3976 4827 6.530120 TCCTTTGTTCAGCAACTATACTTGA 58.470 36.000 0.00 0.00 36.72 3.02
3977 4828 6.995686 TCCTTTGTTCAGCAACTATACTTGAA 59.004 34.615 0.00 0.00 36.72 2.69
3978 4829 7.173218 TCCTTTGTTCAGCAACTATACTTGAAG 59.827 37.037 0.00 0.00 36.72 3.02
3981 4832 9.502091 TTTGTTCAGCAACTATACTTGAAGTAT 57.498 29.630 20.36 20.36 39.54 2.12
4046 4907 2.601240 TCTGAATGCCAACCCAATGA 57.399 45.000 0.00 0.00 0.00 2.57
4047 4908 3.104519 TCTGAATGCCAACCCAATGAT 57.895 42.857 0.00 0.00 0.00 2.45
4048 4909 3.025978 TCTGAATGCCAACCCAATGATC 58.974 45.455 0.00 0.00 0.00 2.92
4049 4910 3.028850 CTGAATGCCAACCCAATGATCT 58.971 45.455 0.00 0.00 0.00 2.75
4172 5035 6.379988 GCTTTTCATATTTTGGACCCCTTAGA 59.620 38.462 0.00 0.00 0.00 2.10
4173 5036 7.416777 GCTTTTCATATTTTGGACCCCTTAGAG 60.417 40.741 0.00 0.00 0.00 2.43
4174 5037 5.048846 TCATATTTTGGACCCCTTAGAGC 57.951 43.478 0.00 0.00 0.00 4.09
4175 5038 4.476846 TCATATTTTGGACCCCTTAGAGCA 59.523 41.667 0.00 0.00 0.00 4.26
4176 5039 3.825908 ATTTTGGACCCCTTAGAGCAA 57.174 42.857 0.00 0.00 0.00 3.91
4177 5040 2.579410 TTTGGACCCCTTAGAGCAAC 57.421 50.000 0.00 0.00 0.00 4.17
4178 5041 1.742308 TTGGACCCCTTAGAGCAACT 58.258 50.000 0.00 0.00 0.00 3.16
4179 5042 1.276622 TGGACCCCTTAGAGCAACTC 58.723 55.000 0.00 0.00 0.00 3.01
4180 5043 1.203313 TGGACCCCTTAGAGCAACTCT 60.203 52.381 2.23 2.23 43.83 3.24
4181 5044 2.043939 TGGACCCCTTAGAGCAACTCTA 59.956 50.000 0.16 0.16 41.50 2.43
4182 5045 2.696187 GGACCCCTTAGAGCAACTCTAG 59.304 54.545 4.64 0.00 42.92 2.43
4183 5046 2.101750 GACCCCTTAGAGCAACTCTAGC 59.898 54.545 4.64 0.00 42.92 3.42
4184 5047 2.111384 CCCCTTAGAGCAACTCTAGCA 58.889 52.381 4.64 0.00 42.92 3.49
4185 5048 2.102252 CCCCTTAGAGCAACTCTAGCAG 59.898 54.545 4.64 1.45 42.92 4.24
4186 5049 3.027412 CCCTTAGAGCAACTCTAGCAGA 58.973 50.000 4.64 0.00 42.92 4.26
4187 5050 3.181480 CCCTTAGAGCAACTCTAGCAGAC 60.181 52.174 4.64 0.00 42.92 3.51
4188 5051 3.181480 CCTTAGAGCAACTCTAGCAGACC 60.181 52.174 4.64 0.00 42.92 3.85
4189 5052 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
4190 5053 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
4191 5054 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
4192 5055 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
4193 5056 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
4194 5057 1.192146 AACTCTAGCAGACCCCGCAA 61.192 55.000 0.00 0.00 0.00 4.85
4195 5058 1.192146 ACTCTAGCAGACCCCGCAAA 61.192 55.000 0.00 0.00 0.00 3.68
4196 5059 0.036388 CTCTAGCAGACCCCGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
4197 5060 0.321298 TCTAGCAGACCCCGCAAAAC 60.321 55.000 0.00 0.00 0.00 2.43
4198 5061 1.635663 CTAGCAGACCCCGCAAAACG 61.636 60.000 0.00 0.00 43.15 3.60
4199 5062 4.700365 GCAGACCCCGCAAAACGC 62.700 66.667 0.00 0.00 41.76 4.84
4200 5063 4.038080 CAGACCCCGCAAAACGCC 62.038 66.667 0.00 0.00 41.76 5.68
4217 5080 4.715892 CGGCCCGCAAAACGCATT 62.716 61.111 0.00 0.00 42.60 3.56
4218 5081 2.356913 GGCCCGCAAAACGCATTT 60.357 55.556 0.00 0.00 42.60 2.32
4226 5089 2.541807 CAAAACGCATTTGCAGTTCG 57.458 45.000 11.24 0.00 41.79 3.95
4227 5090 0.852136 AAAACGCATTTGCAGTTCGC 59.148 45.000 11.24 0.00 42.21 4.70
4229 5092 3.526536 CGCATTTGCAGTTCGCGC 61.527 61.111 0.00 0.00 46.97 6.86
4230 5093 2.428902 GCATTTGCAGTTCGCGCA 60.429 55.556 8.75 0.00 46.97 6.09
4234 5097 3.990141 TTGCAGTTCGCGCAAAAC 58.010 50.000 8.75 11.52 45.91 2.43
4235 5098 1.587613 TTGCAGTTCGCGCAAAACC 60.588 52.632 16.51 5.74 45.91 3.27
4236 5099 3.091022 GCAGTTCGCGCAAAACCG 61.091 61.111 16.51 9.59 0.00 4.44
4237 5100 2.326550 CAGTTCGCGCAAAACCGT 59.673 55.556 16.51 0.00 0.00 4.83
4238 5101 1.298041 CAGTTCGCGCAAAACCGTT 60.298 52.632 16.51 0.00 0.00 4.44
4239 5102 0.863957 CAGTTCGCGCAAAACCGTTT 60.864 50.000 16.51 0.00 0.00 3.60
4240 5103 0.179158 AGTTCGCGCAAAACCGTTTT 60.179 45.000 16.51 3.29 0.00 2.43
4241 5104 0.641275 GTTCGCGCAAAACCGTTTTT 59.359 45.000 8.75 0.00 35.15 1.94
4267 5130 4.899239 GCGCGGGCTAGCACAGAT 62.899 66.667 18.96 0.00 36.85 2.90
4268 5131 2.963854 CGCGGGCTAGCACAGATG 60.964 66.667 18.96 0.88 36.85 2.90
4337 5200 1.088306 TTTTACGGGTTGGCTATGCG 58.912 50.000 0.00 0.00 0.00 4.73
4338 5201 0.745128 TTTACGGGTTGGCTATGCGG 60.745 55.000 0.00 0.00 0.00 5.69
4339 5202 2.596553 TTACGGGTTGGCTATGCGGG 62.597 60.000 0.00 0.00 0.00 6.13
4340 5203 4.483243 CGGGTTGGCTATGCGGGT 62.483 66.667 0.00 0.00 0.00 5.28
4341 5204 2.044352 GGGTTGGCTATGCGGGTT 60.044 61.111 0.00 0.00 0.00 4.11
4342 5205 1.680989 GGGTTGGCTATGCGGGTTT 60.681 57.895 0.00 0.00 0.00 3.27
4343 5206 1.254975 GGGTTGGCTATGCGGGTTTT 61.255 55.000 0.00 0.00 0.00 2.43
4344 5207 0.108851 GGTTGGCTATGCGGGTTTTG 60.109 55.000 0.00 0.00 0.00 2.44
4345 5208 0.735978 GTTGGCTATGCGGGTTTTGC 60.736 55.000 0.00 0.00 0.00 3.68
4346 5209 0.897863 TTGGCTATGCGGGTTTTGCT 60.898 50.000 0.00 0.00 0.00 3.91
4347 5210 1.312371 TGGCTATGCGGGTTTTGCTC 61.312 55.000 0.00 0.00 0.00 4.26
4348 5211 1.062525 GCTATGCGGGTTTTGCTCG 59.937 57.895 0.00 0.00 45.55 5.03
4349 5212 1.721487 CTATGCGGGTTTTGCTCGG 59.279 57.895 0.00 0.00 42.38 4.63
4350 5213 1.714899 CTATGCGGGTTTTGCTCGGG 61.715 60.000 0.00 0.00 42.38 5.14
4362 5225 4.389576 CTCGGGCAACAGCGCAAC 62.390 66.667 11.47 0.00 40.86 4.17
4365 5228 4.683334 GGGCAACAGCGCAACGAC 62.683 66.667 11.47 0.00 40.56 4.34
4366 5229 4.683334 GGCAACAGCGCAACGACC 62.683 66.667 11.47 0.73 0.00 4.79
4367 5230 4.683334 GCAACAGCGCAACGACCC 62.683 66.667 11.47 0.00 0.00 4.46
4368 5231 2.972505 CAACAGCGCAACGACCCT 60.973 61.111 11.47 0.00 0.00 4.34
4369 5232 2.665185 AACAGCGCAACGACCCTC 60.665 61.111 11.47 0.00 0.00 4.30
4370 5233 3.454587 AACAGCGCAACGACCCTCA 62.455 57.895 11.47 0.00 0.00 3.86
4371 5234 2.664851 CAGCGCAACGACCCTCAA 60.665 61.111 11.47 0.00 0.00 3.02
4372 5235 2.110213 AGCGCAACGACCCTCAAA 59.890 55.556 11.47 0.00 0.00 2.69
4373 5236 2.251371 GCGCAACGACCCTCAAAC 59.749 61.111 0.30 0.00 0.00 2.93
4374 5237 2.539338 GCGCAACGACCCTCAAACA 61.539 57.895 0.30 0.00 0.00 2.83
4375 5238 1.569493 CGCAACGACCCTCAAACAG 59.431 57.895 0.00 0.00 0.00 3.16
4376 5239 0.878523 CGCAACGACCCTCAAACAGA 60.879 55.000 0.00 0.00 0.00 3.41
4377 5240 1.305201 GCAACGACCCTCAAACAGAA 58.695 50.000 0.00 0.00 0.00 3.02
4378 5241 1.673920 GCAACGACCCTCAAACAGAAA 59.326 47.619 0.00 0.00 0.00 2.52
4379 5242 2.098443 GCAACGACCCTCAAACAGAAAA 59.902 45.455 0.00 0.00 0.00 2.29
4380 5243 3.428316 GCAACGACCCTCAAACAGAAAAA 60.428 43.478 0.00 0.00 0.00 1.94
4381 5244 4.102649 CAACGACCCTCAAACAGAAAAAC 58.897 43.478 0.00 0.00 0.00 2.43
4382 5245 3.617284 ACGACCCTCAAACAGAAAAACT 58.383 40.909 0.00 0.00 0.00 2.66
4398 5261 8.762149 CAGAAAAACTGCAAATCTGAAATTTG 57.238 30.769 0.00 6.21 39.85 2.32
4399 5262 8.392612 CAGAAAAACTGCAAATCTGAAATTTGT 58.607 29.630 11.03 0.00 39.85 2.83
4400 5263 8.606602 AGAAAAACTGCAAATCTGAAATTTGTC 58.393 29.630 11.03 5.58 40.19 3.18
4401 5264 7.846644 AAAACTGCAAATCTGAAATTTGTCA 57.153 28.000 11.03 8.85 40.19 3.58
4402 5265 8.441312 AAAACTGCAAATCTGAAATTTGTCAT 57.559 26.923 11.03 0.00 40.19 3.06
4403 5266 9.545105 AAAACTGCAAATCTGAAATTTGTCATA 57.455 25.926 11.03 0.00 40.19 2.15
4404 5267 8.752766 AACTGCAAATCTGAAATTTGTCATAG 57.247 30.769 11.03 7.85 40.19 2.23
4405 5268 7.318141 ACTGCAAATCTGAAATTTGTCATAGG 58.682 34.615 11.03 3.43 40.19 2.57
4406 5269 6.632909 TGCAAATCTGAAATTTGTCATAGGG 58.367 36.000 11.03 0.00 40.19 3.53
4407 5270 6.211184 TGCAAATCTGAAATTTGTCATAGGGT 59.789 34.615 11.03 0.00 40.19 4.34
4408 5271 7.099120 GCAAATCTGAAATTTGTCATAGGGTT 58.901 34.615 11.03 0.00 40.19 4.11
4409 5272 7.603784 GCAAATCTGAAATTTGTCATAGGGTTT 59.396 33.333 11.03 0.00 40.19 3.27
4410 5273 9.143631 CAAATCTGAAATTTGTCATAGGGTTTC 57.856 33.333 0.00 0.00 35.07 2.78
4411 5274 8.421249 AATCTGAAATTTGTCATAGGGTTTCA 57.579 30.769 0.00 0.00 35.19 2.69
4412 5275 7.214467 TCTGAAATTTGTCATAGGGTTTCAC 57.786 36.000 0.00 0.00 33.53 3.18
4413 5276 6.775142 TCTGAAATTTGTCATAGGGTTTCACA 59.225 34.615 0.00 0.00 33.53 3.58
4414 5277 7.286546 TCTGAAATTTGTCATAGGGTTTCACAA 59.713 33.333 0.00 0.00 33.53 3.33
4415 5278 7.786030 TGAAATTTGTCATAGGGTTTCACAAA 58.214 30.769 0.00 0.00 40.31 2.83
4416 5279 7.708752 TGAAATTTGTCATAGGGTTTCACAAAC 59.291 33.333 0.00 0.00 39.19 2.93
4417 5280 6.723298 ATTTGTCATAGGGTTTCACAAACA 57.277 33.333 1.78 0.00 43.15 2.83
4418 5281 6.531503 TTTGTCATAGGGTTTCACAAACAA 57.468 33.333 1.78 0.00 43.15 2.83
4419 5282 5.766150 TGTCATAGGGTTTCACAAACAAG 57.234 39.130 1.78 0.00 43.15 3.16
4420 5283 5.197451 TGTCATAGGGTTTCACAAACAAGT 58.803 37.500 1.78 0.00 43.15 3.16
4421 5284 5.654650 TGTCATAGGGTTTCACAAACAAGTT 59.345 36.000 1.78 0.00 43.15 2.66
4422 5285 6.183360 TGTCATAGGGTTTCACAAACAAGTTC 60.183 38.462 1.78 0.00 43.15 3.01
4423 5286 5.888724 TCATAGGGTTTCACAAACAAGTTCA 59.111 36.000 1.78 0.00 43.15 3.18
4424 5287 6.378564 TCATAGGGTTTCACAAACAAGTTCAA 59.621 34.615 1.78 0.00 43.15 2.69
4425 5288 5.476091 AGGGTTTCACAAACAAGTTCAAA 57.524 34.783 1.78 0.00 43.15 2.69
4426 5289 6.048732 AGGGTTTCACAAACAAGTTCAAAT 57.951 33.333 1.78 0.00 43.15 2.32
4427 5290 6.472016 AGGGTTTCACAAACAAGTTCAAATT 58.528 32.000 1.78 0.00 43.15 1.82
4428 5291 6.593770 AGGGTTTCACAAACAAGTTCAAATTC 59.406 34.615 1.78 0.00 43.15 2.17
4429 5292 6.370166 GGGTTTCACAAACAAGTTCAAATTCA 59.630 34.615 1.78 0.00 43.15 2.57
4430 5293 7.095017 GGGTTTCACAAACAAGTTCAAATTCAA 60.095 33.333 1.78 0.00 43.15 2.69
4431 5294 8.286097 GGTTTCACAAACAAGTTCAAATTCAAA 58.714 29.630 1.78 0.00 43.15 2.69
4432 5295 9.824534 GTTTCACAAACAAGTTCAAATTCAAAT 57.175 25.926 0.00 0.00 41.04 2.32
4433 5296 9.823098 TTTCACAAACAAGTTCAAATTCAAATG 57.177 25.926 0.00 0.00 0.00 2.32
4434 5297 8.768957 TCACAAACAAGTTCAAATTCAAATGA 57.231 26.923 0.00 0.00 0.00 2.57
4435 5298 8.655092 TCACAAACAAGTTCAAATTCAAATGAC 58.345 29.630 0.00 0.00 0.00 3.06
4436 5299 8.441608 CACAAACAAGTTCAAATTCAAATGACA 58.558 29.630 0.00 0.00 0.00 3.58
4437 5300 9.165035 ACAAACAAGTTCAAATTCAAATGACAT 57.835 25.926 0.00 0.00 0.00 3.06
4450 5313 7.462109 TTCAAATGACATAAACAGTTTGTGC 57.538 32.000 19.65 13.76 35.46 4.57
4451 5314 5.685068 TCAAATGACATAAACAGTTTGTGCG 59.315 36.000 19.65 1.39 35.46 5.34
4452 5315 2.993545 TGACATAAACAGTTTGTGCGC 58.006 42.857 19.65 13.57 35.46 6.09
4453 5316 2.356069 TGACATAAACAGTTTGTGCGCA 59.644 40.909 19.65 5.66 35.46 6.09
4454 5317 3.181496 TGACATAAACAGTTTGTGCGCAA 60.181 39.130 14.00 9.01 35.46 4.85
4455 5318 3.775202 ACATAAACAGTTTGTGCGCAAA 58.225 36.364 21.05 21.05 41.77 3.68
4456 5319 4.367450 ACATAAACAGTTTGTGCGCAAAT 58.633 34.783 26.71 13.89 45.11 2.32
4457 5320 5.524284 ACATAAACAGTTTGTGCGCAAATA 58.476 33.333 26.71 15.53 45.11 1.40
4458 5321 5.980116 ACATAAACAGTTTGTGCGCAAATAA 59.020 32.000 26.71 5.11 45.11 1.40
4459 5322 6.477033 ACATAAACAGTTTGTGCGCAAATAAA 59.523 30.769 26.71 11.74 45.11 1.40
4460 5323 5.786401 AAACAGTTTGTGCGCAAATAAAA 57.214 30.435 26.71 8.23 45.11 1.52
4461 5324 5.388225 AACAGTTTGTGCGCAAATAAAAG 57.612 34.783 26.71 16.72 45.11 2.27
4462 5325 3.245048 ACAGTTTGTGCGCAAATAAAAGC 59.755 39.130 26.71 13.62 45.11 3.51
4475 5338 6.673588 GCAAATAAAAGCGAAGTTCATTACG 58.326 36.000 3.32 0.00 0.00 3.18
4484 5347 4.394795 CGAAGTTCATTACGCAAAAGAGG 58.605 43.478 3.32 0.00 0.00 3.69
4485 5348 4.669197 CGAAGTTCATTACGCAAAAGAGGG 60.669 45.833 3.32 0.00 0.00 4.30
4486 5349 2.488153 AGTTCATTACGCAAAAGAGGGC 59.512 45.455 0.00 0.00 0.00 5.19
4487 5350 2.192664 TCATTACGCAAAAGAGGGCA 57.807 45.000 0.00 0.00 0.00 5.36
4488 5351 2.722094 TCATTACGCAAAAGAGGGCAT 58.278 42.857 0.00 0.00 0.00 4.40
4489 5352 2.423185 TCATTACGCAAAAGAGGGCATG 59.577 45.455 0.00 0.00 0.00 4.06
4490 5353 0.525761 TTACGCAAAAGAGGGCATGC 59.474 50.000 9.90 9.90 35.49 4.06
4491 5354 0.607762 TACGCAAAAGAGGGCATGCA 60.608 50.000 21.36 0.00 38.69 3.96
4492 5355 1.289694 CGCAAAAGAGGGCATGCAA 59.710 52.632 21.36 0.00 38.69 4.08
4493 5356 0.319727 CGCAAAAGAGGGCATGCAAA 60.320 50.000 21.36 0.00 38.69 3.68
4494 5357 1.435577 GCAAAAGAGGGCATGCAAAG 58.564 50.000 21.36 1.05 38.63 2.77
4495 5358 1.942586 GCAAAAGAGGGCATGCAAAGG 60.943 52.381 21.36 1.17 38.63 3.11
4496 5359 1.345415 CAAAAGAGGGCATGCAAAGGT 59.655 47.619 21.36 0.00 0.00 3.50
4497 5360 2.562298 CAAAAGAGGGCATGCAAAGGTA 59.438 45.455 21.36 0.00 0.00 3.08
4498 5361 1.839424 AAGAGGGCATGCAAAGGTAC 58.161 50.000 21.36 0.00 0.00 3.34
4499 5362 0.392998 AGAGGGCATGCAAAGGTACG 60.393 55.000 21.36 0.00 0.00 3.67
4500 5363 1.993369 GAGGGCATGCAAAGGTACGC 61.993 60.000 21.36 0.00 0.00 4.42
4501 5364 2.100216 GGCATGCAAAGGTACGCG 59.900 61.111 21.36 3.53 0.00 6.01
4502 5365 2.576847 GCATGCAAAGGTACGCGC 60.577 61.111 14.21 0.00 0.00 6.86
4503 5366 2.100216 CATGCAAAGGTACGCGCC 59.900 61.111 5.73 0.00 0.00 6.53
4504 5367 3.131478 ATGCAAAGGTACGCGCCC 61.131 61.111 5.73 6.67 0.00 6.13
4505 5368 3.910914 ATGCAAAGGTACGCGCCCA 62.911 57.895 16.71 0.70 0.00 5.36
4506 5369 3.131478 GCAAAGGTACGCGCCCAT 61.131 61.111 16.71 2.82 0.00 4.00
4507 5370 2.791256 CAAAGGTACGCGCCCATG 59.209 61.111 16.71 11.28 0.00 3.66
4508 5371 2.038269 CAAAGGTACGCGCCCATGT 61.038 57.895 16.71 0.00 0.00 3.21
4509 5372 1.743995 AAAGGTACGCGCCCATGTC 60.744 57.895 16.71 0.00 0.00 3.06
4510 5373 2.457743 AAAGGTACGCGCCCATGTCA 62.458 55.000 16.71 0.00 0.00 3.58
4511 5374 2.852495 AAGGTACGCGCCCATGTCAG 62.852 60.000 16.71 0.00 0.00 3.51
4512 5375 2.890474 GTACGCGCCCATGTCAGG 60.890 66.667 5.73 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 46 3.741388 CGCCTCTTCATAGTTAAGTGGGG 60.741 52.174 0.00 0.00 41.25 4.96
54 56 3.312828 CGATTCCTTCGCCTCTTCATAG 58.687 50.000 0.00 0.00 41.69 2.23
56 58 1.202580 CCGATTCCTTCGCCTCTTCAT 60.203 52.381 0.00 0.00 46.71 2.57
81 83 2.202676 CCTTCTGTCGCTCGGCTC 60.203 66.667 0.00 0.00 0.00 4.70
92 94 1.989165 CTTCGTTCTCGCTTCCTTCTG 59.011 52.381 0.00 0.00 36.96 3.02
93 95 1.670380 GCTTCGTTCTCGCTTCCTTCT 60.670 52.381 0.00 0.00 36.96 2.85
94 96 0.716666 GCTTCGTTCTCGCTTCCTTC 59.283 55.000 0.00 0.00 36.96 3.46
95 97 0.033504 TGCTTCGTTCTCGCTTCCTT 59.966 50.000 0.00 0.00 36.96 3.36
97 99 0.440371 CTTGCTTCGTTCTCGCTTCC 59.560 55.000 0.00 0.00 36.96 3.46
98 100 0.179238 GCTTGCTTCGTTCTCGCTTC 60.179 55.000 0.00 0.00 36.96 3.86
99 101 1.862806 GCTTGCTTCGTTCTCGCTT 59.137 52.632 0.00 0.00 36.96 4.68
100 102 2.375766 CGCTTGCTTCGTTCTCGCT 61.376 57.895 0.00 0.00 36.96 4.93
101 103 2.094724 CGCTTGCTTCGTTCTCGC 59.905 61.111 0.00 0.00 36.96 5.03
102 104 1.698898 CTCGCTTGCTTCGTTCTCG 59.301 57.895 0.00 0.00 38.55 4.04
103 105 1.417979 GCTCGCTTGCTTCGTTCTC 59.582 57.895 0.00 0.00 0.00 2.87
104 106 2.375766 CGCTCGCTTGCTTCGTTCT 61.376 57.895 0.00 0.00 0.00 3.01
105 107 2.094724 CGCTCGCTTGCTTCGTTC 59.905 61.111 0.00 0.00 0.00 3.95
106 108 4.077188 GCGCTCGCTTGCTTCGTT 62.077 61.111 0.00 0.00 38.26 3.85
109 111 4.077188 AACGCGCTCGCTTGCTTC 62.077 61.111 5.73 0.00 39.84 3.86
110 112 4.374702 CAACGCGCTCGCTTGCTT 62.375 61.111 5.73 0.00 39.84 3.91
193 195 9.778741 GGAGTAATATAGGTGATTGATTGACAA 57.221 33.333 0.00 0.00 42.95 3.18
204 206 8.204160 CACTTGTCATTGGAGTAATATAGGTGA 58.796 37.037 0.00 0.00 0.00 4.02
205 207 7.041780 GCACTTGTCATTGGAGTAATATAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
269 271 8.724229 ACGCGTGAATTATGTGTATAGTCTATA 58.276 33.333 12.93 0.00 37.26 1.31
338 343 9.199982 GAAAATTAATTGCATGGTCATATCAGG 57.800 33.333 0.39 0.00 0.00 3.86
479 486 3.514645 CCTACGCTTGTACGGTGTTAAT 58.485 45.455 9.50 0.00 37.37 1.40
495 502 1.603293 CGTGTATATGAGCGCCTACG 58.397 55.000 2.29 0.00 44.07 3.51
520 527 2.939103 GTGTGTTCATAGGGATGAGTGC 59.061 50.000 0.00 0.00 43.03 4.40
545 552 3.633986 GTGCTTATACGGTAGGGTGTACT 59.366 47.826 0.00 0.00 0.00 2.73
547 554 2.958355 GGTGCTTATACGGTAGGGTGTA 59.042 50.000 0.00 0.00 0.00 2.90
562 569 2.170166 CTCAGTCTCTCAGAGGTGCTT 58.830 52.381 0.57 0.00 0.00 3.91
567 574 1.383456 CCGGCTCAGTCTCTCAGAGG 61.383 65.000 0.57 0.00 31.57 3.69
571 578 0.395724 TATGCCGGCTCAGTCTCTCA 60.396 55.000 29.70 2.45 0.00 3.27
578 585 3.930336 TCAAGATAATATGCCGGCTCAG 58.070 45.455 29.70 12.02 0.00 3.35
586 593 8.304202 ACTTCGTCAATCTCAAGATAATATGC 57.696 34.615 0.00 0.00 33.73 3.14
587 594 9.468532 TGACTTCGTCAATCTCAAGATAATATG 57.531 33.333 0.00 0.00 39.78 1.78
599 606 4.209288 CGTCTTTTGTGACTTCGTCAATCT 59.791 41.667 0.00 0.00 44.49 2.40
614 621 3.301197 CGTCGACTATGATGCGTCTTTTG 60.301 47.826 14.70 0.92 0.00 2.44
615 622 2.852413 CGTCGACTATGATGCGTCTTTT 59.148 45.455 14.70 0.00 0.00 2.27
624 631 4.421948 GACTTGTTTCCGTCGACTATGAT 58.578 43.478 14.70 0.00 0.00 2.45
627 634 2.824341 AGGACTTGTTTCCGTCGACTAT 59.176 45.455 14.70 0.00 41.04 2.12
635 642 0.396811 AGTGGGAGGACTTGTTTCCG 59.603 55.000 0.00 0.00 41.04 4.30
637 644 5.106673 CGATTTTAGTGGGAGGACTTGTTTC 60.107 44.000 0.00 0.00 0.00 2.78
643 650 1.906574 TGCGATTTTAGTGGGAGGACT 59.093 47.619 0.00 0.00 0.00 3.85
644 651 2.396590 TGCGATTTTAGTGGGAGGAC 57.603 50.000 0.00 0.00 0.00 3.85
651 658 0.042188 CCGGCGATGCGATTTTAGTG 60.042 55.000 9.30 0.00 0.00 2.74
653 660 0.934496 TTCCGGCGATGCGATTTTAG 59.066 50.000 9.30 0.00 0.00 1.85
655 662 0.738389 ATTTCCGGCGATGCGATTTT 59.262 45.000 9.30 0.00 0.00 1.82
659 666 1.153449 AGAATTTCCGGCGATGCGA 60.153 52.632 9.30 0.00 0.00 5.10
678 685 6.798959 GCTCGCATTATTTCTGGATTTATGTC 59.201 38.462 0.00 0.00 0.00 3.06
679 686 6.262944 TGCTCGCATTATTTCTGGATTTATGT 59.737 34.615 0.00 0.00 0.00 2.29
680 687 6.580041 GTGCTCGCATTATTTCTGGATTTATG 59.420 38.462 0.00 0.00 0.00 1.90
687 698 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
689 700 2.292267 CCTGGTGCTCGCATTATTTCT 58.708 47.619 0.00 0.00 0.00 2.52
707 718 0.392193 CGAGGAGCAATGTCAAGCCT 60.392 55.000 0.00 0.00 0.00 4.58
744 756 4.741235 GCATGCTTTGATTTATGATGGCCA 60.741 41.667 8.56 8.56 0.00 5.36
752 764 5.198965 AGGTGAGAGCATGCTTTGATTTAT 58.801 37.500 23.61 1.51 0.00 1.40
762 774 1.404391 CATTGGAAGGTGAGAGCATGC 59.596 52.381 10.51 10.51 0.00 4.06
775 787 2.552315 GCTCTTTCACGAACCATTGGAA 59.448 45.455 10.37 0.00 0.00 3.53
777 789 1.879380 TGCTCTTTCACGAACCATTGG 59.121 47.619 0.00 0.00 0.00 3.16
778 790 3.189080 TCATGCTCTTTCACGAACCATTG 59.811 43.478 0.00 0.00 0.00 2.82
779 791 3.411446 TCATGCTCTTTCACGAACCATT 58.589 40.909 0.00 0.00 0.00 3.16
781 793 2.416747 CTCATGCTCTTTCACGAACCA 58.583 47.619 0.00 0.00 0.00 3.67
784 802 1.442769 GCCTCATGCTCTTTCACGAA 58.557 50.000 0.00 0.00 36.87 3.85
796 814 1.131126 GATGTCAAACACCGCCTCATG 59.869 52.381 0.00 0.00 0.00 3.07
797 815 1.003580 AGATGTCAAACACCGCCTCAT 59.996 47.619 0.00 0.00 0.00 2.90
798 816 0.396435 AGATGTCAAACACCGCCTCA 59.604 50.000 0.00 0.00 0.00 3.86
799 817 1.079503 GAGATGTCAAACACCGCCTC 58.920 55.000 0.00 0.00 0.00 4.70
800 818 0.687354 AGAGATGTCAAACACCGCCT 59.313 50.000 0.00 0.00 0.00 5.52
802 820 3.585862 TCTTAGAGATGTCAAACACCGC 58.414 45.455 0.00 0.00 0.00 5.68
803 821 3.614616 GCTCTTAGAGATGTCAAACACCG 59.385 47.826 14.14 0.00 0.00 4.94
804 822 3.614616 CGCTCTTAGAGATGTCAAACACC 59.385 47.826 14.14 0.00 0.00 4.16
897 918 3.686016 ACTGCCTGGAATACGTTTTCAT 58.314 40.909 18.46 0.00 0.00 2.57
903 924 0.179119 GCGTACTGCCTGGAATACGT 60.179 55.000 19.29 0.00 41.83 3.57
940 961 1.315257 CCTGTTCTGCGGAAATGGGG 61.315 60.000 10.18 6.15 32.81 4.96
953 974 1.141234 GTCGGATCCGGACCTGTTC 59.859 63.158 32.79 0.00 40.25 3.18
1046 1067 4.454319 CGCTCTCTGGCTGCTGCT 62.454 66.667 15.64 0.00 39.59 4.24
1275 1556 1.847798 TAGCGGCCTGGGTGATTGTT 61.848 55.000 0.00 0.00 0.00 2.83
1278 1559 1.224592 CTTAGCGGCCTGGGTGATT 59.775 57.895 0.00 0.00 0.00 2.57
1279 1560 2.746375 CCTTAGCGGCCTGGGTGAT 61.746 63.158 0.00 0.00 0.00 3.06
1299 1580 2.686106 GTGGGGGTAGAAGGCGGA 60.686 66.667 0.00 0.00 0.00 5.54
1301 1582 0.463833 GAATGTGGGGGTAGAAGGCG 60.464 60.000 0.00 0.00 0.00 5.52
1302 1583 0.106669 GGAATGTGGGGGTAGAAGGC 60.107 60.000 0.00 0.00 0.00 4.35
1307 1588 1.353394 GGAGGGGAATGTGGGGGTAG 61.353 65.000 0.00 0.00 0.00 3.18
1308 1589 1.308392 GGAGGGGAATGTGGGGGTA 60.308 63.158 0.00 0.00 0.00 3.69
1309 1590 2.617215 GGAGGGGAATGTGGGGGT 60.617 66.667 0.00 0.00 0.00 4.95
1315 1596 1.749334 GCGAGATCGGAGGGGAATGT 61.749 60.000 4.18 0.00 40.23 2.71
1333 1621 1.622232 GAGCTTGAGCAAATTTCGGC 58.378 50.000 5.70 0.00 45.16 5.54
1346 1634 4.701956 AATACAAATCAACCCGAGCTTG 57.298 40.909 0.00 0.00 0.00 4.01
1354 1642 6.426633 CACCAAGGGAAAAATACAAATCAACC 59.573 38.462 0.00 0.00 0.00 3.77
1355 1643 6.989759 ACACCAAGGGAAAAATACAAATCAAC 59.010 34.615 0.00 0.00 0.00 3.18
1356 1644 7.130681 ACACCAAGGGAAAAATACAAATCAA 57.869 32.000 0.00 0.00 0.00 2.57
1357 1645 6.739331 ACACCAAGGGAAAAATACAAATCA 57.261 33.333 0.00 0.00 0.00 2.57
1358 1646 7.177744 TCCTACACCAAGGGAAAAATACAAATC 59.822 37.037 0.00 0.00 37.24 2.17
1374 1662 2.024176 TCCAGCTCTTCCTACACCAA 57.976 50.000 0.00 0.00 0.00 3.67
1377 1665 2.420687 CCCATTCCAGCTCTTCCTACAC 60.421 54.545 0.00 0.00 0.00 2.90
1501 1795 5.121380 ACATTCATCTGACCCAAGCTAAT 57.879 39.130 0.00 0.00 0.00 1.73
1539 1833 2.004808 AATGCGCCGACGAGAGATCA 62.005 55.000 4.18 0.00 43.93 2.92
1543 1837 2.094659 ACAAATGCGCCGACGAGAG 61.095 57.895 4.18 0.00 43.93 3.20
1625 1920 1.819208 CAATGCCCGGATGCTCGAA 60.819 57.895 0.73 0.00 0.00 3.71
1706 2001 0.463620 AACGCCACAAAGCAAATGGT 59.536 45.000 0.00 0.00 35.79 3.55
1842 2137 9.476202 GCAAACAACTTAAAACTCATTATCCTT 57.524 29.630 0.00 0.00 0.00 3.36
1986 2419 3.959495 ACAGGGAAAGGATATGTGCAT 57.041 42.857 0.00 0.00 0.00 3.96
2145 2578 6.863126 CCACTGAATCAACAACCTTGTAATTC 59.137 38.462 13.97 13.97 41.31 2.17
2187 2620 5.248934 TCCAATTTTTCAGCCTTCATGGAAT 59.751 36.000 0.00 0.00 38.35 3.01
2190 2623 4.540359 TCCAATTTTTCAGCCTTCATGG 57.460 40.909 0.00 0.00 39.35 3.66
2236 2669 4.471904 TGACTCAGTTTCAGTCACACTT 57.528 40.909 0.00 0.00 44.33 3.16
2394 2832 2.250031 TGGTTGATGCAGCTTCCAAAT 58.750 42.857 14.21 0.00 0.00 2.32
2434 2872 6.586844 GGTCAGAGTTGATCAACAAGTAGTAC 59.413 42.308 33.92 22.02 43.47 2.73
2449 2887 2.245159 TGCTCAACAGGTCAGAGTTG 57.755 50.000 0.00 0.00 44.84 3.16
2539 2977 9.457436 AGGTACCATAAACGAACTTCATAAAAT 57.543 29.630 15.94 0.00 0.00 1.82
2625 3070 4.041691 AGGGTCTACAATACAGCAAGTTGT 59.958 41.667 4.48 0.00 39.26 3.32
2658 3103 3.519107 TGTGATTCACTTCAGCCTGGATA 59.481 43.478 17.26 0.00 35.11 2.59
2744 3189 6.970484 ACAAATGTCTTGGTGTTCAATCTAC 58.030 36.000 0.00 0.00 34.45 2.59
2750 3195 7.332182 GGTTTAAAACAAATGTCTTGGTGTTCA 59.668 33.333 0.00 0.00 33.18 3.18
2772 3217 8.664669 ACATAGAAATTACAATTCCCAGGTTT 57.335 30.769 0.00 0.00 0.00 3.27
2812 3257 3.118408 TCCTGGAACGCATAAGCAATAGT 60.118 43.478 0.00 0.00 42.27 2.12
2813 3258 3.466836 TCCTGGAACGCATAAGCAATAG 58.533 45.455 0.00 0.00 42.27 1.73
2820 3265 1.538204 GCTCGATCCTGGAACGCATAA 60.538 52.381 20.05 3.67 0.00 1.90
2825 3270 1.880340 GCAGCTCGATCCTGGAACG 60.880 63.158 18.98 18.98 0.00 3.95
3076 3528 4.993029 TTTCCACACCAAATTCGAAGTT 57.007 36.364 4.77 4.77 0.00 2.66
3135 3587 6.272324 TCAAGAATTCCCTTGAGACCTAAGAA 59.728 38.462 0.65 0.00 45.25 2.52
3158 3610 1.348696 TGTGCTCTTGGAAGCTGATCA 59.651 47.619 0.00 0.00 42.94 2.92
3227 3679 8.386606 GTTGAAGAGAATAGTAGTGCAATGAAG 58.613 37.037 0.00 0.00 0.00 3.02
3481 4327 4.201812 ACGCCATAATTCACAATCTTCGTG 60.202 41.667 0.00 0.00 35.63 4.35
3516 4362 0.692476 CAGGGACAATGGTGGAGACA 59.308 55.000 0.00 0.00 38.70 3.41
3682 4531 1.802960 GAGTGTCATCTGTTGCTGGTG 59.197 52.381 0.00 0.00 0.00 4.17
3776 4625 6.457663 GCACCATGCAAACATATACTACGAAA 60.458 38.462 0.00 0.00 44.26 3.46
3808 4658 5.939764 AACTGGAGCATATAGTGTCAGAA 57.060 39.130 0.00 0.00 0.00 3.02
3914 4765 8.741101 TTACATTACAATGCAACATCTTGAAC 57.259 30.769 4.06 0.00 40.04 3.18
3941 4792 3.701241 TGAACAAAGGAAATCAACGTGC 58.299 40.909 0.00 0.00 0.00 5.34
3943 4794 3.380004 TGCTGAACAAAGGAAATCAACGT 59.620 39.130 0.00 0.00 0.00 3.99
4009 4870 7.655490 CATTCAGAAACCTCTTTTCATCTTGT 58.345 34.615 0.00 0.00 45.50 3.16
4012 4873 5.184671 GGCATTCAGAAACCTCTTTTCATCT 59.815 40.000 0.00 0.00 45.50 2.90
4013 4874 5.047802 TGGCATTCAGAAACCTCTTTTCATC 60.048 40.000 7.03 0.00 45.50 2.92
4153 5016 4.792068 TGCTCTAAGGGGTCCAAAATATG 58.208 43.478 0.00 0.00 0.00 1.78
4172 5035 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
4173 5036 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
4174 5037 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
4175 5038 1.192146 TTGCGGGGTCTGCTAGAGTT 61.192 55.000 0.00 0.00 0.00 3.01
4176 5039 1.192146 TTTGCGGGGTCTGCTAGAGT 61.192 55.000 0.00 0.00 0.00 3.24
4177 5040 0.036388 TTTTGCGGGGTCTGCTAGAG 60.036 55.000 0.00 0.00 0.00 2.43
4178 5041 0.321298 GTTTTGCGGGGTCTGCTAGA 60.321 55.000 0.00 0.00 0.00 2.43
4179 5042 1.635663 CGTTTTGCGGGGTCTGCTAG 61.636 60.000 0.30 0.00 36.85 3.42
4180 5043 1.669760 CGTTTTGCGGGGTCTGCTA 60.670 57.895 0.30 0.00 36.85 3.49
4181 5044 2.978010 CGTTTTGCGGGGTCTGCT 60.978 61.111 0.30 0.00 36.85 4.24
4182 5045 4.700365 GCGTTTTGCGGGGTCTGC 62.700 66.667 0.00 0.00 41.69 4.26
4207 5070 1.395820 GCGAACTGCAAATGCGTTTTG 60.396 47.619 0.00 4.39 46.22 2.44
4208 5071 0.852136 GCGAACTGCAAATGCGTTTT 59.148 45.000 0.00 2.47 45.83 2.43
4209 5072 1.268113 CGCGAACTGCAAATGCGTTT 61.268 50.000 0.00 0.00 46.97 3.60
4210 5073 1.725625 CGCGAACTGCAAATGCGTT 60.726 52.632 0.00 12.86 46.97 4.84
4211 5074 2.127270 CGCGAACTGCAAATGCGT 60.127 55.556 0.00 0.00 46.97 5.24
4213 5076 2.428902 TGCGCGAACTGCAAATGC 60.429 55.556 12.10 0.00 46.97 3.56
4218 5081 2.025441 GGTTTTGCGCGAACTGCA 59.975 55.556 12.10 0.00 46.97 4.41
4219 5082 3.091022 CGGTTTTGCGCGAACTGC 61.091 61.111 12.10 10.64 41.47 4.40
4220 5083 0.863957 AAACGGTTTTGCGCGAACTG 60.864 50.000 25.01 25.01 38.90 3.16
4221 5084 0.179158 AAAACGGTTTTGCGCGAACT 60.179 45.000 17.42 4.85 0.00 3.01
4222 5085 0.641275 AAAAACGGTTTTGCGCGAAC 59.359 45.000 18.69 13.55 35.58 3.95
4223 5086 0.640768 CAAAAACGGTTTTGCGCGAA 59.359 45.000 24.42 5.81 45.20 4.70
4224 5087 2.279469 CAAAAACGGTTTTGCGCGA 58.721 47.368 24.42 0.00 45.20 5.87
4225 5088 4.841848 CAAAAACGGTTTTGCGCG 57.158 50.000 24.42 0.00 45.20 6.86
4250 5113 4.899239 ATCTGTGCTAGCCCGCGC 62.899 66.667 13.29 0.00 40.67 6.86
4251 5114 2.963854 CATCTGTGCTAGCCCGCG 60.964 66.667 13.29 0.00 0.00 6.46
4317 5180 1.469308 CGCATAGCCAACCCGTAAAAA 59.531 47.619 0.00 0.00 0.00 1.94
4318 5181 1.088306 CGCATAGCCAACCCGTAAAA 58.912 50.000 0.00 0.00 0.00 1.52
4319 5182 0.745128 CCGCATAGCCAACCCGTAAA 60.745 55.000 0.00 0.00 0.00 2.01
4320 5183 1.153329 CCGCATAGCCAACCCGTAA 60.153 57.895 0.00 0.00 0.00 3.18
4321 5184 2.502093 CCGCATAGCCAACCCGTA 59.498 61.111 0.00 0.00 0.00 4.02
4322 5185 4.483243 CCCGCATAGCCAACCCGT 62.483 66.667 0.00 0.00 0.00 5.28
4323 5186 3.987954 AACCCGCATAGCCAACCCG 62.988 63.158 0.00 0.00 0.00 5.28
4324 5187 1.254975 AAAACCCGCATAGCCAACCC 61.255 55.000 0.00 0.00 0.00 4.11
4325 5188 0.108851 CAAAACCCGCATAGCCAACC 60.109 55.000 0.00 0.00 0.00 3.77
4326 5189 0.735978 GCAAAACCCGCATAGCCAAC 60.736 55.000 0.00 0.00 0.00 3.77
4327 5190 0.897863 AGCAAAACCCGCATAGCCAA 60.898 50.000 0.00 0.00 0.00 4.52
4328 5191 1.304052 AGCAAAACCCGCATAGCCA 60.304 52.632 0.00 0.00 0.00 4.75
4329 5192 1.433471 GAGCAAAACCCGCATAGCC 59.567 57.895 0.00 0.00 0.00 3.93
4330 5193 1.062525 CGAGCAAAACCCGCATAGC 59.937 57.895 0.00 0.00 0.00 2.97
4331 5194 1.714899 CCCGAGCAAAACCCGCATAG 61.715 60.000 0.00 0.00 0.00 2.23
4332 5195 1.747367 CCCGAGCAAAACCCGCATA 60.747 57.895 0.00 0.00 0.00 3.14
4333 5196 3.061848 CCCGAGCAAAACCCGCAT 61.062 61.111 0.00 0.00 0.00 4.73
4345 5208 4.389576 GTTGCGCTGTTGCCCGAG 62.390 66.667 9.73 0.00 35.36 4.63
4348 5211 4.683334 GTCGTTGCGCTGTTGCCC 62.683 66.667 9.73 0.00 35.36 5.36
4349 5212 4.683334 GGTCGTTGCGCTGTTGCC 62.683 66.667 9.73 1.68 35.36 4.52
4350 5213 4.683334 GGGTCGTTGCGCTGTTGC 62.683 66.667 9.73 0.00 0.00 4.17
4351 5214 2.954753 GAGGGTCGTTGCGCTGTTG 61.955 63.158 9.73 0.00 0.00 3.33
4352 5215 2.665185 GAGGGTCGTTGCGCTGTT 60.665 61.111 9.73 0.00 0.00 3.16
4353 5216 2.933878 TTTGAGGGTCGTTGCGCTGT 62.934 55.000 9.73 0.00 0.00 4.40
4354 5217 2.250939 TTTGAGGGTCGTTGCGCTG 61.251 57.895 9.73 0.00 0.00 5.18
4355 5218 2.110213 TTTGAGGGTCGTTGCGCT 59.890 55.556 9.73 0.00 0.00 5.92
4356 5219 2.251371 GTTTGAGGGTCGTTGCGC 59.749 61.111 0.00 0.00 0.00 6.09
4357 5220 0.878523 TCTGTTTGAGGGTCGTTGCG 60.879 55.000 0.00 0.00 0.00 4.85
4358 5221 1.305201 TTCTGTTTGAGGGTCGTTGC 58.695 50.000 0.00 0.00 0.00 4.17
4359 5222 4.102649 GTTTTTCTGTTTGAGGGTCGTTG 58.897 43.478 0.00 0.00 0.00 4.10
4360 5223 4.014406 AGTTTTTCTGTTTGAGGGTCGTT 58.986 39.130 0.00 0.00 0.00 3.85
4361 5224 3.377172 CAGTTTTTCTGTTTGAGGGTCGT 59.623 43.478 0.00 0.00 39.17 4.34
4362 5225 3.792124 GCAGTTTTTCTGTTTGAGGGTCG 60.792 47.826 0.00 0.00 45.23 4.79
4363 5226 3.130340 TGCAGTTTTTCTGTTTGAGGGTC 59.870 43.478 0.00 0.00 45.23 4.46
4364 5227 3.096092 TGCAGTTTTTCTGTTTGAGGGT 58.904 40.909 0.00 0.00 45.23 4.34
4365 5228 3.799281 TGCAGTTTTTCTGTTTGAGGG 57.201 42.857 0.00 0.00 45.23 4.30
4366 5229 6.019318 CAGATTTGCAGTTTTTCTGTTTGAGG 60.019 38.462 0.00 0.00 45.23 3.86
4367 5230 6.753279 TCAGATTTGCAGTTTTTCTGTTTGAG 59.247 34.615 10.96 0.00 45.23 3.02
4368 5231 6.629128 TCAGATTTGCAGTTTTTCTGTTTGA 58.371 32.000 10.96 0.00 45.23 2.69
4369 5232 6.890663 TCAGATTTGCAGTTTTTCTGTTTG 57.109 33.333 10.96 0.00 45.23 2.93
4370 5233 7.903995 TTTCAGATTTGCAGTTTTTCTGTTT 57.096 28.000 10.96 0.00 45.23 2.83
4371 5234 8.496707 AATTTCAGATTTGCAGTTTTTCTGTT 57.503 26.923 10.96 0.74 45.23 3.16
4372 5235 8.392612 CAAATTTCAGATTTGCAGTTTTTCTGT 58.607 29.630 10.96 0.00 45.23 3.41
4373 5236 8.392612 ACAAATTTCAGATTTGCAGTTTTTCTG 58.607 29.630 10.47 6.95 46.12 3.02
4374 5237 8.496707 ACAAATTTCAGATTTGCAGTTTTTCT 57.503 26.923 10.47 0.00 41.36 2.52
4375 5238 8.389603 TGACAAATTTCAGATTTGCAGTTTTTC 58.610 29.630 10.47 1.87 41.36 2.29
4376 5239 8.266392 TGACAAATTTCAGATTTGCAGTTTTT 57.734 26.923 10.47 0.00 41.36 1.94
4377 5240 7.846644 TGACAAATTTCAGATTTGCAGTTTT 57.153 28.000 10.47 0.00 41.36 2.43
4378 5241 9.199982 CTATGACAAATTTCAGATTTGCAGTTT 57.800 29.630 10.47 0.00 41.36 2.66
4379 5242 7.816031 CCTATGACAAATTTCAGATTTGCAGTT 59.184 33.333 10.47 1.64 41.36 3.16
4380 5243 7.318141 CCTATGACAAATTTCAGATTTGCAGT 58.682 34.615 10.47 1.63 41.36 4.40
4381 5244 6.755141 CCCTATGACAAATTTCAGATTTGCAG 59.245 38.462 10.47 4.59 41.36 4.41
4382 5245 6.211184 ACCCTATGACAAATTTCAGATTTGCA 59.789 34.615 10.47 9.84 41.36 4.08
4383 5246 6.633856 ACCCTATGACAAATTTCAGATTTGC 58.366 36.000 10.47 5.58 41.36 3.68
4384 5247 9.143631 GAAACCCTATGACAAATTTCAGATTTG 57.856 33.333 9.30 9.30 42.81 2.32
4385 5248 8.869109 TGAAACCCTATGACAAATTTCAGATTT 58.131 29.630 0.00 0.00 32.61 2.17
4386 5249 8.306761 GTGAAACCCTATGACAAATTTCAGATT 58.693 33.333 0.00 0.00 36.89 2.40
4387 5250 7.451255 TGTGAAACCCTATGACAAATTTCAGAT 59.549 33.333 0.00 0.00 36.89 2.90
4388 5251 6.775142 TGTGAAACCCTATGACAAATTTCAGA 59.225 34.615 0.00 0.00 36.89 3.27
4389 5252 6.980593 TGTGAAACCCTATGACAAATTTCAG 58.019 36.000 0.00 0.00 36.89 3.02
4390 5253 6.968263 TGTGAAACCCTATGACAAATTTCA 57.032 33.333 0.00 0.00 34.57 2.69
4391 5254 7.708752 TGTTTGTGAAACCCTATGACAAATTTC 59.291 33.333 0.00 0.00 40.67 2.17
4392 5255 7.560368 TGTTTGTGAAACCCTATGACAAATTT 58.440 30.769 0.00 0.00 40.67 1.82
4393 5256 7.118496 TGTTTGTGAAACCCTATGACAAATT 57.882 32.000 0.00 0.00 40.67 1.82
4394 5257 6.723298 TGTTTGTGAAACCCTATGACAAAT 57.277 33.333 0.00 0.00 40.67 2.32
4395 5258 6.153680 ACTTGTTTGTGAAACCCTATGACAAA 59.846 34.615 0.00 0.00 40.67 2.83
4396 5259 5.654650 ACTTGTTTGTGAAACCCTATGACAA 59.345 36.000 0.00 0.00 40.67 3.18
4397 5260 5.197451 ACTTGTTTGTGAAACCCTATGACA 58.803 37.500 0.00 0.00 40.67 3.58
4398 5261 5.767816 ACTTGTTTGTGAAACCCTATGAC 57.232 39.130 0.00 0.00 40.67 3.06
4399 5262 5.888724 TGAACTTGTTTGTGAAACCCTATGA 59.111 36.000 0.00 0.00 40.67 2.15
4400 5263 6.142818 TGAACTTGTTTGTGAAACCCTATG 57.857 37.500 0.00 0.00 40.67 2.23
4401 5264 6.783708 TTGAACTTGTTTGTGAAACCCTAT 57.216 33.333 0.00 0.00 40.67 2.57
4402 5265 6.591750 TTTGAACTTGTTTGTGAAACCCTA 57.408 33.333 0.00 0.00 40.67 3.53
4403 5266 5.476091 TTTGAACTTGTTTGTGAAACCCT 57.524 34.783 0.00 0.00 40.67 4.34
4404 5267 6.370166 TGAATTTGAACTTGTTTGTGAAACCC 59.630 34.615 0.00 0.00 40.67 4.11
4405 5268 7.357951 TGAATTTGAACTTGTTTGTGAAACC 57.642 32.000 0.00 0.00 40.67 3.27
4406 5269 9.824534 ATTTGAATTTGAACTTGTTTGTGAAAC 57.175 25.926 0.00 0.00 41.73 2.78
4407 5270 9.823098 CATTTGAATTTGAACTTGTTTGTGAAA 57.177 25.926 0.00 0.00 0.00 2.69
4408 5271 9.212641 TCATTTGAATTTGAACTTGTTTGTGAA 57.787 25.926 0.00 0.00 0.00 3.18
4409 5272 8.655092 GTCATTTGAATTTGAACTTGTTTGTGA 58.345 29.630 0.00 0.00 0.00 3.58
4410 5273 8.441608 TGTCATTTGAATTTGAACTTGTTTGTG 58.558 29.630 0.00 0.00 0.00 3.33
4411 5274 8.545229 TGTCATTTGAATTTGAACTTGTTTGT 57.455 26.923 0.00 0.00 0.00 2.83
4424 5287 8.550376 GCACAAACTGTTTATGTCATTTGAATT 58.450 29.630 12.58 0.00 32.63 2.17
4425 5288 7.096106 CGCACAAACTGTTTATGTCATTTGAAT 60.096 33.333 12.58 0.00 32.63 2.57
4426 5289 6.198029 CGCACAAACTGTTTATGTCATTTGAA 59.802 34.615 12.58 0.00 32.63 2.69
4427 5290 5.685068 CGCACAAACTGTTTATGTCATTTGA 59.315 36.000 12.58 0.00 32.63 2.69
4428 5291 5.610124 GCGCACAAACTGTTTATGTCATTTG 60.610 40.000 12.58 0.00 34.10 2.32
4429 5292 4.444056 GCGCACAAACTGTTTATGTCATTT 59.556 37.500 12.58 0.00 0.00 2.32
4430 5293 3.980775 GCGCACAAACTGTTTATGTCATT 59.019 39.130 12.58 0.00 0.00 2.57
4431 5294 3.004210 TGCGCACAAACTGTTTATGTCAT 59.996 39.130 5.66 0.00 0.00 3.06
4432 5295 2.356069 TGCGCACAAACTGTTTATGTCA 59.644 40.909 5.66 8.47 0.00 3.58
4433 5296 2.993545 TGCGCACAAACTGTTTATGTC 58.006 42.857 5.66 6.29 0.00 3.06
4434 5297 3.428746 TTGCGCACAAACTGTTTATGT 57.571 38.095 11.12 2.99 31.21 2.29
4451 5314 6.673588 CGTAATGAACTTCGCTTTTATTTGC 58.326 36.000 0.00 0.00 0.00 3.68
4452 5315 6.673588 GCGTAATGAACTTCGCTTTTATTTG 58.326 36.000 0.00 0.00 44.28 2.32
4453 5316 6.848470 GCGTAATGAACTTCGCTTTTATTT 57.152 33.333 0.00 0.00 44.28 1.40
4462 5325 4.394795 CCTCTTTTGCGTAATGAACTTCG 58.605 43.478 0.00 0.00 0.00 3.79
4463 5326 4.723248 CCCTCTTTTGCGTAATGAACTTC 58.277 43.478 0.00 0.00 0.00 3.01
4464 5327 3.057526 GCCCTCTTTTGCGTAATGAACTT 60.058 43.478 0.00 0.00 0.00 2.66
4465 5328 2.488153 GCCCTCTTTTGCGTAATGAACT 59.512 45.455 0.00 0.00 0.00 3.01
4466 5329 2.227865 TGCCCTCTTTTGCGTAATGAAC 59.772 45.455 0.00 0.00 0.00 3.18
4467 5330 2.509569 TGCCCTCTTTTGCGTAATGAA 58.490 42.857 0.00 0.00 0.00 2.57
4468 5331 2.192664 TGCCCTCTTTTGCGTAATGA 57.807 45.000 0.00 0.00 0.00 2.57
4469 5332 2.801063 CATGCCCTCTTTTGCGTAATG 58.199 47.619 0.00 0.00 0.00 1.90
4470 5333 1.134946 GCATGCCCTCTTTTGCGTAAT 59.865 47.619 6.36 0.00 0.00 1.89
4471 5334 0.525761 GCATGCCCTCTTTTGCGTAA 59.474 50.000 6.36 0.00 0.00 3.18
4472 5335 0.607762 TGCATGCCCTCTTTTGCGTA 60.608 50.000 16.68 0.00 37.92 4.42
4473 5336 1.462731 TTGCATGCCCTCTTTTGCGT 61.463 50.000 16.68 0.00 37.92 5.24
4474 5337 0.319727 TTTGCATGCCCTCTTTTGCG 60.320 50.000 16.68 0.00 37.92 4.85
4475 5338 1.435577 CTTTGCATGCCCTCTTTTGC 58.564 50.000 16.68 0.00 35.67 3.68
4476 5339 1.345415 ACCTTTGCATGCCCTCTTTTG 59.655 47.619 16.68 0.00 0.00 2.44
4477 5340 1.720781 ACCTTTGCATGCCCTCTTTT 58.279 45.000 16.68 0.00 0.00 2.27
4478 5341 2.171003 GTACCTTTGCATGCCCTCTTT 58.829 47.619 16.68 0.00 0.00 2.52
4479 5342 1.839424 GTACCTTTGCATGCCCTCTT 58.161 50.000 16.68 0.00 0.00 2.85
4480 5343 0.392998 CGTACCTTTGCATGCCCTCT 60.393 55.000 16.68 0.00 0.00 3.69
4481 5344 1.993369 GCGTACCTTTGCATGCCCTC 61.993 60.000 16.68 0.00 0.00 4.30
4482 5345 2.046285 GCGTACCTTTGCATGCCCT 61.046 57.895 16.68 0.00 0.00 5.19
4483 5346 2.489751 GCGTACCTTTGCATGCCC 59.510 61.111 16.68 0.00 0.00 5.36
4484 5347 2.100216 CGCGTACCTTTGCATGCC 59.900 61.111 16.68 0.00 0.00 4.40
4485 5348 2.576847 GCGCGTACCTTTGCATGC 60.577 61.111 11.82 11.82 0.00 4.06
4486 5349 2.100216 GGCGCGTACCTTTGCATG 59.900 61.111 8.43 0.00 0.00 4.06
4487 5350 3.131478 GGGCGCGTACCTTTGCAT 61.131 61.111 8.43 0.00 0.00 3.96
4488 5351 3.910914 ATGGGCGCGTACCTTTGCA 62.911 57.895 19.91 3.29 0.00 4.08
4489 5352 3.131478 ATGGGCGCGTACCTTTGC 61.131 61.111 19.91 0.00 0.00 3.68
4490 5353 1.977594 GACATGGGCGCGTACCTTTG 61.978 60.000 19.91 18.25 0.00 2.77
4491 5354 1.743995 GACATGGGCGCGTACCTTT 60.744 57.895 19.91 7.59 0.00 3.11
4492 5355 2.125269 GACATGGGCGCGTACCTT 60.125 61.111 19.91 12.62 0.00 3.50
4493 5356 3.371097 CTGACATGGGCGCGTACCT 62.371 63.158 19.91 3.22 0.00 3.08
4494 5357 2.890474 CTGACATGGGCGCGTACC 60.890 66.667 8.43 11.77 0.00 3.34
4495 5358 2.890474 CCTGACATGGGCGCGTAC 60.890 66.667 8.43 0.80 0.00 3.67
4496 5359 4.830765 GCCTGACATGGGCGCGTA 62.831 66.667 8.43 0.00 40.19 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.