Multiple sequence alignment - TraesCS6A01G013500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G013500 | chr6A | 100.000 | 4193 | 0 | 0 | 1 | 4193 | 6698199 | 6702391 | 0.000000e+00 | 7744.0 |
1 | TraesCS6A01G013500 | chr6A | 81.017 | 1554 | 276 | 15 | 1623 | 3171 | 5940895 | 5942434 | 0.000000e+00 | 1218.0 |
2 | TraesCS6A01G013500 | chr6A | 80.711 | 1576 | 290 | 11 | 1623 | 3191 | 5901941 | 5903509 | 0.000000e+00 | 1214.0 |
3 | TraesCS6A01G013500 | chr6A | 80.257 | 1555 | 295 | 12 | 1623 | 3171 | 5917921 | 5919469 | 0.000000e+00 | 1160.0 |
4 | TraesCS6A01G013500 | chr6A | 77.389 | 1371 | 242 | 34 | 506 | 1837 | 5939552 | 5940893 | 0.000000e+00 | 752.0 |
5 | TraesCS6A01G013500 | chr6A | 79.030 | 639 | 114 | 15 | 1006 | 1640 | 5901264 | 5901886 | 1.800000e-113 | 420.0 |
6 | TraesCS6A01G013500 | chr6A | 80.081 | 492 | 72 | 12 | 508 | 984 | 5900723 | 5901203 | 4.010000e-90 | 342.0 |
7 | TraesCS6A01G013500 | chr6A | 77.176 | 517 | 84 | 12 | 506 | 1002 | 5916502 | 5917004 | 1.920000e-68 | 270.0 |
8 | TraesCS6A01G013500 | chr6D | 95.747 | 3809 | 109 | 20 | 221 | 3999 | 7031980 | 7035765 | 0.000000e+00 | 6087.0 |
9 | TraesCS6A01G013500 | chr6D | 81.206 | 1559 | 284 | 7 | 1623 | 3178 | 6371597 | 6373149 | 0.000000e+00 | 1247.0 |
10 | TraesCS6A01G013500 | chr6D | 80.779 | 1566 | 285 | 16 | 1623 | 3180 | 6353193 | 6354750 | 0.000000e+00 | 1210.0 |
11 | TraesCS6A01G013500 | chr6D | 80.554 | 1553 | 285 | 15 | 1623 | 3171 | 6426528 | 6428067 | 0.000000e+00 | 1179.0 |
12 | TraesCS6A01G013500 | chr6D | 80.359 | 1558 | 288 | 17 | 1623 | 3171 | 6497721 | 6499269 | 0.000000e+00 | 1166.0 |
13 | TraesCS6A01G013500 | chr6D | 81.890 | 1016 | 178 | 6 | 2159 | 3171 | 6465715 | 6466727 | 0.000000e+00 | 852.0 |
14 | TraesCS6A01G013500 | chr6D | 80.153 | 1174 | 179 | 20 | 508 | 1640 | 6496290 | 6497450 | 0.000000e+00 | 828.0 |
15 | TraesCS6A01G013500 | chr6D | 77.899 | 1371 | 235 | 34 | 506 | 1837 | 6425185 | 6426526 | 0.000000e+00 | 791.0 |
16 | TraesCS6A01G013500 | chr6D | 77.428 | 1174 | 196 | 37 | 506 | 1640 | 6441814 | 6442957 | 1.640000e-178 | 636.0 |
17 | TraesCS6A01G013500 | chr6D | 80.924 | 498 | 69 | 12 | 508 | 990 | 6351618 | 6352104 | 1.840000e-98 | 370.0 |
18 | TraesCS6A01G013500 | chr6D | 86.341 | 205 | 11 | 5 | 1 | 194 | 7031791 | 7031989 | 1.530000e-49 | 207.0 |
19 | TraesCS6A01G013500 | chr6B | 82.200 | 1118 | 189 | 10 | 2059 | 3171 | 11599607 | 11600719 | 0.000000e+00 | 953.0 |
20 | TraesCS6A01G013500 | chr6B | 78.543 | 741 | 114 | 22 | 508 | 1216 | 11592851 | 11593578 | 2.970000e-121 | 446.0 |
21 | TraesCS6A01G013500 | chr6B | 80.227 | 440 | 56 | 12 | 508 | 928 | 11792353 | 11792780 | 6.810000e-78 | 302.0 |
22 | TraesCS6A01G013500 | chr7D | 78.222 | 225 | 46 | 1 | 630 | 854 | 1091466 | 1091245 | 1.570000e-29 | 141.0 |
23 | TraesCS6A01G013500 | chr7D | 88.060 | 67 | 6 | 2 | 3858 | 3924 | 400942912 | 400942976 | 1.250000e-10 | 78.7 |
24 | TraesCS6A01G013500 | chrUn | 79.054 | 148 | 28 | 1 | 707 | 854 | 51405312 | 51405456 | 9.590000e-17 | 99.0 |
25 | TraesCS6A01G013500 | chr7A | 89.706 | 68 | 5 | 2 | 3860 | 3925 | 481567685 | 481567618 | 7.470000e-13 | 86.1 |
26 | TraesCS6A01G013500 | chr2B | 77.019 | 161 | 29 | 7 | 3860 | 4016 | 543479875 | 543479719 | 7.470000e-13 | 86.1 |
27 | TraesCS6A01G013500 | chr2A | 86.250 | 80 | 9 | 2 | 3859 | 3938 | 661958218 | 661958295 | 7.470000e-13 | 86.1 |
28 | TraesCS6A01G013500 | chr7B | 85.714 | 77 | 11 | 0 | 3864 | 3940 | 402798836 | 402798760 | 9.660000e-12 | 82.4 |
29 | TraesCS6A01G013500 | chr7B | 100.000 | 28 | 0 | 0 | 79 | 106 | 382612439 | 382612466 | 8.000000e-03 | 52.8 |
30 | TraesCS6A01G013500 | chr7B | 96.875 | 32 | 0 | 1 | 3676 | 3707 | 525832618 | 525832588 | 8.000000e-03 | 52.8 |
31 | TraesCS6A01G013500 | chr4D | 85.185 | 81 | 8 | 4 | 3861 | 3939 | 71806048 | 71805970 | 3.480000e-11 | 80.5 |
32 | TraesCS6A01G013500 | chr4D | 83.544 | 79 | 13 | 0 | 3860 | 3938 | 37089111 | 37089033 | 1.620000e-09 | 75.0 |
33 | TraesCS6A01G013500 | chr5A | 85.333 | 75 | 11 | 0 | 3861 | 3935 | 292865032 | 292865106 | 1.250000e-10 | 78.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G013500 | chr6A | 6698199 | 6702391 | 4192 | False | 7744.000000 | 7744 | 100.000000 | 1 | 4193 | 1 | chr6A.!!$F1 | 4192 |
1 | TraesCS6A01G013500 | chr6A | 5939552 | 5942434 | 2882 | False | 985.000000 | 1218 | 79.203000 | 506 | 3171 | 2 | chr6A.!!$F4 | 2665 |
2 | TraesCS6A01G013500 | chr6A | 5916502 | 5919469 | 2967 | False | 715.000000 | 1160 | 78.716500 | 506 | 3171 | 2 | chr6A.!!$F3 | 2665 |
3 | TraesCS6A01G013500 | chr6A | 5900723 | 5903509 | 2786 | False | 658.666667 | 1214 | 79.940667 | 508 | 3191 | 3 | chr6A.!!$F2 | 2683 |
4 | TraesCS6A01G013500 | chr6D | 7031791 | 7035765 | 3974 | False | 3147.000000 | 6087 | 91.044000 | 1 | 3999 | 2 | chr6D.!!$F7 | 3998 |
5 | TraesCS6A01G013500 | chr6D | 6371597 | 6373149 | 1552 | False | 1247.000000 | 1247 | 81.206000 | 1623 | 3178 | 1 | chr6D.!!$F1 | 1555 |
6 | TraesCS6A01G013500 | chr6D | 6496290 | 6499269 | 2979 | False | 997.000000 | 1166 | 80.256000 | 508 | 3171 | 2 | chr6D.!!$F6 | 2663 |
7 | TraesCS6A01G013500 | chr6D | 6425185 | 6428067 | 2882 | False | 985.000000 | 1179 | 79.226500 | 506 | 3171 | 2 | chr6D.!!$F5 | 2665 |
8 | TraesCS6A01G013500 | chr6D | 6465715 | 6466727 | 1012 | False | 852.000000 | 852 | 81.890000 | 2159 | 3171 | 1 | chr6D.!!$F3 | 1012 |
9 | TraesCS6A01G013500 | chr6D | 6351618 | 6354750 | 3132 | False | 790.000000 | 1210 | 80.851500 | 508 | 3180 | 2 | chr6D.!!$F4 | 2672 |
10 | TraesCS6A01G013500 | chr6D | 6441814 | 6442957 | 1143 | False | 636.000000 | 636 | 77.428000 | 506 | 1640 | 1 | chr6D.!!$F2 | 1134 |
11 | TraesCS6A01G013500 | chr6B | 11599607 | 11600719 | 1112 | False | 953.000000 | 953 | 82.200000 | 2059 | 3171 | 1 | chr6B.!!$F2 | 1112 |
12 | TraesCS6A01G013500 | chr6B | 11592851 | 11593578 | 727 | False | 446.000000 | 446 | 78.543000 | 508 | 1216 | 1 | chr6B.!!$F1 | 708 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
194 | 206 | 0.034059 | CGGCCTCCACAGATACATCC | 59.966 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 | F |
583 | 598 | 0.107703 | CGGCAACCTGGATCAGCTTA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 | F |
870 | 904 | 0.253894 | CTCTGTGTGGGCATGATGGA | 59.746 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 | F |
1557 | 1723 | 1.205417 | AGCAGCAACAATATGGTTGGC | 59.795 | 47.619 | 21.87 | 17.41 | 46.36 | 4.52 | F |
2987 | 3801 | 1.003118 | TGTGAATCAACCGAGAAGGGG | 59.997 | 52.381 | 0.00 | 0.00 | 46.96 | 4.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1297 | 1445 | 0.109342 | GGACCATGCAGGGAGGTATG | 59.891 | 60.000 | 26.87 | 0.0 | 43.89 | 2.39 | R |
1557 | 1723 | 1.404986 | CCCATTCTGTTTGGCAGCATG | 60.405 | 52.381 | 0.00 | 0.0 | 44.69 | 4.06 | R |
2156 | 2970 | 2.168496 | GGAGGAAAACCAAGTTAGGCC | 58.832 | 52.381 | 0.00 | 0.0 | 0.00 | 5.19 | R |
3160 | 3974 | 1.252904 | GCCTTGCCATTTCTCCTGCA | 61.253 | 55.000 | 0.00 | 0.0 | 0.00 | 4.41 | R |
4030 | 4860 | 0.027063 | AAAGCGTGTTTTCCGTCGTG | 59.973 | 50.000 | 0.00 | 0.0 | 0.00 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 7.821652 | TCGTAAATGATCACAATTTTTAGGCA | 58.178 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
48 | 49 | 9.294030 | GTAAATGATCACAATTTTTAGGCAGAG | 57.706 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
49 | 50 | 7.707624 | AATGATCACAATTTTTAGGCAGAGA | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 3.10 |
51 | 52 | 7.707624 | TGATCACAATTTTTAGGCAGAGATT | 57.292 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
53 | 54 | 6.182039 | TCACAATTTTTAGGCAGAGATTCG | 57.818 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
54 | 55 | 5.705441 | TCACAATTTTTAGGCAGAGATTCGT | 59.295 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
55 | 56 | 6.876789 | TCACAATTTTTAGGCAGAGATTCGTA | 59.123 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
56 | 57 | 7.389330 | TCACAATTTTTAGGCAGAGATTCGTAA | 59.611 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
57 | 58 | 8.020819 | CACAATTTTTAGGCAGAGATTCGTAAA | 58.979 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
58 | 59 | 8.739972 | ACAATTTTTAGGCAGAGATTCGTAAAT | 58.260 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
88 | 89 | 9.554395 | TTCTCATCTACACTGTTTGATTTTACA | 57.446 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
110 | 111 | 5.877012 | ACACAGAGATTCGTGCAAATCTTAT | 59.123 | 36.000 | 13.54 | 5.01 | 44.16 | 1.73 |
190 | 202 | 1.755380 | ACTAACGGCCTCCACAGATAC | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
191 | 203 | 1.754803 | CTAACGGCCTCCACAGATACA | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
192 | 204 | 1.204146 | AACGGCCTCCACAGATACAT | 58.796 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
193 | 205 | 0.753262 | ACGGCCTCCACAGATACATC | 59.247 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
194 | 206 | 0.034059 | CGGCCTCCACAGATACATCC | 59.966 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
195 | 207 | 1.131638 | GGCCTCCACAGATACATCCA | 58.868 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
196 | 208 | 1.701847 | GGCCTCCACAGATACATCCAT | 59.298 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
197 | 209 | 2.289945 | GGCCTCCACAGATACATCCATC | 60.290 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
198 | 210 | 2.636893 | GCCTCCACAGATACATCCATCT | 59.363 | 50.000 | 0.00 | 0.00 | 35.60 | 2.90 |
199 | 211 | 3.306641 | GCCTCCACAGATACATCCATCTC | 60.307 | 52.174 | 0.00 | 0.00 | 32.83 | 2.75 |
200 | 212 | 4.158786 | CCTCCACAGATACATCCATCTCT | 58.841 | 47.826 | 0.00 | 0.00 | 32.83 | 3.10 |
201 | 213 | 4.220382 | CCTCCACAGATACATCCATCTCTC | 59.780 | 50.000 | 0.00 | 0.00 | 32.83 | 3.20 |
202 | 214 | 4.808042 | TCCACAGATACATCCATCTCTCA | 58.192 | 43.478 | 0.00 | 0.00 | 32.83 | 3.27 |
203 | 215 | 5.400870 | TCCACAGATACATCCATCTCTCAT | 58.599 | 41.667 | 0.00 | 0.00 | 32.83 | 2.90 |
204 | 216 | 5.479724 | TCCACAGATACATCCATCTCTCATC | 59.520 | 44.000 | 0.00 | 0.00 | 32.83 | 2.92 |
205 | 217 | 5.481122 | CCACAGATACATCCATCTCTCATCT | 59.519 | 44.000 | 0.00 | 0.00 | 32.83 | 2.90 |
206 | 218 | 6.014413 | CCACAGATACATCCATCTCTCATCTT | 60.014 | 42.308 | 0.00 | 0.00 | 32.83 | 2.40 |
207 | 219 | 7.443477 | CACAGATACATCCATCTCTCATCTTT | 58.557 | 38.462 | 0.00 | 0.00 | 32.83 | 2.52 |
208 | 220 | 7.932491 | CACAGATACATCCATCTCTCATCTTTT | 59.068 | 37.037 | 0.00 | 0.00 | 32.83 | 2.27 |
209 | 221 | 8.492782 | ACAGATACATCCATCTCTCATCTTTTT | 58.507 | 33.333 | 0.00 | 0.00 | 32.83 | 1.94 |
280 | 292 | 0.469917 | CTTGACCGGCCCATATGACT | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
317 | 329 | 2.322081 | GCCGGCACACACACGTTAT | 61.322 | 57.895 | 24.80 | 0.00 | 0.00 | 1.89 |
318 | 330 | 1.015085 | GCCGGCACACACACGTTATA | 61.015 | 55.000 | 24.80 | 0.00 | 0.00 | 0.98 |
330 | 342 | 2.093181 | ACACGTTATAGCTGCCATGGAA | 60.093 | 45.455 | 18.40 | 3.09 | 0.00 | 3.53 |
454 | 466 | 6.182634 | CCGTTCGTAGCACAAACTAATAATG | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
485 | 497 | 3.306989 | CCAGTCTTTGTAGCATCTCACCA | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
583 | 598 | 0.107703 | CGGCAACCTGGATCAGCTTA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
870 | 904 | 0.253894 | CTCTGTGTGGGCATGATGGA | 59.746 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
991 | 1025 | 4.736126 | TCAAAGCTGGAATATCTCGACA | 57.264 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
1070 | 1218 | 8.723942 | AGGTTGATGTATCTTGACATTAGTTC | 57.276 | 34.615 | 0.00 | 0.00 | 40.18 | 3.01 |
1106 | 1254 | 1.978454 | ATAGCTGATTGGCCTCTTGC | 58.022 | 50.000 | 3.32 | 3.48 | 40.16 | 4.01 |
1131 | 1279 | 6.514870 | CGGTGAACATGATTCCTTCTTTGAAA | 60.515 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
1374 | 1522 | 4.671766 | CGCCAGCTAAACTTTTATCACCAC | 60.672 | 45.833 | 0.00 | 0.00 | 0.00 | 4.16 |
1389 | 1555 | 2.507886 | TCACCACTCTTTTGGAACTGGA | 59.492 | 45.455 | 0.00 | 0.00 | 39.24 | 3.86 |
1557 | 1723 | 1.205417 | AGCAGCAACAATATGGTTGGC | 59.795 | 47.619 | 21.87 | 17.41 | 46.36 | 4.52 |
1974 | 2788 | 6.260936 | AGAACTTAAGGCACATGGATTTATCG | 59.739 | 38.462 | 7.53 | 0.00 | 0.00 | 2.92 |
2156 | 2970 | 6.294880 | AGAACTTCCTCAGTGTTCTCACGG | 62.295 | 50.000 | 0.00 | 0.00 | 44.65 | 4.94 |
2356 | 3170 | 7.580688 | ACAACTTGTTGTATGGAGATATTCCGA | 60.581 | 37.037 | 16.35 | 0.00 | 40.16 | 4.55 |
2400 | 3214 | 6.006449 | ACACCTTCATCAATTGAGTTTAGCT | 58.994 | 36.000 | 14.54 | 0.00 | 35.27 | 3.32 |
2799 | 3613 | 3.374988 | CGGCAAGCTTATCTGAATTGACA | 59.625 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
2820 | 3634 | 7.001674 | TGACATTTTTAAGCTCCTTGGACTTA | 58.998 | 34.615 | 0.00 | 7.26 | 0.00 | 2.24 |
2987 | 3801 | 1.003118 | TGTGAATCAACCGAGAAGGGG | 59.997 | 52.381 | 0.00 | 0.00 | 46.96 | 4.79 |
2989 | 3803 | 1.078426 | AATCAACCGAGAAGGGGCG | 60.078 | 57.895 | 0.00 | 0.00 | 46.96 | 6.13 |
3016 | 3830 | 7.327032 | GTGTTTATGAGGCAAAGATGTTCTTTC | 59.673 | 37.037 | 0.00 | 0.00 | 42.60 | 2.62 |
3160 | 3974 | 4.337145 | TGTGTTTGTGGTTCTTACTTGGT | 58.663 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
3167 | 3981 | 2.224523 | TGGTTCTTACTTGGTGCAGGAG | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3199 | 4013 | 3.682858 | GGCAAGTACAAGTTGAGCGATAA | 59.317 | 43.478 | 10.54 | 0.00 | 30.18 | 1.75 |
3225 | 4039 | 4.256110 | TGACAATTAGATGGTGCTGTCAG | 58.744 | 43.478 | 0.00 | 0.00 | 38.52 | 3.51 |
3231 | 4045 | 2.682594 | AGATGGTGCTGTCAGCCTATA | 58.317 | 47.619 | 21.99 | 6.51 | 41.51 | 1.31 |
3239 | 4053 | 5.336055 | GGTGCTGTCAGCCTATAGTACATAG | 60.336 | 48.000 | 21.99 | 0.84 | 41.51 | 2.23 |
3250 | 4064 | 4.761591 | ATAGTACATAGTGGGCCCTAGT | 57.238 | 45.455 | 25.70 | 15.91 | 0.00 | 2.57 |
3267 | 4081 | 8.573885 | GGGCCCTAGTAATAAATGAATGTAAAC | 58.426 | 37.037 | 17.04 | 0.00 | 0.00 | 2.01 |
3608 | 4426 | 6.715347 | AATTCATATGCCAACTACCTTTCC | 57.285 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
3622 | 4440 | 4.236527 | ACCTTTCCAACTCTTCAACACT | 57.763 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
3637 | 4455 | 7.445121 | TCTTCAACACTTCAACAGATATGAGT | 58.555 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
3669 | 4487 | 8.994170 | ACAAAGAGATTAAAGTGCTTCTACTTC | 58.006 | 33.333 | 0.00 | 0.00 | 39.86 | 3.01 |
3681 | 4501 | 5.740099 | GTGCTTCTACTTCGTCATCTCTAAC | 59.260 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3695 | 4515 | 9.605955 | CGTCATCTCTAACAGATATAAGTGAAG | 57.394 | 37.037 | 0.00 | 0.00 | 40.20 | 3.02 |
3727 | 4551 | 9.844257 | AGAGTAATATAAAGCTTGCAATTCTCT | 57.156 | 29.630 | 0.00 | 10.50 | 0.00 | 3.10 |
3749 | 4573 | 3.462954 | TCCCATGCAATTCTCTCCCAATA | 59.537 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
3757 | 4581 | 6.891361 | TGCAATTCTCTCCCAATATCAAAAGA | 59.109 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
3759 | 4583 | 8.419442 | GCAATTCTCTCCCAATATCAAAAGATT | 58.581 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
3814 | 4639 | 5.516984 | AGAAGGAAATGATGCTCCAAGAAT | 58.483 | 37.500 | 0.00 | 0.00 | 33.83 | 2.40 |
3827 | 4652 | 8.978874 | ATGCTCCAAGAATTACACATATTACA | 57.021 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
3829 | 4654 | 7.011016 | TGCTCCAAGAATTACACATATTACACG | 59.989 | 37.037 | 0.00 | 0.00 | 0.00 | 4.49 |
3966 | 4796 | 2.382770 | ACAGTGTTGTGGCCTCCCA | 61.383 | 57.895 | 3.32 | 0.00 | 39.32 | 4.37 |
3977 | 4807 | 2.683465 | GCCTCCCATGGGCTCTTCA | 61.683 | 63.158 | 27.41 | 6.67 | 45.57 | 3.02 |
3979 | 4809 | 1.565390 | CCTCCCATGGGCTCTTCACA | 61.565 | 60.000 | 27.41 | 5.01 | 34.68 | 3.58 |
3982 | 4812 | 1.746615 | CCATGGGCTCTTCACACCG | 60.747 | 63.158 | 2.85 | 0.00 | 0.00 | 4.94 |
3995 | 4825 | 2.885644 | CACCGTTCGATCTGCCCG | 60.886 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
3999 | 4829 | 2.582498 | GTTCGATCTGCCCGGACG | 60.582 | 66.667 | 0.73 | 0.00 | 0.00 | 4.79 |
4000 | 4830 | 3.833645 | TTCGATCTGCCCGGACGG | 61.834 | 66.667 | 0.73 | 3.25 | 0.00 | 4.79 |
4022 | 4852 | 3.314331 | CACCCAGGCGTGTCTCCT | 61.314 | 66.667 | 5.57 | 0.00 | 0.00 | 3.69 |
4023 | 4853 | 2.997897 | ACCCAGGCGTGTCTCCTC | 60.998 | 66.667 | 5.57 | 0.00 | 0.00 | 3.71 |
4024 | 4854 | 4.135153 | CCCAGGCGTGTCTCCTCG | 62.135 | 72.222 | 5.57 | 0.00 | 0.00 | 4.63 |
4025 | 4855 | 4.135153 | CCAGGCGTGTCTCCTCGG | 62.135 | 72.222 | 5.57 | 0.00 | 0.00 | 4.63 |
4026 | 4856 | 4.135153 | CAGGCGTGTCTCCTCGGG | 62.135 | 72.222 | 0.00 | 0.00 | 0.00 | 5.14 |
4027 | 4857 | 4.361971 | AGGCGTGTCTCCTCGGGA | 62.362 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
4028 | 4858 | 3.148279 | GGCGTGTCTCCTCGGGAT | 61.148 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
4029 | 4859 | 2.722201 | GGCGTGTCTCCTCGGGATT | 61.722 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
4030 | 4860 | 1.227002 | GCGTGTCTCCTCGGGATTC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 2.52 |
4031 | 4861 | 1.945354 | GCGTGTCTCCTCGGGATTCA | 61.945 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4032 | 4862 | 0.179134 | CGTGTCTCCTCGGGATTCAC | 60.179 | 60.000 | 12.77 | 12.77 | 34.46 | 3.18 |
4033 | 4863 | 0.179134 | GTGTCTCCTCGGGATTCACG | 60.179 | 60.000 | 0.76 | 0.76 | 30.59 | 4.35 |
4034 | 4864 | 0.323087 | TGTCTCCTCGGGATTCACGA | 60.323 | 55.000 | 11.09 | 11.09 | 38.79 | 4.35 |
4035 | 4865 | 0.100861 | GTCTCCTCGGGATTCACGAC | 59.899 | 60.000 | 6.98 | 0.00 | 36.25 | 4.34 |
4036 | 4866 | 1.064296 | CTCCTCGGGATTCACGACG | 59.936 | 63.158 | 6.98 | 3.84 | 36.25 | 5.12 |
4037 | 4867 | 2.104331 | CCTCGGGATTCACGACGG | 59.896 | 66.667 | 6.98 | 9.39 | 36.25 | 4.79 |
4038 | 4868 | 2.412323 | CCTCGGGATTCACGACGGA | 61.412 | 63.158 | 16.91 | 0.00 | 36.25 | 4.69 |
4039 | 4869 | 1.509463 | CTCGGGATTCACGACGGAA | 59.491 | 57.895 | 6.98 | 0.25 | 36.25 | 4.30 |
4040 | 4870 | 0.108992 | CTCGGGATTCACGACGGAAA | 60.109 | 55.000 | 6.98 | 0.00 | 36.25 | 3.13 |
4041 | 4871 | 0.317799 | TCGGGATTCACGACGGAAAA | 59.682 | 50.000 | 6.98 | 0.00 | 35.12 | 2.29 |
4042 | 4872 | 0.441145 | CGGGATTCACGACGGAAAAC | 59.559 | 55.000 | 0.96 | 0.11 | 0.00 | 2.43 |
4043 | 4873 | 1.515081 | GGGATTCACGACGGAAAACA | 58.485 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4044 | 4874 | 1.196127 | GGGATTCACGACGGAAAACAC | 59.804 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
4045 | 4875 | 1.136446 | GGATTCACGACGGAAAACACG | 60.136 | 52.381 | 0.00 | 0.00 | 37.36 | 4.49 |
4046 | 4876 | 0.233848 | ATTCACGACGGAAAACACGC | 59.766 | 50.000 | 0.00 | 0.00 | 34.00 | 5.34 |
4047 | 4877 | 0.806884 | TTCACGACGGAAAACACGCT | 60.807 | 50.000 | 0.00 | 0.00 | 34.00 | 5.07 |
4048 | 4878 | 0.806884 | TCACGACGGAAAACACGCTT | 60.807 | 50.000 | 0.00 | 0.00 | 34.00 | 4.68 |
4049 | 4879 | 0.027063 | CACGACGGAAAACACGCTTT | 59.973 | 50.000 | 0.00 | 0.00 | 34.00 | 3.51 |
4050 | 4880 | 0.728542 | ACGACGGAAAACACGCTTTT | 59.271 | 45.000 | 0.00 | 0.00 | 34.00 | 2.27 |
4051 | 4881 | 1.932511 | ACGACGGAAAACACGCTTTTA | 59.067 | 42.857 | 0.00 | 0.00 | 34.00 | 1.52 |
4052 | 4882 | 2.351111 | ACGACGGAAAACACGCTTTTAA | 59.649 | 40.909 | 0.00 | 0.00 | 34.00 | 1.52 |
4053 | 4883 | 2.710460 | CGACGGAAAACACGCTTTTAAC | 59.290 | 45.455 | 0.00 | 0.00 | 34.00 | 2.01 |
4054 | 4884 | 3.682921 | GACGGAAAACACGCTTTTAACA | 58.317 | 40.909 | 0.00 | 0.00 | 34.00 | 2.41 |
4055 | 4885 | 3.687200 | ACGGAAAACACGCTTTTAACAG | 58.313 | 40.909 | 0.00 | 0.00 | 34.00 | 3.16 |
4056 | 4886 | 2.466205 | CGGAAAACACGCTTTTAACAGC | 59.534 | 45.455 | 3.41 | 3.41 | 36.33 | 4.40 |
4057 | 4887 | 2.792674 | GGAAAACACGCTTTTAACAGCC | 59.207 | 45.455 | 8.00 | 0.00 | 36.31 | 4.85 |
4058 | 4888 | 2.502213 | AAACACGCTTTTAACAGCCC | 57.498 | 45.000 | 8.00 | 0.00 | 36.31 | 5.19 |
4059 | 4889 | 1.394618 | AACACGCTTTTAACAGCCCA | 58.605 | 45.000 | 8.00 | 0.00 | 36.31 | 5.36 |
4060 | 4890 | 1.616159 | ACACGCTTTTAACAGCCCAT | 58.384 | 45.000 | 8.00 | 0.00 | 36.31 | 4.00 |
4061 | 4891 | 2.785562 | ACACGCTTTTAACAGCCCATA | 58.214 | 42.857 | 8.00 | 0.00 | 36.31 | 2.74 |
4062 | 4892 | 2.747446 | ACACGCTTTTAACAGCCCATAG | 59.253 | 45.455 | 8.00 | 0.00 | 36.31 | 2.23 |
4063 | 4893 | 1.743394 | ACGCTTTTAACAGCCCATAGC | 59.257 | 47.619 | 8.00 | 0.00 | 44.25 | 2.97 |
4078 | 4908 | 6.597832 | GCCCATAGCTCTAATTCTCTAGAA | 57.402 | 41.667 | 0.00 | 0.00 | 38.99 | 2.10 |
4079 | 4909 | 6.998802 | GCCCATAGCTCTAATTCTCTAGAAA | 58.001 | 40.000 | 0.00 | 0.00 | 36.63 | 2.52 |
4080 | 4910 | 7.096551 | GCCCATAGCTCTAATTCTCTAGAAAG | 58.903 | 42.308 | 0.00 | 0.00 | 36.63 | 2.62 |
4081 | 4911 | 7.096551 | CCCATAGCTCTAATTCTCTAGAAAGC | 58.903 | 42.308 | 0.00 | 6.16 | 37.61 | 3.51 |
4082 | 4912 | 7.039082 | CCCATAGCTCTAATTCTCTAGAAAGCT | 60.039 | 40.741 | 16.65 | 16.65 | 37.61 | 3.74 |
4083 | 4913 | 7.814107 | CCATAGCTCTAATTCTCTAGAAAGCTG | 59.186 | 40.741 | 19.69 | 9.85 | 37.61 | 4.24 |
4084 | 4914 | 6.790232 | AGCTCTAATTCTCTAGAAAGCTGT | 57.210 | 37.500 | 13.29 | 0.00 | 37.61 | 4.40 |
4085 | 4915 | 6.805713 | AGCTCTAATTCTCTAGAAAGCTGTC | 58.194 | 40.000 | 13.29 | 0.00 | 37.61 | 3.51 |
4086 | 4916 | 5.983118 | GCTCTAATTCTCTAGAAAGCTGTCC | 59.017 | 44.000 | 0.00 | 0.00 | 37.61 | 4.02 |
4087 | 4917 | 6.137794 | TCTAATTCTCTAGAAAGCTGTCCG | 57.862 | 41.667 | 0.00 | 0.00 | 37.61 | 4.79 |
4088 | 4918 | 4.810191 | AATTCTCTAGAAAGCTGTCCGT | 57.190 | 40.909 | 0.00 | 0.00 | 37.61 | 4.69 |
4089 | 4919 | 3.577649 | TTCTCTAGAAAGCTGTCCGTG | 57.422 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
4090 | 4920 | 2.791655 | TCTCTAGAAAGCTGTCCGTGA | 58.208 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
4091 | 4921 | 2.750166 | TCTCTAGAAAGCTGTCCGTGAG | 59.250 | 50.000 | 0.00 | 6.21 | 0.00 | 3.51 |
4092 | 4922 | 2.490115 | CTCTAGAAAGCTGTCCGTGAGT | 59.510 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4093 | 4923 | 2.229062 | TCTAGAAAGCTGTCCGTGAGTG | 59.771 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4094 | 4924 | 0.753262 | AGAAAGCTGTCCGTGAGTGT | 59.247 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4095 | 4925 | 1.961394 | AGAAAGCTGTCCGTGAGTGTA | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
4096 | 4926 | 2.029828 | AGAAAGCTGTCCGTGAGTGTAG | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4097 | 4927 | 0.038159 | AAGCTGTCCGTGAGTGTAGC | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4098 | 4928 | 1.179174 | AGCTGTCCGTGAGTGTAGCA | 61.179 | 55.000 | 0.00 | 0.00 | 33.81 | 3.49 |
4099 | 4929 | 0.108615 | GCTGTCCGTGAGTGTAGCAT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
4100 | 4930 | 1.673033 | GCTGTCCGTGAGTGTAGCATT | 60.673 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
4101 | 4931 | 1.995484 | CTGTCCGTGAGTGTAGCATTG | 59.005 | 52.381 | 0.00 | 0.00 | 0.00 | 2.82 |
4102 | 4932 | 1.343142 | TGTCCGTGAGTGTAGCATTGT | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
4103 | 4933 | 2.224185 | TGTCCGTGAGTGTAGCATTGTT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
4104 | 4934 | 2.157668 | GTCCGTGAGTGTAGCATTGTTG | 59.842 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4105 | 4935 | 2.143122 | CCGTGAGTGTAGCATTGTTGT | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
4106 | 4936 | 2.548057 | CCGTGAGTGTAGCATTGTTGTT | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
4107 | 4937 | 3.003275 | CCGTGAGTGTAGCATTGTTGTTT | 59.997 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4108 | 4938 | 4.497340 | CCGTGAGTGTAGCATTGTTGTTTT | 60.497 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
4109 | 4939 | 4.670621 | CGTGAGTGTAGCATTGTTGTTTTC | 59.329 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
4110 | 4940 | 4.670621 | GTGAGTGTAGCATTGTTGTTTTCG | 59.329 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4111 | 4941 | 3.628017 | AGTGTAGCATTGTTGTTTTCGC | 58.372 | 40.909 | 0.00 | 0.00 | 0.00 | 4.70 |
4112 | 4942 | 3.315191 | AGTGTAGCATTGTTGTTTTCGCT | 59.685 | 39.130 | 0.00 | 0.00 | 0.00 | 4.93 |
4113 | 4943 | 4.041723 | GTGTAGCATTGTTGTTTTCGCTT | 58.958 | 39.130 | 0.00 | 0.00 | 0.00 | 4.68 |
4114 | 4944 | 4.502645 | GTGTAGCATTGTTGTTTTCGCTTT | 59.497 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
4115 | 4945 | 5.005299 | GTGTAGCATTGTTGTTTTCGCTTTT | 59.995 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
4116 | 4946 | 4.777140 | AGCATTGTTGTTTTCGCTTTTC | 57.223 | 36.364 | 0.00 | 0.00 | 0.00 | 2.29 |
4117 | 4947 | 3.555547 | AGCATTGTTGTTTTCGCTTTTCC | 59.444 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
4118 | 4948 | 3.303066 | GCATTGTTGTTTTCGCTTTTCCC | 60.303 | 43.478 | 0.00 | 0.00 | 0.00 | 3.97 |
4119 | 4949 | 2.196295 | TGTTGTTTTCGCTTTTCCCG | 57.804 | 45.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4120 | 4950 | 1.202313 | TGTTGTTTTCGCTTTTCCCGG | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 5.73 |
4121 | 4951 | 1.104630 | TTGTTTTCGCTTTTCCCGGT | 58.895 | 45.000 | 0.00 | 0.00 | 0.00 | 5.28 |
4122 | 4952 | 0.664224 | TGTTTTCGCTTTTCCCGGTC | 59.336 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4123 | 4953 | 0.949397 | GTTTTCGCTTTTCCCGGTCT | 59.051 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4124 | 4954 | 0.948678 | TTTTCGCTTTTCCCGGTCTG | 59.051 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4125 | 4955 | 0.887387 | TTTCGCTTTTCCCGGTCTGG | 60.887 | 55.000 | 0.00 | 0.00 | 37.55 | 3.86 |
4126 | 4956 | 2.032071 | CGCTTTTCCCGGTCTGGT | 59.968 | 61.111 | 0.00 | 0.00 | 35.15 | 4.00 |
4127 | 4957 | 2.325082 | CGCTTTTCCCGGTCTGGTG | 61.325 | 63.158 | 0.00 | 0.00 | 35.15 | 4.17 |
4128 | 4958 | 2.626780 | GCTTTTCCCGGTCTGGTGC | 61.627 | 63.158 | 0.00 | 0.00 | 35.15 | 5.01 |
4129 | 4959 | 1.228124 | CTTTTCCCGGTCTGGTGCA | 60.228 | 57.895 | 0.00 | 0.00 | 35.15 | 4.57 |
4130 | 4960 | 0.609131 | CTTTTCCCGGTCTGGTGCAT | 60.609 | 55.000 | 0.00 | 0.00 | 35.15 | 3.96 |
4131 | 4961 | 0.893270 | TTTTCCCGGTCTGGTGCATG | 60.893 | 55.000 | 0.00 | 0.00 | 35.15 | 4.06 |
4132 | 4962 | 2.762969 | TTTCCCGGTCTGGTGCATGG | 62.763 | 60.000 | 0.00 | 0.00 | 35.15 | 3.66 |
4133 | 4963 | 4.033776 | CCCGGTCTGGTGCATGGT | 62.034 | 66.667 | 0.00 | 0.00 | 35.15 | 3.55 |
4134 | 4964 | 2.747460 | CCGGTCTGGTGCATGGTG | 60.747 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
4135 | 4965 | 2.032528 | CGGTCTGGTGCATGGTGT | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
4136 | 4966 | 2.327343 | CGGTCTGGTGCATGGTGTG | 61.327 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
4137 | 4967 | 1.228245 | GGTCTGGTGCATGGTGTGT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
4138 | 4968 | 1.518056 | GGTCTGGTGCATGGTGTGTG | 61.518 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
4139 | 4969 | 1.898094 | TCTGGTGCATGGTGTGTGC | 60.898 | 57.895 | 0.00 | 0.00 | 42.81 | 4.57 |
4140 | 4970 | 2.911509 | TGGTGCATGGTGTGTGCC | 60.912 | 61.111 | 0.00 | 0.00 | 41.83 | 5.01 |
4141 | 4971 | 2.598394 | GGTGCATGGTGTGTGCCT | 60.598 | 61.111 | 0.00 | 0.00 | 41.83 | 4.75 |
4142 | 4972 | 2.646719 | GTGCATGGTGTGTGCCTG | 59.353 | 61.111 | 0.00 | 0.00 | 41.83 | 4.85 |
4143 | 4973 | 2.598099 | TGCATGGTGTGTGCCTGG | 60.598 | 61.111 | 0.00 | 0.00 | 41.83 | 4.45 |
4144 | 4974 | 4.060038 | GCATGGTGTGTGCCTGGC | 62.060 | 66.667 | 12.87 | 12.87 | 36.61 | 4.85 |
4145 | 4975 | 2.282674 | CATGGTGTGTGCCTGGCT | 60.283 | 61.111 | 21.03 | 0.00 | 0.00 | 4.75 |
4146 | 4976 | 1.904865 | CATGGTGTGTGCCTGGCTT | 60.905 | 57.895 | 21.03 | 0.00 | 0.00 | 4.35 |
4147 | 4977 | 1.904865 | ATGGTGTGTGCCTGGCTTG | 60.905 | 57.895 | 21.03 | 0.00 | 0.00 | 4.01 |
4148 | 4978 | 3.297620 | GGTGTGTGCCTGGCTTGG | 61.298 | 66.667 | 21.03 | 0.00 | 0.00 | 3.61 |
4156 | 4986 | 3.458163 | CCTGGCTTGGCTGGCATG | 61.458 | 66.667 | 4.22 | 8.83 | 41.63 | 4.06 |
4157 | 4987 | 3.458163 | CTGGCTTGGCTGGCATGG | 61.458 | 66.667 | 16.87 | 9.20 | 41.63 | 3.66 |
4159 | 4989 | 4.764771 | GGCTTGGCTGGCATGGGA | 62.765 | 66.667 | 16.87 | 0.00 | 0.00 | 4.37 |
4160 | 4990 | 2.443390 | GCTTGGCTGGCATGGGAT | 60.443 | 61.111 | 16.87 | 0.00 | 0.00 | 3.85 |
4161 | 4991 | 2.792947 | GCTTGGCTGGCATGGGATG | 61.793 | 63.158 | 16.87 | 0.00 | 0.00 | 3.51 |
4162 | 4992 | 2.042741 | TTGGCTGGCATGGGATGG | 60.043 | 61.111 | 4.22 | 0.00 | 0.00 | 3.51 |
4163 | 4993 | 2.577020 | CTTGGCTGGCATGGGATGGA | 62.577 | 60.000 | 4.22 | 0.00 | 0.00 | 3.41 |
4164 | 4994 | 2.165643 | TTGGCTGGCATGGGATGGAA | 62.166 | 55.000 | 4.22 | 0.00 | 0.00 | 3.53 |
4165 | 4995 | 2.129785 | GGCTGGCATGGGATGGAAC | 61.130 | 63.158 | 0.00 | 0.00 | 0.00 | 3.62 |
4179 | 5009 | 2.529780 | TGGAACATGTAACGTCGGTT | 57.470 | 45.000 | 0.00 | 0.00 | 40.20 | 4.44 |
4180 | 5010 | 2.136728 | TGGAACATGTAACGTCGGTTG | 58.863 | 47.619 | 0.00 | 0.00 | 36.90 | 3.77 |
4181 | 5011 | 1.461897 | GGAACATGTAACGTCGGTTGG | 59.538 | 52.381 | 0.00 | 0.00 | 36.90 | 3.77 |
4182 | 5012 | 2.137523 | GAACATGTAACGTCGGTTGGT | 58.862 | 47.619 | 0.00 | 0.00 | 36.90 | 3.67 |
4183 | 5013 | 3.316283 | GAACATGTAACGTCGGTTGGTA | 58.684 | 45.455 | 0.00 | 0.00 | 36.90 | 3.25 |
4184 | 5014 | 3.598019 | ACATGTAACGTCGGTTGGTAT | 57.402 | 42.857 | 0.00 | 0.00 | 36.90 | 2.73 |
4185 | 5015 | 3.255725 | ACATGTAACGTCGGTTGGTATG | 58.744 | 45.455 | 0.00 | 0.00 | 36.90 | 2.39 |
4186 | 5016 | 2.367030 | TGTAACGTCGGTTGGTATGG | 57.633 | 50.000 | 0.00 | 0.00 | 36.90 | 2.74 |
4187 | 5017 | 1.067000 | TGTAACGTCGGTTGGTATGGG | 60.067 | 52.381 | 0.00 | 0.00 | 36.90 | 4.00 |
4188 | 5018 | 0.108233 | TAACGTCGGTTGGTATGGGC | 60.108 | 55.000 | 0.00 | 0.00 | 36.90 | 5.36 |
4189 | 5019 | 1.833787 | AACGTCGGTTGGTATGGGCT | 61.834 | 55.000 | 0.00 | 0.00 | 34.37 | 5.19 |
4190 | 5020 | 1.520787 | CGTCGGTTGGTATGGGCTC | 60.521 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
4191 | 5021 | 1.520787 | GTCGGTTGGTATGGGCTCG | 60.521 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
4192 | 5022 | 1.985662 | TCGGTTGGTATGGGCTCGT | 60.986 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 9.241919 | TCTCTGCCTAAAAATTGTGATCATTTA | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
33 | 34 | 9.573133 | AATTTACGAATCTCTGCCTAAAAATTG | 57.427 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
41 | 42 | 7.987458 | TGAGAATTAATTTACGAATCTCTGCCT | 59.013 | 33.333 | 1.43 | 0.00 | 0.00 | 4.75 |
42 | 43 | 8.142994 | TGAGAATTAATTTACGAATCTCTGCC | 57.857 | 34.615 | 1.43 | 0.00 | 0.00 | 4.85 |
75 | 76 | 7.351981 | CACGAATCTCTGTGTAAAATCAAACA | 58.648 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
76 | 77 | 6.303259 | GCACGAATCTCTGTGTAAAATCAAAC | 59.697 | 38.462 | 0.00 | 0.00 | 38.36 | 2.93 |
88 | 89 | 5.220739 | GCATAAGATTTGCACGAATCTCTGT | 60.221 | 40.000 | 12.85 | 2.55 | 43.66 | 3.41 |
110 | 111 | 4.499019 | GGAACTTTTCCTTGTGAATTCGCA | 60.499 | 41.667 | 17.57 | 17.57 | 46.57 | 5.10 |
211 | 223 | 5.078949 | TGAGAGATGGATTTGCCTCAAAAA | 58.921 | 37.500 | 0.00 | 0.00 | 36.90 | 1.94 |
212 | 224 | 4.665451 | TGAGAGATGGATTTGCCTCAAAA | 58.335 | 39.130 | 0.00 | 0.00 | 36.90 | 2.44 |
213 | 225 | 4.305539 | TGAGAGATGGATTTGCCTCAAA | 57.694 | 40.909 | 0.00 | 0.00 | 37.75 | 2.69 |
214 | 226 | 4.165565 | AGATGAGAGATGGATTTGCCTCAA | 59.834 | 41.667 | 0.00 | 0.00 | 37.63 | 3.02 |
215 | 227 | 3.715315 | AGATGAGAGATGGATTTGCCTCA | 59.285 | 43.478 | 0.00 | 0.00 | 37.63 | 3.86 |
216 | 228 | 4.354893 | AGATGAGAGATGGATTTGCCTC | 57.645 | 45.455 | 0.00 | 0.00 | 37.63 | 4.70 |
217 | 229 | 5.901413 | TTAGATGAGAGATGGATTTGCCT | 57.099 | 39.130 | 0.00 | 0.00 | 37.63 | 4.75 |
218 | 230 | 6.060788 | ACTTTAGATGAGAGATGGATTTGCC | 58.939 | 40.000 | 0.00 | 0.00 | 37.10 | 4.52 |
219 | 231 | 6.765036 | TGACTTTAGATGAGAGATGGATTTGC | 59.235 | 38.462 | 0.00 | 0.00 | 0.00 | 3.68 |
220 | 232 | 7.042858 | CGTGACTTTAGATGAGAGATGGATTTG | 60.043 | 40.741 | 0.00 | 0.00 | 0.00 | 2.32 |
221 | 233 | 6.983307 | CGTGACTTTAGATGAGAGATGGATTT | 59.017 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
222 | 234 | 6.462207 | CCGTGACTTTAGATGAGAGATGGATT | 60.462 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
223 | 235 | 5.010516 | CCGTGACTTTAGATGAGAGATGGAT | 59.989 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
224 | 236 | 4.339530 | CCGTGACTTTAGATGAGAGATGGA | 59.660 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
225 | 237 | 4.615949 | CCGTGACTTTAGATGAGAGATGG | 58.384 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
280 | 292 | 1.003839 | ACGTACGTACCTCGACCCA | 60.004 | 57.895 | 21.41 | 0.00 | 42.86 | 4.51 |
284 | 296 | 3.177600 | GGCACGTACGTACCTCGA | 58.822 | 61.111 | 26.98 | 0.00 | 42.86 | 4.04 |
317 | 329 | 0.739462 | CGTTCGTTCCATGGCAGCTA | 60.739 | 55.000 | 6.96 | 0.00 | 0.00 | 3.32 |
318 | 330 | 2.034879 | CGTTCGTTCCATGGCAGCT | 61.035 | 57.895 | 6.96 | 0.00 | 0.00 | 4.24 |
330 | 342 | 1.741145 | GTTGGGATTTATGCCGTTCGT | 59.259 | 47.619 | 0.00 | 0.00 | 41.80 | 3.85 |
475 | 487 | 1.065926 | TGACAGATGGTGGTGAGATGC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
485 | 497 | 1.114627 | TGCTAGCGATGACAGATGGT | 58.885 | 50.000 | 10.77 | 0.00 | 0.00 | 3.55 |
583 | 598 | 4.515404 | GCGTAGGCGACAAGGAAT | 57.485 | 55.556 | 0.00 | 0.00 | 41.33 | 3.01 |
652 | 667 | 2.095059 | GTCGTTGATGCCTTGCTTGAAT | 60.095 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
844 | 865 | 1.351076 | TGCCCACACAGAGATTGAGA | 58.649 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
870 | 904 | 2.904434 | ACCCAAGAACTCTGGAATACGT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 3.57 |
1106 | 1254 | 4.455533 | TCAAAGAAGGAATCATGTTCACCG | 59.544 | 41.667 | 9.31 | 0.00 | 0.00 | 4.94 |
1131 | 1279 | 1.550976 | CAGTAAGAAAGGCGGAGGTCT | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1297 | 1445 | 0.109342 | GGACCATGCAGGGAGGTATG | 59.891 | 60.000 | 26.87 | 0.00 | 43.89 | 2.39 |
1374 | 1522 | 4.734695 | GCTGTGTTTCCAGTTCCAAAAGAG | 60.735 | 45.833 | 0.00 | 0.00 | 34.84 | 2.85 |
1389 | 1555 | 2.378038 | ACTGTCATTGTGGCTGTGTTT | 58.622 | 42.857 | 0.00 | 0.00 | 32.89 | 2.83 |
1557 | 1723 | 1.404986 | CCCATTCTGTTTGGCAGCATG | 60.405 | 52.381 | 0.00 | 0.00 | 44.69 | 4.06 |
1974 | 2788 | 5.679601 | AGAGGTCCTGAGAAAGAATTATGC | 58.320 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
2156 | 2970 | 2.168496 | GGAGGAAAACCAAGTTAGGCC | 58.832 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
2356 | 3170 | 5.882557 | GGTGTTGAAGATTGGTGATAGTCAT | 59.117 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2518 | 3332 | 5.649782 | ACATGCCAAACTCCTCTAAATTG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2706 | 3520 | 2.620251 | TCATAGCCCCAATCTTCGTG | 57.380 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2799 | 3613 | 8.829373 | ATGATAAGTCCAAGGAGCTTAAAAAT | 57.171 | 30.769 | 12.11 | 6.64 | 0.00 | 1.82 |
2987 | 3801 | 1.810151 | TCTTTGCCTCATAAACACCGC | 59.190 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
2989 | 3803 | 5.183904 | AGAACATCTTTGCCTCATAAACACC | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3016 | 3830 | 2.224867 | ACCCAGATCCAAGTCCAAAGTG | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3160 | 3974 | 1.252904 | GCCTTGCCATTTCTCCTGCA | 61.253 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3167 | 3981 | 3.005791 | ACTTGTACTTGCCTTGCCATTTC | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
3199 | 4013 | 5.503927 | ACAGCACCATCTAATTGTCATCTT | 58.496 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
3225 | 4039 | 2.500504 | GGGCCCACTATGTACTATAGGC | 59.499 | 54.545 | 19.95 | 9.31 | 38.45 | 3.93 |
3231 | 4045 | 4.547886 | TTACTAGGGCCCACTATGTACT | 57.452 | 45.455 | 27.56 | 1.16 | 0.00 | 2.73 |
3239 | 4053 | 6.068670 | ACATTCATTTATTACTAGGGCCCAC | 58.931 | 40.000 | 27.56 | 0.00 | 0.00 | 4.61 |
3350 | 4164 | 8.740906 | TGTTGACTTTTGATTTAGTACAAACCA | 58.259 | 29.630 | 0.00 | 0.00 | 36.06 | 3.67 |
3392 | 4206 | 5.664908 | ACTCACCAAGGATACATTCTCATCT | 59.335 | 40.000 | 0.00 | 0.00 | 41.41 | 2.90 |
3393 | 4207 | 5.757320 | CACTCACCAAGGATACATTCTCATC | 59.243 | 44.000 | 0.00 | 0.00 | 41.41 | 2.92 |
3394 | 4208 | 5.397221 | CCACTCACCAAGGATACATTCTCAT | 60.397 | 44.000 | 0.00 | 0.00 | 41.41 | 2.90 |
3395 | 4209 | 4.080919 | CCACTCACCAAGGATACATTCTCA | 60.081 | 45.833 | 0.00 | 0.00 | 41.41 | 3.27 |
3396 | 4210 | 4.162320 | TCCACTCACCAAGGATACATTCTC | 59.838 | 45.833 | 0.00 | 0.00 | 41.41 | 2.87 |
3397 | 4211 | 4.104086 | TCCACTCACCAAGGATACATTCT | 58.896 | 43.478 | 0.00 | 0.00 | 41.41 | 2.40 |
3398 | 4212 | 4.446371 | CTCCACTCACCAAGGATACATTC | 58.554 | 47.826 | 0.00 | 0.00 | 41.41 | 2.67 |
3399 | 4213 | 3.370953 | GCTCCACTCACCAAGGATACATT | 60.371 | 47.826 | 0.00 | 0.00 | 41.41 | 2.71 |
3400 | 4214 | 2.171448 | GCTCCACTCACCAAGGATACAT | 59.829 | 50.000 | 0.00 | 0.00 | 41.41 | 2.29 |
3401 | 4215 | 1.555075 | GCTCCACTCACCAAGGATACA | 59.445 | 52.381 | 0.00 | 0.00 | 41.41 | 2.29 |
3402 | 4216 | 1.555075 | TGCTCCACTCACCAAGGATAC | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
3410 | 4224 | 1.555075 | TGATAGGTTGCTCCACTCACC | 59.445 | 52.381 | 1.79 | 0.00 | 39.02 | 4.02 |
3437 | 4251 | 9.504708 | TTGGCAATTGATTTTAGACAATTTGAT | 57.495 | 25.926 | 10.34 | 0.00 | 42.35 | 2.57 |
3583 | 4401 | 7.836685 | TGGAAAGGTAGTTGGCATATGAATTAA | 59.163 | 33.333 | 6.97 | 0.00 | 0.00 | 1.40 |
3608 | 4426 | 5.801350 | TCTGTTGAAGTGTTGAAGAGTTG | 57.199 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3622 | 4440 | 8.675705 | TTTGTTCTTCACTCATATCTGTTGAA | 57.324 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
3637 | 4455 | 7.807977 | AGCACTTTAATCTCTTTGTTCTTCA | 57.192 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3669 | 4487 | 9.605955 | CTTCACTTATATCTGTTAGAGATGACG | 57.394 | 37.037 | 1.87 | 0.00 | 41.86 | 4.35 |
3714 | 4538 | 1.202382 | GCATGGGAGAGAATTGCAAGC | 60.202 | 52.381 | 4.94 | 0.00 | 33.58 | 4.01 |
3718 | 4542 | 3.383825 | AGAATTGCATGGGAGAGAATTGC | 59.616 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
3719 | 4543 | 4.888239 | AGAGAATTGCATGGGAGAGAATTG | 59.112 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3721 | 4545 | 4.446023 | GGAGAGAATTGCATGGGAGAGAAT | 60.446 | 45.833 | 0.00 | 0.00 | 0.00 | 2.40 |
3722 | 4546 | 3.118112 | GGAGAGAATTGCATGGGAGAGAA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
3723 | 4547 | 2.437281 | GGAGAGAATTGCATGGGAGAGA | 59.563 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3724 | 4548 | 2.486907 | GGGAGAGAATTGCATGGGAGAG | 60.487 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
3725 | 4549 | 1.492176 | GGGAGAGAATTGCATGGGAGA | 59.508 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
3726 | 4550 | 1.213678 | TGGGAGAGAATTGCATGGGAG | 59.786 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3727 | 4551 | 1.297968 | TGGGAGAGAATTGCATGGGA | 58.702 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3728 | 4552 | 2.148446 | TTGGGAGAGAATTGCATGGG | 57.852 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3783 | 4607 | 8.274322 | TGGAGCATCATTTCCTTCTTCTATTTA | 58.726 | 33.333 | 0.00 | 0.00 | 36.25 | 1.40 |
3787 | 4611 | 5.698741 | TGGAGCATCATTTCCTTCTTCTA | 57.301 | 39.130 | 0.00 | 0.00 | 36.25 | 2.10 |
3789 | 4613 | 4.946157 | TCTTGGAGCATCATTTCCTTCTTC | 59.054 | 41.667 | 0.00 | 0.00 | 36.25 | 2.87 |
3792 | 4617 | 5.848833 | ATTCTTGGAGCATCATTTCCTTC | 57.151 | 39.130 | 0.00 | 0.00 | 36.25 | 3.46 |
3795 | 4620 | 6.127647 | TGTGTAATTCTTGGAGCATCATTTCC | 60.128 | 38.462 | 0.00 | 0.00 | 36.25 | 3.13 |
3951 | 4781 | 1.978617 | CCATGGGAGGCCACAACAC | 60.979 | 63.158 | 5.01 | 0.00 | 0.00 | 3.32 |
3954 | 4784 | 4.380945 | GCCCATGGGAGGCCACAA | 62.381 | 66.667 | 36.00 | 0.00 | 45.16 | 3.33 |
3966 | 4796 | 0.321653 | GAACGGTGTGAAGAGCCCAT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3975 | 4805 | 1.080093 | GGCAGATCGAACGGTGTGA | 60.080 | 57.895 | 8.70 | 0.00 | 0.00 | 3.58 |
3977 | 4807 | 2.264794 | GGGCAGATCGAACGGTGT | 59.735 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
3979 | 4809 | 4.143333 | CCGGGCAGATCGAACGGT | 62.143 | 66.667 | 11.36 | 0.00 | 39.70 | 4.83 |
3982 | 4812 | 2.582498 | CGTCCGGGCAGATCGAAC | 60.582 | 66.667 | 6.96 | 0.00 | 0.00 | 3.95 |
4005 | 4835 | 3.302347 | GAGGAGACACGCCTGGGTG | 62.302 | 68.421 | 12.21 | 12.21 | 43.54 | 4.61 |
4006 | 4836 | 2.997897 | GAGGAGACACGCCTGGGT | 60.998 | 66.667 | 0.00 | 0.00 | 32.83 | 4.51 |
4007 | 4837 | 4.135153 | CGAGGAGACACGCCTGGG | 62.135 | 72.222 | 0.00 | 0.00 | 37.67 | 4.45 |
4008 | 4838 | 4.135153 | CCGAGGAGACACGCCTGG | 62.135 | 72.222 | 0.00 | 0.00 | 43.43 | 4.45 |
4009 | 4839 | 4.135153 | CCCGAGGAGACACGCCTG | 62.135 | 72.222 | 0.00 | 0.00 | 43.43 | 4.85 |
4010 | 4840 | 3.663815 | ATCCCGAGGAGACACGCCT | 62.664 | 63.158 | 0.00 | 0.00 | 43.43 | 5.52 |
4011 | 4841 | 2.630592 | GAATCCCGAGGAGACACGCC | 62.631 | 65.000 | 0.00 | 0.00 | 43.43 | 5.68 |
4012 | 4842 | 1.227002 | GAATCCCGAGGAGACACGC | 60.227 | 63.158 | 0.00 | 0.00 | 43.43 | 5.34 |
4013 | 4843 | 0.179134 | GTGAATCCCGAGGAGACACG | 60.179 | 60.000 | 12.50 | 0.00 | 44.43 | 4.49 |
4014 | 4844 | 0.179134 | CGTGAATCCCGAGGAGACAC | 60.179 | 60.000 | 15.35 | 15.35 | 37.87 | 3.67 |
4015 | 4845 | 0.323087 | TCGTGAATCCCGAGGAGACA | 60.323 | 55.000 | 0.00 | 0.00 | 34.05 | 3.41 |
4016 | 4846 | 0.100861 | GTCGTGAATCCCGAGGAGAC | 59.899 | 60.000 | 0.00 | 0.00 | 34.05 | 3.36 |
4017 | 4847 | 1.374343 | CGTCGTGAATCCCGAGGAGA | 61.374 | 60.000 | 1.83 | 0.00 | 41.33 | 3.71 |
4018 | 4848 | 1.064296 | CGTCGTGAATCCCGAGGAG | 59.936 | 63.158 | 1.83 | 0.00 | 41.33 | 3.69 |
4019 | 4849 | 2.412323 | CCGTCGTGAATCCCGAGGA | 61.412 | 63.158 | 9.20 | 0.00 | 41.33 | 3.71 |
4020 | 4850 | 1.940883 | TTCCGTCGTGAATCCCGAGG | 61.941 | 60.000 | 1.07 | 1.07 | 39.26 | 4.63 |
4021 | 4851 | 0.108992 | TTTCCGTCGTGAATCCCGAG | 60.109 | 55.000 | 0.00 | 0.00 | 34.56 | 4.63 |
4022 | 4852 | 0.317799 | TTTTCCGTCGTGAATCCCGA | 59.682 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4023 | 4853 | 0.441145 | GTTTTCCGTCGTGAATCCCG | 59.559 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4024 | 4854 | 1.196127 | GTGTTTTCCGTCGTGAATCCC | 59.804 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
4025 | 4855 | 1.136446 | CGTGTTTTCCGTCGTGAATCC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4026 | 4856 | 1.720547 | GCGTGTTTTCCGTCGTGAATC | 60.721 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
4027 | 4857 | 0.233848 | GCGTGTTTTCCGTCGTGAAT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4028 | 4858 | 0.806884 | AGCGTGTTTTCCGTCGTGAA | 60.807 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4029 | 4859 | 0.806884 | AAGCGTGTTTTCCGTCGTGA | 60.807 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4030 | 4860 | 0.027063 | AAAGCGTGTTTTCCGTCGTG | 59.973 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4031 | 4861 | 0.728542 | AAAAGCGTGTTTTCCGTCGT | 59.271 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4032 | 4862 | 2.649140 | TAAAAGCGTGTTTTCCGTCG | 57.351 | 45.000 | 1.50 | 0.00 | 0.00 | 5.12 |
4033 | 4863 | 3.682921 | TGTTAAAAGCGTGTTTTCCGTC | 58.317 | 40.909 | 1.50 | 0.00 | 0.00 | 4.79 |
4034 | 4864 | 3.687200 | CTGTTAAAAGCGTGTTTTCCGT | 58.313 | 40.909 | 1.50 | 0.00 | 0.00 | 4.69 |
4035 | 4865 | 2.466205 | GCTGTTAAAAGCGTGTTTTCCG | 59.534 | 45.455 | 0.86 | 0.00 | 32.56 | 4.30 |
4036 | 4866 | 2.792674 | GGCTGTTAAAAGCGTGTTTTCC | 59.207 | 45.455 | 11.53 | 0.00 | 44.52 | 3.13 |
4037 | 4867 | 2.792674 | GGGCTGTTAAAAGCGTGTTTTC | 59.207 | 45.455 | 11.53 | 0.00 | 44.52 | 2.29 |
4038 | 4868 | 2.166664 | TGGGCTGTTAAAAGCGTGTTTT | 59.833 | 40.909 | 11.53 | 3.60 | 44.52 | 2.43 |
4039 | 4869 | 1.751924 | TGGGCTGTTAAAAGCGTGTTT | 59.248 | 42.857 | 11.53 | 0.00 | 44.52 | 2.83 |
4040 | 4870 | 1.394618 | TGGGCTGTTAAAAGCGTGTT | 58.605 | 45.000 | 11.53 | 0.00 | 44.52 | 3.32 |
4041 | 4871 | 1.616159 | ATGGGCTGTTAAAAGCGTGT | 58.384 | 45.000 | 11.53 | 0.00 | 44.52 | 4.49 |
4042 | 4872 | 2.477863 | GCTATGGGCTGTTAAAAGCGTG | 60.478 | 50.000 | 11.53 | 1.42 | 44.52 | 5.34 |
4043 | 4873 | 1.743394 | GCTATGGGCTGTTAAAAGCGT | 59.257 | 47.619 | 11.53 | 3.17 | 44.52 | 5.07 |
4044 | 4874 | 2.475200 | GCTATGGGCTGTTAAAAGCG | 57.525 | 50.000 | 11.53 | 0.00 | 44.52 | 4.68 |
4053 | 4883 | 7.256119 | TTTCTAGAGAATTAGAGCTATGGGCTG | 60.256 | 40.741 | 0.00 | 0.00 | 41.80 | 4.85 |
4054 | 4884 | 6.784969 | TTTCTAGAGAATTAGAGCTATGGGCT | 59.215 | 38.462 | 0.00 | 0.00 | 43.26 | 5.19 |
4055 | 4885 | 6.597832 | TTCTAGAGAATTAGAGCTATGGGC | 57.402 | 41.667 | 0.00 | 0.00 | 42.19 | 5.36 |
4056 | 4886 | 7.039082 | AGCTTTCTAGAGAATTAGAGCTATGGG | 60.039 | 40.741 | 12.41 | 0.00 | 40.61 | 4.00 |
4057 | 4887 | 7.814107 | CAGCTTTCTAGAGAATTAGAGCTATGG | 59.186 | 40.741 | 13.29 | 2.27 | 40.51 | 2.74 |
4058 | 4888 | 8.359642 | ACAGCTTTCTAGAGAATTAGAGCTATG | 58.640 | 37.037 | 13.29 | 7.97 | 40.51 | 2.23 |
4059 | 4889 | 8.477419 | ACAGCTTTCTAGAGAATTAGAGCTAT | 57.523 | 34.615 | 13.29 | 3.19 | 40.51 | 2.97 |
4060 | 4890 | 7.013846 | GGACAGCTTTCTAGAGAATTAGAGCTA | 59.986 | 40.741 | 13.29 | 0.00 | 40.51 | 3.32 |
4061 | 4891 | 6.183360 | GGACAGCTTTCTAGAGAATTAGAGCT | 60.183 | 42.308 | 9.43 | 9.43 | 42.14 | 4.09 |
4062 | 4892 | 5.983118 | GGACAGCTTTCTAGAGAATTAGAGC | 59.017 | 44.000 | 0.00 | 5.81 | 35.51 | 4.09 |
4063 | 4893 | 6.183360 | ACGGACAGCTTTCTAGAGAATTAGAG | 60.183 | 42.308 | 0.00 | 0.00 | 33.54 | 2.43 |
4064 | 4894 | 5.652891 | ACGGACAGCTTTCTAGAGAATTAGA | 59.347 | 40.000 | 0.00 | 0.00 | 33.54 | 2.10 |
4065 | 4895 | 5.746245 | CACGGACAGCTTTCTAGAGAATTAG | 59.254 | 44.000 | 0.00 | 0.00 | 33.54 | 1.73 |
4066 | 4896 | 5.417894 | TCACGGACAGCTTTCTAGAGAATTA | 59.582 | 40.000 | 0.00 | 0.00 | 33.54 | 1.40 |
4067 | 4897 | 4.220821 | TCACGGACAGCTTTCTAGAGAATT | 59.779 | 41.667 | 0.00 | 0.00 | 33.54 | 2.17 |
4068 | 4898 | 3.764434 | TCACGGACAGCTTTCTAGAGAAT | 59.236 | 43.478 | 0.00 | 0.00 | 33.54 | 2.40 |
4069 | 4899 | 3.154710 | TCACGGACAGCTTTCTAGAGAA | 58.845 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
4070 | 4900 | 2.750166 | CTCACGGACAGCTTTCTAGAGA | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
4071 | 4901 | 2.490115 | ACTCACGGACAGCTTTCTAGAG | 59.510 | 50.000 | 12.15 | 12.15 | 0.00 | 2.43 |
4072 | 4902 | 2.229062 | CACTCACGGACAGCTTTCTAGA | 59.771 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4073 | 4903 | 2.029828 | ACACTCACGGACAGCTTTCTAG | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4074 | 4904 | 1.961394 | ACACTCACGGACAGCTTTCTA | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
4075 | 4905 | 0.753262 | ACACTCACGGACAGCTTTCT | 59.247 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4076 | 4906 | 2.329379 | CTACACTCACGGACAGCTTTC | 58.671 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
4077 | 4907 | 1.605712 | GCTACACTCACGGACAGCTTT | 60.606 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4078 | 4908 | 0.038159 | GCTACACTCACGGACAGCTT | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
4079 | 4909 | 1.179174 | TGCTACACTCACGGACAGCT | 61.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4080 | 4910 | 0.108615 | ATGCTACACTCACGGACAGC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4081 | 4911 | 1.995484 | CAATGCTACACTCACGGACAG | 59.005 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4082 | 4912 | 1.343142 | ACAATGCTACACTCACGGACA | 59.657 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4083 | 4913 | 2.080286 | ACAATGCTACACTCACGGAC | 57.920 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4084 | 4914 | 2.224185 | ACAACAATGCTACACTCACGGA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
4085 | 4915 | 2.143122 | ACAACAATGCTACACTCACGG | 58.857 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
4086 | 4916 | 3.878086 | AACAACAATGCTACACTCACG | 57.122 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
4087 | 4917 | 4.670621 | CGAAAACAACAATGCTACACTCAC | 59.329 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
4088 | 4918 | 4.788201 | GCGAAAACAACAATGCTACACTCA | 60.788 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4089 | 4919 | 3.664025 | GCGAAAACAACAATGCTACACTC | 59.336 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4090 | 4920 | 3.315191 | AGCGAAAACAACAATGCTACACT | 59.685 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
4091 | 4921 | 3.628017 | AGCGAAAACAACAATGCTACAC | 58.372 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
4092 | 4922 | 3.980646 | AGCGAAAACAACAATGCTACA | 57.019 | 38.095 | 0.00 | 0.00 | 0.00 | 2.74 |
4093 | 4923 | 5.332280 | GGAAAAGCGAAAACAACAATGCTAC | 60.332 | 40.000 | 0.00 | 0.00 | 31.41 | 3.58 |
4094 | 4924 | 4.742659 | GGAAAAGCGAAAACAACAATGCTA | 59.257 | 37.500 | 0.00 | 0.00 | 31.41 | 3.49 |
4095 | 4925 | 3.555547 | GGAAAAGCGAAAACAACAATGCT | 59.444 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
4096 | 4926 | 3.303066 | GGGAAAAGCGAAAACAACAATGC | 60.303 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
4097 | 4927 | 3.060607 | CGGGAAAAGCGAAAACAACAATG | 60.061 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
4098 | 4928 | 3.120041 | CGGGAAAAGCGAAAACAACAAT | 58.880 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
4099 | 4929 | 2.531206 | CGGGAAAAGCGAAAACAACAA | 58.469 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
4100 | 4930 | 1.202313 | CCGGGAAAAGCGAAAACAACA | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
4101 | 4931 | 1.202325 | ACCGGGAAAAGCGAAAACAAC | 60.202 | 47.619 | 6.32 | 0.00 | 0.00 | 3.32 |
4102 | 4932 | 1.065851 | GACCGGGAAAAGCGAAAACAA | 59.934 | 47.619 | 6.32 | 0.00 | 0.00 | 2.83 |
4103 | 4933 | 0.664224 | GACCGGGAAAAGCGAAAACA | 59.336 | 50.000 | 6.32 | 0.00 | 0.00 | 2.83 |
4104 | 4934 | 0.949397 | AGACCGGGAAAAGCGAAAAC | 59.051 | 50.000 | 6.32 | 0.00 | 0.00 | 2.43 |
4105 | 4935 | 0.948678 | CAGACCGGGAAAAGCGAAAA | 59.051 | 50.000 | 6.32 | 0.00 | 0.00 | 2.29 |
4106 | 4936 | 0.887387 | CCAGACCGGGAAAAGCGAAA | 60.887 | 55.000 | 6.32 | 0.00 | 0.00 | 3.46 |
4107 | 4937 | 1.302192 | CCAGACCGGGAAAAGCGAA | 60.302 | 57.895 | 6.32 | 0.00 | 0.00 | 4.70 |
4108 | 4938 | 2.345991 | CCAGACCGGGAAAAGCGA | 59.654 | 61.111 | 6.32 | 0.00 | 0.00 | 4.93 |
4109 | 4939 | 2.032071 | ACCAGACCGGGAAAAGCG | 59.968 | 61.111 | 6.32 | 0.00 | 40.22 | 4.68 |
4110 | 4940 | 2.626780 | GCACCAGACCGGGAAAAGC | 61.627 | 63.158 | 6.32 | 0.00 | 40.22 | 3.51 |
4111 | 4941 | 0.609131 | ATGCACCAGACCGGGAAAAG | 60.609 | 55.000 | 6.32 | 0.00 | 40.22 | 2.27 |
4112 | 4942 | 0.893270 | CATGCACCAGACCGGGAAAA | 60.893 | 55.000 | 6.32 | 0.00 | 40.22 | 2.29 |
4113 | 4943 | 1.303236 | CATGCACCAGACCGGGAAA | 60.303 | 57.895 | 6.32 | 0.00 | 40.22 | 3.13 |
4114 | 4944 | 2.350895 | CATGCACCAGACCGGGAA | 59.649 | 61.111 | 6.32 | 0.00 | 40.22 | 3.97 |
4115 | 4945 | 3.716195 | CCATGCACCAGACCGGGA | 61.716 | 66.667 | 6.32 | 0.00 | 40.22 | 5.14 |
4116 | 4946 | 4.033776 | ACCATGCACCAGACCGGG | 62.034 | 66.667 | 6.32 | 0.00 | 40.22 | 5.73 |
4117 | 4947 | 2.747460 | CACCATGCACCAGACCGG | 60.747 | 66.667 | 0.00 | 0.00 | 42.50 | 5.28 |
4118 | 4948 | 2.032528 | ACACCATGCACCAGACCG | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
4119 | 4949 | 1.228245 | ACACACCATGCACCAGACC | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
4120 | 4950 | 1.951510 | CACACACCATGCACCAGAC | 59.048 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
4121 | 4951 | 1.898094 | GCACACACCATGCACCAGA | 60.898 | 57.895 | 0.00 | 0.00 | 42.88 | 3.86 |
4122 | 4952 | 2.646719 | GCACACACCATGCACCAG | 59.353 | 61.111 | 0.00 | 0.00 | 42.88 | 4.00 |
4123 | 4953 | 2.911509 | GGCACACACCATGCACCA | 60.912 | 61.111 | 0.00 | 0.00 | 45.27 | 4.17 |
4124 | 4954 | 2.598394 | AGGCACACACCATGCACC | 60.598 | 61.111 | 0.00 | 0.00 | 45.27 | 5.01 |
4125 | 4955 | 2.646719 | CAGGCACACACCATGCAC | 59.353 | 61.111 | 0.00 | 0.00 | 45.27 | 4.57 |
4126 | 4956 | 2.598099 | CCAGGCACACACCATGCA | 60.598 | 61.111 | 0.00 | 0.00 | 45.27 | 3.96 |
4127 | 4957 | 4.060038 | GCCAGGCACACACCATGC | 62.060 | 66.667 | 6.55 | 0.00 | 42.62 | 4.06 |
4128 | 4958 | 1.904865 | AAGCCAGGCACACACCATG | 60.905 | 57.895 | 15.80 | 0.00 | 0.00 | 3.66 |
4129 | 4959 | 1.904865 | CAAGCCAGGCACACACCAT | 60.905 | 57.895 | 15.80 | 0.00 | 0.00 | 3.55 |
4130 | 4960 | 2.519063 | CAAGCCAGGCACACACCA | 60.519 | 61.111 | 15.80 | 0.00 | 0.00 | 4.17 |
4131 | 4961 | 3.297620 | CCAAGCCAGGCACACACC | 61.298 | 66.667 | 15.80 | 0.00 | 0.00 | 4.16 |
4139 | 4969 | 3.458163 | CATGCCAGCCAAGCCAGG | 61.458 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
4140 | 4970 | 3.458163 | CCATGCCAGCCAAGCCAG | 61.458 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4142 | 4972 | 4.764771 | TCCCATGCCAGCCAAGCC | 62.765 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
4143 | 4973 | 2.443390 | ATCCCATGCCAGCCAAGC | 60.443 | 61.111 | 0.00 | 0.00 | 0.00 | 4.01 |
4144 | 4974 | 2.131709 | CCATCCCATGCCAGCCAAG | 61.132 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
4145 | 4975 | 2.042741 | CCATCCCATGCCAGCCAA | 60.043 | 61.111 | 0.00 | 0.00 | 0.00 | 4.52 |
4146 | 4976 | 2.624454 | TTCCATCCCATGCCAGCCA | 61.624 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
4147 | 4977 | 2.129785 | GTTCCATCCCATGCCAGCC | 61.130 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
4148 | 4978 | 0.757935 | ATGTTCCATCCCATGCCAGC | 60.758 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4149 | 4979 | 1.037493 | CATGTTCCATCCCATGCCAG | 58.963 | 55.000 | 0.00 | 0.00 | 32.80 | 4.85 |
4150 | 4980 | 0.335705 | ACATGTTCCATCCCATGCCA | 59.664 | 50.000 | 0.00 | 0.00 | 41.69 | 4.92 |
4151 | 4981 | 2.362077 | GTTACATGTTCCATCCCATGCC | 59.638 | 50.000 | 2.30 | 0.00 | 41.69 | 4.40 |
4152 | 4982 | 2.033299 | CGTTACATGTTCCATCCCATGC | 59.967 | 50.000 | 2.30 | 0.00 | 41.69 | 4.06 |
4153 | 4983 | 3.278574 | ACGTTACATGTTCCATCCCATG | 58.721 | 45.455 | 2.30 | 0.00 | 43.21 | 3.66 |
4154 | 4984 | 3.541632 | GACGTTACATGTTCCATCCCAT | 58.458 | 45.455 | 2.30 | 0.00 | 0.00 | 4.00 |
4155 | 4985 | 2.675603 | CGACGTTACATGTTCCATCCCA | 60.676 | 50.000 | 2.30 | 0.00 | 0.00 | 4.37 |
4156 | 4986 | 1.931172 | CGACGTTACATGTTCCATCCC | 59.069 | 52.381 | 2.30 | 0.00 | 0.00 | 3.85 |
4157 | 4987 | 1.931172 | CCGACGTTACATGTTCCATCC | 59.069 | 52.381 | 2.30 | 0.00 | 0.00 | 3.51 |
4158 | 4988 | 2.613691 | ACCGACGTTACATGTTCCATC | 58.386 | 47.619 | 2.30 | 0.00 | 0.00 | 3.51 |
4159 | 4989 | 2.739913 | CAACCGACGTTACATGTTCCAT | 59.260 | 45.455 | 2.30 | 0.00 | 0.00 | 3.41 |
4160 | 4990 | 2.136728 | CAACCGACGTTACATGTTCCA | 58.863 | 47.619 | 2.30 | 0.00 | 0.00 | 3.53 |
4161 | 4991 | 1.461897 | CCAACCGACGTTACATGTTCC | 59.538 | 52.381 | 2.30 | 0.00 | 0.00 | 3.62 |
4162 | 4992 | 2.137523 | ACCAACCGACGTTACATGTTC | 58.862 | 47.619 | 2.30 | 0.00 | 0.00 | 3.18 |
4163 | 4993 | 2.243602 | ACCAACCGACGTTACATGTT | 57.756 | 45.000 | 2.30 | 0.00 | 0.00 | 2.71 |
4164 | 4994 | 3.255725 | CATACCAACCGACGTTACATGT | 58.744 | 45.455 | 2.69 | 2.69 | 0.00 | 3.21 |
4165 | 4995 | 2.605818 | CCATACCAACCGACGTTACATG | 59.394 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4166 | 4996 | 2.419021 | CCCATACCAACCGACGTTACAT | 60.419 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4167 | 4997 | 1.067000 | CCCATACCAACCGACGTTACA | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
4168 | 4998 | 1.643880 | CCCATACCAACCGACGTTAC | 58.356 | 55.000 | 0.00 | 0.00 | 0.00 | 2.50 |
4169 | 4999 | 0.108233 | GCCCATACCAACCGACGTTA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4170 | 5000 | 1.376295 | GCCCATACCAACCGACGTT | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 3.99 |
4171 | 5001 | 2.234913 | GAGCCCATACCAACCGACGT | 62.235 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4172 | 5002 | 1.520787 | GAGCCCATACCAACCGACG | 60.521 | 63.158 | 0.00 | 0.00 | 0.00 | 5.12 |
4173 | 5003 | 1.520787 | CGAGCCCATACCAACCGAC | 60.521 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
4174 | 5004 | 1.985662 | ACGAGCCCATACCAACCGA | 60.986 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
4175 | 5005 | 2.582436 | ACGAGCCCATACCAACCG | 59.418 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.