Multiple sequence alignment - TraesCS6A01G013300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G013300 chr6A 100.000 5693 0 0 3680 9372 6565360 6571052 0.000000e+00 10514.0
1 TraesCS6A01G013300 chr6A 100.000 3338 0 0 1 3338 6561681 6565018 0.000000e+00 6165.0
2 TraesCS6A01G013300 chr6A 92.857 182 9 3 2078 2256 6563591 6563411 2.600000e-65 261.0
3 TraesCS6A01G013300 chr6A 92.857 182 9 3 1731 1911 6563936 6563758 2.600000e-65 261.0
4 TraesCS6A01G013300 chr6A 91.304 46 3 1 814 858 531546294 531546339 2.830000e-05 62.1
5 TraesCS6A01G013300 chr6D 95.951 2791 99 10 5754 8537 6952151 6954934 0.000000e+00 4516.0
6 TraesCS6A01G013300 chr6D 97.637 804 18 1 3683 4485 6945746 6946549 0.000000e+00 1378.0
7 TraesCS6A01G013300 chr6D 95.759 731 27 2 8644 9372 6954936 6955664 0.000000e+00 1175.0
8 TraesCS6A01G013300 chr6D 95.270 740 23 1 5029 5756 6947440 6948179 0.000000e+00 1162.0
9 TraesCS6A01G013300 chr6D 93.954 612 27 3 2634 3244 6945027 6945629 0.000000e+00 917.0
10 TraesCS6A01G013300 chr6D 93.271 535 20 4 4467 4986 6946909 6947442 0.000000e+00 774.0
11 TraesCS6A01G013300 chr6D 91.604 536 26 11 929 1450 6943907 6944437 0.000000e+00 723.0
12 TraesCS6A01G013300 chr6D 93.689 206 10 3 2438 2642 6944803 6945006 1.180000e-78 305.0
13 TraesCS6A01G013300 chr6D 95.420 131 5 1 1895 2024 392897150 392897020 3.430000e-49 207.0
14 TraesCS6A01G013300 chr6D 95.349 129 5 1 1896 2024 406391531 406391404 4.440000e-48 204.0
15 TraesCS6A01G013300 chr6D 96.739 92 3 0 3247 3338 6945749 6945658 4.530000e-33 154.0
16 TraesCS6A01G013300 chr6D 95.402 87 2 2 2961 3045 6944695 6944781 4.560000e-28 137.0
17 TraesCS6A01G013300 chr6D 94.340 53 3 0 1449 1501 6944992 6945044 2.170000e-11 82.4
18 TraesCS6A01G013300 chr6D 100.000 38 0 0 1464 1501 6944485 6944522 4.700000e-08 71.3
19 TraesCS6A01G013300 chr6D 96.875 32 0 1 2252 2283 441667177 441667147 1.700000e-02 52.8
20 TraesCS6A01G013300 chrUn 91.521 3267 206 33 5754 8972 76141628 76144871 0.000000e+00 4433.0
21 TraesCS6A01G013300 chrUn 90.349 2725 180 36 6281 8972 76192885 76195559 0.000000e+00 3498.0
22 TraesCS6A01G013300 chrUn 93.533 2134 119 5 6035 8155 301930767 301928640 0.000000e+00 3158.0
23 TraesCS6A01G013300 chrUn 87.398 1349 107 27 7669 8972 76155851 76157181 0.000000e+00 1491.0
24 TraesCS6A01G013300 chrUn 92.947 879 42 7 591 1454 307845454 307844581 0.000000e+00 1262.0
25 TraesCS6A01G013300 chrUn 90.275 874 66 12 591 1450 76185972 76186840 0.000000e+00 1125.0
26 TraesCS6A01G013300 chrUn 94.055 656 39 0 3680 4335 76187545 76188200 0.000000e+00 996.0
27 TraesCS6A01G013300 chrUn 90.991 666 49 2 3681 4335 76136783 76137448 0.000000e+00 887.0
28 TraesCS6A01G013300 chrUn 93.585 530 26 6 5754 6280 76191959 76192483 0.000000e+00 784.0
29 TraesCS6A01G013300 chrUn 88.076 629 56 18 929 1547 76134689 76135308 0.000000e+00 728.0
30 TraesCS6A01G013300 chrUn 86.377 668 44 19 2634 3298 76135863 76136486 0.000000e+00 686.0
31 TraesCS6A01G013300 chrUn 93.095 420 26 2 4494 4912 76188886 76189303 6.220000e-171 612.0
32 TraesCS6A01G013300 chrUn 91.905 420 17 7 12 415 307846736 307846318 1.060000e-158 571.0
33 TraesCS6A01G013300 chrUn 93.915 378 19 3 2963 3338 76187117 76187492 1.370000e-157 568.0
34 TraesCS6A01G013300 chrUn 89.357 451 33 9 855 1290 395616702 395616252 3.820000e-153 553.0
35 TraesCS6A01G013300 chrUn 88.209 441 28 11 4589 5006 307200289 307200728 1.090000e-138 505.0
36 TraesCS6A01G013300 chrUn 88.209 441 28 11 4589 5006 327134568 327135007 1.090000e-138 505.0
37 TraesCS6A01G013300 chrUn 90.789 380 25 2 1556 1925 307844494 307844115 5.050000e-137 499.0
38 TraesCS6A01G013300 chrUn 89.104 413 22 6 2251 2642 307843855 307843445 8.460000e-135 492.0
39 TraesCS6A01G013300 chrUn 93.478 322 14 3 2757 3077 467746679 467746364 1.100000e-128 472.0
40 TraesCS6A01G013300 chrUn 93.972 282 11 4 5754 6033 307204029 307204306 1.130000e-113 422.0
41 TraesCS6A01G013300 chrUn 93.972 282 11 4 5754 6033 432682052 432682329 1.130000e-113 422.0
42 TraesCS6A01G013300 chrUn 85.612 417 36 10 8570 8972 301928306 301927900 5.240000e-112 416.0
43 TraesCS6A01G013300 chrUn 98.421 190 3 0 412 601 307845754 307845565 1.510000e-87 335.0
44 TraesCS6A01G013300 chrUn 95.312 192 7 2 412 601 76185670 76185861 4.250000e-78 303.0
45 TraesCS6A01G013300 chrUn 84.918 305 22 13 8196 8482 301928642 301928344 4.280000e-73 287.0
46 TraesCS6A01G013300 chrUn 84.641 306 26 9 2329 2616 76187220 76187522 1.540000e-72 285.0
47 TraesCS6A01G013300 chrUn 91.304 184 10 4 2078 2256 307844129 307844311 7.270000e-61 246.0
48 TraesCS6A01G013300 chrUn 84.746 236 17 1 2329 2545 76136252 76136487 1.580000e-52 219.0
49 TraesCS6A01G013300 chrUn 90.850 153 9 3 3680 3831 467746078 467745930 5.740000e-47 200.0
50 TraesCS6A01G013300 chrUn 78.485 330 24 19 2983 3274 76135427 76135747 1.250000e-38 172.0
51 TraesCS6A01G013300 chrUn 87.402 127 6 6 2640 2766 307843418 307843302 4.560000e-28 137.0
52 TraesCS6A01G013300 chrUn 83.721 129 10 3 2289 2415 76135482 76135601 2.770000e-20 111.0
53 TraesCS6A01G013300 chrUn 95.714 70 2 1 1452 1521 307844557 307844489 2.770000e-20 111.0
54 TraesCS6A01G013300 chrUn 87.805 82 6 4 1449 1528 76135828 76135907 1.000000e-14 93.5
55 TraesCS6A01G013300 chrUn 86.076 79 7 4 1452 1528 307843456 307843380 2.170000e-11 82.4
56 TraesCS6A01G013300 chrUn 82.418 91 8 5 1464 1547 76186888 76186977 1.310000e-08 73.1
57 TraesCS6A01G013300 chrUn 96.970 33 0 1 2252 2284 94957059 94957028 5.000000e-03 54.7
58 TraesCS6A01G013300 chr6B 93.533 2134 119 5 6035 8155 12558643 12560770 0.000000e+00 3158.0
59 TraesCS6A01G013300 chr6B 85.612 417 36 10 8570 8972 12561104 12561510 5.240000e-112 416.0
60 TraesCS6A01G013300 chr6B 84.918 305 22 13 8196 8482 12560768 12561066 4.280000e-73 287.0
61 TraesCS6A01G013300 chr4B 84.773 440 39 8 1 413 535569862 535569424 5.240000e-112 416.0
62 TraesCS6A01G013300 chr2D 91.262 309 18 5 515 821 439656528 439656227 6.770000e-111 412.0
63 TraesCS6A01G013300 chr2D 95.349 129 6 0 1896 2024 426427792 426427920 1.230000e-48 206.0
64 TraesCS6A01G013300 chr2D 95.349 129 5 1 1896 2024 396613791 396613918 4.440000e-48 204.0
65 TraesCS6A01G013300 chr5A 83.220 441 34 14 1 415 483018643 483019069 1.490000e-97 368.0
66 TraesCS6A01G013300 chr5A 85.978 271 20 6 490 759 483028770 483029023 3.330000e-69 274.0
67 TraesCS6A01G013300 chr5A 92.405 79 6 0 522 600 483028734 483028812 7.690000e-21 113.0
68 TraesCS6A01G013300 chr2B 96.923 130 4 0 1895 2024 39787711 39787840 1.580000e-52 219.0
69 TraesCS6A01G013300 chr2B 96.970 33 0 1 2252 2284 734780779 734780748 5.000000e-03 54.7
70 TraesCS6A01G013300 chr1D 96.063 127 5 0 1898 2024 393753456 393753330 3.430000e-49 207.0
71 TraesCS6A01G013300 chr3A 95.385 130 5 1 1895 2024 585605629 585605757 1.230000e-48 206.0
72 TraesCS6A01G013300 chr3A 81.356 236 15 11 525 759 662921501 662921294 2.090000e-36 165.0
73 TraesCS6A01G013300 chr3A 89.247 93 6 2 716 807 686261946 686261857 7.690000e-21 113.0
74 TraesCS6A01G013300 chr3A 94.737 38 1 1 764 800 686261854 686261817 3.660000e-04 58.4
75 TraesCS6A01G013300 chr5D 95.349 129 5 1 1896 2024 174580805 174580678 4.440000e-48 204.0
76 TraesCS6A01G013300 chr5D 86.207 58 8 0 4357 4414 546904508 546904565 7.860000e-06 63.9
77 TraesCS6A01G013300 chr5D 96.875 32 0 1 2252 2283 506158181 506158151 1.700000e-02 52.8
78 TraesCS6A01G013300 chr1B 93.985 133 8 0 1892 2024 628050674 628050806 1.600000e-47 202.0
79 TraesCS6A01G013300 chr4A 87.963 108 6 4 716 822 190405274 190405375 4.600000e-23 121.0
80 TraesCS6A01G013300 chr4A 90.323 93 5 2 716 807 190405127 190405216 1.650000e-22 119.0
81 TraesCS6A01G013300 chr4A 97.297 37 0 1 2252 2288 526637825 526637860 2.830000e-05 62.1
82 TraesCS6A01G013300 chr4A 92.857 42 1 2 760 800 190405217 190405257 1.020000e-04 60.2
83 TraesCS6A01G013300 chr2A 95.238 42 0 2 816 855 398441881 398441922 2.180000e-06 65.8
84 TraesCS6A01G013300 chr2A 100.000 35 0 0 821 855 398874084 398874050 2.180000e-06 65.8
85 TraesCS6A01G013300 chr4D 96.875 32 0 1 2252 2283 466382610 466382580 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G013300 chr6A 6561681 6571052 9371 False 8339.500000 10514 100.000000 1 9372 2 chr6A.!!$F2 9371
1 TraesCS6A01G013300 chr6A 6563411 6563936 525 True 261.000000 261 92.857000 1731 2256 2 chr6A.!!$R1 525
2 TraesCS6A01G013300 chr6D 6943907 6955664 11757 False 1021.881818 4516 95.170636 929 9372 11 chr6D.!!$F1 8443
3 TraesCS6A01G013300 chrUn 76141628 76144871 3243 False 4433.000000 4433 91.521000 5754 8972 1 chrUn.!!$F1 3218
4 TraesCS6A01G013300 chrUn 76155851 76157181 1330 False 1491.000000 1491 87.398000 7669 8972 1 chrUn.!!$F2 1303
5 TraesCS6A01G013300 chrUn 301927900 301930767 2867 True 1287.000000 3158 88.021000 6035 8972 3 chrUn.!!$R3 2937
6 TraesCS6A01G013300 chrUn 76185670 76195559 9889 False 916.011111 3498 90.849444 412 8972 9 chrUn.!!$F7 8560
7 TraesCS6A01G013300 chrUn 307200289 307204306 4017 False 463.500000 505 91.090500 4589 6033 2 chrUn.!!$F8 1444
8 TraesCS6A01G013300 chrUn 307843302 307846736 3434 True 436.175000 1262 91.544750 12 2766 8 chrUn.!!$R4 2754
9 TraesCS6A01G013300 chrUn 76134689 76137448 2759 False 413.785714 887 85.743000 929 4335 7 chrUn.!!$F6 3406
10 TraesCS6A01G013300 chrUn 467745930 467746679 749 True 336.000000 472 92.164000 2757 3831 2 chrUn.!!$R5 1074
11 TraesCS6A01G013300 chr6B 12558643 12561510 2867 False 1287.000000 3158 88.021000 6035 8972 3 chr6B.!!$F1 2937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 268 0.691078 ACTGGCTATGGGGACGATGT 60.691 55.000 0.00 0.00 0.00 3.06 F
1213 1940 0.038892 GTACCTCGTCCGCTTTGTCA 60.039 55.000 0.00 0.00 0.00 3.58 F
2106 2905 0.034896 AGTTTAGCCGTGTCCCTGTG 59.965 55.000 0.00 0.00 0.00 3.66 F
2130 2929 0.032678 AAGGTGACTCTGCGAGTGTG 59.967 55.000 14.47 0.00 43.53 3.82 F
2219 3018 0.034380 AGCACTCATCCTGCTTGCAT 60.034 50.000 0.00 0.00 42.54 3.96 F
2240 3039 0.037882 GAAGGCAAGCTGGAAAAGGC 60.038 55.000 0.00 0.00 0.00 4.35 F
2244 3043 0.038801 GCAAGCTGGAAAAGGCACTC 60.039 55.000 0.00 0.00 38.49 3.51 F
3776 4813 0.179163 GGTACAATGAAAGCGCTGGC 60.179 55.000 12.58 6.77 40.37 4.85 F
4871 6891 0.251297 TGTCCCCTGCATCAAACTGG 60.251 55.000 0.00 0.00 0.00 4.00 F
6582 13602 0.116342 TGTGGAGGTGCTCTTAGGGA 59.884 55.000 0.00 0.00 0.00 4.20 F
7089 14109 1.065401 CGGCAGTGAGTTTTTCAGCAA 59.935 47.619 0.00 0.00 36.21 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2886 0.034896 CACAGGGACACGGCTAAACT 59.965 55.000 0.00 0.00 0.00 2.66 R
2125 2924 0.037326 CCATCACCTACGTGCACACT 60.037 55.000 18.64 3.22 40.04 3.55 R
2909 3911 0.801251 GACAACAGCACTCATCTGCC 59.199 55.000 0.00 0.00 37.96 4.85 R
4093 5130 1.133575 CATTGGTGATCCTGCCCTCAT 60.134 52.381 0.00 0.00 34.23 2.90 R
4435 6067 2.103373 GAGAGCAGGTACTCCATCACA 58.897 52.381 0.00 0.00 34.60 3.58 R
4528 6538 2.650116 GCAGAGAACAGGCGGAGGA 61.650 63.158 0.00 0.00 0.00 3.71 R
4548 6559 3.505386 GAGAGGAGGAGGATATCAGCAA 58.495 50.000 4.83 0.00 0.00 3.91 R
5011 7334 0.187606 TAGCTTATCCTCGAGCCCCA 59.812 55.000 6.99 0.00 39.71 4.96 R
7068 14088 0.944386 GCTGAAAAACTCACTGCCGA 59.056 50.000 0.00 0.00 0.00 5.54 R
7531 14553 0.166814 GATGGTGAGCACAGCGAAAC 59.833 55.000 8.78 0.00 46.03 2.78 R
9319 16423 0.185175 GGAGGTCCCAACAAACACCT 59.815 55.000 0.00 0.00 42.24 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.609427 TCACTAGGAGATGCATGCAC 57.391 50.000 25.37 16.77 0.00 4.57
25 26 1.089920 AGGAGATGCATGCACGAAAC 58.910 50.000 25.37 12.57 0.00 2.78
60 62 9.906660 TTTTTAGTTGGCATCAAACATAGTTAG 57.093 29.630 0.00 0.00 34.28 2.34
70 80 8.233190 GCATCAAACATAGTTAGGATTGCTATC 58.767 37.037 0.00 0.00 0.00 2.08
184 195 9.695526 TTACCATGAGAACTTCAAAATTTCATG 57.304 29.630 0.00 8.48 39.77 3.07
186 197 7.591006 CATGAGAACTTCAAAATTTCATGGG 57.409 36.000 7.89 0.00 39.77 4.00
214 225 1.745489 GACGGCTAGCAAGGTTGGG 60.745 63.158 18.24 0.00 0.00 4.12
257 268 0.691078 ACTGGCTATGGGGACGATGT 60.691 55.000 0.00 0.00 0.00 3.06
353 367 1.541147 GGTGCTTGCTACATTGCTTGA 59.459 47.619 0.00 0.00 0.00 3.02
364 378 6.151480 TGCTACATTGCTTGATTGATTGAAGA 59.849 34.615 0.00 0.00 0.00 2.87
388 405 8.095792 AGATTGCCTCTCTATGATGAAACTATG 58.904 37.037 0.00 0.00 0.00 2.23
624 1331 2.672961 TAGCACCTTGAGGATTCGTG 57.327 50.000 3.59 0.00 38.94 4.35
659 1366 7.047271 AGTTGTATGTTTCATTTGCACCTTTT 58.953 30.769 0.00 0.00 0.00 2.27
664 1371 4.815308 TGTTTCATTTGCACCTTTTCATGG 59.185 37.500 0.00 0.00 0.00 3.66
740 1447 3.517100 AGATGCTCTGCTTCAGAACCTTA 59.483 43.478 7.90 0.00 40.18 2.69
742 1449 4.292186 TGCTCTGCTTCAGAACCTTATT 57.708 40.909 0.00 0.00 40.18 1.40
743 1450 5.420725 TGCTCTGCTTCAGAACCTTATTA 57.579 39.130 0.00 0.00 40.18 0.98
744 1451 5.994250 TGCTCTGCTTCAGAACCTTATTAT 58.006 37.500 0.00 0.00 40.18 1.28
745 1452 7.124573 TGCTCTGCTTCAGAACCTTATTATA 57.875 36.000 0.00 0.00 40.18 0.98
746 1453 7.564793 TGCTCTGCTTCAGAACCTTATTATAA 58.435 34.615 0.00 0.00 40.18 0.98
1009 1723 5.127356 GGTAGCTAGTCACCAGTTACTGAAT 59.873 44.000 14.66 0.00 34.77 2.57
1198 1925 1.449070 GTGCGGCTACCAAGGTACC 60.449 63.158 2.73 2.73 0.00 3.34
1213 1940 0.038892 GTACCTCGTCCGCTTTGTCA 60.039 55.000 0.00 0.00 0.00 3.58
1227 1954 1.882912 TTGTCATCGCTGCAGTTTCT 58.117 45.000 16.64 0.00 0.00 2.52
1290 2029 1.300620 GGTGCGTGCAGTGACTACA 60.301 57.895 0.00 0.00 0.00 2.74
1457 2229 5.755409 TGTAAGTCCTCCACATGTAACAT 57.245 39.130 0.00 0.00 0.00 2.71
1512 2285 7.339482 AGGGAGTTTAGAGTTTGAATGGATAC 58.661 38.462 0.00 0.00 0.00 2.24
1526 2299 3.548745 TGGATACAGGCATGTTCTGAG 57.451 47.619 10.25 1.19 46.17 3.35
1527 2300 2.840038 TGGATACAGGCATGTTCTGAGT 59.160 45.455 10.25 10.61 46.17 3.41
1528 2301 3.264193 TGGATACAGGCATGTTCTGAGTT 59.736 43.478 10.25 7.97 46.17 3.01
1530 2303 1.901591 ACAGGCATGTTCTGAGTTGG 58.098 50.000 19.93 0.00 35.63 3.77
1534 2307 0.807496 GCATGTTCTGAGTTGGCTCC 59.193 55.000 0.00 0.00 40.95 4.70
1536 2309 0.976641 ATGTTCTGAGTTGGCTCCGA 59.023 50.000 0.00 0.00 40.95 4.55
1555 2334 2.712057 ACGTAGTTCCACCAGTAACG 57.288 50.000 0.00 0.00 37.78 3.18
1557 2336 1.718396 GTAGTTCCACCAGTAACGGC 58.282 55.000 0.00 0.00 0.00 5.68
1663 2460 2.508887 GCCGAGCTGAGCAGTGAG 60.509 66.667 7.39 0.00 0.00 3.51
1672 2469 0.542938 TGAGCAGTGAGTACCCAGCT 60.543 55.000 0.00 0.00 34.12 4.24
1703 2500 2.029290 CGGTAGCAACTTCTACACCACT 60.029 50.000 3.74 0.00 40.42 4.00
1726 2523 3.505835 AGGAGACTCCTCGATCACC 57.494 57.895 18.94 0.00 45.66 4.02
1728 2525 0.395862 GGAGACTCCTCGATCACCCA 60.396 60.000 14.72 0.00 40.33 4.51
1799 2596 2.580962 TGAGTGCTGTGGTAATTTGCA 58.419 42.857 0.00 0.00 0.00 4.08
1807 2604 4.681483 GCTGTGGTAATTTGCACTTTTCTC 59.319 41.667 0.00 0.00 0.00 2.87
1834 2631 1.297456 GCAGAAGAGTGCTGTGCTCC 61.297 60.000 0.00 0.00 40.54 4.70
1917 2716 4.202000 GCTAAACTACTACTCCCTCCGTTC 60.202 50.000 0.00 0.00 0.00 3.95
1919 2718 1.921748 ACTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
1925 2724 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1926 2725 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1929 2728 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1932 2731 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1933 2732 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1934 2733 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1952 2751 9.581099 TTGTCTTTTTAGAGTTTTCAAATGGAC 57.419 29.630 0.00 0.00 0.00 4.02
1953 2752 8.966868 TGTCTTTTTAGAGTTTTCAAATGGACT 58.033 29.630 0.00 0.00 0.00 3.85
1956 2755 9.678941 CTTTTTAGAGTTTTCAAATGGACTACC 57.321 33.333 0.00 0.00 0.00 3.18
1974 2773 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
2009 2808 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2011 2810 4.943705 TGTAGATTCACTCATTTTGCTCCC 59.056 41.667 0.00 0.00 0.00 4.30
2012 2811 4.313020 AGATTCACTCATTTTGCTCCCT 57.687 40.909 0.00 0.00 0.00 4.20
2014 2813 6.011122 AGATTCACTCATTTTGCTCCCTAT 57.989 37.500 0.00 0.00 0.00 2.57
2015 2814 7.141758 AGATTCACTCATTTTGCTCCCTATA 57.858 36.000 0.00 0.00 0.00 1.31
2016 2815 7.753630 AGATTCACTCATTTTGCTCCCTATAT 58.246 34.615 0.00 0.00 0.00 0.86
2020 2819 7.671302 TCACTCATTTTGCTCCCTATATAGTC 58.329 38.462 8.92 0.00 0.00 2.59
2021 2820 7.290014 TCACTCATTTTGCTCCCTATATAGTCA 59.710 37.037 8.92 0.00 0.00 3.41
2022 2821 7.386299 CACTCATTTTGCTCCCTATATAGTCAC 59.614 40.741 8.92 0.00 0.00 3.67
2024 2823 7.445121 TCATTTTGCTCCCTATATAGTCACTG 58.555 38.462 8.92 0.00 0.00 3.66
2026 2825 2.820197 TGCTCCCTATATAGTCACTGCG 59.180 50.000 8.92 0.00 0.00 5.18
2027 2826 2.820787 GCTCCCTATATAGTCACTGCGT 59.179 50.000 8.92 0.00 0.00 5.24
2028 2827 3.119779 GCTCCCTATATAGTCACTGCGTC 60.120 52.174 8.92 0.00 0.00 5.19
2029 2828 4.072839 CTCCCTATATAGTCACTGCGTCA 58.927 47.826 8.92 0.00 0.00 4.35
2030 2829 4.663334 TCCCTATATAGTCACTGCGTCAT 58.337 43.478 8.92 0.00 0.00 3.06
2031 2830 4.700692 TCCCTATATAGTCACTGCGTCATC 59.299 45.833 8.92 0.00 0.00 2.92
2032 2831 4.459337 CCCTATATAGTCACTGCGTCATCA 59.541 45.833 8.92 0.00 0.00 3.07
2033 2832 5.126222 CCCTATATAGTCACTGCGTCATCAT 59.874 44.000 8.92 0.00 0.00 2.45
2034 2833 6.261859 CCTATATAGTCACTGCGTCATCATC 58.738 44.000 8.92 0.00 0.00 2.92
2035 2834 5.712152 ATATAGTCACTGCGTCATCATCA 57.288 39.130 0.00 0.00 0.00 3.07
2036 2835 2.749280 AGTCACTGCGTCATCATCAA 57.251 45.000 0.00 0.00 0.00 2.57
2037 2836 2.614779 AGTCACTGCGTCATCATCAAG 58.385 47.619 0.00 0.00 0.00 3.02
2038 2837 2.028658 AGTCACTGCGTCATCATCAAGT 60.029 45.455 0.00 0.00 0.00 3.16
2039 2838 2.346847 GTCACTGCGTCATCATCAAGTC 59.653 50.000 0.00 0.00 0.00 3.01
2040 2839 1.322637 CACTGCGTCATCATCAAGTCG 59.677 52.381 0.00 0.00 0.00 4.18
2041 2840 1.202348 ACTGCGTCATCATCAAGTCGA 59.798 47.619 0.00 0.00 0.00 4.20
2042 2841 2.159184 ACTGCGTCATCATCAAGTCGAT 60.159 45.455 0.00 0.00 33.27 3.59
2043 2842 3.066760 ACTGCGTCATCATCAAGTCGATA 59.933 43.478 0.00 0.00 31.20 2.92
2044 2843 3.632189 TGCGTCATCATCAAGTCGATAG 58.368 45.455 0.00 0.00 31.20 2.08
2045 2844 3.066760 TGCGTCATCATCAAGTCGATAGT 59.933 43.478 0.00 0.00 31.20 2.12
2046 2845 4.045104 GCGTCATCATCAAGTCGATAGTT 58.955 43.478 0.00 0.00 31.20 2.24
2047 2846 5.212934 GCGTCATCATCAAGTCGATAGTTA 58.787 41.667 0.00 0.00 31.20 2.24
2048 2847 5.859114 GCGTCATCATCAAGTCGATAGTTAT 59.141 40.000 0.00 0.00 31.20 1.89
2049 2848 6.032985 GCGTCATCATCAAGTCGATAGTTATC 59.967 42.308 0.00 0.00 31.20 1.75
2050 2849 7.078228 CGTCATCATCAAGTCGATAGTTATCA 58.922 38.462 0.00 0.00 31.20 2.15
2051 2850 7.752686 CGTCATCATCAAGTCGATAGTTATCAT 59.247 37.037 0.00 0.00 31.20 2.45
2052 2851 9.071221 GTCATCATCAAGTCGATAGTTATCATC 57.929 37.037 0.00 0.00 31.20 2.92
2053 2852 9.018582 TCATCATCAAGTCGATAGTTATCATCT 57.981 33.333 0.00 0.00 31.20 2.90
2054 2853 9.636879 CATCATCAAGTCGATAGTTATCATCTT 57.363 33.333 0.00 1.53 31.20 2.40
2056 2855 9.684448 TCATCAAGTCGATAGTTATCATCTTTC 57.316 33.333 0.00 0.00 31.20 2.62
2057 2856 9.689976 CATCAAGTCGATAGTTATCATCTTTCT 57.310 33.333 0.00 0.00 31.20 2.52
2059 2858 9.737427 TCAAGTCGATAGTTATCATCTTTCTTC 57.263 33.333 0.00 0.00 32.98 2.87
2060 2859 8.973378 CAAGTCGATAGTTATCATCTTTCTTCC 58.027 37.037 0.00 0.00 32.98 3.46
2061 2860 8.472007 AGTCGATAGTTATCATCTTTCTTCCT 57.528 34.615 0.00 0.00 32.98 3.36
2062 2861 8.356657 AGTCGATAGTTATCATCTTTCTTCCTG 58.643 37.037 0.00 0.00 32.98 3.86
2063 2862 7.115663 GTCGATAGTTATCATCTTTCTTCCTGC 59.884 40.741 0.00 0.00 32.98 4.85
2064 2863 6.925718 CGATAGTTATCATCTTTCTTCCTGCA 59.074 38.462 0.00 0.00 32.98 4.41
2065 2864 7.601886 CGATAGTTATCATCTTTCTTCCTGCAT 59.398 37.037 0.00 0.00 32.98 3.96
2066 2865 8.845413 ATAGTTATCATCTTTCTTCCTGCATC 57.155 34.615 0.00 0.00 0.00 3.91
2067 2866 6.897986 AGTTATCATCTTTCTTCCTGCATCT 58.102 36.000 0.00 0.00 0.00 2.90
2068 2867 7.344913 AGTTATCATCTTTCTTCCTGCATCTT 58.655 34.615 0.00 0.00 0.00 2.40
2069 2868 7.833183 AGTTATCATCTTTCTTCCTGCATCTTT 59.167 33.333 0.00 0.00 0.00 2.52
2070 2869 6.696441 ATCATCTTTCTTCCTGCATCTTTC 57.304 37.500 0.00 0.00 0.00 2.62
2071 2870 5.813383 TCATCTTTCTTCCTGCATCTTTCT 58.187 37.500 0.00 0.00 0.00 2.52
2072 2871 5.879223 TCATCTTTCTTCCTGCATCTTTCTC 59.121 40.000 0.00 0.00 0.00 2.87
2073 2872 5.495926 TCTTTCTTCCTGCATCTTTCTCT 57.504 39.130 0.00 0.00 0.00 3.10
2074 2873 5.874093 TCTTTCTTCCTGCATCTTTCTCTT 58.126 37.500 0.00 0.00 0.00 2.85
2075 2874 6.302269 TCTTTCTTCCTGCATCTTTCTCTTT 58.698 36.000 0.00 0.00 0.00 2.52
2076 2875 6.429385 TCTTTCTTCCTGCATCTTTCTCTTTC 59.571 38.462 0.00 0.00 0.00 2.62
2077 2876 4.248859 TCTTCCTGCATCTTTCTCTTTCG 58.751 43.478 0.00 0.00 0.00 3.46
2078 2877 2.977914 TCCTGCATCTTTCTCTTTCGG 58.022 47.619 0.00 0.00 0.00 4.30
2079 2878 2.012673 CCTGCATCTTTCTCTTTCGGG 58.987 52.381 0.00 0.00 0.00 5.14
2080 2879 2.355108 CCTGCATCTTTCTCTTTCGGGA 60.355 50.000 0.00 0.00 0.00 5.14
2081 2880 2.675348 CTGCATCTTTCTCTTTCGGGAC 59.325 50.000 0.00 0.00 0.00 4.46
2096 2895 2.481903 GGGACGTACTAGTTTAGCCG 57.518 55.000 0.00 0.00 0.00 5.52
2097 2896 1.745653 GGGACGTACTAGTTTAGCCGT 59.254 52.381 0.00 2.33 38.73 5.68
2098 2897 2.478539 GGGACGTACTAGTTTAGCCGTG 60.479 54.545 0.00 0.00 36.99 4.94
2099 2898 2.162408 GGACGTACTAGTTTAGCCGTGT 59.838 50.000 0.00 0.00 36.99 4.49
2100 2899 3.420828 GACGTACTAGTTTAGCCGTGTC 58.579 50.000 0.00 0.00 36.99 3.67
2101 2900 2.162408 ACGTACTAGTTTAGCCGTGTCC 59.838 50.000 0.00 0.00 35.99 4.02
2102 2901 2.478539 CGTACTAGTTTAGCCGTGTCCC 60.479 54.545 0.00 0.00 0.00 4.46
2103 2902 1.934410 ACTAGTTTAGCCGTGTCCCT 58.066 50.000 0.00 0.00 0.00 4.20
2104 2903 1.549170 ACTAGTTTAGCCGTGTCCCTG 59.451 52.381 0.00 0.00 0.00 4.45
2105 2904 1.549170 CTAGTTTAGCCGTGTCCCTGT 59.451 52.381 0.00 0.00 0.00 4.00
2106 2905 0.034896 AGTTTAGCCGTGTCCCTGTG 59.965 55.000 0.00 0.00 0.00 3.66
2107 2906 1.302192 TTTAGCCGTGTCCCTGTGC 60.302 57.895 0.00 0.00 0.00 4.57
2108 2907 2.046009 TTTAGCCGTGTCCCTGTGCA 62.046 55.000 0.00 0.00 0.00 4.57
2109 2908 2.449031 TTAGCCGTGTCCCTGTGCAG 62.449 60.000 0.00 0.00 0.00 4.41
2110 2909 4.626081 GCCGTGTCCCTGTGCAGT 62.626 66.667 0.00 0.00 0.00 4.40
2111 2910 3.056458 CCGTGTCCCTGTGCAGTA 58.944 61.111 0.00 0.00 0.00 2.74
2112 2911 1.369692 CCGTGTCCCTGTGCAGTAA 59.630 57.895 0.00 0.00 0.00 2.24
2113 2912 0.670546 CCGTGTCCCTGTGCAGTAAG 60.671 60.000 0.00 0.00 0.00 2.34
2114 2913 0.670546 CGTGTCCCTGTGCAGTAAGG 60.671 60.000 3.46 3.46 0.00 2.69
2115 2914 0.396811 GTGTCCCTGTGCAGTAAGGT 59.603 55.000 8.75 0.00 0.00 3.50
2116 2915 0.396435 TGTCCCTGTGCAGTAAGGTG 59.604 55.000 8.75 2.16 0.00 4.00
2117 2916 0.685097 GTCCCTGTGCAGTAAGGTGA 59.315 55.000 8.75 4.06 0.00 4.02
2118 2917 0.685097 TCCCTGTGCAGTAAGGTGAC 59.315 55.000 8.75 0.00 0.00 3.67
2120 2919 1.338200 CCCTGTGCAGTAAGGTGACTC 60.338 57.143 8.75 0.00 42.68 3.36
2121 2920 1.620819 CCTGTGCAGTAAGGTGACTCT 59.379 52.381 0.00 0.00 42.68 3.24
2122 2921 2.611473 CCTGTGCAGTAAGGTGACTCTG 60.611 54.545 0.00 0.00 42.68 3.35
2124 2923 2.743195 GCAGTAAGGTGACTCTGCG 58.257 57.895 0.00 0.00 44.99 5.18
2125 2924 0.243907 GCAGTAAGGTGACTCTGCGA 59.756 55.000 0.00 0.00 44.99 5.10
2126 2925 1.734047 GCAGTAAGGTGACTCTGCGAG 60.734 57.143 0.00 4.36 44.99 5.03
2127 2926 1.542030 CAGTAAGGTGACTCTGCGAGT 59.458 52.381 10.33 10.33 46.42 4.18
2128 2927 1.542030 AGTAAGGTGACTCTGCGAGTG 59.458 52.381 14.47 0.74 43.53 3.51
2129 2928 1.269998 GTAAGGTGACTCTGCGAGTGT 59.730 52.381 14.47 3.72 43.53 3.55
2130 2929 0.032678 AAGGTGACTCTGCGAGTGTG 59.967 55.000 14.47 0.00 43.53 3.82
2131 2930 2.024319 GGTGACTCTGCGAGTGTGC 61.024 63.158 14.47 3.32 43.53 4.57
2132 2931 1.300156 GTGACTCTGCGAGTGTGCA 60.300 57.895 14.47 5.52 43.53 4.57
2133 2932 1.300156 TGACTCTGCGAGTGTGCAC 60.300 57.895 10.75 10.75 43.53 4.57
2134 2933 2.355126 ACTCTGCGAGTGTGCACG 60.355 61.111 13.13 0.46 41.76 5.34
2135 2934 2.355126 CTCTGCGAGTGTGCACGT 60.355 61.111 13.13 0.97 40.62 4.49
2136 2935 1.081442 CTCTGCGAGTGTGCACGTA 60.081 57.895 13.13 0.00 40.62 3.57
2137 2936 1.067743 CTCTGCGAGTGTGCACGTAG 61.068 60.000 13.13 9.24 40.62 3.51
2138 2937 2.049526 TGCGAGTGTGCACGTAGG 60.050 61.111 13.13 2.83 40.62 3.18
2139 2938 2.049433 GCGAGTGTGCACGTAGGT 60.049 61.111 13.13 0.00 36.20 3.08
2149 2948 2.285069 ACGTAGGTGATGGGGGCA 60.285 61.111 0.00 0.00 0.00 5.36
2150 2949 1.921346 ACGTAGGTGATGGGGGCAA 60.921 57.895 0.00 0.00 0.00 4.52
2151 2950 1.451387 CGTAGGTGATGGGGGCAAC 60.451 63.158 0.00 0.00 0.00 4.17
2152 2951 1.451387 GTAGGTGATGGGGGCAACG 60.451 63.158 0.00 0.00 37.60 4.10
2153 2952 2.675242 TAGGTGATGGGGGCAACGG 61.675 63.158 0.00 0.00 37.60 4.44
2154 2953 4.041762 GGTGATGGGGGCAACGGA 62.042 66.667 0.00 0.00 37.60 4.69
2155 2954 2.750237 GTGATGGGGGCAACGGAC 60.750 66.667 0.00 0.00 37.60 4.79
2156 2955 4.041762 TGATGGGGGCAACGGACC 62.042 66.667 0.00 0.00 43.93 4.46
2162 2961 4.947147 GGGCAACGGACCACAGCA 62.947 66.667 0.00 0.00 44.16 4.41
2163 2962 3.660111 GGCAACGGACCACAGCAC 61.660 66.667 0.00 0.00 0.00 4.40
2164 2963 2.591715 GCAACGGACCACAGCACT 60.592 61.111 0.00 0.00 0.00 4.40
2165 2964 2.607892 GCAACGGACCACAGCACTC 61.608 63.158 0.00 0.00 0.00 3.51
2166 2965 1.069765 CAACGGACCACAGCACTCT 59.930 57.895 0.00 0.00 0.00 3.24
2167 2966 0.532862 CAACGGACCACAGCACTCTT 60.533 55.000 0.00 0.00 0.00 2.85
2168 2967 0.249911 AACGGACCACAGCACTCTTC 60.250 55.000 0.00 0.00 0.00 2.87
2169 2968 1.115930 ACGGACCACAGCACTCTTCT 61.116 55.000 0.00 0.00 0.00 2.85
2170 2969 0.668706 CGGACCACAGCACTCTTCTG 60.669 60.000 0.00 0.00 37.56 3.02
2171 2970 0.952984 GGACCACAGCACTCTTCTGC 60.953 60.000 0.00 0.00 37.44 4.26
2185 2984 5.295292 CACTCTTCTGCTGTGAAAGAGAAAA 59.705 40.000 20.37 0.00 33.95 2.29
2186 2985 5.526846 ACTCTTCTGCTGTGAAAGAGAAAAG 59.473 40.000 20.37 3.58 31.75 2.27
2191 2990 3.443329 TGCTGTGAAAGAGAAAAGTGCAA 59.557 39.130 0.00 0.00 0.00 4.08
2192 2991 4.082300 TGCTGTGAAAGAGAAAAGTGCAAA 60.082 37.500 0.00 0.00 0.00 3.68
2193 2992 5.045872 GCTGTGAAAGAGAAAAGTGCAAAT 58.954 37.500 0.00 0.00 0.00 2.32
2194 2993 5.521372 GCTGTGAAAGAGAAAAGTGCAAATT 59.479 36.000 0.00 0.00 0.00 1.82
2196 2995 7.306225 GCTGTGAAAGAGAAAAGTGCAAATTAC 60.306 37.037 0.00 0.00 0.00 1.89
2197 2996 6.978080 TGTGAAAGAGAAAAGTGCAAATTACC 59.022 34.615 0.00 0.00 0.00 2.85
2198 2997 6.978080 GTGAAAGAGAAAAGTGCAAATTACCA 59.022 34.615 0.00 0.00 0.00 3.25
2199 2998 6.978080 TGAAAGAGAAAAGTGCAAATTACCAC 59.022 34.615 0.00 1.28 0.00 4.16
2201 3000 6.076981 AGAGAAAAGTGCAAATTACCACAG 57.923 37.500 10.05 0.00 34.48 3.66
2202 3001 4.620982 AGAAAAGTGCAAATTACCACAGC 58.379 39.130 10.05 0.00 34.48 4.40
2207 3006 2.580962 TGCAAATTACCACAGCACTCA 58.419 42.857 0.00 0.00 0.00 3.41
2209 3008 3.191162 TGCAAATTACCACAGCACTCATC 59.809 43.478 0.00 0.00 0.00 2.92
2210 3009 3.428045 GCAAATTACCACAGCACTCATCC 60.428 47.826 0.00 0.00 0.00 3.51
2211 3010 4.012374 CAAATTACCACAGCACTCATCCT 58.988 43.478 0.00 0.00 0.00 3.24
2212 3011 2.768253 TTACCACAGCACTCATCCTG 57.232 50.000 0.00 0.00 35.26 3.86
2217 3016 0.959372 ACAGCACTCATCCTGCTTGC 60.959 55.000 0.00 0.00 42.54 4.01
2218 3017 0.958876 CAGCACTCATCCTGCTTGCA 60.959 55.000 0.00 0.00 42.54 4.08
2219 3018 0.034380 AGCACTCATCCTGCTTGCAT 60.034 50.000 0.00 0.00 42.54 3.96
2220 3019 0.100682 GCACTCATCCTGCTTGCATG 59.899 55.000 0.00 0.00 33.24 4.06
2234 3033 4.749323 CATGGAAGGCAAGCTGGA 57.251 55.556 0.00 0.00 0.00 3.86
2235 3034 2.965805 CATGGAAGGCAAGCTGGAA 58.034 52.632 0.00 0.00 0.00 3.53
2237 3036 1.619827 CATGGAAGGCAAGCTGGAAAA 59.380 47.619 0.00 0.00 0.00 2.29
2238 3037 1.331214 TGGAAGGCAAGCTGGAAAAG 58.669 50.000 0.00 0.00 0.00 2.27
2239 3038 0.605083 GGAAGGCAAGCTGGAAAAGG 59.395 55.000 0.00 0.00 0.00 3.11
2240 3039 0.037882 GAAGGCAAGCTGGAAAAGGC 60.038 55.000 0.00 0.00 0.00 4.35
2241 3040 0.760189 AAGGCAAGCTGGAAAAGGCA 60.760 50.000 0.00 0.00 0.00 4.75
2242 3041 1.005748 GGCAAGCTGGAAAAGGCAC 60.006 57.895 0.00 0.00 0.00 5.01
2244 3043 0.038801 GCAAGCTGGAAAAGGCACTC 60.039 55.000 0.00 0.00 38.49 3.51
2245 3044 1.321474 CAAGCTGGAAAAGGCACTCA 58.679 50.000 0.00 0.00 38.49 3.41
2246 3045 1.268899 CAAGCTGGAAAAGGCACTCAG 59.731 52.381 0.00 0.00 38.49 3.35
2247 3046 0.767375 AGCTGGAAAAGGCACTCAGA 59.233 50.000 0.00 0.00 38.49 3.27
2248 3047 1.143684 AGCTGGAAAAGGCACTCAGAA 59.856 47.619 0.00 0.00 38.49 3.02
2249 3048 1.956477 GCTGGAAAAGGCACTCAGAAA 59.044 47.619 0.00 0.00 38.49 2.52
2251 3050 3.796844 GCTGGAAAAGGCACTCAGAAAAC 60.797 47.826 0.00 0.00 38.49 2.43
2252 3051 2.693074 TGGAAAAGGCACTCAGAAAACC 59.307 45.455 0.00 0.00 38.49 3.27
2253 3052 2.035961 GGAAAAGGCACTCAGAAAACCC 59.964 50.000 0.00 0.00 38.49 4.11
2291 3191 6.070596 TGCGTCTAGGATTATTGGATGATGAT 60.071 38.462 0.00 0.00 0.00 2.45
2353 3253 1.757682 ATTGGGCGCGAAAATCCTAA 58.242 45.000 12.10 5.49 0.00 2.69
2370 3270 2.872858 CCTAATCCTACGGAAGCTTTGC 59.127 50.000 0.00 0.00 34.34 3.68
2400 3301 4.597507 ACTAACCTCCCACAATTTCAGAGA 59.402 41.667 0.00 0.00 0.00 3.10
2462 3404 3.701542 TCTGCAGAAGTCATCCGTAGATT 59.298 43.478 15.67 0.00 0.00 2.40
2498 3440 8.599792 TCCCAGCAGTTACTACTTTATTTTAGT 58.400 33.333 0.00 0.00 30.26 2.24
2500 3442 9.216117 CCAGCAGTTACTACTTTATTTTAGTGT 57.784 33.333 0.00 0.00 30.26 3.55
2540 3484 4.864916 ACTTAATGTGCAATGCTAGACG 57.135 40.909 6.82 0.00 0.00 4.18
2546 3490 2.162008 TGTGCAATGCTAGACGTACGTA 59.838 45.455 22.87 5.45 0.00 3.57
2558 3502 9.949174 TGCTAGACGTACGTAAATATATTTTGA 57.051 29.630 22.87 0.00 0.00 2.69
2620 3565 1.846439 CTAAGGGGAGGAAGCCATGAA 59.154 52.381 0.00 0.00 0.00 2.57
2634 3579 2.412847 GCCATGAAAGTTCTGCACGTAC 60.413 50.000 0.00 0.00 0.00 3.67
2635 3580 2.805671 CCATGAAAGTTCTGCACGTACA 59.194 45.455 0.00 0.00 0.00 2.90
2636 3581 3.436704 CCATGAAAGTTCTGCACGTACAT 59.563 43.478 0.00 0.00 0.00 2.29
2637 3582 4.629634 CCATGAAAGTTCTGCACGTACATA 59.370 41.667 0.00 0.00 0.00 2.29
2638 3583 5.445939 CCATGAAAGTTCTGCACGTACATAC 60.446 44.000 0.00 0.00 0.00 2.39
2686 3661 3.306780 GGCATGTACTCAGTGTTAGTGGT 60.307 47.826 0.00 0.00 0.00 4.16
2700 3675 1.680338 AGTGGTGTTCTTGAAGGTGC 58.320 50.000 0.00 0.00 0.00 5.01
2724 3708 0.462581 ATACGTACGAGTCGGCTCCA 60.463 55.000 24.41 0.00 38.49 3.86
2732 3716 0.179169 GAGTCGGCTCCAACGTAGTC 60.179 60.000 5.50 0.00 36.01 2.59
2894 3896 5.508200 TGAGTGTTGTGGTAATTTTCACC 57.492 39.130 7.94 0.00 36.54 4.02
2909 3911 9.143631 GTAATTTTCACCTTTCCATCTTTGATG 57.856 33.333 0.92 0.92 0.00 3.07
2938 3940 2.048603 GCTGTTGTCCCATGCTCCC 61.049 63.158 0.00 0.00 0.00 4.30
2944 3946 1.206811 TGTCCCATGCTCCCATCACA 61.207 55.000 0.00 0.00 0.00 3.58
2945 3947 0.184451 GTCCCATGCTCCCATCACAT 59.816 55.000 0.00 0.00 0.00 3.21
2946 3948 1.421268 GTCCCATGCTCCCATCACATA 59.579 52.381 0.00 0.00 0.00 2.29
2947 3949 1.421268 TCCCATGCTCCCATCACATAC 59.579 52.381 0.00 0.00 0.00 2.39
3168 4201 9.664332 CCTTCCCTCTCTAATGATGTATAATTG 57.336 37.037 0.00 0.00 0.00 2.32
3740 4777 5.688814 AGTTTACCTAGGTGTGGGATTAC 57.311 43.478 25.33 9.87 0.00 1.89
3776 4813 0.179163 GGTACAATGAAAGCGCTGGC 60.179 55.000 12.58 6.77 40.37 4.85
3947 4984 4.635833 TGATGATGTTATGCGCAACATT 57.364 36.364 24.37 12.78 46.53 2.71
4009 5046 1.377202 CTGTCCCCATGAACACCGG 60.377 63.158 0.00 0.00 0.00 5.28
4068 5105 7.039714 ACAAATCAGGGAAAAGACCAATAGAAC 60.040 37.037 0.00 0.00 0.00 3.01
4132 5169 1.630369 TGGGATCAAGTTCCACTGGAG 59.370 52.381 0.00 0.00 37.53 3.86
4431 6063 4.122149 CCAATGCCCCGCCTACCA 62.122 66.667 0.00 0.00 0.00 3.25
4432 6064 2.044451 CAATGCCCCGCCTACCAA 60.044 61.111 0.00 0.00 0.00 3.67
4435 6067 0.325203 AATGCCCCGCCTACCAAATT 60.325 50.000 0.00 0.00 0.00 1.82
4528 6538 0.814457 CTGCTCCTCTTCTGCGTAGT 59.186 55.000 0.00 0.00 0.00 2.73
4548 6559 1.294780 CTCCGCCTGTTCTCTGCTT 59.705 57.895 0.00 0.00 0.00 3.91
4555 6566 2.434428 CCTGTTCTCTGCTTTGCTGAT 58.566 47.619 0.00 0.00 36.06 2.90
4600 6611 5.413833 CCTTGGATCTGGACAATATACATGC 59.586 44.000 0.00 0.00 0.00 4.06
4628 6644 1.909700 TGTTCCCTTGTTGGATCTGC 58.090 50.000 0.00 0.00 38.35 4.26
4777 6793 4.082523 CCTGGTGATCGTGGCGGT 62.083 66.667 0.00 0.00 0.00 5.68
4871 6891 0.251297 TGTCCCCTGCATCAAACTGG 60.251 55.000 0.00 0.00 0.00 4.00
4943 6963 0.741927 TGAGCATCTGTGGCATCGTG 60.742 55.000 0.00 0.00 34.92 4.35
4974 7008 3.315470 CCTCGGATTCGTGTAGATCTTCA 59.685 47.826 0.00 0.00 37.69 3.02
4984 7018 4.202060 CGTGTAGATCTTCATGCACCTACT 60.202 45.833 0.00 0.00 0.00 2.57
4987 7310 6.039941 GTGTAGATCTTCATGCACCTACTAGT 59.960 42.308 0.00 0.00 0.00 2.57
4990 7313 5.837979 AGATCTTCATGCACCTACTAGTGAT 59.162 40.000 5.39 0.00 40.34 3.06
4993 7316 4.655762 TCATGCACCTACTAGTGATCAC 57.344 45.455 18.47 18.47 40.34 3.06
4994 7317 3.066760 TCATGCACCTACTAGTGATCACG 59.933 47.826 19.85 9.54 40.34 4.35
4997 7320 2.651455 CACCTACTAGTGATCACGGGA 58.349 52.381 19.85 12.53 40.34 5.14
5004 7327 2.038813 TGATCACGGGAGCAGGGA 59.961 61.111 0.00 0.00 33.81 4.20
5011 7334 2.771762 GGGAGCAGGGAGGCTGAT 60.772 66.667 0.00 0.00 45.99 2.90
5012 7335 2.509916 GGAGCAGGGAGGCTGATG 59.490 66.667 0.00 0.00 45.99 3.07
5013 7336 2.509916 GAGCAGGGAGGCTGATGG 59.490 66.667 0.00 0.00 45.99 3.51
5015 7338 4.201122 GCAGGGAGGCTGATGGGG 62.201 72.222 0.00 0.00 0.00 4.96
5016 7339 4.201122 CAGGGAGGCTGATGGGGC 62.201 72.222 0.00 0.00 0.00 5.80
5017 7340 4.444957 AGGGAGGCTGATGGGGCT 62.445 66.667 0.00 0.00 44.87 5.19
5022 7345 4.247380 GGCTGATGGGGCTCGAGG 62.247 72.222 15.58 0.00 0.00 4.63
5023 7346 3.157252 GCTGATGGGGCTCGAGGA 61.157 66.667 15.58 0.00 0.00 3.71
5024 7347 2.515071 GCTGATGGGGCTCGAGGAT 61.515 63.158 15.58 0.00 0.00 3.24
5025 7348 1.188219 GCTGATGGGGCTCGAGGATA 61.188 60.000 15.58 0.00 0.00 2.59
5063 7386 5.532779 TGTGTTCCACATGTAAATAGTTGCA 59.467 36.000 0.00 0.00 39.62 4.08
5081 7404 1.002900 GCAAAACGCTAAGTCAGTGCA 60.003 47.619 0.00 0.00 38.41 4.57
5195 7530 7.721399 AGTTGAGTGTTGAATCCTAAATTGAGT 59.279 33.333 0.00 0.00 0.00 3.41
5205 7540 6.594788 ATCCTAAATTGAGTGTTGCAATGT 57.405 33.333 0.59 0.00 36.20 2.71
5249 7584 1.598130 GCATACCATGGACGGAGGC 60.598 63.158 21.47 10.03 0.00 4.70
5380 7715 6.621596 GCACAAATAGGTCACATGTCTTTCTC 60.622 42.308 0.00 0.00 0.00 2.87
5423 7758 4.445452 AGCAATGCGAGATGAAAATTGT 57.555 36.364 0.00 0.00 32.15 2.71
5424 7759 4.813027 AGCAATGCGAGATGAAAATTGTT 58.187 34.783 0.00 0.00 32.15 2.83
5429 7764 3.567585 TGCGAGATGAAAATTGTTGTGGA 59.432 39.130 0.00 0.00 0.00 4.02
5433 7768 5.617751 CGAGATGAAAATTGTTGTGGAGGAC 60.618 44.000 0.00 0.00 0.00 3.85
5456 7791 4.220693 TGGAGGAACCAATGACATACAG 57.779 45.455 0.00 0.00 46.75 2.74
5522 7857 3.627395 ATGTTCGAGCTTGGTTGGATA 57.373 42.857 0.00 0.00 0.00 2.59
5538 7873 8.220755 TGGTTGGATAAGCACAATTAGATTAC 57.779 34.615 0.00 0.00 39.22 1.89
5711 8046 4.776435 TCATTCATAGCACATTGAGGGA 57.224 40.909 0.00 0.00 0.00 4.20
5771 12385 7.715265 TTCAACATTTGTCTCTAACTCACTC 57.285 36.000 0.00 0.00 0.00 3.51
5840 12454 7.075121 TGAACACTAACGTTTTGCTATGATTG 58.925 34.615 5.91 0.00 0.00 2.67
5999 12616 1.195900 GTCAAGGCGCATGTTTACGAA 59.804 47.619 10.83 0.00 0.00 3.85
6118 12737 5.836821 TTCGACAATGCAGACTATACTCT 57.163 39.130 0.00 0.00 0.00 3.24
6231 12850 5.634118 TGATGTTCCTTCAATCTGAAACCT 58.366 37.500 0.00 0.00 35.73 3.50
6379 13399 1.470996 GGCTTTCAACCATGCCCACA 61.471 55.000 0.00 0.00 39.49 4.17
6582 13602 0.116342 TGTGGAGGTGCTCTTAGGGA 59.884 55.000 0.00 0.00 0.00 4.20
6625 13645 6.488769 AATGGTCACGGTTATACTAATGGA 57.511 37.500 0.00 0.00 0.00 3.41
6650 13670 3.072330 TGGTGCTCATGTTGGAGTTCTAA 59.928 43.478 0.00 0.00 37.24 2.10
6697 13717 3.177600 CCGTCCAATCTTGCACGG 58.822 61.111 10.74 10.74 45.38 4.94
6739 13759 5.122239 GCCCACTTTGAATTTATTTCCAAGC 59.878 40.000 2.08 0.00 39.54 4.01
6765 13785 2.815503 CGATGCTTGCCATGGATAATCA 59.184 45.455 18.40 11.73 33.29 2.57
6788 13808 3.864789 ACCATATAAGGCAACAGGAGG 57.135 47.619 0.00 0.00 41.41 4.30
6966 13986 2.754552 TGAAGAATGCTGTAACCATGGC 59.245 45.455 13.04 0.00 0.00 4.40
7068 14088 1.885163 GCAATGCAGCTTCAAGGCCT 61.885 55.000 0.00 0.00 0.00 5.19
7089 14109 1.065401 CGGCAGTGAGTTTTTCAGCAA 59.935 47.619 0.00 0.00 36.21 3.91
7253 14273 6.815142 GCCTGCATTTTTCTATTTCATTGTCT 59.185 34.615 0.00 0.00 0.00 3.41
7402 14422 5.276270 GTGTGGCTGCATACATTTTATCTG 58.724 41.667 11.26 0.00 0.00 2.90
7452 14472 2.292569 CAGTTGCAGCTCATGTCTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
7470 14490 7.662669 TGTCTTTGTGAAGATCATCATTTCTGA 59.337 33.333 3.62 0.00 43.41 3.27
7577 14599 0.179094 TTTTCGTGCTCACCGTCAGT 60.179 50.000 0.00 0.00 0.00 3.41
7603 14625 4.462483 TGTTAAAGGCAAAGCATCTTAGGG 59.538 41.667 0.00 0.00 0.00 3.53
7653 14676 9.325150 ACGATGTTCGAAACAAGTAAAATATTG 57.675 29.630 0.00 0.00 45.86 1.90
7709 14732 9.822727 TCACTTGGGATTATGTATCTACTCATA 57.177 33.333 0.00 0.00 33.53 2.15
7716 14739 9.776158 GGATTATGTATCTACTCATAGAACACG 57.224 37.037 0.00 0.00 40.88 4.49
7844 14867 8.319146 GCTACCTATTATATTACAGCCTTCCAA 58.681 37.037 0.00 0.00 0.00 3.53
7876 14899 7.969690 TGCAGGAAAATATTTGATAAAGGGA 57.030 32.000 0.39 0.00 0.00 4.20
7877 14900 8.551682 TGCAGGAAAATATTTGATAAAGGGAT 57.448 30.769 0.39 0.00 0.00 3.85
7921 14944 6.616947 CCAAAGTTGAACATTTATTCGCCTA 58.383 36.000 0.00 0.00 0.00 3.93
7940 14963 6.552350 TCGCCTAGACTAATACTTTGGGTTAT 59.448 38.462 0.00 0.00 0.00 1.89
8010 15033 6.147492 CCTCTTTCTCATAATGATGCTAGCAC 59.853 42.308 22.07 14.47 32.62 4.40
8062 15097 1.078988 GGCACATGCACAAATGGGG 60.079 57.895 6.15 0.00 44.36 4.96
8179 15214 1.203441 AAGGCATGGAGGAGCTCACA 61.203 55.000 17.19 11.61 31.08 3.58
8343 15383 5.580691 TGTGAACTGAGCTAAACCGATAATG 59.419 40.000 0.00 0.00 0.00 1.90
8492 15545 2.509336 CCGTGCTAGTTCTGCGGG 60.509 66.667 0.00 0.00 38.86 6.13
8517 15597 1.476891 GAACATGTCGACCTGGAGCTA 59.523 52.381 22.34 0.00 0.00 3.32
8549 15629 2.257409 CTGCTGGTCGCCTTGGGTAT 62.257 60.000 0.00 0.00 38.05 2.73
8550 15630 1.819632 GCTGGTCGCCTTGGGTATG 60.820 63.158 0.00 0.00 0.00 2.39
8557 15637 1.754234 GCCTTGGGTATGGCACTGG 60.754 63.158 0.00 0.00 44.36 4.00
8572 15652 1.278985 CACTGGCATGAACTACCCTGA 59.721 52.381 0.00 0.00 0.00 3.86
8576 15656 1.541233 GGCATGAACTACCCTGATCCG 60.541 57.143 0.00 0.00 0.00 4.18
8626 15707 2.117206 GCCCCCATGGTGAACACA 59.883 61.111 11.73 0.00 36.04 3.72
8627 15708 2.275380 GCCCCCATGGTGAACACAC 61.275 63.158 11.73 0.00 36.04 3.82
8628 15709 1.152599 CCCCCATGGTGAACACACA 59.847 57.895 11.73 3.47 36.39 3.72
8629 15710 0.468958 CCCCCATGGTGAACACACAA 60.469 55.000 11.73 0.00 36.39 3.33
8630 15711 0.673437 CCCCATGGTGAACACACAAC 59.327 55.000 11.73 0.00 36.39 3.32
8632 15713 1.337703 CCCATGGTGAACACACAACTG 59.662 52.381 11.73 0.53 36.39 3.16
8633 15714 2.023673 CCATGGTGAACACACAACTGT 58.976 47.619 2.57 0.00 36.39 3.55
8639 15720 4.754618 TGGTGAACACACAACTGTATGATC 59.245 41.667 7.25 0.00 36.39 2.92
8735 15839 5.070047 CACCTAAAATCACCCGTCTACCTAT 59.930 44.000 0.00 0.00 0.00 2.57
8738 15842 7.015001 ACCTAAAATCACCCGTCTACCTATTAG 59.985 40.741 0.00 0.00 0.00 1.73
8739 15843 4.868314 AATCACCCGTCTACCTATTAGC 57.132 45.455 0.00 0.00 0.00 3.09
8740 15844 3.589951 TCACCCGTCTACCTATTAGCT 57.410 47.619 0.00 0.00 0.00 3.32
8741 15845 4.712051 TCACCCGTCTACCTATTAGCTA 57.288 45.455 0.00 0.00 0.00 3.32
8742 15846 4.392940 TCACCCGTCTACCTATTAGCTAC 58.607 47.826 0.00 0.00 0.00 3.58
8743 15847 4.103785 TCACCCGTCTACCTATTAGCTACT 59.896 45.833 0.00 0.00 0.00 2.57
8744 15848 4.215827 CACCCGTCTACCTATTAGCTACTG 59.784 50.000 0.00 0.00 0.00 2.74
8851 15955 1.810532 GAGCCTCCAGACGACGAAT 59.189 57.895 0.00 0.00 0.00 3.34
8942 16046 2.057503 AGATCATCGTCGCACTATGC 57.942 50.000 0.00 0.00 40.69 3.14
8983 16087 1.974028 TAGGCCAGTTAACCCATGGA 58.026 50.000 15.22 0.00 36.09 3.41
9016 16120 3.399181 CTAGCGTCCTTGGGGCCA 61.399 66.667 4.39 0.00 0.00 5.36
9026 16130 0.395724 CTTGGGGCCACCTGATTACC 60.396 60.000 0.20 0.00 41.11 2.85
9027 16131 1.143329 TTGGGGCCACCTGATTACCA 61.143 55.000 0.20 0.00 41.11 3.25
9034 16138 1.463674 CACCTGATTACCACAAGCCC 58.536 55.000 0.00 0.00 0.00 5.19
9105 16209 3.008049 ACCGCTGGAAGATTCTTGTAAGT 59.992 43.478 3.03 0.00 34.07 2.24
9162 16266 8.347035 TGTAAACTTTTGACCTACAAAGTATGC 58.653 33.333 0.00 0.00 46.93 3.14
9188 16292 3.125316 GTGCTTCATTTCAGTCTTACGGG 59.875 47.826 0.00 0.00 0.00 5.28
9190 16294 3.619038 GCTTCATTTCAGTCTTACGGGAG 59.381 47.826 0.00 0.00 0.00 4.30
9192 16296 4.188247 TCATTTCAGTCTTACGGGAGTG 57.812 45.455 0.00 0.00 46.80 3.51
9193 16297 3.830178 TCATTTCAGTCTTACGGGAGTGA 59.170 43.478 8.17 8.17 46.80 3.41
9219 16323 1.832998 TGATGAGGTATGTGAGCAGCA 59.167 47.619 0.00 0.00 0.00 4.41
9225 16329 2.238144 AGGTATGTGAGCAGCAGTTGAT 59.762 45.455 0.00 0.00 0.00 2.57
9273 16377 1.819288 CCTCCGAGCTGTGTTCTTCTA 59.181 52.381 0.00 0.00 0.00 2.10
9295 16399 3.870419 ACAATTTCATGTGTGTTTGCCAC 59.130 39.130 0.00 0.00 44.78 5.01
9319 16423 3.181469 GCCTTCGTACCATCATAGGTTGA 60.181 47.826 0.00 0.00 43.08 3.18
9365 16469 4.974368 TTTCGTTGATGGTTTGTGAAGT 57.026 36.364 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.202452 TCGTGCATGCATCTCCTAGTG 60.202 52.381 25.64 5.69 0.00 2.74
3 4 1.114627 TCGTGCATGCATCTCCTAGT 58.885 50.000 25.64 0.00 0.00 2.57
4 5 2.229675 TTCGTGCATGCATCTCCTAG 57.770 50.000 25.64 9.50 0.00 3.02
5 6 2.279741 GTTTCGTGCATGCATCTCCTA 58.720 47.619 25.64 4.89 0.00 2.94
6 7 1.089920 GTTTCGTGCATGCATCTCCT 58.910 50.000 25.64 0.00 0.00 3.69
7 8 0.804364 TGTTTCGTGCATGCATCTCC 59.196 50.000 25.64 9.96 0.00 3.71
8 9 2.447250 CATGTTTCGTGCATGCATCTC 58.553 47.619 25.64 10.37 37.50 2.75
9 10 1.133598 CCATGTTTCGTGCATGCATCT 59.866 47.619 25.64 0.78 41.56 2.90
10 11 1.135315 ACCATGTTTCGTGCATGCATC 60.135 47.619 25.64 16.09 41.56 3.91
42 44 5.067674 GCAATCCTAACTATGTTTGATGCCA 59.932 40.000 0.00 0.00 0.00 4.92
88 98 8.965819 GCATGAGATCTAGGATTCAGAGTATAA 58.034 37.037 0.00 0.00 0.00 0.98
126 136 7.725397 ACTCATCAGGCCTAAAATAATTATGCA 59.275 33.333 3.98 0.00 0.00 3.96
127 137 8.115490 ACTCATCAGGCCTAAAATAATTATGC 57.885 34.615 3.98 0.00 0.00 3.14
135 145 9.289782 GTAATTGATACTCATCAGGCCTAAAAT 57.710 33.333 3.98 0.00 42.11 1.82
137 147 7.147391 TGGTAATTGATACTCATCAGGCCTAAA 60.147 37.037 3.98 0.00 42.11 1.85
138 148 6.328934 TGGTAATTGATACTCATCAGGCCTAA 59.671 38.462 3.98 0.00 42.11 2.69
170 180 8.879759 CATCATTCTTCCCATGAAATTTTGAAG 58.120 33.333 0.00 1.38 34.31 3.02
184 195 2.760374 CTAGCCGTCATCATTCTTCCC 58.240 52.381 0.00 0.00 0.00 3.97
186 197 2.826428 TGCTAGCCGTCATCATTCTTC 58.174 47.619 13.29 0.00 0.00 2.87
214 225 2.149973 ATGGGCATTCCTTGGAGAAC 57.850 50.000 0.00 0.00 36.20 3.01
257 268 0.394762 GCCATGTCCATGCCTTGAGA 60.395 55.000 1.64 0.00 37.49 3.27
300 311 1.617357 AGTTACAACTCCACTCCGGAC 59.383 52.381 0.00 0.00 39.64 4.79
353 367 7.515586 TCATAGAGAGGCAATCTTCAATCAAT 58.484 34.615 0.00 0.00 38.84 2.57
364 378 7.971201 TCATAGTTTCATCATAGAGAGGCAAT 58.029 34.615 0.00 0.00 0.00 3.56
448 1033 0.951558 ACTTGTAAGGGCGTTTGCAG 59.048 50.000 0.00 0.00 45.35 4.41
606 1313 0.976641 TCACGAATCCTCAAGGTGCT 59.023 50.000 0.00 0.00 36.34 4.40
612 1319 2.224281 ACTTGCAGTCACGAATCCTCAA 60.224 45.455 0.00 0.00 0.00 3.02
624 1331 6.539649 TGAAACATACAACTACTTGCAGTC 57.460 37.500 0.00 0.00 0.00 3.51
659 1366 5.423610 TCTTGTTTGTTTTTCTTCCCCATGA 59.576 36.000 0.00 0.00 0.00 3.07
664 1371 5.348986 GGTCTCTTGTTTGTTTTTCTTCCC 58.651 41.667 0.00 0.00 0.00 3.97
987 1699 5.394224 GCATTCAGTAACTGGTGACTAGCTA 60.394 44.000 0.00 0.00 31.51 3.32
1009 1723 0.616395 TCCGTAATGAGTGGAGGGCA 60.616 55.000 0.00 0.00 0.00 5.36
1110 1837 0.043637 AACGAGGACCCTAATCCCCA 59.956 55.000 0.00 0.00 39.91 4.96
1198 1925 1.991430 CGATGACAAAGCGGACGAG 59.009 57.895 0.00 0.00 0.00 4.18
1457 2229 7.397192 TCCATGGATTGATCGATCTATTCTGTA 59.603 37.037 25.02 7.85 0.00 2.74
1512 2285 0.524862 GCCAACTCAGAACATGCCTG 59.475 55.000 8.88 8.88 0.00 4.85
1521 2294 0.607217 TACGTCGGAGCCAACTCAGA 60.607 55.000 0.00 0.00 45.42 3.27
1522 2295 0.179161 CTACGTCGGAGCCAACTCAG 60.179 60.000 0.00 0.00 45.42 3.35
1524 2297 0.243095 AACTACGTCGGAGCCAACTC 59.757 55.000 3.79 0.00 42.66 3.01
1525 2298 0.243095 GAACTACGTCGGAGCCAACT 59.757 55.000 3.79 0.00 0.00 3.16
1526 2299 0.735287 GGAACTACGTCGGAGCCAAC 60.735 60.000 3.79 0.00 0.00 3.77
1527 2300 1.180456 TGGAACTACGTCGGAGCCAA 61.180 55.000 3.79 0.00 0.00 4.52
1528 2301 1.604308 TGGAACTACGTCGGAGCCA 60.604 57.895 3.79 1.64 0.00 4.75
1530 2303 1.153881 GGTGGAACTACGTCGGAGC 60.154 63.158 3.79 0.00 36.74 4.70
1534 2307 2.589014 GTTACTGGTGGAACTACGTCG 58.411 52.381 0.00 0.00 36.74 5.12
1536 2309 1.270550 CCGTTACTGGTGGAACTACGT 59.729 52.381 0.00 0.00 36.74 3.57
1547 2326 4.062991 AGAAAAACTACAGCCGTTACTGG 58.937 43.478 0.00 0.00 42.21 4.00
1549 2328 5.608449 AGAAGAAAAACTACAGCCGTTACT 58.392 37.500 0.00 0.00 0.00 2.24
1553 2332 5.124936 ACAAAAGAAGAAAAACTACAGCCGT 59.875 36.000 0.00 0.00 0.00 5.68
1554 2333 5.578776 ACAAAAGAAGAAAAACTACAGCCG 58.421 37.500 0.00 0.00 0.00 5.52
1555 2334 7.827819 AAACAAAAGAAGAAAAACTACAGCC 57.172 32.000 0.00 0.00 0.00 4.85
1657 2454 1.078848 GCCAGCTGGGTACTCACTG 60.079 63.158 33.46 14.75 39.65 3.66
1683 2480 3.326747 CAGTGGTGTAGAAGTTGCTACC 58.673 50.000 0.00 0.00 39.96 3.18
1687 2484 0.875059 GGCAGTGGTGTAGAAGTTGC 59.125 55.000 0.00 0.00 0.00 4.17
1691 2488 0.108615 CCTCGGCAGTGGTGTAGAAG 60.109 60.000 0.00 0.00 0.00 2.85
1799 2596 5.431765 TCTTCTGCTGTGAAAGAGAAAAGT 58.568 37.500 0.00 0.00 0.00 2.66
1807 2604 2.492012 AGCACTCTTCTGCTGTGAAAG 58.508 47.619 0.00 0.00 46.10 2.62
1870 2669 1.005037 CCGTGTGCAGTGAGGCTTA 60.005 57.895 0.00 0.00 34.04 3.09
1877 2676 3.337889 CCGTGTCCGTGTGCAGTG 61.338 66.667 0.00 0.00 0.00 3.66
1926 2725 9.581099 GTCCATTTGAAAACTCTAAAAAGACAA 57.419 29.630 0.00 0.00 0.00 3.18
1932 2731 8.626526 GTGGTAGTCCATTTGAAAACTCTAAAA 58.373 33.333 0.00 0.00 46.20 1.52
1933 2732 7.776030 TGTGGTAGTCCATTTGAAAACTCTAAA 59.224 33.333 0.00 0.00 46.20 1.85
1934 2733 7.284074 TGTGGTAGTCCATTTGAAAACTCTAA 58.716 34.615 0.00 0.00 46.20 2.10
1936 2735 5.690865 TGTGGTAGTCCATTTGAAAACTCT 58.309 37.500 0.00 0.00 46.20 3.24
1937 2736 6.575162 ATGTGGTAGTCCATTTGAAAACTC 57.425 37.500 0.00 0.00 46.20 3.01
1938 2737 7.001674 TGTATGTGGTAGTCCATTTGAAAACT 58.998 34.615 0.00 0.00 46.20 2.66
1939 2738 7.174253 TCTGTATGTGGTAGTCCATTTGAAAAC 59.826 37.037 0.00 0.00 46.20 2.43
1941 2740 6.774673 TCTGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
1942 2741 6.367374 TCTGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
1944 2743 6.115446 ACATCTGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
1946 2745 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
1947 2746 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
1949 2748 9.682465 TCTATATACATCTGTATGTGGTAGTCC 57.318 37.037 12.10 0.00 45.99 3.85
1987 2786 5.163713 GGGAGCAAAATGAGTGAATCTACAC 60.164 44.000 0.00 0.00 40.60 2.90
1988 2787 4.943705 GGGAGCAAAATGAGTGAATCTACA 59.056 41.667 0.00 0.00 0.00 2.74
1991 2790 4.313020 AGGGAGCAAAATGAGTGAATCT 57.687 40.909 0.00 0.00 0.00 2.40
1994 2793 8.034313 ACTATATAGGGAGCAAAATGAGTGAA 57.966 34.615 14.25 0.00 0.00 3.18
1998 2797 7.601886 CAGTGACTATATAGGGAGCAAAATGAG 59.398 40.741 14.25 0.00 0.00 2.90
1999 2798 7.445121 CAGTGACTATATAGGGAGCAAAATGA 58.555 38.462 14.25 0.00 0.00 2.57
2000 2799 6.148480 GCAGTGACTATATAGGGAGCAAAATG 59.852 42.308 14.25 7.43 0.00 2.32
2020 2819 4.281617 ATCGACTTGATGATGACGCAGTG 61.282 47.826 0.00 0.00 36.91 3.66
2021 2820 2.159184 ATCGACTTGATGATGACGCAGT 60.159 45.455 0.00 0.00 39.22 4.40
2022 2821 1.913317 TCGACTTGATGATGACGCAG 58.087 50.000 0.00 0.00 0.00 5.18
2024 2823 3.633235 ACTATCGACTTGATGATGACGC 58.367 45.455 0.00 0.00 37.99 5.19
2026 2825 8.978564 ATGATAACTATCGACTTGATGATGAC 57.021 34.615 0.00 0.00 37.99 3.06
2027 2826 9.018582 AGATGATAACTATCGACTTGATGATGA 57.981 33.333 0.00 0.00 37.99 2.92
2028 2827 9.636879 AAGATGATAACTATCGACTTGATGATG 57.363 33.333 0.00 0.00 37.99 3.07
2030 2829 9.684448 GAAAGATGATAACTATCGACTTGATGA 57.316 33.333 0.00 0.00 37.99 2.92
2031 2830 9.689976 AGAAAGATGATAACTATCGACTTGATG 57.310 33.333 0.00 0.00 37.99 3.07
2033 2832 9.737427 GAAGAAAGATGATAACTATCGACTTGA 57.263 33.333 0.00 0.00 35.48 3.02
2034 2833 8.973378 GGAAGAAAGATGATAACTATCGACTTG 58.027 37.037 0.00 0.00 35.48 3.16
2035 2834 8.919145 AGGAAGAAAGATGATAACTATCGACTT 58.081 33.333 0.00 0.00 35.48 3.01
2036 2835 8.356657 CAGGAAGAAAGATGATAACTATCGACT 58.643 37.037 0.00 0.00 35.48 4.18
2037 2836 7.115663 GCAGGAAGAAAGATGATAACTATCGAC 59.884 40.741 0.00 0.00 35.48 4.20
2038 2837 7.148641 GCAGGAAGAAAGATGATAACTATCGA 58.851 38.462 0.00 0.00 35.48 3.59
2039 2838 6.925718 TGCAGGAAGAAAGATGATAACTATCG 59.074 38.462 0.00 0.00 35.48 2.92
2040 2839 8.845413 ATGCAGGAAGAAAGATGATAACTATC 57.155 34.615 0.00 0.00 0.00 2.08
2041 2840 8.658619 AGATGCAGGAAGAAAGATGATAACTAT 58.341 33.333 0.00 0.00 0.00 2.12
2042 2841 8.027524 AGATGCAGGAAGAAAGATGATAACTA 57.972 34.615 0.00 0.00 0.00 2.24
2043 2842 6.897986 AGATGCAGGAAGAAAGATGATAACT 58.102 36.000 0.00 0.00 0.00 2.24
2044 2843 7.565323 AAGATGCAGGAAGAAAGATGATAAC 57.435 36.000 0.00 0.00 0.00 1.89
2045 2844 8.051535 AGAAAGATGCAGGAAGAAAGATGATAA 58.948 33.333 0.00 0.00 0.00 1.75
2046 2845 7.571919 AGAAAGATGCAGGAAGAAAGATGATA 58.428 34.615 0.00 0.00 0.00 2.15
2047 2846 6.424883 AGAAAGATGCAGGAAGAAAGATGAT 58.575 36.000 0.00 0.00 0.00 2.45
2048 2847 5.813383 AGAAAGATGCAGGAAGAAAGATGA 58.187 37.500 0.00 0.00 0.00 2.92
2049 2848 5.881443 AGAGAAAGATGCAGGAAGAAAGATG 59.119 40.000 0.00 0.00 0.00 2.90
2050 2849 6.064735 AGAGAAAGATGCAGGAAGAAAGAT 57.935 37.500 0.00 0.00 0.00 2.40
2051 2850 5.495926 AGAGAAAGATGCAGGAAGAAAGA 57.504 39.130 0.00 0.00 0.00 2.52
2052 2851 6.572167 AAAGAGAAAGATGCAGGAAGAAAG 57.428 37.500 0.00 0.00 0.00 2.62
2053 2852 5.180117 CGAAAGAGAAAGATGCAGGAAGAAA 59.820 40.000 0.00 0.00 0.00 2.52
2054 2853 4.692625 CGAAAGAGAAAGATGCAGGAAGAA 59.307 41.667 0.00 0.00 0.00 2.52
2055 2854 4.248859 CGAAAGAGAAAGATGCAGGAAGA 58.751 43.478 0.00 0.00 0.00 2.87
2056 2855 3.373439 CCGAAAGAGAAAGATGCAGGAAG 59.627 47.826 0.00 0.00 0.00 3.46
2057 2856 3.338249 CCGAAAGAGAAAGATGCAGGAA 58.662 45.455 0.00 0.00 0.00 3.36
2058 2857 2.355108 CCCGAAAGAGAAAGATGCAGGA 60.355 50.000 0.00 0.00 0.00 3.86
2059 2858 2.012673 CCCGAAAGAGAAAGATGCAGG 58.987 52.381 0.00 0.00 0.00 4.85
2060 2859 2.675348 GTCCCGAAAGAGAAAGATGCAG 59.325 50.000 0.00 0.00 0.00 4.41
2061 2860 2.699954 GTCCCGAAAGAGAAAGATGCA 58.300 47.619 0.00 0.00 0.00 3.96
2062 2861 1.661112 CGTCCCGAAAGAGAAAGATGC 59.339 52.381 0.00 0.00 0.00 3.91
2063 2862 2.960819 ACGTCCCGAAAGAGAAAGATG 58.039 47.619 0.00 0.00 0.00 2.90
2064 2863 3.762823 AGTACGTCCCGAAAGAGAAAGAT 59.237 43.478 0.00 0.00 0.00 2.40
2065 2864 3.152341 AGTACGTCCCGAAAGAGAAAGA 58.848 45.455 0.00 0.00 0.00 2.52
2066 2865 3.572604 AGTACGTCCCGAAAGAGAAAG 57.427 47.619 0.00 0.00 0.00 2.62
2067 2866 4.074970 ACTAGTACGTCCCGAAAGAGAAA 58.925 43.478 0.00 0.00 0.00 2.52
2068 2867 3.679389 ACTAGTACGTCCCGAAAGAGAA 58.321 45.455 0.00 0.00 0.00 2.87
2069 2868 3.340814 ACTAGTACGTCCCGAAAGAGA 57.659 47.619 0.00 0.00 0.00 3.10
2070 2869 4.431661 AAACTAGTACGTCCCGAAAGAG 57.568 45.455 0.00 0.00 0.00 2.85
2071 2870 4.142600 GCTAAACTAGTACGTCCCGAAAGA 60.143 45.833 0.00 0.00 0.00 2.52
2072 2871 4.101235 GCTAAACTAGTACGTCCCGAAAG 58.899 47.826 0.00 0.00 0.00 2.62
2073 2872 3.119495 GGCTAAACTAGTACGTCCCGAAA 60.119 47.826 0.00 0.00 0.00 3.46
2074 2873 2.423538 GGCTAAACTAGTACGTCCCGAA 59.576 50.000 0.00 0.00 0.00 4.30
2075 2874 2.017049 GGCTAAACTAGTACGTCCCGA 58.983 52.381 0.00 0.00 0.00 5.14
2076 2875 1.268234 CGGCTAAACTAGTACGTCCCG 60.268 57.143 0.00 1.65 0.00 5.14
2077 2876 1.745653 ACGGCTAAACTAGTACGTCCC 59.254 52.381 0.00 0.00 37.07 4.46
2078 2877 2.162408 ACACGGCTAAACTAGTACGTCC 59.838 50.000 0.00 0.00 38.66 4.79
2079 2878 3.420828 GACACGGCTAAACTAGTACGTC 58.579 50.000 0.00 0.00 38.66 4.34
2080 2879 2.162408 GGACACGGCTAAACTAGTACGT 59.838 50.000 0.00 0.00 40.31 3.57
2081 2880 2.478539 GGGACACGGCTAAACTAGTACG 60.479 54.545 0.00 0.00 35.49 3.67
2082 2881 2.757314 AGGGACACGGCTAAACTAGTAC 59.243 50.000 0.00 0.00 0.00 2.73
2083 2882 2.756760 CAGGGACACGGCTAAACTAGTA 59.243 50.000 0.00 0.00 0.00 1.82
2084 2883 1.549170 CAGGGACACGGCTAAACTAGT 59.451 52.381 0.00 0.00 0.00 2.57
2085 2884 1.549170 ACAGGGACACGGCTAAACTAG 59.451 52.381 0.00 0.00 0.00 2.57
2086 2885 1.274167 CACAGGGACACGGCTAAACTA 59.726 52.381 0.00 0.00 0.00 2.24
2087 2886 0.034896 CACAGGGACACGGCTAAACT 59.965 55.000 0.00 0.00 0.00 2.66
2088 2887 1.574702 GCACAGGGACACGGCTAAAC 61.575 60.000 0.00 0.00 0.00 2.01
2089 2888 1.302192 GCACAGGGACACGGCTAAA 60.302 57.895 0.00 0.00 0.00 1.85
2090 2889 2.345991 GCACAGGGACACGGCTAA 59.654 61.111 0.00 0.00 0.00 3.09
2091 2890 2.920384 TGCACAGGGACACGGCTA 60.920 61.111 0.00 0.00 0.00 3.93
2092 2891 4.320456 CTGCACAGGGACACGGCT 62.320 66.667 0.00 0.00 0.00 5.52
2093 2892 2.725203 TTACTGCACAGGGACACGGC 62.725 60.000 2.21 0.00 0.00 5.68
2094 2893 0.670546 CTTACTGCACAGGGACACGG 60.671 60.000 2.21 0.00 0.00 4.94
2095 2894 0.670546 CCTTACTGCACAGGGACACG 60.671 60.000 2.21 0.00 0.00 4.49
2096 2895 0.396811 ACCTTACTGCACAGGGACAC 59.603 55.000 2.21 0.00 34.02 3.67
2097 2896 0.396435 CACCTTACTGCACAGGGACA 59.604 55.000 2.21 0.00 34.02 4.02
2098 2897 0.685097 TCACCTTACTGCACAGGGAC 59.315 55.000 2.21 0.00 34.02 4.46
2099 2898 0.685097 GTCACCTTACTGCACAGGGA 59.315 55.000 2.21 0.00 34.02 4.20
2100 2899 0.687354 AGTCACCTTACTGCACAGGG 59.313 55.000 2.21 0.00 34.02 4.45
2101 2900 1.620819 AGAGTCACCTTACTGCACAGG 59.379 52.381 2.21 0.97 36.10 4.00
2102 2901 2.681706 CAGAGTCACCTTACTGCACAG 58.318 52.381 0.00 0.00 0.00 3.66
2103 2902 2.820059 CAGAGTCACCTTACTGCACA 57.180 50.000 0.00 0.00 0.00 4.57
2119 2918 1.081442 CTACGTGCACACTCGCAGA 60.081 57.895 18.64 0.00 44.05 4.26
2120 2919 2.088763 CCTACGTGCACACTCGCAG 61.089 63.158 18.64 2.53 44.05 5.18
2121 2920 2.049526 CCTACGTGCACACTCGCA 60.050 61.111 18.64 0.00 40.32 5.10
2122 2921 2.049433 ACCTACGTGCACACTCGC 60.049 61.111 18.64 0.00 36.27 5.03
2123 2922 0.109272 ATCACCTACGTGCACACTCG 60.109 55.000 18.64 5.14 40.04 4.18
2124 2923 1.350193 CATCACCTACGTGCACACTC 58.650 55.000 18.64 0.00 40.04 3.51
2125 2924 0.037326 CCATCACCTACGTGCACACT 60.037 55.000 18.64 3.22 40.04 3.55
2126 2925 1.019278 CCCATCACCTACGTGCACAC 61.019 60.000 18.64 0.00 40.04 3.82
2127 2926 1.295101 CCCATCACCTACGTGCACA 59.705 57.895 18.64 0.00 40.04 4.57
2128 2927 1.449601 CCCCATCACCTACGTGCAC 60.450 63.158 6.82 6.82 40.04 4.57
2129 2928 2.665089 CCCCCATCACCTACGTGCA 61.665 63.158 0.00 0.00 40.04 4.57
2130 2929 2.189521 CCCCCATCACCTACGTGC 59.810 66.667 0.00 0.00 40.04 5.34
2131 2930 2.189521 GCCCCCATCACCTACGTG 59.810 66.667 0.00 0.00 41.72 4.49
2132 2931 1.921346 TTGCCCCCATCACCTACGT 60.921 57.895 0.00 0.00 0.00 3.57
2133 2932 1.451387 GTTGCCCCCATCACCTACG 60.451 63.158 0.00 0.00 0.00 3.51
2134 2933 1.451387 CGTTGCCCCCATCACCTAC 60.451 63.158 0.00 0.00 0.00 3.18
2135 2934 2.675242 CCGTTGCCCCCATCACCTA 61.675 63.158 0.00 0.00 0.00 3.08
2136 2935 4.047125 CCGTTGCCCCCATCACCT 62.047 66.667 0.00 0.00 0.00 4.00
2137 2936 4.041762 TCCGTTGCCCCCATCACC 62.042 66.667 0.00 0.00 0.00 4.02
2138 2937 2.750237 GTCCGTTGCCCCCATCAC 60.750 66.667 0.00 0.00 0.00 3.06
2139 2938 4.041762 GGTCCGTTGCCCCCATCA 62.042 66.667 0.00 0.00 0.00 3.07
2140 2939 4.041762 TGGTCCGTTGCCCCCATC 62.042 66.667 0.00 0.00 0.00 3.51
2141 2940 4.360405 GTGGTCCGTTGCCCCCAT 62.360 66.667 0.00 0.00 0.00 4.00
2145 2944 4.947147 TGCTGTGGTCCGTTGCCC 62.947 66.667 0.00 0.00 0.00 5.36
2146 2945 3.660111 GTGCTGTGGTCCGTTGCC 61.660 66.667 0.00 0.00 0.00 4.52
2147 2946 2.591715 AGTGCTGTGGTCCGTTGC 60.592 61.111 0.00 0.00 0.00 4.17
2148 2947 0.532862 AAGAGTGCTGTGGTCCGTTG 60.533 55.000 0.00 0.00 0.00 4.10
2149 2948 0.249911 GAAGAGTGCTGTGGTCCGTT 60.250 55.000 0.00 0.00 0.00 4.44
2150 2949 1.115930 AGAAGAGTGCTGTGGTCCGT 61.116 55.000 0.00 0.00 0.00 4.69
2151 2950 0.668706 CAGAAGAGTGCTGTGGTCCG 60.669 60.000 0.00 0.00 0.00 4.79
2152 2951 0.952984 GCAGAAGAGTGCTGTGGTCC 60.953 60.000 0.00 0.00 40.54 4.46
2153 2952 2.537863 GCAGAAGAGTGCTGTGGTC 58.462 57.895 0.00 0.00 40.54 4.02
2154 2953 4.787871 GCAGAAGAGTGCTGTGGT 57.212 55.556 0.00 0.00 40.54 4.16
2160 2959 2.479656 CTCTTTCACAGCAGAAGAGTGC 59.520 50.000 4.60 0.00 44.35 4.40
2161 2960 3.987547 TCTCTTTCACAGCAGAAGAGTG 58.012 45.455 10.93 0.00 34.67 3.51
2162 2961 4.679373 TTCTCTTTCACAGCAGAAGAGT 57.321 40.909 10.93 0.00 31.08 3.24
2163 2962 5.526846 ACTTTTCTCTTTCACAGCAGAAGAG 59.473 40.000 6.10 6.10 34.68 2.85
2164 2963 5.295292 CACTTTTCTCTTTCACAGCAGAAGA 59.705 40.000 0.00 0.00 0.00 2.87
2165 2964 5.508872 CACTTTTCTCTTTCACAGCAGAAG 58.491 41.667 0.00 0.00 0.00 2.85
2166 2965 4.201950 GCACTTTTCTCTTTCACAGCAGAA 60.202 41.667 0.00 0.00 0.00 3.02
2167 2966 3.313526 GCACTTTTCTCTTTCACAGCAGA 59.686 43.478 0.00 0.00 0.00 4.26
2168 2967 3.065786 TGCACTTTTCTCTTTCACAGCAG 59.934 43.478 0.00 0.00 0.00 4.24
2169 2968 3.016031 TGCACTTTTCTCTTTCACAGCA 58.984 40.909 0.00 0.00 0.00 4.41
2170 2969 3.698029 TGCACTTTTCTCTTTCACAGC 57.302 42.857 0.00 0.00 0.00 4.40
2171 2970 7.168135 GGTAATTTGCACTTTTCTCTTTCACAG 59.832 37.037 0.00 0.00 0.00 3.66
2172 2971 6.978080 GGTAATTTGCACTTTTCTCTTTCACA 59.022 34.615 0.00 0.00 0.00 3.58
2173 2972 6.978080 TGGTAATTTGCACTTTTCTCTTTCAC 59.022 34.615 0.00 0.00 0.00 3.18
2174 2973 6.978080 GTGGTAATTTGCACTTTTCTCTTTCA 59.022 34.615 0.00 0.00 0.00 2.69
2175 2974 6.978080 TGTGGTAATTTGCACTTTTCTCTTTC 59.022 34.615 0.00 0.00 0.00 2.62
2191 2990 3.614092 CAGGATGAGTGCTGTGGTAATT 58.386 45.455 0.00 0.00 39.69 1.40
2192 2991 2.681976 GCAGGATGAGTGCTGTGGTAAT 60.682 50.000 0.00 0.00 44.77 1.89
2193 2992 1.339055 GCAGGATGAGTGCTGTGGTAA 60.339 52.381 0.00 0.00 44.77 2.85
2194 2993 0.250234 GCAGGATGAGTGCTGTGGTA 59.750 55.000 0.00 0.00 44.77 3.25
2196 2995 3.900855 GCAGGATGAGTGCTGTGG 58.099 61.111 0.00 0.00 44.77 4.17
2201 3000 2.490165 ATGCAAGCAGGATGAGTGC 58.510 52.632 0.00 0.00 44.59 4.40
2206 3005 0.744874 CCTTCCATGCAAGCAGGATG 59.255 55.000 8.43 12.10 44.83 3.51
2207 3006 1.041447 GCCTTCCATGCAAGCAGGAT 61.041 55.000 8.43 0.00 0.00 3.24
2209 3008 1.537814 TTGCCTTCCATGCAAGCAGG 61.538 55.000 0.00 0.00 43.36 4.85
2210 3009 1.969085 TTGCCTTCCATGCAAGCAG 59.031 52.632 0.00 0.00 43.36 4.24
2211 3010 4.194660 TTGCCTTCCATGCAAGCA 57.805 50.000 0.00 0.00 43.36 3.91
2217 3016 1.259609 TTTCCAGCTTGCCTTCCATG 58.740 50.000 0.00 0.00 0.00 3.66
2218 3017 1.897802 CTTTTCCAGCTTGCCTTCCAT 59.102 47.619 0.00 0.00 0.00 3.41
2219 3018 1.331214 CTTTTCCAGCTTGCCTTCCA 58.669 50.000 0.00 0.00 0.00 3.53
2220 3019 0.605083 CCTTTTCCAGCTTGCCTTCC 59.395 55.000 0.00 0.00 0.00 3.46
2227 3026 1.143684 TCTGAGTGCCTTTTCCAGCTT 59.856 47.619 0.00 0.00 0.00 3.74
2228 3027 0.767375 TCTGAGTGCCTTTTCCAGCT 59.233 50.000 0.00 0.00 0.00 4.24
2229 3028 1.609208 TTCTGAGTGCCTTTTCCAGC 58.391 50.000 0.00 0.00 0.00 4.85
2230 3029 3.243535 GGTTTTCTGAGTGCCTTTTCCAG 60.244 47.826 0.00 0.00 0.00 3.86
2231 3030 2.693074 GGTTTTCTGAGTGCCTTTTCCA 59.307 45.455 0.00 0.00 0.00 3.53
2232 3031 2.035961 GGGTTTTCTGAGTGCCTTTTCC 59.964 50.000 0.00 0.00 0.00 3.13
2234 3033 2.695147 CAGGGTTTTCTGAGTGCCTTTT 59.305 45.455 0.00 0.00 36.93 2.27
2235 3034 2.310538 CAGGGTTTTCTGAGTGCCTTT 58.689 47.619 0.00 0.00 36.93 3.11
2237 3036 0.846693 ACAGGGTTTTCTGAGTGCCT 59.153 50.000 0.00 0.00 38.11 4.75
2238 3037 2.561478 TACAGGGTTTTCTGAGTGCC 57.439 50.000 0.00 0.00 38.11 5.01
2239 3038 3.366374 GCAATACAGGGTTTTCTGAGTGC 60.366 47.826 0.00 0.00 38.11 4.40
2240 3039 4.074970 AGCAATACAGGGTTTTCTGAGTG 58.925 43.478 0.00 0.00 38.11 3.51
2241 3040 4.327680 GAGCAATACAGGGTTTTCTGAGT 58.672 43.478 0.00 0.00 38.11 3.41
2242 3041 3.691609 GGAGCAATACAGGGTTTTCTGAG 59.308 47.826 0.00 0.00 38.11 3.35
2243 3042 3.686016 GGAGCAATACAGGGTTTTCTGA 58.314 45.455 0.00 0.00 38.11 3.27
2244 3043 2.420022 CGGAGCAATACAGGGTTTTCTG 59.580 50.000 0.00 0.00 40.40 3.02
2245 3044 2.039879 ACGGAGCAATACAGGGTTTTCT 59.960 45.455 0.00 0.00 0.00 2.52
2246 3045 2.161609 CACGGAGCAATACAGGGTTTTC 59.838 50.000 0.00 0.00 0.00 2.29
2247 3046 2.159382 CACGGAGCAATACAGGGTTTT 58.841 47.619 0.00 0.00 0.00 2.43
2248 3047 1.821216 CACGGAGCAATACAGGGTTT 58.179 50.000 0.00 0.00 0.00 3.27
2249 3048 0.676782 GCACGGAGCAATACAGGGTT 60.677 55.000 0.00 0.00 44.79 4.11
2251 3050 2.173669 CGCACGGAGCAATACAGGG 61.174 63.158 3.06 0.00 46.13 4.45
2252 3051 1.421410 GACGCACGGAGCAATACAGG 61.421 60.000 3.06 0.00 46.13 4.00
2253 3052 0.458543 AGACGCACGGAGCAATACAG 60.459 55.000 3.06 0.00 46.13 2.74
2291 3191 2.779755 ACAAGGGCAATCACGTCATA 57.220 45.000 0.00 0.00 0.00 2.15
2498 3440 7.549147 AAGTACATTAGTAACTTCTCCCACA 57.451 36.000 0.00 0.00 30.67 4.17
2558 3502 5.412594 CACATATGTCTGCCAGTTAAACACT 59.587 40.000 5.07 0.00 35.35 3.55
2568 3512 4.508551 AATCTTCCACATATGTCTGCCA 57.491 40.909 5.07 0.00 0.00 4.92
2634 3579 6.318144 TGGTTCTAGACTCTAAACTCCGTATG 59.682 42.308 0.00 0.00 0.00 2.39
2635 3580 6.421485 TGGTTCTAGACTCTAAACTCCGTAT 58.579 40.000 0.00 0.00 0.00 3.06
2636 3581 5.809001 TGGTTCTAGACTCTAAACTCCGTA 58.191 41.667 0.00 0.00 0.00 4.02
2637 3582 4.660168 TGGTTCTAGACTCTAAACTCCGT 58.340 43.478 0.00 0.00 0.00 4.69
2638 3583 5.400703 GTTGGTTCTAGACTCTAAACTCCG 58.599 45.833 0.00 0.00 0.00 4.63
2686 3661 0.179234 TCACGGCACCTTCAAGAACA 59.821 50.000 0.00 0.00 0.00 3.18
2724 3708 1.965643 TGTTACTGCTGGGACTACGTT 59.034 47.619 0.00 0.00 0.00 3.99
2796 3797 1.439679 GCCAACGAGAACCTGGTAAG 58.560 55.000 0.00 0.00 32.46 2.34
2894 3896 4.643334 TCATCTGCCATCAAAGATGGAAAG 59.357 41.667 25.85 20.72 46.47 2.62
2909 3911 0.801251 GACAACAGCACTCATCTGCC 59.199 55.000 0.00 0.00 37.96 4.85
2944 3946 4.470170 TCGCGAGCGTGCACGTAT 62.470 61.111 36.80 26.93 42.22 3.06
3126 4159 3.371059 GGGAAGGGACCTCTCTGAAATTC 60.371 52.174 0.00 0.00 0.00 2.17
3168 4201 6.743575 ATTTTACAGGCTGTGTCAAGTATC 57.256 37.500 29.65 0.00 40.94 2.24
3740 4777 8.579006 TCATTGTACCCGTATATTAAGTACCAG 58.421 37.037 0.00 0.00 33.87 4.00
3776 4813 8.782339 TGCTAGATTGATGAATATATGTGTGG 57.218 34.615 0.00 0.00 0.00 4.17
3834 4871 2.801699 CGCCAGAGAACACTGTACAACA 60.802 50.000 0.00 0.00 36.30 3.33
3947 4984 1.164411 GCGGGTTGACATGATGACAA 58.836 50.000 6.24 6.24 30.28 3.18
4009 5046 2.358898 ACAATGTGGTTGCTGTGAGAAC 59.641 45.455 0.00 0.00 41.69 3.01
4093 5130 1.133575 CATTGGTGATCCTGCCCTCAT 60.134 52.381 0.00 0.00 34.23 2.90
4431 6063 4.018960 AGAGCAGGTACTCCATCACAATTT 60.019 41.667 0.00 0.00 34.60 1.82
4432 6064 3.521126 AGAGCAGGTACTCCATCACAATT 59.479 43.478 0.00 0.00 34.60 2.32
4435 6067 2.103373 GAGAGCAGGTACTCCATCACA 58.897 52.381 0.00 0.00 34.60 3.58
4528 6538 2.650116 GCAGAGAACAGGCGGAGGA 61.650 63.158 0.00 0.00 0.00 3.71
4548 6559 3.505386 GAGAGGAGGAGGATATCAGCAA 58.495 50.000 4.83 0.00 0.00 3.91
4555 6566 2.719705 GAGGAAGGAGAGGAGGAGGATA 59.280 54.545 0.00 0.00 0.00 2.59
4600 6611 1.341080 ACAAGGGAACAAGCAATGGG 58.659 50.000 0.00 0.00 0.00 4.00
4628 6644 4.559153 GGTTCCACCATTGAATGAAACTG 58.441 43.478 6.76 0.00 38.42 3.16
4651 6667 2.779506 ACTGGGGAAGAATGAACGTTC 58.220 47.619 21.42 21.42 0.00 3.95
4871 6891 2.417239 TGTTCACCAACAAGAACACGAC 59.583 45.455 4.07 0.00 46.46 4.34
4943 6963 1.212616 CGAATCCGAGGTGAAGATGC 58.787 55.000 0.00 0.00 38.22 3.91
4974 7008 2.362397 CCGTGATCACTAGTAGGTGCAT 59.638 50.000 22.95 0.00 37.16 3.96
4984 7018 1.043116 CCCTGCTCCCGTGATCACTA 61.043 60.000 22.95 8.08 0.00 2.74
4987 7310 2.038813 TCCCTGCTCCCGTGATCA 59.961 61.111 0.00 0.00 0.00 2.92
4994 7317 2.771762 ATCAGCCTCCCTGCTCCC 60.772 66.667 0.00 0.00 40.32 4.30
4997 7320 3.095163 CCCATCAGCCTCCCTGCT 61.095 66.667 0.00 0.00 44.00 4.24
5004 7327 3.160047 CTCGAGCCCCATCAGCCT 61.160 66.667 0.00 0.00 0.00 4.58
5010 7333 0.472734 AGCTTATCCTCGAGCCCCAT 60.473 55.000 6.99 0.00 39.71 4.00
5011 7334 0.187606 TAGCTTATCCTCGAGCCCCA 59.812 55.000 6.99 0.00 39.71 4.96
5012 7335 1.562783 ATAGCTTATCCTCGAGCCCC 58.437 55.000 6.99 0.00 39.71 5.80
5013 7336 2.300437 ACAATAGCTTATCCTCGAGCCC 59.700 50.000 6.99 0.00 39.71 5.19
5015 7338 3.743396 CCAACAATAGCTTATCCTCGAGC 59.257 47.826 6.99 0.00 39.17 5.03
5016 7339 4.202264 ACCCAACAATAGCTTATCCTCGAG 60.202 45.833 5.13 5.13 0.00 4.04
5017 7340 3.709653 ACCCAACAATAGCTTATCCTCGA 59.290 43.478 0.00 0.00 0.00 4.04
5018 7341 3.809832 CACCCAACAATAGCTTATCCTCG 59.190 47.826 0.00 0.00 0.00 4.63
5019 7342 4.576463 CACACCCAACAATAGCTTATCCTC 59.424 45.833 0.00 0.00 0.00 3.71
5022 7345 5.163652 GGAACACACCCAACAATAGCTTATC 60.164 44.000 0.00 0.00 0.00 1.75
5023 7346 4.705023 GGAACACACCCAACAATAGCTTAT 59.295 41.667 0.00 0.00 0.00 1.73
5024 7347 4.076394 GGAACACACCCAACAATAGCTTA 58.924 43.478 0.00 0.00 0.00 3.09
5025 7348 2.890945 GGAACACACCCAACAATAGCTT 59.109 45.455 0.00 0.00 0.00 3.74
5063 7386 2.285083 TGTGCACTGACTTAGCGTTTT 58.715 42.857 19.41 0.00 0.00 2.43
5081 7404 4.382577 GGTCACTTGTTTTGATTGGGTTGT 60.383 41.667 0.00 0.00 0.00 3.32
5195 7530 2.665165 AGGAAACTCCACATTGCAACA 58.335 42.857 0.00 0.00 39.61 3.33
5243 7578 2.905075 TGTGTAGATCAATTGCCTCCG 58.095 47.619 0.00 0.00 0.00 4.63
5423 7758 1.351017 GTTCCTCCATGTCCTCCACAA 59.649 52.381 0.00 0.00 38.97 3.33
5424 7759 0.984230 GTTCCTCCATGTCCTCCACA 59.016 55.000 0.00 0.00 40.18 4.17
5429 7764 2.025887 GTCATTGGTTCCTCCATGTCCT 60.026 50.000 0.00 0.00 46.60 3.85
5433 7768 4.525996 TGTATGTCATTGGTTCCTCCATG 58.474 43.478 0.00 0.00 46.60 3.66
5447 7782 2.879826 CATCTCGTGCACTGTATGTCA 58.120 47.619 16.19 0.00 0.00 3.58
5538 7873 9.871238 AAGATACCACACATTACAAACTAGTAG 57.129 33.333 0.00 0.00 0.00 2.57
5544 7879 8.773404 AGTCTAAGATACCACACATTACAAAC 57.227 34.615 0.00 0.00 0.00 2.93
5552 7887 7.476540 ACATACAAGTCTAAGATACCACACA 57.523 36.000 0.00 0.00 0.00 3.72
5711 8046 4.537688 CCAGATCCATCATATAGGGTGGTT 59.462 45.833 16.01 8.24 33.47 3.67
5715 8050 4.767908 ACACCAGATCCATCATATAGGGT 58.232 43.478 0.00 0.00 0.00 4.34
5804 12418 6.706055 ACGTTAGTGTTCATATTGTCACAG 57.294 37.500 0.00 0.00 33.84 3.66
5812 12426 8.487313 TCATAGCAAAACGTTAGTGTTCATAT 57.513 30.769 0.00 0.00 0.00 1.78
6027 12645 7.482474 TCAATAGCACCAATACATGTGATTTG 58.518 34.615 9.11 9.49 34.37 2.32
6118 12737 9.967346 CCGTAATAAGTTCTCTCATATTTCTCA 57.033 33.333 0.00 0.00 0.00 3.27
6260 12879 3.203487 TGGGGGTGGTGGTATAATTTCTC 59.797 47.826 0.00 0.00 0.00 2.87
6267 12886 1.344291 GGTAGTGGGGGTGGTGGTATA 60.344 57.143 0.00 0.00 0.00 1.47
6379 13399 8.650143 AAGAATTGTTATAGTGTGTTGGGATT 57.350 30.769 0.00 0.00 0.00 3.01
6582 13602 9.726438 GACCATTATTAGTATTAGATGCTGGTT 57.274 33.333 0.00 0.00 0.00 3.67
6625 13645 2.880443 ACTCCAACATGAGCACCATTT 58.120 42.857 0.00 0.00 35.72 2.32
6650 13670 3.056607 GCACTAACCATGCTTCCATTTGT 60.057 43.478 0.00 0.00 40.08 2.83
6697 13717 1.211969 CATTGGCTGCTGTGCTGTC 59.788 57.895 0.00 0.00 32.86 3.51
6739 13759 1.948834 TCCATGGCAAGCATCGTATTG 59.051 47.619 6.96 0.00 0.00 1.90
6765 13785 4.956075 CCTCCTGTTGCCTTATATGGTTTT 59.044 41.667 6.53 0.00 0.00 2.43
6788 13808 7.108841 TGAGTGGATATAACTGTGGTAGAAC 57.891 40.000 0.00 0.00 0.00 3.01
6947 13967 2.102578 GGCCATGGTTACAGCATTCTT 58.897 47.619 14.67 0.00 33.46 2.52
6957 13977 4.041464 TCCTAGTGTAATGGCCATGGTTA 58.959 43.478 21.63 6.03 0.00 2.85
6966 13986 8.765219 CAGAATTCGTTATTCCTAGTGTAATGG 58.235 37.037 0.00 0.00 43.08 3.16
7068 14088 0.944386 GCTGAAAAACTCACTGCCGA 59.056 50.000 0.00 0.00 0.00 5.54
7323 14343 9.840427 AAATTTAGTTCTCAAATGTCGTAATGG 57.160 29.630 0.00 0.00 0.00 3.16
7402 14422 8.889849 ATTATTCAATGCAAAGTACGTACAAC 57.110 30.769 26.55 13.17 0.00 3.32
7531 14553 0.166814 GATGGTGAGCACAGCGAAAC 59.833 55.000 8.78 0.00 46.03 2.78
7536 14558 0.321034 TGTCTGATGGTGAGCACAGC 60.321 55.000 6.37 6.37 43.75 4.40
7577 14599 5.726980 AAGATGCTTTGCCTTTAACATGA 57.273 34.783 0.00 0.00 0.00 3.07
7603 14625 7.116376 CGTGATGTGAACCATATGATAAGGTAC 59.884 40.741 3.65 0.00 34.63 3.34
7653 14676 2.267188 TAGTGAATACGCGGTCACAC 57.733 50.000 29.32 23.25 45.40 3.82
7709 14732 1.343142 TGTAGCATGGACACGTGTTCT 59.657 47.619 26.71 17.62 35.99 3.01
7716 14739 3.334583 TCTTCCTTGTAGCATGGACAC 57.665 47.619 0.00 0.00 37.41 3.67
7877 14900 9.528489 ACTTTGGCAAGAACCTTAATTATTCTA 57.472 29.630 0.00 0.00 32.38 2.10
7921 14944 9.043548 ACAGTACATAACCCAAAGTATTAGTCT 57.956 33.333 0.00 0.00 0.00 3.24
7940 14963 6.485313 CACAAGGAAAAGGTAATGACAGTACA 59.515 38.462 14.45 0.00 0.00 2.90
8143 15178 6.322201 CCATGCCTTCAGACCTACAATTATTT 59.678 38.462 0.00 0.00 0.00 1.40
8179 15214 5.505181 TCCTCTAATTTCACTTTGCTCCT 57.495 39.130 0.00 0.00 0.00 3.69
8239 15278 7.408756 TCAGCATTTATACAGGAGCAAAATT 57.591 32.000 0.00 0.00 0.00 1.82
8276 15316 7.814264 AGGCAAAAGAATCAGATTATACAGG 57.186 36.000 0.00 0.00 0.00 4.00
8316 15356 5.142061 TCGGTTTAGCTCAGTTCACAATA 57.858 39.130 0.00 0.00 0.00 1.90
8330 15370 6.370442 TGTTCTGTCCAACATTATCGGTTTAG 59.630 38.462 0.00 0.00 31.08 1.85
8474 15527 3.188786 CCGCAGAACTAGCACGGC 61.189 66.667 0.00 0.00 37.05 5.68
8476 15529 1.080093 TTCCCGCAGAACTAGCACG 60.080 57.895 0.00 0.00 0.00 5.34
8492 15545 2.069273 CCAGGTCGACATGTTCTGTTC 58.931 52.381 26.57 1.34 38.54 3.18
8517 15597 1.699634 ACCAGCAGTGTAACATGGTCT 59.300 47.619 0.00 0.00 43.93 3.85
8549 15629 0.322456 GGTAGTTCATGCCAGTGCCA 60.322 55.000 0.00 0.00 36.33 4.92
8550 15630 1.032114 GGGTAGTTCATGCCAGTGCC 61.032 60.000 0.00 0.00 34.81 5.01
8557 15637 1.139058 ACGGATCAGGGTAGTTCATGC 59.861 52.381 0.00 0.00 0.00 4.06
8562 15642 1.192428 GGTGACGGATCAGGGTAGTT 58.808 55.000 0.00 0.00 34.75 2.24
8576 15656 1.606889 ACCTCAGGTCTCCGGTGAC 60.607 63.158 25.11 25.11 36.31 3.67
8590 15671 3.334054 AGCAGGGGAAGCCACCTC 61.334 66.667 0.00 0.00 34.05 3.85
8620 15701 6.090783 TCGTAGATCATACAGTTGTGTGTTC 58.909 40.000 8.54 9.53 37.52 3.18
8621 15702 6.020971 TCGTAGATCATACAGTTGTGTGTT 57.979 37.500 8.54 1.37 37.52 3.32
8622 15703 5.414765 TCTCGTAGATCATACAGTTGTGTGT 59.585 40.000 8.54 0.00 38.18 3.72
8623 15704 5.739630 GTCTCGTAGATCATACAGTTGTGTG 59.260 44.000 2.95 2.95 34.16 3.82
8624 15705 5.414765 TGTCTCGTAGATCATACAGTTGTGT 59.585 40.000 0.00 0.00 36.83 3.72
8625 15706 5.880341 TGTCTCGTAGATCATACAGTTGTG 58.120 41.667 0.00 0.00 33.89 3.33
8626 15707 6.701145 ATGTCTCGTAGATCATACAGTTGT 57.299 37.500 0.00 0.00 33.89 3.32
8627 15708 7.702348 TCAAATGTCTCGTAGATCATACAGTTG 59.298 37.037 0.00 0.00 39.63 3.16
8628 15709 7.772166 TCAAATGTCTCGTAGATCATACAGTT 58.228 34.615 0.00 0.00 33.89 3.16
8629 15710 7.334844 TCAAATGTCTCGTAGATCATACAGT 57.665 36.000 0.00 0.00 33.89 3.55
8630 15711 9.899226 TTATCAAATGTCTCGTAGATCATACAG 57.101 33.333 0.00 0.00 33.89 2.74
8632 15713 9.130312 GGTTATCAAATGTCTCGTAGATCATAC 57.870 37.037 0.00 0.00 33.89 2.39
8633 15714 8.856103 TGGTTATCAAATGTCTCGTAGATCATA 58.144 33.333 0.00 0.00 33.89 2.15
8639 15720 5.661458 AGGTGGTTATCAAATGTCTCGTAG 58.339 41.667 0.00 0.00 0.00 3.51
8735 15839 8.630054 ATGGAAATGTTTACAACAGTAGCTAA 57.370 30.769 0.00 0.00 45.95 3.09
8738 15842 6.021596 CGATGGAAATGTTTACAACAGTAGC 58.978 40.000 0.00 0.00 45.95 3.58
8739 15843 6.021596 GCGATGGAAATGTTTACAACAGTAG 58.978 40.000 0.00 0.00 45.95 2.57
8740 15844 5.470437 TGCGATGGAAATGTTTACAACAGTA 59.530 36.000 0.00 0.00 45.95 2.74
8741 15845 4.277174 TGCGATGGAAATGTTTACAACAGT 59.723 37.500 0.00 0.00 45.95 3.55
8742 15846 4.793071 TGCGATGGAAATGTTTACAACAG 58.207 39.130 0.00 0.00 45.95 3.16
8743 15847 4.837896 TGCGATGGAAATGTTTACAACA 57.162 36.364 0.00 0.00 46.94 3.33
8744 15848 6.704512 AAATGCGATGGAAATGTTTACAAC 57.295 33.333 0.00 0.00 34.09 3.32
8851 15955 2.747177 ACGATCCCTATGACTTGGTCA 58.253 47.619 2.80 2.80 46.90 4.02
8942 16046 3.781307 TTCCCATGACGCCGAGGG 61.781 66.667 0.00 0.00 42.86 4.30
8983 16087 1.946283 GCTAGTCGGCAAGGCTTTTCT 60.946 52.381 0.00 0.00 35.65 2.52
9016 16120 0.331616 GGGGCTTGTGGTAATCAGGT 59.668 55.000 0.00 0.00 0.00 4.00
9034 16138 2.279517 GCAGGAGATACACGCCGG 60.280 66.667 0.00 0.00 43.25 6.13
9039 16143 2.005451 CAGCTGTTGCAGGAGATACAC 58.995 52.381 5.25 0.00 42.74 2.90
9072 16176 0.738975 TCCAGCGGTGAGTATCGAAG 59.261 55.000 17.83 0.00 38.61 3.79
9162 16266 4.675190 AAGACTGAAATGAAGCACGATG 57.325 40.909 0.00 0.00 0.00 3.84
9188 16292 6.040955 TCACATACCTCATCAATAGGTCACTC 59.959 42.308 0.00 0.00 44.20 3.51
9190 16294 6.161855 TCACATACCTCATCAATAGGTCAC 57.838 41.667 0.00 0.00 44.20 3.67
9192 16296 5.221521 TGCTCACATACCTCATCAATAGGTC 60.222 44.000 0.00 0.00 44.20 3.85
9273 16377 4.134379 TGGCAAACACACATGAAATTGT 57.866 36.364 0.00 0.00 0.00 2.71
9295 16399 1.336887 CCTATGATGGTACGAAGGCCG 60.337 57.143 0.00 0.00 45.44 6.13
9309 16413 4.141287 CCAACAAACACCTCAACCTATGA 58.859 43.478 0.00 0.00 36.38 2.15
9319 16423 0.185175 GGAGGTCCCAACAAACACCT 59.815 55.000 0.00 0.00 42.24 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.