Multiple sequence alignment - TraesCS6A01G013100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G013100 chr6A 100.000 5036 0 0 1 5036 5938421 5943456 0.000000e+00 9300.0
1 TraesCS6A01G013100 chr6A 85.824 1954 249 25 2403 4337 5901869 5903813 0.000000e+00 2049.0
2 TraesCS6A01G013100 chr6A 86.212 1893 241 15 2459 4337 5917905 5919791 0.000000e+00 2032.0
3 TraesCS6A01G013100 chr6A 82.483 1587 191 34 823 2348 5900398 5901958 0.000000e+00 1310.0
4 TraesCS6A01G013100 chr6A 77.389 1371 242 34 1132 2473 6698704 6700035 0.000000e+00 752.0
5 TraesCS6A01G013100 chr6A 86.357 689 67 13 4317 5001 5904310 5904975 0.000000e+00 726.0
6 TraesCS6A01G013100 chr6A 89.039 593 55 7 1129 1718 5916499 5917084 0.000000e+00 726.0
7 TraesCS6A01G013100 chr6A 79.641 948 151 23 1757 2690 5917082 5918001 1.180000e-180 643.0
8 TraesCS6A01G013100 chr6A 99.043 209 2 0 98 306 5933546 5933754 4.760000e-100 375.0
9 TraesCS6A01G013100 chr6A 80.159 378 64 8 2315 2689 5917559 5917928 6.420000e-69 272.0
10 TraesCS6A01G013100 chr6A 85.375 253 29 5 4330 4580 5920276 5920522 6.470000e-64 255.0
11 TraesCS6A01G013100 chr6A 82.569 109 14 2 2387 2495 5917559 5917662 1.930000e-14 91.6
12 TraesCS6A01G013100 chr6D 96.227 4214 126 14 819 5015 6424875 6429072 0.000000e+00 6870.0
13 TraesCS6A01G013100 chr6D 89.877 2598 235 19 2455 5036 6371576 6374161 0.000000e+00 3315.0
14 TraesCS6A01G013100 chr6D 86.111 1872 240 15 2455 4310 6353172 6355039 0.000000e+00 1999.0
15 TraesCS6A01G013100 chr6D 86.068 1658 212 14 2443 4086 6497689 6499341 0.000000e+00 1764.0
16 TraesCS6A01G013100 chr6D 82.781 1719 236 37 1009 2690 6441676 6443371 0.000000e+00 1480.0
17 TraesCS6A01G013100 chr6D 87.700 1065 129 2 2977 4040 6465690 6466753 0.000000e+00 1240.0
18 TraesCS6A01G013100 chr6D 82.681 1201 133 29 819 2002 6496004 6497146 0.000000e+00 996.0
19 TraesCS6A01G013100 chr6D 78.045 1371 246 32 1132 2473 7032263 7033607 0.000000e+00 813.0
20 TraesCS6A01G013100 chr6D 84.994 813 98 14 1134 1942 6370256 6371048 0.000000e+00 804.0
21 TraesCS6A01G013100 chr6D 81.021 764 86 28 901 1623 6351359 6352104 2.050000e-153 553.0
22 TraesCS6A01G013100 chr6D 85.622 466 66 1 1537 2002 6352091 6352555 5.860000e-134 488.0
23 TraesCS6A01G013100 chr6D 85.464 399 58 0 2026 2424 6352609 6353007 2.800000e-112 416.0
24 TraesCS6A01G013100 chr6D 94.340 265 12 2 364 628 6424555 6424816 2.180000e-108 403.0
25 TraesCS6A01G013100 chr6D 87.126 334 43 0 2019 2352 6371078 6371411 3.680000e-101 379.0
26 TraesCS6A01G013100 chr6D 84.267 375 49 5 2455 2819 6443270 6443644 1.720000e-94 357.0
27 TraesCS6A01G013100 chr6D 86.239 327 45 0 2026 2352 6497200 6497526 6.200000e-94 355.0
28 TraesCS6A01G013100 chr6D 82.493 377 62 4 2315 2689 6352826 6353200 1.350000e-85 327.0
29 TraesCS6A01G013100 chr6D 98.324 179 2 1 448 625 6495767 6495945 3.790000e-81 313.0
30 TraesCS6A01G013100 chr6D 80.688 378 67 6 2315 2689 6442924 6443298 6.380000e-74 289.0
31 TraesCS6A01G013100 chr6D 83.813 278 45 0 2403 2680 6371318 6371595 1.080000e-66 265.0
32 TraesCS6A01G013100 chr6D 89.573 211 19 2 4371 4579 6507756 6507965 1.080000e-66 265.0
33 TraesCS6A01G013100 chr6D 79.112 383 68 11 3960 4337 6505056 6505431 2.330000e-63 254.0
34 TraesCS6A01G013100 chr6D 89.503 181 17 2 2316 2495 6426297 6426476 1.410000e-55 228.0
35 TraesCS6A01G013100 chr6D 89.503 181 17 2 2244 2423 6426369 6426548 1.410000e-55 228.0
36 TraesCS6A01G013100 chr6D 95.172 145 4 1 307 451 6484367 6484508 5.070000e-55 226.0
37 TraesCS6A01G013100 chr6D 85.321 109 16 0 2387 2495 6442924 6443032 4.120000e-21 113.0
38 TraesCS6A01G013100 chr6D 85.577 104 15 0 2387 2490 6352826 6352929 5.330000e-20 110.0
39 TraesCS6A01G013100 chr6D 75.258 194 37 9 629 820 436728032 436727848 1.160000e-11 82.4
40 TraesCS6A01G013100 chr6B 85.223 1658 218 18 2444 4086 11793670 11795315 0.000000e+00 1679.0
41 TraesCS6A01G013100 chr6B 87.616 1187 143 4 2902 4086 11599607 11600791 0.000000e+00 1375.0
42 TraesCS6A01G013100 chr6B 82.931 1078 121 35 824 1864 11592527 11593578 0.000000e+00 913.0
43 TraesCS6A01G013100 chr6B 84.645 775 58 23 823 1558 11792025 11792777 0.000000e+00 715.0
44 TraesCS6A01G013100 chr6B 76.768 1244 247 30 1130 2346 12634284 12633056 0.000000e+00 658.0
45 TraesCS6A01G013100 chr6B 82.311 701 82 22 4319 5015 11603544 11604206 2.030000e-158 569.0
46 TraesCS6A01G013100 chr6B 81.996 461 74 9 3880 4337 11795651 11796105 2.840000e-102 383.0
47 TraesCS6A01G013100 chr6B 86.006 343 48 0 1660 2002 11792792 11793134 7.970000e-98 368.0
48 TraesCS6A01G013100 chr6B 80.385 260 46 3 2387 2646 11593680 11593934 5.150000e-45 193.0
49 TraesCS6A01G013100 chr6B 84.828 145 9 4 823 965 11764542 11764675 3.160000e-27 134.0
50 TraesCS6A01G013100 chr2A 93.125 320 12 1 1 310 43468533 43468852 1.280000e-125 460.0
51 TraesCS6A01G013100 chr7A 92.188 320 14 2 1 309 3774293 3773974 4.630000e-120 442.0
52 TraesCS6A01G013100 chr7A 89.545 220 11 3 98 306 3779183 3778965 8.310000e-68 268.0
53 TraesCS6A01G013100 chr3B 89.557 316 21 5 2 307 90124256 90124569 1.700000e-104 390.0
54 TraesCS6A01G013100 chr3B 93.678 174 9 1 647 820 63002296 63002467 5.000000e-65 259.0
55 TraesCS6A01G013100 chr3B 84.810 79 8 4 623 698 752110207 752110284 5.410000e-10 76.8
56 TraesCS6A01G013100 chr3B 74.747 198 35 12 630 821 111133632 111133820 1.940000e-09 75.0
57 TraesCS6A01G013100 chr2B 88.889 315 23 6 2 306 390360288 390360600 1.320000e-100 377.0
58 TraesCS6A01G013100 chr2B 77.725 211 31 15 622 822 411792381 411792177 1.150000e-21 115.0
59 TraesCS6A01G013100 chr2B 76.238 202 40 7 624 821 483456487 483456290 3.210000e-17 100.0
60 TraesCS6A01G013100 chr5B 88.854 323 13 11 7 313 289261638 289261323 4.760000e-100 375.0
61 TraesCS6A01G013100 chr5B 88.571 315 22 3 5 309 411668006 411667696 2.210000e-98 370.0
62 TraesCS6A01G013100 chr5B 88.088 319 19 8 1 306 671125451 671125763 1.330000e-95 361.0
63 TraesCS6A01G013100 chr5B 85.714 224 13 12 96 306 671111818 671112035 8.490000e-53 219.0
64 TraesCS6A01G013100 chr1A 85.460 337 29 18 1 325 471882815 471883143 2.910000e-87 333.0
65 TraesCS6A01G013100 chr1A 85.163 337 30 18 1 325 471955420 471955748 1.350000e-85 327.0
66 TraesCS6A01G013100 chr4B 86.120 317 24 13 5 306 670108713 670108402 1.750000e-84 324.0
67 TraesCS6A01G013100 chr5A 95.210 167 8 0 654 820 567110800 567110966 1.080000e-66 265.0
68 TraesCS6A01G013100 chrUn 93.678 174 9 1 647 820 178721552 178721381 5.000000e-65 259.0
69 TraesCS6A01G013100 chrUn 93.678 174 9 1 647 820 196160305 196160476 5.000000e-65 259.0
70 TraesCS6A01G013100 chrUn 93.678 174 9 1 647 820 315745082 315744911 5.000000e-65 259.0
71 TraesCS6A01G013100 chrUn 93.678 174 9 1 647 820 333536782 333536953 5.000000e-65 259.0
72 TraesCS6A01G013100 chrUn 93.678 174 9 1 647 820 366702073 366701902 5.000000e-65 259.0
73 TraesCS6A01G013100 chrUn 93.678 174 9 1 647 820 366733657 366733486 5.000000e-65 259.0
74 TraesCS6A01G013100 chr1D 89.216 204 14 7 626 828 96949603 96949799 1.080000e-61 248.0
75 TraesCS6A01G013100 chr7D 85.185 189 20 8 630 815 174342158 174342341 2.390000e-43 187.0
76 TraesCS6A01G013100 chr7B 87.692 65 8 0 645 709 723178571 723178507 5.410000e-10 76.8
77 TraesCS6A01G013100 chr2D 82.143 84 12 3 618 698 302648758 302648841 9.050000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G013100 chr6A 5938421 5943456 5035 False 9300.000000 9300 100.000000 1 5036 1 chr6A.!!$F2 5035
1 TraesCS6A01G013100 chr6A 5900398 5904975 4577 False 1361.666667 2049 84.888000 823 5001 3 chr6A.!!$F4 4178
2 TraesCS6A01G013100 chr6A 6698704 6700035 1331 False 752.000000 752 77.389000 1132 2473 1 chr6A.!!$F3 1341
3 TraesCS6A01G013100 chr6A 5916499 5920522 4023 False 669.933333 2032 83.832500 1129 4580 6 chr6A.!!$F5 3451
4 TraesCS6A01G013100 chr6D 6424555 6429072 4517 False 1932.250000 6870 92.393250 364 5015 4 chr6D.!!$F6 4651
5 TraesCS6A01G013100 chr6D 6465690 6466753 1063 False 1240.000000 1240 87.700000 2977 4040 1 chr6D.!!$F1 1063
6 TraesCS6A01G013100 chr6D 6370256 6374161 3905 False 1190.750000 3315 86.452500 1134 5036 4 chr6D.!!$F5 3902
7 TraesCS6A01G013100 chr6D 6495767 6499341 3574 False 857.000000 1764 88.328000 448 4086 4 chr6D.!!$F8 3638
8 TraesCS6A01G013100 chr6D 7032263 7033607 1344 False 813.000000 813 78.045000 1132 2473 1 chr6D.!!$F3 1341
9 TraesCS6A01G013100 chr6D 6351359 6355039 3680 False 648.833333 1999 84.381333 901 4310 6 chr6D.!!$F4 3409
10 TraesCS6A01G013100 chr6D 6441676 6443644 1968 False 559.750000 1480 83.264250 1009 2819 4 chr6D.!!$F7 1810
11 TraesCS6A01G013100 chr6D 6505056 6507965 2909 False 259.500000 265 84.342500 3960 4579 2 chr6D.!!$F9 619
12 TraesCS6A01G013100 chr6B 11599607 11604206 4599 False 972.000000 1375 84.963500 2902 5015 2 chr6B.!!$F3 2113
13 TraesCS6A01G013100 chr6B 11792025 11796105 4080 False 786.250000 1679 84.467500 823 4337 4 chr6B.!!$F4 3514
14 TraesCS6A01G013100 chr6B 12633056 12634284 1228 True 658.000000 658 76.768000 1130 2346 1 chr6B.!!$R1 1216
15 TraesCS6A01G013100 chr6B 11592527 11593934 1407 False 553.000000 913 81.658000 824 2646 2 chr6B.!!$F2 1822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.033405 AGAAAGAGATCGACCGGGGA 60.033 55.000 6.32 2.46 0.00 4.81 F
1051 1113 0.109735 CTCTGCTCTACGTTCGTGCA 60.110 55.000 8.14 3.66 0.00 4.57 F
1822 2057 1.854126 CGCTTTCAAGTGCAAACCAAG 59.146 47.619 0.00 0.00 0.00 3.61 F
2748 3305 1.197036 GAACTCGCCCTTAGCAACAAC 59.803 52.381 0.00 0.00 44.04 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2057 0.400594 AGGTTTAGGTGTGTGAGGGC 59.599 55.000 0.00 0.00 0.00 5.19 R
2724 3281 0.685097 TGCTAAGGGCGAGTTCAGTT 59.315 50.000 0.00 0.00 45.43 3.16 R
3622 4179 1.141657 AGTCAAGTCTGCCAAGCTTGA 59.858 47.619 28.05 7.89 40.80 3.02 R
4689 9253 3.762288 GGTGCCGATACTCCTATGTATCA 59.238 47.826 12.99 0.00 45.34 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.187946 GACATGGAGGCGGAGGTG 59.812 66.667 0.00 0.00 0.00 4.00
22 23 3.391665 GACATGGAGGCGGAGGTGG 62.392 68.421 0.00 0.00 0.00 4.61
23 24 3.402681 CATGGAGGCGGAGGTGGT 61.403 66.667 0.00 0.00 0.00 4.16
24 25 3.402681 ATGGAGGCGGAGGTGGTG 61.403 66.667 0.00 0.00 0.00 4.17
27 28 4.083862 GAGGCGGAGGTGGTGGAC 62.084 72.222 0.00 0.00 0.00 4.02
28 29 4.954118 AGGCGGAGGTGGTGGACA 62.954 66.667 0.00 0.00 0.00 4.02
29 30 3.717294 GGCGGAGGTGGTGGACAT 61.717 66.667 0.00 0.00 0.00 3.06
30 31 2.436646 GCGGAGGTGGTGGACATG 60.437 66.667 0.00 0.00 0.00 3.21
31 32 2.268920 CGGAGGTGGTGGACATGG 59.731 66.667 0.00 0.00 0.00 3.66
32 33 2.044946 GGAGGTGGTGGACATGGC 60.045 66.667 0.00 0.00 0.00 4.40
33 34 2.606587 GGAGGTGGTGGACATGGCT 61.607 63.158 0.00 0.00 0.00 4.75
34 35 1.078143 GAGGTGGTGGACATGGCTC 60.078 63.158 0.00 0.00 0.00 4.70
35 36 2.436646 GGTGGTGGACATGGCTCG 60.437 66.667 0.00 0.00 0.00 5.03
36 37 2.436646 GTGGTGGACATGGCTCGG 60.437 66.667 0.00 0.00 0.00 4.63
37 38 2.927856 TGGTGGACATGGCTCGGT 60.928 61.111 0.00 0.00 0.00 4.69
38 39 2.125106 GGTGGACATGGCTCGGTC 60.125 66.667 0.00 0.00 0.00 4.79
39 40 2.509336 GTGGACATGGCTCGGTCG 60.509 66.667 0.00 0.00 34.87 4.79
40 41 4.451150 TGGACATGGCTCGGTCGC 62.451 66.667 0.00 0.00 34.87 5.19
42 43 4.492160 GACATGGCTCGGTCGCGA 62.492 66.667 3.71 3.71 0.00 5.87
43 44 3.982372 GACATGGCTCGGTCGCGAA 62.982 63.158 12.06 0.00 0.00 4.70
44 45 3.554692 CATGGCTCGGTCGCGAAC 61.555 66.667 15.81 15.81 0.00 3.95
48 49 4.465512 GCTCGGTCGCGAACGGTA 62.466 66.667 41.95 25.71 42.74 4.02
49 50 2.277120 CTCGGTCGCGAACGGTAG 60.277 66.667 41.95 30.32 42.74 3.18
50 51 4.465512 TCGGTCGCGAACGGTAGC 62.466 66.667 41.95 14.44 42.74 3.58
51 52 4.471726 CGGTCGCGAACGGTAGCT 62.472 66.667 37.35 0.00 37.98 3.32
52 53 2.793946 GGTCGCGAACGGTAGCTA 59.206 61.111 12.06 0.00 40.63 3.32
53 54 1.298190 GGTCGCGAACGGTAGCTAG 60.298 63.158 12.06 0.00 40.63 3.42
54 55 1.709147 GGTCGCGAACGGTAGCTAGA 61.709 60.000 12.06 0.00 40.63 2.43
55 56 0.307146 GTCGCGAACGGTAGCTAGAT 59.693 55.000 12.06 0.00 40.63 1.98
56 57 0.306840 TCGCGAACGGTAGCTAGATG 59.693 55.000 6.20 0.00 40.63 2.90
57 58 1.269444 CGCGAACGGTAGCTAGATGC 61.269 60.000 0.00 0.00 37.55 3.91
69 70 3.913548 GCTAGATGCGATCTCTCTTGA 57.086 47.619 0.00 0.00 40.76 3.02
70 71 4.439305 GCTAGATGCGATCTCTCTTGAT 57.561 45.455 0.00 0.00 40.76 2.57
71 72 4.414852 GCTAGATGCGATCTCTCTTGATC 58.585 47.826 0.00 0.00 40.76 2.92
72 73 4.156556 GCTAGATGCGATCTCTCTTGATCT 59.843 45.833 0.00 0.00 40.32 2.75
73 74 4.508461 AGATGCGATCTCTCTTGATCTG 57.492 45.455 0.00 0.00 40.32 2.90
74 75 4.143543 AGATGCGATCTCTCTTGATCTGA 58.856 43.478 0.00 0.00 40.32 3.27
75 76 4.768448 AGATGCGATCTCTCTTGATCTGAT 59.232 41.667 0.00 0.00 40.32 2.90
76 77 4.240175 TGCGATCTCTCTTGATCTGATG 57.760 45.455 0.00 0.00 40.32 3.07
77 78 3.887716 TGCGATCTCTCTTGATCTGATGA 59.112 43.478 0.00 0.00 40.32 2.92
78 79 4.023021 TGCGATCTCTCTTGATCTGATGAG 60.023 45.833 0.00 0.00 40.32 2.90
79 80 4.616604 GCGATCTCTCTTGATCTGATGAGG 60.617 50.000 0.00 0.00 40.32 3.86
80 81 4.761227 CGATCTCTCTTGATCTGATGAGGA 59.239 45.833 0.00 0.00 40.32 3.71
81 82 5.241285 CGATCTCTCTTGATCTGATGAGGAA 59.759 44.000 0.00 0.00 40.32 3.36
82 83 6.569035 CGATCTCTCTTGATCTGATGAGGAAG 60.569 46.154 0.00 0.00 40.32 3.46
83 84 5.764432 TCTCTCTTGATCTGATGAGGAAGA 58.236 41.667 0.00 0.00 0.00 2.87
84 85 5.829391 TCTCTCTTGATCTGATGAGGAAGAG 59.171 44.000 13.81 13.81 39.92 2.85
85 86 4.894705 TCTCTTGATCTGATGAGGAAGAGG 59.105 45.833 17.02 0.00 39.50 3.69
86 87 3.387374 TCTTGATCTGATGAGGAAGAGGC 59.613 47.826 0.00 0.00 0.00 4.70
87 88 3.043465 TGATCTGATGAGGAAGAGGCT 57.957 47.619 0.00 0.00 0.00 4.58
88 89 2.964464 TGATCTGATGAGGAAGAGGCTC 59.036 50.000 6.34 6.34 0.00 4.70
89 90 2.844654 TCTGATGAGGAAGAGGCTCT 57.155 50.000 12.24 12.24 0.00 4.09
90 91 2.386779 TCTGATGAGGAAGAGGCTCTG 58.613 52.381 19.53 1.82 0.00 3.35
91 92 2.109774 CTGATGAGGAAGAGGCTCTGT 58.890 52.381 19.53 8.35 0.00 3.41
92 93 2.500910 CTGATGAGGAAGAGGCTCTGTT 59.499 50.000 19.53 2.40 0.00 3.16
93 94 3.703556 CTGATGAGGAAGAGGCTCTGTTA 59.296 47.826 19.53 3.25 0.00 2.41
94 95 3.449018 TGATGAGGAAGAGGCTCTGTTAC 59.551 47.826 19.53 3.72 0.00 2.50
95 96 2.180276 TGAGGAAGAGGCTCTGTTACC 58.820 52.381 19.53 17.86 0.00 2.85
96 97 2.180276 GAGGAAGAGGCTCTGTTACCA 58.820 52.381 19.53 0.00 0.00 3.25
97 98 2.769095 GAGGAAGAGGCTCTGTTACCAT 59.231 50.000 19.53 0.00 0.00 3.55
98 99 2.503356 AGGAAGAGGCTCTGTTACCATG 59.497 50.000 19.53 0.00 0.00 3.66
99 100 2.237392 GGAAGAGGCTCTGTTACCATGT 59.763 50.000 19.53 0.00 0.00 3.21
100 101 3.451178 GGAAGAGGCTCTGTTACCATGTA 59.549 47.826 19.53 0.00 0.00 2.29
101 102 4.081087 GGAAGAGGCTCTGTTACCATGTAA 60.081 45.833 19.53 0.00 0.00 2.41
102 103 5.488341 GAAGAGGCTCTGTTACCATGTAAA 58.512 41.667 19.53 0.00 0.00 2.01
103 104 5.499004 AGAGGCTCTGTTACCATGTAAAA 57.501 39.130 17.96 0.00 0.00 1.52
104 105 6.067217 AGAGGCTCTGTTACCATGTAAAAT 57.933 37.500 17.96 0.00 0.00 1.82
105 106 7.195374 AGAGGCTCTGTTACCATGTAAAATA 57.805 36.000 17.96 0.00 0.00 1.40
106 107 7.275920 AGAGGCTCTGTTACCATGTAAAATAG 58.724 38.462 17.96 0.00 0.00 1.73
107 108 6.958767 AGGCTCTGTTACCATGTAAAATAGT 58.041 36.000 0.00 0.00 0.00 2.12
108 109 7.402862 AGGCTCTGTTACCATGTAAAATAGTT 58.597 34.615 0.00 0.00 0.00 2.24
109 110 7.888546 AGGCTCTGTTACCATGTAAAATAGTTT 59.111 33.333 0.00 0.00 0.00 2.66
110 111 7.968405 GGCTCTGTTACCATGTAAAATAGTTTG 59.032 37.037 0.00 0.00 0.00 2.93
111 112 7.968405 GCTCTGTTACCATGTAAAATAGTTTGG 59.032 37.037 0.00 0.00 0.00 3.28
112 113 8.343168 TCTGTTACCATGTAAAATAGTTTGGG 57.657 34.615 0.00 0.00 0.00 4.12
113 114 8.164733 TCTGTTACCATGTAAAATAGTTTGGGA 58.835 33.333 0.00 0.00 0.00 4.37
114 115 8.707796 TGTTACCATGTAAAATAGTTTGGGAA 57.292 30.769 0.00 0.00 0.00 3.97
115 116 8.798402 TGTTACCATGTAAAATAGTTTGGGAAG 58.202 33.333 0.00 0.00 0.00 3.46
116 117 6.280855 ACCATGTAAAATAGTTTGGGAAGC 57.719 37.500 0.00 0.00 0.00 3.86
117 118 5.105917 ACCATGTAAAATAGTTTGGGAAGCG 60.106 40.000 0.00 0.00 0.00 4.68
118 119 5.105917 CCATGTAAAATAGTTTGGGAAGCGT 60.106 40.000 0.00 0.00 0.00 5.07
119 120 6.094325 CCATGTAAAATAGTTTGGGAAGCGTA 59.906 38.462 0.00 0.00 0.00 4.42
120 121 6.730960 TGTAAAATAGTTTGGGAAGCGTAG 57.269 37.500 0.00 0.00 0.00 3.51
121 122 6.465948 TGTAAAATAGTTTGGGAAGCGTAGA 58.534 36.000 0.00 0.00 0.00 2.59
122 123 6.935771 TGTAAAATAGTTTGGGAAGCGTAGAA 59.064 34.615 0.00 0.00 0.00 2.10
123 124 5.874895 AAATAGTTTGGGAAGCGTAGAAC 57.125 39.130 0.00 0.00 0.00 3.01
124 125 2.180432 AGTTTGGGAAGCGTAGAACC 57.820 50.000 0.00 0.00 0.00 3.62
125 126 1.418637 AGTTTGGGAAGCGTAGAACCA 59.581 47.619 0.00 0.00 0.00 3.67
126 127 2.039879 AGTTTGGGAAGCGTAGAACCAT 59.960 45.455 0.00 0.00 0.00 3.55
127 128 2.817844 GTTTGGGAAGCGTAGAACCATT 59.182 45.455 0.00 0.00 0.00 3.16
128 129 2.871096 TGGGAAGCGTAGAACCATTT 57.129 45.000 0.00 0.00 0.00 2.32
129 130 2.432444 TGGGAAGCGTAGAACCATTTG 58.568 47.619 0.00 0.00 0.00 2.32
130 131 2.224670 TGGGAAGCGTAGAACCATTTGT 60.225 45.455 0.00 0.00 0.00 2.83
131 132 2.418976 GGGAAGCGTAGAACCATTTGTC 59.581 50.000 0.00 0.00 0.00 3.18
132 133 3.335579 GGAAGCGTAGAACCATTTGTCT 58.664 45.455 0.00 0.00 0.00 3.41
133 134 3.371285 GGAAGCGTAGAACCATTTGTCTC 59.629 47.826 0.00 0.00 0.00 3.36
134 135 2.607187 AGCGTAGAACCATTTGTCTCG 58.393 47.619 0.00 0.00 0.00 4.04
135 136 1.659098 GCGTAGAACCATTTGTCTCGG 59.341 52.381 0.00 0.00 0.00 4.63
136 137 2.268298 CGTAGAACCATTTGTCTCGGG 58.732 52.381 0.00 0.00 0.00 5.14
137 138 2.007608 GTAGAACCATTTGTCTCGGGC 58.992 52.381 0.00 0.00 0.00 6.13
138 139 0.322546 AGAACCATTTGTCTCGGGCC 60.323 55.000 0.00 0.00 0.00 5.80
139 140 1.644786 GAACCATTTGTCTCGGGCCG 61.645 60.000 22.51 22.51 0.00 6.13
140 141 3.508840 CCATTTGTCTCGGGCCGC 61.509 66.667 23.83 8.26 0.00 6.53
141 142 3.864686 CATTTGTCTCGGGCCGCG 61.865 66.667 23.83 17.06 0.00 6.46
142 143 4.388499 ATTTGTCTCGGGCCGCGT 62.388 61.111 23.83 0.00 0.00 6.01
143 144 3.894547 ATTTGTCTCGGGCCGCGTT 62.895 57.895 23.83 0.00 0.00 4.84
146 147 4.424566 GTCTCGGGCCGCGTTGTA 62.425 66.667 23.83 0.83 0.00 2.41
147 148 3.454573 TCTCGGGCCGCGTTGTAT 61.455 61.111 23.83 0.00 0.00 2.29
148 149 2.120282 TCTCGGGCCGCGTTGTATA 61.120 57.895 23.83 0.00 0.00 1.47
149 150 1.006571 CTCGGGCCGCGTTGTATAT 60.007 57.895 23.83 0.00 0.00 0.86
150 151 0.241749 CTCGGGCCGCGTTGTATATA 59.758 55.000 23.83 0.00 0.00 0.86
151 152 0.889994 TCGGGCCGCGTTGTATATAT 59.110 50.000 23.83 0.00 0.00 0.86
152 153 1.273048 TCGGGCCGCGTTGTATATATT 59.727 47.619 23.83 0.00 0.00 1.28
153 154 1.392168 CGGGCCGCGTTGTATATATTG 59.608 52.381 15.42 0.00 0.00 1.90
154 155 2.690786 GGGCCGCGTTGTATATATTGA 58.309 47.619 4.92 0.00 0.00 2.57
155 156 2.671396 GGGCCGCGTTGTATATATTGAG 59.329 50.000 4.92 0.00 0.00 3.02
156 157 2.671396 GGCCGCGTTGTATATATTGAGG 59.329 50.000 4.92 0.00 0.00 3.86
157 158 2.093783 GCCGCGTTGTATATATTGAGGC 59.906 50.000 4.92 5.83 35.26 4.70
158 159 3.322369 CCGCGTTGTATATATTGAGGCA 58.678 45.455 4.92 0.00 0.00 4.75
159 160 3.743911 CCGCGTTGTATATATTGAGGCAA 59.256 43.478 4.92 0.00 0.00 4.52
160 161 4.212425 CCGCGTTGTATATATTGAGGCAAA 59.788 41.667 4.92 0.00 0.00 3.68
161 162 5.374080 CGCGTTGTATATATTGAGGCAAAG 58.626 41.667 0.00 0.00 0.00 2.77
162 163 5.147162 GCGTTGTATATATTGAGGCAAAGC 58.853 41.667 0.00 0.00 35.21 3.51
172 173 3.051210 GGCAAAGCCTTGGTGGAC 58.949 61.111 0.00 0.00 46.69 4.02
173 174 1.832167 GGCAAAGCCTTGGTGGACA 60.832 57.895 0.00 0.00 46.69 4.02
174 175 1.398958 GGCAAAGCCTTGGTGGACAA 61.399 55.000 0.00 0.00 46.69 3.18
184 185 3.485463 TTGGTGGACAAGTTACAGAGG 57.515 47.619 0.00 0.00 33.18 3.69
185 186 2.684943 TGGTGGACAAGTTACAGAGGA 58.315 47.619 0.00 0.00 0.00 3.71
186 187 2.632996 TGGTGGACAAGTTACAGAGGAG 59.367 50.000 0.00 0.00 0.00 3.69
187 188 2.897969 GGTGGACAAGTTACAGAGGAGA 59.102 50.000 0.00 0.00 0.00 3.71
188 189 3.323979 GGTGGACAAGTTACAGAGGAGAA 59.676 47.826 0.00 0.00 0.00 2.87
189 190 4.561105 GTGGACAAGTTACAGAGGAGAAG 58.439 47.826 0.00 0.00 0.00 2.85
190 191 4.281182 GTGGACAAGTTACAGAGGAGAAGA 59.719 45.833 0.00 0.00 0.00 2.87
191 192 5.046950 GTGGACAAGTTACAGAGGAGAAGAT 60.047 44.000 0.00 0.00 0.00 2.40
192 193 5.186021 TGGACAAGTTACAGAGGAGAAGATC 59.814 44.000 0.00 0.00 0.00 2.75
193 194 5.317733 ACAAGTTACAGAGGAGAAGATCG 57.682 43.478 0.00 0.00 0.00 3.69
194 195 5.010933 ACAAGTTACAGAGGAGAAGATCGA 58.989 41.667 0.00 0.00 0.00 3.59
195 196 5.106078 ACAAGTTACAGAGGAGAAGATCGAC 60.106 44.000 0.00 0.00 0.00 4.20
196 197 4.850680 AGTTACAGAGGAGAAGATCGACT 58.149 43.478 0.00 0.00 0.00 4.18
197 198 5.991861 AGTTACAGAGGAGAAGATCGACTA 58.008 41.667 0.00 0.00 0.00 2.59
198 199 6.053005 AGTTACAGAGGAGAAGATCGACTAG 58.947 44.000 0.00 0.00 0.00 2.57
199 200 3.815809 ACAGAGGAGAAGATCGACTAGG 58.184 50.000 0.00 0.00 0.00 3.02
200 201 3.146066 CAGAGGAGAAGATCGACTAGGG 58.854 54.545 0.00 0.00 0.00 3.53
201 202 3.050089 AGAGGAGAAGATCGACTAGGGA 58.950 50.000 0.00 0.00 0.00 4.20
202 203 3.072476 AGAGGAGAAGATCGACTAGGGAG 59.928 52.174 0.00 0.00 0.00 4.30
203 204 3.050089 AGGAGAAGATCGACTAGGGAGA 58.950 50.000 0.00 0.00 0.00 3.71
204 205 3.072476 AGGAGAAGATCGACTAGGGAGAG 59.928 52.174 0.00 0.00 0.00 3.20
205 206 3.071892 GGAGAAGATCGACTAGGGAGAGA 59.928 52.174 0.00 0.00 0.00 3.10
206 207 4.263331 GGAGAAGATCGACTAGGGAGAGAT 60.263 50.000 0.00 0.00 0.00 2.75
207 208 5.313712 GAGAAGATCGACTAGGGAGAGATT 58.686 45.833 0.00 0.00 0.00 2.40
208 209 5.070001 AGAAGATCGACTAGGGAGAGATTG 58.930 45.833 0.00 0.00 0.00 2.67
209 210 4.715534 AGATCGACTAGGGAGAGATTGA 57.284 45.455 0.00 0.00 0.00 2.57
210 211 4.394729 AGATCGACTAGGGAGAGATTGAC 58.605 47.826 0.00 0.00 0.00 3.18
211 212 2.933573 TCGACTAGGGAGAGATTGACC 58.066 52.381 0.00 0.00 0.00 4.02
212 213 1.604755 CGACTAGGGAGAGATTGACCG 59.395 57.143 0.00 0.00 0.00 4.79
213 214 1.957877 GACTAGGGAGAGATTGACCGG 59.042 57.143 0.00 0.00 0.00 5.28
214 215 1.569548 ACTAGGGAGAGATTGACCGGA 59.430 52.381 9.46 0.00 0.00 5.14
215 216 2.024273 ACTAGGGAGAGATTGACCGGAA 60.024 50.000 9.46 0.00 0.00 4.30
216 217 1.196012 AGGGAGAGATTGACCGGAAC 58.804 55.000 9.46 1.77 0.00 3.62
217 218 0.902531 GGGAGAGATTGACCGGAACA 59.097 55.000 9.46 5.02 0.00 3.18
218 219 1.134670 GGGAGAGATTGACCGGAACAG 60.135 57.143 9.46 0.00 0.00 3.16
219 220 1.825474 GGAGAGATTGACCGGAACAGA 59.175 52.381 9.46 0.00 0.00 3.41
220 221 2.233922 GGAGAGATTGACCGGAACAGAA 59.766 50.000 9.46 0.00 0.00 3.02
221 222 3.306780 GGAGAGATTGACCGGAACAGAAA 60.307 47.826 9.46 0.00 0.00 2.52
222 223 3.929610 GAGAGATTGACCGGAACAGAAAG 59.070 47.826 9.46 0.00 0.00 2.62
223 224 3.578716 AGAGATTGACCGGAACAGAAAGA 59.421 43.478 9.46 0.00 0.00 2.52
224 225 3.929610 GAGATTGACCGGAACAGAAAGAG 59.070 47.826 9.46 0.00 0.00 2.85
225 226 3.578716 AGATTGACCGGAACAGAAAGAGA 59.421 43.478 9.46 0.00 0.00 3.10
226 227 4.223923 AGATTGACCGGAACAGAAAGAGAT 59.776 41.667 9.46 0.00 0.00 2.75
227 228 3.594603 TGACCGGAACAGAAAGAGATC 57.405 47.619 9.46 0.00 0.00 2.75
228 229 2.094700 TGACCGGAACAGAAAGAGATCG 60.095 50.000 9.46 0.00 0.00 3.69
229 230 2.163815 GACCGGAACAGAAAGAGATCGA 59.836 50.000 9.46 0.00 0.00 3.59
230 231 2.094649 ACCGGAACAGAAAGAGATCGAC 60.095 50.000 9.46 0.00 0.00 4.20
231 232 2.531206 CGGAACAGAAAGAGATCGACC 58.469 52.381 0.00 0.00 0.00 4.79
232 233 2.531206 GGAACAGAAAGAGATCGACCG 58.469 52.381 0.00 0.00 0.00 4.79
233 234 2.531206 GAACAGAAAGAGATCGACCGG 58.469 52.381 0.00 0.00 0.00 5.28
234 235 0.818296 ACAGAAAGAGATCGACCGGG 59.182 55.000 6.32 0.00 0.00 5.73
235 236 0.103208 CAGAAAGAGATCGACCGGGG 59.897 60.000 6.32 0.00 0.00 5.73
236 237 0.033405 AGAAAGAGATCGACCGGGGA 60.033 55.000 6.32 2.46 0.00 4.81
237 238 0.386113 GAAAGAGATCGACCGGGGAG 59.614 60.000 6.32 0.00 0.00 4.30
247 248 3.379880 CCGGGGAGGTCGTTACAA 58.620 61.111 0.00 0.00 34.51 2.41
248 249 1.217244 CCGGGGAGGTCGTTACAAG 59.783 63.158 0.00 0.00 34.51 3.16
249 250 1.252904 CCGGGGAGGTCGTTACAAGA 61.253 60.000 0.00 0.00 34.51 3.02
250 251 0.172803 CGGGGAGGTCGTTACAAGAG 59.827 60.000 0.00 0.00 0.00 2.85
251 252 1.553706 GGGGAGGTCGTTACAAGAGA 58.446 55.000 0.00 0.00 0.00 3.10
252 253 2.108970 GGGGAGGTCGTTACAAGAGAT 58.891 52.381 0.00 0.00 0.00 2.75
253 254 3.294214 GGGGAGGTCGTTACAAGAGATA 58.706 50.000 0.00 0.00 0.00 1.98
254 255 3.318557 GGGGAGGTCGTTACAAGAGATAG 59.681 52.174 0.00 0.00 0.00 2.08
255 256 4.205587 GGGAGGTCGTTACAAGAGATAGA 58.794 47.826 0.00 0.00 0.00 1.98
256 257 4.276431 GGGAGGTCGTTACAAGAGATAGAG 59.724 50.000 0.00 0.00 0.00 2.43
257 258 5.124645 GGAGGTCGTTACAAGAGATAGAGA 58.875 45.833 0.00 0.00 0.00 3.10
258 259 5.766174 GGAGGTCGTTACAAGAGATAGAGAT 59.234 44.000 0.00 0.00 0.00 2.75
259 260 6.935771 GGAGGTCGTTACAAGAGATAGAGATA 59.064 42.308 0.00 0.00 0.00 1.98
260 261 7.118680 GGAGGTCGTTACAAGAGATAGAGATAG 59.881 44.444 0.00 0.00 0.00 2.08
261 262 7.737869 AGGTCGTTACAAGAGATAGAGATAGA 58.262 38.462 0.00 0.00 0.00 1.98
262 263 8.380099 AGGTCGTTACAAGAGATAGAGATAGAT 58.620 37.037 0.00 0.00 0.00 1.98
263 264 9.656040 GGTCGTTACAAGAGATAGAGATAGATA 57.344 37.037 0.00 0.00 0.00 1.98
286 287 9.274206 GATACAATTTAAACACCTCTCCTATCC 57.726 37.037 0.00 0.00 0.00 2.59
287 288 6.424032 ACAATTTAAACACCTCTCCTATCCC 58.576 40.000 0.00 0.00 0.00 3.85
288 289 6.217693 ACAATTTAAACACCTCTCCTATCCCT 59.782 38.462 0.00 0.00 0.00 4.20
289 290 7.404980 ACAATTTAAACACCTCTCCTATCCCTA 59.595 37.037 0.00 0.00 0.00 3.53
290 291 8.440771 CAATTTAAACACCTCTCCTATCCCTAT 58.559 37.037 0.00 0.00 0.00 2.57
291 292 9.684702 AATTTAAACACCTCTCCTATCCCTATA 57.315 33.333 0.00 0.00 0.00 1.31
292 293 8.488308 TTTAAACACCTCTCCTATCCCTATAC 57.512 38.462 0.00 0.00 0.00 1.47
293 294 5.681494 AACACCTCTCCTATCCCTATACA 57.319 43.478 0.00 0.00 0.00 2.29
294 295 5.681494 ACACCTCTCCTATCCCTATACAA 57.319 43.478 0.00 0.00 0.00 2.41
295 296 6.234404 ACACCTCTCCTATCCCTATACAAT 57.766 41.667 0.00 0.00 0.00 2.71
296 297 7.358255 ACACCTCTCCTATCCCTATACAATA 57.642 40.000 0.00 0.00 0.00 1.90
297 298 7.776745 ACACCTCTCCTATCCCTATACAATAA 58.223 38.462 0.00 0.00 0.00 1.40
298 299 8.410623 ACACCTCTCCTATCCCTATACAATAAT 58.589 37.037 0.00 0.00 0.00 1.28
299 300 9.273137 CACCTCTCCTATCCCTATACAATAATT 57.727 37.037 0.00 0.00 0.00 1.40
300 301 9.495382 ACCTCTCCTATCCCTATACAATAATTC 57.505 37.037 0.00 0.00 0.00 2.17
301 302 9.722317 CCTCTCCTATCCCTATACAATAATTCT 57.278 37.037 0.00 0.00 0.00 2.40
309 310 9.950496 ATCCCTATACAATAATTCTAACAGCTG 57.050 33.333 13.48 13.48 0.00 4.24
310 311 8.375506 TCCCTATACAATAATTCTAACAGCTGG 58.624 37.037 19.93 0.00 0.00 4.85
311 312 8.157476 CCCTATACAATAATTCTAACAGCTGGT 58.843 37.037 19.93 15.51 0.00 4.00
312 313 8.993121 CCTATACAATAATTCTAACAGCTGGTG 58.007 37.037 16.44 4.56 0.00 4.17
313 314 5.567138 ACAATAATTCTAACAGCTGGTGC 57.433 39.130 16.44 0.00 40.05 5.01
314 315 4.399303 ACAATAATTCTAACAGCTGGTGCC 59.601 41.667 16.44 0.00 40.80 5.01
315 316 2.887151 AATTCTAACAGCTGGTGCCT 57.113 45.000 16.44 0.00 40.80 4.75
316 317 2.887151 ATTCTAACAGCTGGTGCCTT 57.113 45.000 16.44 2.77 40.80 4.35
317 318 4.301072 AATTCTAACAGCTGGTGCCTTA 57.699 40.909 16.44 3.96 40.80 2.69
318 319 3.334583 TTCTAACAGCTGGTGCCTTAG 57.665 47.619 16.44 14.01 40.80 2.18
319 320 2.536066 TCTAACAGCTGGTGCCTTAGA 58.464 47.619 16.44 16.10 40.80 2.10
320 321 2.497675 TCTAACAGCTGGTGCCTTAGAG 59.502 50.000 16.44 1.08 40.80 2.43
321 322 1.059913 AACAGCTGGTGCCTTAGAGT 58.940 50.000 19.93 0.00 40.80 3.24
322 323 1.059913 ACAGCTGGTGCCTTAGAGTT 58.940 50.000 19.93 0.00 40.80 3.01
323 324 1.271054 ACAGCTGGTGCCTTAGAGTTG 60.271 52.381 19.93 0.00 40.80 3.16
324 325 0.322008 AGCTGGTGCCTTAGAGTTGC 60.322 55.000 0.00 0.00 40.80 4.17
325 326 0.606401 GCTGGTGCCTTAGAGTTGCA 60.606 55.000 0.00 0.00 0.00 4.08
326 327 1.952367 GCTGGTGCCTTAGAGTTGCAT 60.952 52.381 0.00 0.00 37.34 3.96
327 328 2.012673 CTGGTGCCTTAGAGTTGCATC 58.987 52.381 0.00 0.00 37.34 3.91
328 329 1.350684 TGGTGCCTTAGAGTTGCATCA 59.649 47.619 0.00 0.00 43.39 3.07
329 330 2.025981 TGGTGCCTTAGAGTTGCATCAT 60.026 45.455 0.00 0.00 40.94 2.45
330 331 3.199727 TGGTGCCTTAGAGTTGCATCATA 59.800 43.478 0.00 0.00 40.94 2.15
331 332 4.141413 TGGTGCCTTAGAGTTGCATCATAT 60.141 41.667 0.00 0.00 40.94 1.78
332 333 5.071653 TGGTGCCTTAGAGTTGCATCATATA 59.928 40.000 0.00 0.00 40.94 0.86
333 334 6.176183 GGTGCCTTAGAGTTGCATCATATAT 58.824 40.000 0.00 0.00 36.16 0.86
334 335 7.038373 TGGTGCCTTAGAGTTGCATCATATATA 60.038 37.037 0.00 0.00 40.94 0.86
335 336 7.278868 GGTGCCTTAGAGTTGCATCATATATAC 59.721 40.741 0.00 0.00 36.16 1.47
336 337 8.037758 GTGCCTTAGAGTTGCATCATATATACT 58.962 37.037 0.00 0.00 37.34 2.12
337 338 9.255029 TGCCTTAGAGTTGCATCATATATACTA 57.745 33.333 0.00 0.00 0.00 1.82
338 339 9.743057 GCCTTAGAGTTGCATCATATATACTAG 57.257 37.037 0.00 0.00 0.00 2.57
339 340 9.743057 CCTTAGAGTTGCATCATATATACTAGC 57.257 37.037 0.00 0.00 0.00 3.42
348 349 9.219603 TGCATCATATATACTAGCTTTTTGTCC 57.780 33.333 0.00 0.00 0.00 4.02
349 350 9.219603 GCATCATATATACTAGCTTTTTGTCCA 57.780 33.333 0.00 0.00 0.00 4.02
390 391 4.042187 AGCAGGAAGTGGATAGTCTGTTTT 59.958 41.667 0.00 0.00 0.00 2.43
392 393 5.335191 GCAGGAAGTGGATAGTCTGTTTTTG 60.335 44.000 0.00 0.00 0.00 2.44
394 395 4.082733 GGAAGTGGATAGTCTGTTTTTGCC 60.083 45.833 0.00 0.00 0.00 4.52
395 396 4.373156 AGTGGATAGTCTGTTTTTGCCT 57.627 40.909 0.00 0.00 0.00 4.75
411 412 8.571336 TGTTTTTGCCTTTTCTTTTTCAAATCA 58.429 25.926 0.00 0.00 0.00 2.57
412 413 9.571810 GTTTTTGCCTTTTCTTTTTCAAATCAT 57.428 25.926 0.00 0.00 0.00 2.45
413 414 9.786105 TTTTTGCCTTTTCTTTTTCAAATCATC 57.214 25.926 0.00 0.00 0.00 2.92
576 578 3.512680 CGGCGACTTCAGATTCTAAACT 58.487 45.455 0.00 0.00 0.00 2.66
662 702 6.902771 TCTAATCTGCTATGAAGTACTCCC 57.097 41.667 0.00 0.00 0.00 4.30
663 703 6.615617 TCTAATCTGCTATGAAGTACTCCCT 58.384 40.000 0.00 0.00 0.00 4.20
664 704 5.799827 AATCTGCTATGAAGTACTCCCTC 57.200 43.478 0.00 0.00 0.00 4.30
665 705 3.567397 TCTGCTATGAAGTACTCCCTCC 58.433 50.000 0.00 0.00 0.00 4.30
666 706 2.294791 CTGCTATGAAGTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
667 707 2.308690 GCTATGAAGTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
668 708 2.694109 GCTATGAAGTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
669 709 3.243468 GCTATGAAGTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
670 710 1.553706 TGAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
671 711 1.076677 TGAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
672 712 2.309755 TGAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
673 713 3.245371 TGAAGTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
674 714 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
675 715 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
676 716 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
677 717 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
678 718 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
679 719 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
680 720 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
681 721 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
682 722 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
683 723 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
684 724 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
685 725 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
686 726 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
714 754 9.221933 AGAGATTTCACTATAGACTACATACGG 57.778 37.037 6.78 0.00 0.00 4.02
715 755 9.217278 GAGATTTCACTATAGACTACATACGGA 57.783 37.037 6.78 0.00 0.00 4.69
716 756 9.221933 AGATTTCACTATAGACTACATACGGAG 57.778 37.037 6.78 0.00 0.00 4.63
717 757 6.798315 TTCACTATAGACTACATACGGAGC 57.202 41.667 6.78 0.00 0.00 4.70
718 758 5.861727 TCACTATAGACTACATACGGAGCA 58.138 41.667 6.78 0.00 0.00 4.26
719 759 6.293698 TCACTATAGACTACATACGGAGCAA 58.706 40.000 6.78 0.00 0.00 3.91
720 760 6.769341 TCACTATAGACTACATACGGAGCAAA 59.231 38.462 6.78 0.00 0.00 3.68
721 761 7.283807 TCACTATAGACTACATACGGAGCAAAA 59.716 37.037 6.78 0.00 0.00 2.44
722 762 8.082852 CACTATAGACTACATACGGAGCAAAAT 58.917 37.037 6.78 0.00 0.00 1.82
723 763 8.082852 ACTATAGACTACATACGGAGCAAAATG 58.917 37.037 6.78 0.00 0.00 2.32
724 764 5.339008 AGACTACATACGGAGCAAAATGA 57.661 39.130 0.00 0.00 0.00 2.57
725 765 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
726 766 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
727 767 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
728 768 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
729 769 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
730 770 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
731 771 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
732 772 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
733 773 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
734 774 3.941483 CGGAGCAAAATGAGTGAACCTAT 59.059 43.478 0.00 0.00 0.00 2.57
735 775 5.116180 CGGAGCAAAATGAGTGAACCTATA 58.884 41.667 0.00 0.00 0.00 1.31
736 776 5.006746 CGGAGCAAAATGAGTGAACCTATAC 59.993 44.000 0.00 0.00 0.00 1.47
737 777 6.116126 GGAGCAAAATGAGTGAACCTATACT 58.884 40.000 0.00 0.00 0.00 2.12
738 778 6.258947 GGAGCAAAATGAGTGAACCTATACTC 59.741 42.308 0.00 0.00 42.77 2.59
739 779 6.951971 AGCAAAATGAGTGAACCTATACTCT 58.048 36.000 0.00 0.00 42.86 3.24
740 780 8.079211 AGCAAAATGAGTGAACCTATACTCTA 57.921 34.615 0.00 0.00 42.86 2.43
741 781 8.540388 AGCAAAATGAGTGAACCTATACTCTAA 58.460 33.333 0.00 0.00 42.86 2.10
742 782 9.162764 GCAAAATGAGTGAACCTATACTCTAAA 57.837 33.333 0.00 0.00 42.86 1.85
747 787 7.759465 TGAGTGAACCTATACTCTAAAAGACG 58.241 38.462 0.00 0.00 42.86 4.18
748 788 7.392673 TGAGTGAACCTATACTCTAAAAGACGT 59.607 37.037 0.00 0.00 42.86 4.34
749 789 7.760437 AGTGAACCTATACTCTAAAAGACGTC 58.240 38.462 7.70 7.70 0.00 4.34
750 790 7.611079 AGTGAACCTATACTCTAAAAGACGTCT 59.389 37.037 13.58 13.58 0.00 4.18
751 791 8.887717 GTGAACCTATACTCTAAAAGACGTCTA 58.112 37.037 20.39 1.84 0.00 2.59
752 792 9.624373 TGAACCTATACTCTAAAAGACGTCTAT 57.376 33.333 20.39 13.54 0.00 1.98
761 801 8.719648 ACTCTAAAAGACGTCTATATACATCCG 58.280 37.037 20.39 3.58 0.00 4.18
762 802 8.837788 TCTAAAAGACGTCTATATACATCCGA 57.162 34.615 20.39 4.61 0.00 4.55
763 803 9.276590 TCTAAAAGACGTCTATATACATCCGAA 57.723 33.333 20.39 0.00 0.00 4.30
765 805 8.744008 AAAAGACGTCTATATACATCCGAATG 57.256 34.615 20.39 0.00 38.93 2.67
779 819 7.441890 ACATCCGAATGTAGTCTCTATAGTG 57.558 40.000 0.00 0.00 44.38 2.74
780 820 7.225011 ACATCCGAATGTAGTCTCTATAGTGA 58.775 38.462 0.00 0.00 44.38 3.41
781 821 7.720074 ACATCCGAATGTAGTCTCTATAGTGAA 59.280 37.037 6.09 0.00 44.38 3.18
782 822 8.568794 CATCCGAATGTAGTCTCTATAGTGAAA 58.431 37.037 6.09 0.00 0.00 2.69
783 823 8.693120 TCCGAATGTAGTCTCTATAGTGAAAT 57.307 34.615 6.09 1.90 0.00 2.17
784 824 8.568794 TCCGAATGTAGTCTCTATAGTGAAATG 58.431 37.037 6.09 0.00 0.00 2.32
785 825 8.353684 CCGAATGTAGTCTCTATAGTGAAATGT 58.646 37.037 6.09 0.00 0.00 2.71
786 826 9.388346 CGAATGTAGTCTCTATAGTGAAATGTC 57.612 37.037 6.09 0.00 0.00 3.06
815 855 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
816 856 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
817 857 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
818 858 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
819 859 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
820 860 9.860393 ACTTATATTTAGGAATGGAGGGAGTAT 57.140 33.333 0.00 0.00 0.00 2.12
846 888 5.009631 ACACACACCACATGCTACATTATT 58.990 37.500 0.00 0.00 0.00 1.40
895 941 3.534056 GCAGGCCATGGCATCCAC 61.534 66.667 36.56 19.69 44.11 4.02
896 942 3.214123 CAGGCCATGGCATCCACG 61.214 66.667 36.56 15.49 44.11 4.94
897 943 3.410628 AGGCCATGGCATCCACGA 61.411 61.111 36.56 0.00 44.11 4.35
898 944 2.440065 GGCCATGGCATCCACGAA 60.440 61.111 36.56 0.00 44.11 3.85
899 945 2.484062 GGCCATGGCATCCACGAAG 61.484 63.158 36.56 0.00 44.11 3.79
900 946 1.451927 GCCATGGCATCCACGAAGA 60.452 57.895 32.08 0.00 41.49 2.87
967 1014 1.942657 CCGGCAAATATGACTGGTGAG 59.057 52.381 0.00 0.00 29.70 3.51
1007 1065 0.963856 CACACATCTGCCATGGTGCT 60.964 55.000 14.67 0.00 34.69 4.40
1022 1080 1.614051 GGTGCTTCATCCATCCACACA 60.614 52.381 0.00 0.00 0.00 3.72
1028 1090 1.914798 TCATCCATCCACACATCCACA 59.085 47.619 0.00 0.00 0.00 4.17
1051 1113 0.109735 CTCTGCTCTACGTTCGTGCA 60.110 55.000 8.14 3.66 0.00 4.57
1098 1167 4.563061 GACGTAGCACCGGGAAAATATAT 58.437 43.478 6.32 0.00 0.00 0.86
1822 2057 1.854126 CGCTTTCAAGTGCAAACCAAG 59.146 47.619 0.00 0.00 0.00 3.61
1899 2134 2.607811 TGGTCATCCAATCGCCTCT 58.392 52.632 0.00 0.00 41.25 3.69
2501 2833 3.147629 GAGCTATACCGCTAGAGTTGGA 58.852 50.000 0.00 0.00 41.08 3.53
2748 3305 1.197036 GAACTCGCCCTTAGCAACAAC 59.803 52.381 0.00 0.00 44.04 3.32
2859 3416 1.667724 CTGCCATTAGAGTTTGGAGCG 59.332 52.381 0.00 0.00 34.81 5.03
3035 3592 2.561419 TCCTCCTCTTAAGTCACAACCG 59.439 50.000 1.63 0.00 0.00 4.44
3063 3620 4.469586 TCTGGCAAGTTACCATCATCACTA 59.530 41.667 0.00 0.00 36.36 2.74
3084 3641 9.908747 TCACTAAAGAACTATAAGAGTCTAGCT 57.091 33.333 0.00 0.00 37.44 3.32
3199 3756 4.310022 TTCTTTTGTGGGGATATTCCGT 57.690 40.909 0.00 0.00 37.43 4.69
3465 4022 6.262496 TGGATCTATCACTCAACTACCTAACG 59.738 42.308 0.00 0.00 0.00 3.18
3622 4179 2.043526 AGCCTTTCTGGTGAAATCCCAT 59.956 45.455 0.00 0.00 40.85 4.00
3636 4193 0.322816 TCCCATCAAGCTTGGCAGAC 60.323 55.000 25.73 0.00 32.60 3.51
4099 5741 5.871396 TTCACCCTATACTGAATCTGGAC 57.129 43.478 0.00 0.00 0.00 4.02
4158 5800 8.803235 TGCTAGTATGTGTTCTTTTCTCTCTAA 58.197 33.333 0.00 0.00 0.00 2.10
4198 5847 7.880713 TGAACTTTGGTCTAATGCATGTAACTA 59.119 33.333 0.00 0.00 0.00 2.24
4295 5944 9.738832 GTGTTAATGGTTTGTAGTGTGTAAATT 57.261 29.630 0.00 0.00 0.00 1.82
4300 5949 9.921637 AATGGTTTGTAGTGTGTAAATTAATGG 57.078 29.630 0.00 0.00 0.00 3.16
4391 8946 8.364894 TCAACTACTTATTGAACTAGCACAAGA 58.635 33.333 7.92 1.70 33.16 3.02
4528 9084 3.066621 TGATTCTTGCAATGGCGATTACC 59.933 43.478 0.00 0.00 45.35 2.85
4595 9158 2.034558 ACCACAAGAATTTGACGCAAGG 59.965 45.455 0.00 0.00 38.74 3.61
4680 9244 0.503961 GCAAACAACAATCGCACTGC 59.496 50.000 0.00 0.00 0.00 4.40
4682 9246 2.191802 CAAACAACAATCGCACTGCAA 58.808 42.857 1.11 0.00 0.00 4.08
4689 9253 3.273434 ACAATCGCACTGCAAGATACAT 58.727 40.909 1.11 0.00 37.43 2.29
4719 9283 1.136305 GAGTATCGGCACCAGCTACAA 59.864 52.381 0.00 0.00 41.70 2.41
4806 9371 2.887152 GTCACTCAAGGAAATGCACCTT 59.113 45.455 1.30 1.30 47.00 3.50
4822 9387 1.589196 CTTACTACCGCTCTGCCGC 60.589 63.158 0.00 0.00 0.00 6.53
4982 9551 0.179225 GACAAGTGCAATGGTACGCG 60.179 55.000 3.53 3.53 34.50 6.01
4987 9557 1.196808 AGTGCAATGGTACGCGAAAAG 59.803 47.619 15.93 0.00 34.50 2.27
4995 9565 1.198178 GGTACGCGAAAAGAATTGCCA 59.802 47.619 15.93 0.00 0.00 4.92
5001 9571 4.031028 CGCGAAAAGAATTGCCATCTAAG 58.969 43.478 0.00 0.00 0.00 2.18
5020 9590 7.323049 TCTAAGATCGAAGAACTGGTCTAAG 57.677 40.000 0.00 0.00 39.25 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.899239 CTCCGCCTCCATGTCGCC 62.899 72.222 0.00 0.00 0.00 5.54
2 3 4.899239 CCTCCGCCTCCATGTCGC 62.899 72.222 0.00 0.00 0.00 5.19
3 4 3.461773 ACCTCCGCCTCCATGTCG 61.462 66.667 0.00 0.00 0.00 4.35
4 5 2.187946 CACCTCCGCCTCCATGTC 59.812 66.667 0.00 0.00 0.00 3.06
5 6 3.402681 CCACCTCCGCCTCCATGT 61.403 66.667 0.00 0.00 0.00 3.21
10 11 4.083862 GTCCACCACCTCCGCCTC 62.084 72.222 0.00 0.00 0.00 4.70
11 12 4.954118 TGTCCACCACCTCCGCCT 62.954 66.667 0.00 0.00 0.00 5.52
12 13 3.717294 ATGTCCACCACCTCCGCC 61.717 66.667 0.00 0.00 0.00 6.13
13 14 2.436646 CATGTCCACCACCTCCGC 60.437 66.667 0.00 0.00 0.00 5.54
14 15 2.268920 CCATGTCCACCACCTCCG 59.731 66.667 0.00 0.00 0.00 4.63
15 16 2.044946 GCCATGTCCACCACCTCC 60.045 66.667 0.00 0.00 0.00 4.30
16 17 1.078143 GAGCCATGTCCACCACCTC 60.078 63.158 0.00 0.00 0.00 3.85
17 18 2.959484 CGAGCCATGTCCACCACCT 61.959 63.158 0.00 0.00 0.00 4.00
18 19 2.436646 CGAGCCATGTCCACCACC 60.437 66.667 0.00 0.00 0.00 4.61
19 20 2.436646 CCGAGCCATGTCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
20 21 2.927856 ACCGAGCCATGTCCACCA 60.928 61.111 0.00 0.00 0.00 4.17
21 22 2.125106 GACCGAGCCATGTCCACC 60.125 66.667 0.00 0.00 0.00 4.61
22 23 2.509336 CGACCGAGCCATGTCCAC 60.509 66.667 0.00 0.00 0.00 4.02
23 24 4.451150 GCGACCGAGCCATGTCCA 62.451 66.667 0.00 0.00 0.00 4.02
25 26 3.982372 TTCGCGACCGAGCCATGTC 62.982 63.158 9.15 0.00 45.35 3.06
26 27 4.063967 TTCGCGACCGAGCCATGT 62.064 61.111 9.15 0.00 45.35 3.21
27 28 3.554692 GTTCGCGACCGAGCCATG 61.555 66.667 9.15 0.00 45.35 3.66
31 32 4.465512 TACCGTTCGCGACCGAGC 62.466 66.667 28.08 5.73 45.35 5.03
32 33 2.277120 CTACCGTTCGCGACCGAG 60.277 66.667 28.08 18.81 45.35 4.63
33 34 4.465512 GCTACCGTTCGCGACCGA 62.466 66.667 28.08 7.50 44.71 4.69
34 35 2.961526 CTAGCTACCGTTCGCGACCG 62.962 65.000 19.79 19.79 44.71 4.79
35 36 1.298190 CTAGCTACCGTTCGCGACC 60.298 63.158 9.15 0.00 44.71 4.79
36 37 0.307146 ATCTAGCTACCGTTCGCGAC 59.693 55.000 9.15 3.09 44.71 5.19
37 38 0.306840 CATCTAGCTACCGTTCGCGA 59.693 55.000 3.71 3.71 44.71 5.87
38 39 1.269444 GCATCTAGCTACCGTTCGCG 61.269 60.000 0.00 0.00 41.15 5.87
39 40 1.269444 CGCATCTAGCTACCGTTCGC 61.269 60.000 0.00 0.00 42.61 4.70
40 41 0.306840 TCGCATCTAGCTACCGTTCG 59.693 55.000 0.00 0.00 42.61 3.95
41 42 2.226912 AGATCGCATCTAGCTACCGTTC 59.773 50.000 0.00 0.00 42.61 3.95
42 43 2.226912 GAGATCGCATCTAGCTACCGTT 59.773 50.000 0.00 0.00 40.38 4.44
43 44 1.807742 GAGATCGCATCTAGCTACCGT 59.192 52.381 0.00 0.00 40.38 4.83
44 45 2.080693 AGAGATCGCATCTAGCTACCG 58.919 52.381 0.00 0.00 40.38 4.02
45 46 3.343617 AGAGAGATCGCATCTAGCTACC 58.656 50.000 0.00 0.00 40.38 3.18
46 47 4.454161 TCAAGAGAGATCGCATCTAGCTAC 59.546 45.833 0.00 0.00 40.38 3.58
47 48 4.646572 TCAAGAGAGATCGCATCTAGCTA 58.353 43.478 0.00 0.00 40.38 3.32
48 49 3.485394 TCAAGAGAGATCGCATCTAGCT 58.515 45.455 0.00 0.00 40.38 3.32
49 50 3.913548 TCAAGAGAGATCGCATCTAGC 57.086 47.619 0.00 0.00 40.38 3.42
58 59 6.491062 TCTTCCTCATCAGATCAAGAGAGATC 59.509 42.308 0.00 0.00 43.73 2.75
59 60 6.375418 TCTTCCTCATCAGATCAAGAGAGAT 58.625 40.000 0.00 0.00 0.00 2.75
60 61 5.764432 TCTTCCTCATCAGATCAAGAGAGA 58.236 41.667 0.00 0.00 0.00 3.10
61 62 5.010314 CCTCTTCCTCATCAGATCAAGAGAG 59.990 48.000 13.81 7.29 39.52 3.20
62 63 4.894705 CCTCTTCCTCATCAGATCAAGAGA 59.105 45.833 13.81 0.00 39.52 3.10
63 64 4.501915 GCCTCTTCCTCATCAGATCAAGAG 60.502 50.000 7.76 7.76 38.24 2.85
64 65 3.387374 GCCTCTTCCTCATCAGATCAAGA 59.613 47.826 0.00 0.00 0.00 3.02
65 66 3.388676 AGCCTCTTCCTCATCAGATCAAG 59.611 47.826 0.00 0.00 0.00 3.02
66 67 3.382278 AGCCTCTTCCTCATCAGATCAA 58.618 45.455 0.00 0.00 0.00 2.57
67 68 2.964464 GAGCCTCTTCCTCATCAGATCA 59.036 50.000 0.00 0.00 0.00 2.92
68 69 3.006110 CAGAGCCTCTTCCTCATCAGATC 59.994 52.174 0.00 0.00 0.00 2.75
69 70 2.967201 CAGAGCCTCTTCCTCATCAGAT 59.033 50.000 0.00 0.00 0.00 2.90
70 71 2.292126 ACAGAGCCTCTTCCTCATCAGA 60.292 50.000 0.00 0.00 0.00 3.27
71 72 2.109774 ACAGAGCCTCTTCCTCATCAG 58.890 52.381 0.00 0.00 0.00 2.90
72 73 2.244486 ACAGAGCCTCTTCCTCATCA 57.756 50.000 0.00 0.00 0.00 3.07
73 74 3.181470 GGTAACAGAGCCTCTTCCTCATC 60.181 52.174 0.00 0.00 0.00 2.92
74 75 2.769095 GGTAACAGAGCCTCTTCCTCAT 59.231 50.000 0.00 0.00 0.00 2.90
75 76 2.180276 GGTAACAGAGCCTCTTCCTCA 58.820 52.381 0.00 0.00 0.00 3.86
76 77 2.180276 TGGTAACAGAGCCTCTTCCTC 58.820 52.381 0.00 0.00 46.17 3.71
77 78 2.327325 TGGTAACAGAGCCTCTTCCT 57.673 50.000 0.00 0.00 46.17 3.36
90 91 7.758076 GCTTCCCAAACTATTTTACATGGTAAC 59.242 37.037 0.00 0.00 0.00 2.50
91 92 7.362229 CGCTTCCCAAACTATTTTACATGGTAA 60.362 37.037 0.00 0.00 0.00 2.85
92 93 6.094325 CGCTTCCCAAACTATTTTACATGGTA 59.906 38.462 0.00 0.00 0.00 3.25
93 94 5.105917 CGCTTCCCAAACTATTTTACATGGT 60.106 40.000 0.00 0.00 0.00 3.55
94 95 5.105917 ACGCTTCCCAAACTATTTTACATGG 60.106 40.000 0.00 0.00 0.00 3.66
95 96 5.949735 ACGCTTCCCAAACTATTTTACATG 58.050 37.500 0.00 0.00 0.00 3.21
96 97 7.107542 TCTACGCTTCCCAAACTATTTTACAT 58.892 34.615 0.00 0.00 0.00 2.29
97 98 6.465948 TCTACGCTTCCCAAACTATTTTACA 58.534 36.000 0.00 0.00 0.00 2.41
98 99 6.973229 TCTACGCTTCCCAAACTATTTTAC 57.027 37.500 0.00 0.00 0.00 2.01
99 100 6.372381 GGTTCTACGCTTCCCAAACTATTTTA 59.628 38.462 0.00 0.00 0.00 1.52
100 101 5.182570 GGTTCTACGCTTCCCAAACTATTTT 59.817 40.000 0.00 0.00 0.00 1.82
101 102 4.698780 GGTTCTACGCTTCCCAAACTATTT 59.301 41.667 0.00 0.00 0.00 1.40
102 103 4.259356 GGTTCTACGCTTCCCAAACTATT 58.741 43.478 0.00 0.00 0.00 1.73
103 104 3.262405 TGGTTCTACGCTTCCCAAACTAT 59.738 43.478 0.00 0.00 0.00 2.12
104 105 2.633967 TGGTTCTACGCTTCCCAAACTA 59.366 45.455 0.00 0.00 0.00 2.24
105 106 1.418637 TGGTTCTACGCTTCCCAAACT 59.581 47.619 0.00 0.00 0.00 2.66
106 107 1.886886 TGGTTCTACGCTTCCCAAAC 58.113 50.000 0.00 0.00 0.00 2.93
107 108 2.871096 ATGGTTCTACGCTTCCCAAA 57.129 45.000 0.00 0.00 0.00 3.28
108 109 2.817258 CAAATGGTTCTACGCTTCCCAA 59.183 45.455 0.00 0.00 0.00 4.12
109 110 2.224670 ACAAATGGTTCTACGCTTCCCA 60.225 45.455 0.00 0.00 0.00 4.37
110 111 2.418976 GACAAATGGTTCTACGCTTCCC 59.581 50.000 0.00 0.00 0.00 3.97
111 112 3.335579 AGACAAATGGTTCTACGCTTCC 58.664 45.455 0.00 0.00 0.00 3.46
112 113 3.060895 CGAGACAAATGGTTCTACGCTTC 59.939 47.826 0.00 0.00 0.00 3.86
113 114 2.993899 CGAGACAAATGGTTCTACGCTT 59.006 45.455 0.00 0.00 0.00 4.68
114 115 2.607187 CGAGACAAATGGTTCTACGCT 58.393 47.619 0.00 0.00 0.00 5.07
115 116 1.659098 CCGAGACAAATGGTTCTACGC 59.341 52.381 0.00 0.00 0.00 4.42
116 117 2.268298 CCCGAGACAAATGGTTCTACG 58.732 52.381 0.00 0.00 0.00 3.51
117 118 2.007608 GCCCGAGACAAATGGTTCTAC 58.992 52.381 0.00 0.00 0.00 2.59
118 119 1.065709 GGCCCGAGACAAATGGTTCTA 60.066 52.381 0.00 0.00 0.00 2.10
119 120 0.322546 GGCCCGAGACAAATGGTTCT 60.323 55.000 0.00 0.00 0.00 3.01
120 121 1.644786 CGGCCCGAGACAAATGGTTC 61.645 60.000 0.00 0.00 0.00 3.62
121 122 1.674322 CGGCCCGAGACAAATGGTT 60.674 57.895 0.00 0.00 0.00 3.67
122 123 2.046314 CGGCCCGAGACAAATGGT 60.046 61.111 0.00 0.00 0.00 3.55
123 124 3.508840 GCGGCCCGAGACAAATGG 61.509 66.667 7.68 0.00 0.00 3.16
124 125 3.864686 CGCGGCCCGAGACAAATG 61.865 66.667 7.68 0.00 40.02 2.32
125 126 3.894547 AACGCGGCCCGAGACAAAT 62.895 57.895 15.49 0.00 41.02 2.32
126 127 4.612412 AACGCGGCCCGAGACAAA 62.612 61.111 15.49 0.00 41.02 2.83
129 130 2.340453 TATACAACGCGGCCCGAGAC 62.340 60.000 15.49 0.00 41.02 3.36
130 131 1.457823 ATATACAACGCGGCCCGAGA 61.458 55.000 15.49 0.00 41.02 4.04
131 132 0.241749 TATATACAACGCGGCCCGAG 59.758 55.000 18.74 6.22 41.02 4.63
132 133 0.889994 ATATATACAACGCGGCCCGA 59.110 50.000 18.74 0.00 41.02 5.14
133 134 1.392168 CAATATATACAACGCGGCCCG 59.608 52.381 12.47 11.48 44.21 6.13
134 135 2.671396 CTCAATATATACAACGCGGCCC 59.329 50.000 12.47 0.00 0.00 5.80
135 136 2.671396 CCTCAATATATACAACGCGGCC 59.329 50.000 12.47 0.00 0.00 6.13
136 137 2.093783 GCCTCAATATATACAACGCGGC 59.906 50.000 12.47 0.00 0.00 6.53
137 138 3.322369 TGCCTCAATATATACAACGCGG 58.678 45.455 12.47 0.00 0.00 6.46
138 139 4.983215 TTGCCTCAATATATACAACGCG 57.017 40.909 3.53 3.53 0.00 6.01
139 140 5.147162 GCTTTGCCTCAATATATACAACGC 58.853 41.667 0.00 0.00 0.00 4.84
140 141 5.689819 GGCTTTGCCTCAATATATACAACG 58.310 41.667 0.73 0.00 46.69 4.10
156 157 0.032540 CTTGTCCACCAAGGCTTTGC 59.967 55.000 2.41 0.00 45.70 3.68
164 165 3.042682 TCCTCTGTAACTTGTCCACCAA 58.957 45.455 0.00 0.00 0.00 3.67
165 166 2.632996 CTCCTCTGTAACTTGTCCACCA 59.367 50.000 0.00 0.00 0.00 4.17
166 167 2.897969 TCTCCTCTGTAACTTGTCCACC 59.102 50.000 0.00 0.00 0.00 4.61
167 168 4.281182 TCTTCTCCTCTGTAACTTGTCCAC 59.719 45.833 0.00 0.00 0.00 4.02
168 169 4.480115 TCTTCTCCTCTGTAACTTGTCCA 58.520 43.478 0.00 0.00 0.00 4.02
169 170 5.656480 GATCTTCTCCTCTGTAACTTGTCC 58.344 45.833 0.00 0.00 0.00 4.02
170 171 5.124138 TCGATCTTCTCCTCTGTAACTTGTC 59.876 44.000 0.00 0.00 0.00 3.18
171 172 5.010933 TCGATCTTCTCCTCTGTAACTTGT 58.989 41.667 0.00 0.00 0.00 3.16
172 173 5.124776 AGTCGATCTTCTCCTCTGTAACTTG 59.875 44.000 0.00 0.00 0.00 3.16
173 174 5.258051 AGTCGATCTTCTCCTCTGTAACTT 58.742 41.667 0.00 0.00 0.00 2.66
174 175 4.850680 AGTCGATCTTCTCCTCTGTAACT 58.149 43.478 0.00 0.00 0.00 2.24
175 176 5.237779 CCTAGTCGATCTTCTCCTCTGTAAC 59.762 48.000 0.00 0.00 0.00 2.50
176 177 5.369833 CCTAGTCGATCTTCTCCTCTGTAA 58.630 45.833 0.00 0.00 0.00 2.41
177 178 4.202377 CCCTAGTCGATCTTCTCCTCTGTA 60.202 50.000 0.00 0.00 0.00 2.74
178 179 3.434453 CCCTAGTCGATCTTCTCCTCTGT 60.434 52.174 0.00 0.00 0.00 3.41
179 180 3.146066 CCCTAGTCGATCTTCTCCTCTG 58.854 54.545 0.00 0.00 0.00 3.35
180 181 3.050089 TCCCTAGTCGATCTTCTCCTCT 58.950 50.000 0.00 0.00 0.00 3.69
181 182 3.071892 TCTCCCTAGTCGATCTTCTCCTC 59.928 52.174 0.00 0.00 0.00 3.71
182 183 3.050089 TCTCCCTAGTCGATCTTCTCCT 58.950 50.000 0.00 0.00 0.00 3.69
183 184 3.071892 TCTCTCCCTAGTCGATCTTCTCC 59.928 52.174 0.00 0.00 0.00 3.71
184 185 4.345859 TCTCTCCCTAGTCGATCTTCTC 57.654 50.000 0.00 0.00 0.00 2.87
185 186 4.993705 ATCTCTCCCTAGTCGATCTTCT 57.006 45.455 0.00 0.00 0.00 2.85
186 187 5.048991 GTCAATCTCTCCCTAGTCGATCTTC 60.049 48.000 0.00 0.00 0.00 2.87
187 188 4.825085 GTCAATCTCTCCCTAGTCGATCTT 59.175 45.833 0.00 0.00 0.00 2.40
188 189 4.394729 GTCAATCTCTCCCTAGTCGATCT 58.605 47.826 0.00 0.00 0.00 2.75
189 190 3.504520 GGTCAATCTCTCCCTAGTCGATC 59.495 52.174 0.00 0.00 0.00 3.69
190 191 3.492337 GGTCAATCTCTCCCTAGTCGAT 58.508 50.000 0.00 0.00 0.00 3.59
191 192 2.745482 CGGTCAATCTCTCCCTAGTCGA 60.745 54.545 0.00 0.00 0.00 4.20
192 193 1.604755 CGGTCAATCTCTCCCTAGTCG 59.395 57.143 0.00 0.00 0.00 4.18
193 194 1.957877 CCGGTCAATCTCTCCCTAGTC 59.042 57.143 0.00 0.00 0.00 2.59
194 195 1.569548 TCCGGTCAATCTCTCCCTAGT 59.430 52.381 0.00 0.00 0.00 2.57
195 196 2.362717 GTTCCGGTCAATCTCTCCCTAG 59.637 54.545 0.00 0.00 0.00 3.02
196 197 2.291996 TGTTCCGGTCAATCTCTCCCTA 60.292 50.000 0.00 0.00 0.00 3.53
197 198 1.196012 GTTCCGGTCAATCTCTCCCT 58.804 55.000 0.00 0.00 0.00 4.20
198 199 0.902531 TGTTCCGGTCAATCTCTCCC 59.097 55.000 0.00 0.00 0.00 4.30
199 200 1.825474 TCTGTTCCGGTCAATCTCTCC 59.175 52.381 0.00 0.00 0.00 3.71
200 201 3.594603 TTCTGTTCCGGTCAATCTCTC 57.405 47.619 0.00 0.00 0.00 3.20
201 202 3.578716 TCTTTCTGTTCCGGTCAATCTCT 59.421 43.478 0.00 0.00 0.00 3.10
202 203 3.926616 TCTTTCTGTTCCGGTCAATCTC 58.073 45.455 0.00 0.00 0.00 2.75
203 204 3.578716 TCTCTTTCTGTTCCGGTCAATCT 59.421 43.478 0.00 0.00 0.00 2.40
204 205 3.926616 TCTCTTTCTGTTCCGGTCAATC 58.073 45.455 0.00 0.00 0.00 2.67
205 206 4.508662 GATCTCTTTCTGTTCCGGTCAAT 58.491 43.478 0.00 0.00 0.00 2.57
206 207 3.614150 CGATCTCTTTCTGTTCCGGTCAA 60.614 47.826 0.00 0.00 0.00 3.18
207 208 2.094700 CGATCTCTTTCTGTTCCGGTCA 60.095 50.000 0.00 1.24 0.00 4.02
208 209 2.163815 TCGATCTCTTTCTGTTCCGGTC 59.836 50.000 0.00 0.00 0.00 4.79
209 210 2.094649 GTCGATCTCTTTCTGTTCCGGT 60.095 50.000 0.00 0.00 0.00 5.28
210 211 2.531206 GTCGATCTCTTTCTGTTCCGG 58.469 52.381 0.00 0.00 0.00 5.14
211 212 2.531206 GGTCGATCTCTTTCTGTTCCG 58.469 52.381 0.00 0.00 0.00 4.30
212 213 2.531206 CGGTCGATCTCTTTCTGTTCC 58.469 52.381 0.00 0.00 0.00 3.62
213 214 2.531206 CCGGTCGATCTCTTTCTGTTC 58.469 52.381 0.00 0.00 0.00 3.18
214 215 1.204941 CCCGGTCGATCTCTTTCTGTT 59.795 52.381 0.00 0.00 0.00 3.16
215 216 0.818296 CCCGGTCGATCTCTTTCTGT 59.182 55.000 0.00 0.00 0.00 3.41
216 217 0.103208 CCCCGGTCGATCTCTTTCTG 59.897 60.000 0.00 0.00 0.00 3.02
217 218 0.033405 TCCCCGGTCGATCTCTTTCT 60.033 55.000 0.00 0.00 0.00 2.52
218 219 0.386113 CTCCCCGGTCGATCTCTTTC 59.614 60.000 0.00 0.00 0.00 2.62
219 220 1.043673 CCTCCCCGGTCGATCTCTTT 61.044 60.000 0.00 0.00 0.00 2.52
220 221 1.455959 CCTCCCCGGTCGATCTCTT 60.456 63.158 0.00 0.00 0.00 2.85
221 222 2.196229 CCTCCCCGGTCGATCTCT 59.804 66.667 0.00 0.00 0.00 3.10
222 223 2.123812 ACCTCCCCGGTCGATCTC 60.124 66.667 0.00 0.00 44.93 2.75
230 231 1.217244 CTTGTAACGACCTCCCCGG 59.783 63.158 0.00 0.00 39.35 5.73
231 232 0.172803 CTCTTGTAACGACCTCCCCG 59.827 60.000 0.00 0.00 0.00 5.73
232 233 1.553706 TCTCTTGTAACGACCTCCCC 58.446 55.000 0.00 0.00 0.00 4.81
233 234 4.205587 TCTATCTCTTGTAACGACCTCCC 58.794 47.826 0.00 0.00 0.00 4.30
234 235 5.124645 TCTCTATCTCTTGTAACGACCTCC 58.875 45.833 0.00 0.00 0.00 4.30
235 236 6.870971 ATCTCTATCTCTTGTAACGACCTC 57.129 41.667 0.00 0.00 0.00 3.85
236 237 7.737869 TCTATCTCTATCTCTTGTAACGACCT 58.262 38.462 0.00 0.00 0.00 3.85
237 238 7.966246 TCTATCTCTATCTCTTGTAACGACC 57.034 40.000 0.00 0.00 0.00 4.79
260 261 9.274206 GGATAGGAGAGGTGTTTAAATTGTATC 57.726 37.037 0.00 0.00 0.00 2.24
261 262 8.218488 GGGATAGGAGAGGTGTTTAAATTGTAT 58.782 37.037 0.00 0.00 0.00 2.29
262 263 7.404980 AGGGATAGGAGAGGTGTTTAAATTGTA 59.595 37.037 0.00 0.00 0.00 2.41
263 264 6.217693 AGGGATAGGAGAGGTGTTTAAATTGT 59.782 38.462 0.00 0.00 0.00 2.71
264 265 6.663734 AGGGATAGGAGAGGTGTTTAAATTG 58.336 40.000 0.00 0.00 0.00 2.32
265 266 6.910259 AGGGATAGGAGAGGTGTTTAAATT 57.090 37.500 0.00 0.00 0.00 1.82
266 267 9.102453 GTATAGGGATAGGAGAGGTGTTTAAAT 57.898 37.037 0.00 0.00 0.00 1.40
267 268 8.069356 TGTATAGGGATAGGAGAGGTGTTTAAA 58.931 37.037 0.00 0.00 0.00 1.52
268 269 7.598248 TGTATAGGGATAGGAGAGGTGTTTAA 58.402 38.462 0.00 0.00 0.00 1.52
269 270 7.170554 TGTATAGGGATAGGAGAGGTGTTTA 57.829 40.000 0.00 0.00 0.00 2.01
270 271 6.039415 TGTATAGGGATAGGAGAGGTGTTT 57.961 41.667 0.00 0.00 0.00 2.83
271 272 5.681494 TGTATAGGGATAGGAGAGGTGTT 57.319 43.478 0.00 0.00 0.00 3.32
272 273 5.681494 TTGTATAGGGATAGGAGAGGTGT 57.319 43.478 0.00 0.00 0.00 4.16
273 274 8.846423 ATTATTGTATAGGGATAGGAGAGGTG 57.154 38.462 0.00 0.00 0.00 4.00
274 275 9.495382 GAATTATTGTATAGGGATAGGAGAGGT 57.505 37.037 0.00 0.00 0.00 3.85
275 276 9.722317 AGAATTATTGTATAGGGATAGGAGAGG 57.278 37.037 0.00 0.00 0.00 3.69
283 284 9.950496 CAGCTGTTAGAATTATTGTATAGGGAT 57.050 33.333 5.25 0.00 0.00 3.85
284 285 8.375506 CCAGCTGTTAGAATTATTGTATAGGGA 58.624 37.037 13.81 0.00 0.00 4.20
285 286 8.157476 ACCAGCTGTTAGAATTATTGTATAGGG 58.843 37.037 13.81 0.00 0.00 3.53
286 287 8.993121 CACCAGCTGTTAGAATTATTGTATAGG 58.007 37.037 13.81 0.00 0.00 2.57
287 288 8.499162 GCACCAGCTGTTAGAATTATTGTATAG 58.501 37.037 13.81 0.00 37.91 1.31
288 289 7.444183 GGCACCAGCTGTTAGAATTATTGTATA 59.556 37.037 13.81 0.00 41.70 1.47
289 290 6.263168 GGCACCAGCTGTTAGAATTATTGTAT 59.737 38.462 13.81 0.00 41.70 2.29
290 291 5.588648 GGCACCAGCTGTTAGAATTATTGTA 59.411 40.000 13.81 0.00 41.70 2.41
291 292 4.399303 GGCACCAGCTGTTAGAATTATTGT 59.601 41.667 13.81 0.00 41.70 2.71
292 293 4.641989 AGGCACCAGCTGTTAGAATTATTG 59.358 41.667 13.81 0.00 41.70 1.90
293 294 4.860022 AGGCACCAGCTGTTAGAATTATT 58.140 39.130 13.81 0.00 41.70 1.40
294 295 4.510167 AGGCACCAGCTGTTAGAATTAT 57.490 40.909 13.81 0.00 41.70 1.28
295 296 4.301072 AAGGCACCAGCTGTTAGAATTA 57.699 40.909 13.81 0.00 41.70 1.40
296 297 2.887151 AGGCACCAGCTGTTAGAATT 57.113 45.000 13.81 0.00 41.70 2.17
297 298 2.887151 AAGGCACCAGCTGTTAGAAT 57.113 45.000 13.81 0.00 41.70 2.40
298 299 2.903784 TCTAAGGCACCAGCTGTTAGAA 59.096 45.455 17.00 5.63 40.29 2.10
299 300 2.497675 CTCTAAGGCACCAGCTGTTAGA 59.502 50.000 17.83 17.83 40.62 2.10
300 301 2.234908 ACTCTAAGGCACCAGCTGTTAG 59.765 50.000 13.81 13.06 41.70 2.34
301 302 2.257207 ACTCTAAGGCACCAGCTGTTA 58.743 47.619 13.81 3.29 41.70 2.41
302 303 1.059913 ACTCTAAGGCACCAGCTGTT 58.940 50.000 13.81 2.11 41.70 3.16
303 304 1.059913 AACTCTAAGGCACCAGCTGT 58.940 50.000 13.81 0.00 41.70 4.40
304 305 1.446907 CAACTCTAAGGCACCAGCTG 58.553 55.000 6.78 6.78 41.70 4.24
305 306 0.322008 GCAACTCTAAGGCACCAGCT 60.322 55.000 0.00 0.00 41.70 4.24
306 307 0.606401 TGCAACTCTAAGGCACCAGC 60.606 55.000 0.00 0.00 41.10 4.85
307 308 2.012673 GATGCAACTCTAAGGCACCAG 58.987 52.381 0.00 0.00 40.83 4.00
308 309 1.350684 TGATGCAACTCTAAGGCACCA 59.649 47.619 0.00 0.00 40.83 4.17
309 310 2.113860 TGATGCAACTCTAAGGCACC 57.886 50.000 0.00 0.00 40.83 5.01
310 311 8.037758 AGTATATATGATGCAACTCTAAGGCAC 58.962 37.037 0.00 0.00 40.83 5.01
311 312 8.138928 AGTATATATGATGCAACTCTAAGGCA 57.861 34.615 0.00 0.00 42.43 4.75
312 313 9.743057 CTAGTATATATGATGCAACTCTAAGGC 57.257 37.037 0.00 0.00 0.00 4.35
313 314 9.743057 GCTAGTATATATGATGCAACTCTAAGG 57.257 37.037 0.00 0.00 0.00 2.69
322 323 9.219603 GGACAAAAAGCTAGTATATATGATGCA 57.780 33.333 0.00 0.00 0.00 3.96
323 324 9.219603 TGGACAAAAAGCTAGTATATATGATGC 57.780 33.333 0.00 0.00 0.00 3.91
363 364 5.105146 ACAGACTATCCACTTCCTGCTTTAG 60.105 44.000 0.00 0.00 0.00 1.85
364 365 4.777896 ACAGACTATCCACTTCCTGCTTTA 59.222 41.667 0.00 0.00 0.00 1.85
365 366 3.584848 ACAGACTATCCACTTCCTGCTTT 59.415 43.478 0.00 0.00 0.00 3.51
366 367 3.177228 ACAGACTATCCACTTCCTGCTT 58.823 45.455 0.00 0.00 0.00 3.91
367 368 2.826488 ACAGACTATCCACTTCCTGCT 58.174 47.619 0.00 0.00 0.00 4.24
368 369 3.618690 AACAGACTATCCACTTCCTGC 57.381 47.619 0.00 0.00 0.00 4.85
369 370 5.335191 GCAAAAACAGACTATCCACTTCCTG 60.335 44.000 0.00 0.00 0.00 3.86
370 371 4.762251 GCAAAAACAGACTATCCACTTCCT 59.238 41.667 0.00 0.00 0.00 3.36
371 372 4.082733 GGCAAAAACAGACTATCCACTTCC 60.083 45.833 0.00 0.00 0.00 3.46
372 373 4.762251 AGGCAAAAACAGACTATCCACTTC 59.238 41.667 0.00 0.00 0.00 3.01
375 376 5.453567 AAAGGCAAAAACAGACTATCCAC 57.546 39.130 0.00 0.00 0.00 4.02
390 391 8.503458 TTGATGATTTGAAAAAGAAAAGGCAA 57.497 26.923 0.00 0.00 0.00 4.52
392 393 7.588854 GCTTTGATGATTTGAAAAAGAAAAGGC 59.411 33.333 0.00 0.00 31.01 4.35
411 412 4.115516 CTGTCACATACGCTAGCTTTGAT 58.884 43.478 13.93 0.00 0.00 2.57
412 413 3.056821 ACTGTCACATACGCTAGCTTTGA 60.057 43.478 13.93 1.37 0.00 2.69
413 414 3.061295 CACTGTCACATACGCTAGCTTTG 59.939 47.826 13.93 9.74 0.00 2.77
653 693 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
654 694 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
655 695 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
656 696 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
657 697 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
658 698 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
659 699 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
660 700 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
661 701 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
688 728 9.221933 CCGTATGTAGTCTATAGTGAAATCTCT 57.778 37.037 0.00 0.00 0.00 3.10
689 729 9.217278 TCCGTATGTAGTCTATAGTGAAATCTC 57.783 37.037 0.00 0.00 0.00 2.75
690 730 9.221933 CTCCGTATGTAGTCTATAGTGAAATCT 57.778 37.037 0.00 0.00 0.00 2.40
691 731 7.964011 GCTCCGTATGTAGTCTATAGTGAAATC 59.036 40.741 0.00 0.00 0.00 2.17
692 732 7.447545 TGCTCCGTATGTAGTCTATAGTGAAAT 59.552 37.037 0.00 0.00 0.00 2.17
693 733 6.769341 TGCTCCGTATGTAGTCTATAGTGAAA 59.231 38.462 0.00 0.00 0.00 2.69
694 734 6.293698 TGCTCCGTATGTAGTCTATAGTGAA 58.706 40.000 0.00 0.00 0.00 3.18
695 735 5.861727 TGCTCCGTATGTAGTCTATAGTGA 58.138 41.667 0.00 0.00 0.00 3.41
696 736 6.555812 TTGCTCCGTATGTAGTCTATAGTG 57.444 41.667 0.00 0.00 0.00 2.74
697 737 7.578310 TTTTGCTCCGTATGTAGTCTATAGT 57.422 36.000 0.00 0.00 0.00 2.12
698 738 8.297426 TCATTTTGCTCCGTATGTAGTCTATAG 58.703 37.037 0.00 0.00 0.00 1.31
699 739 8.173542 TCATTTTGCTCCGTATGTAGTCTATA 57.826 34.615 0.00 0.00 0.00 1.31
700 740 7.050970 TCATTTTGCTCCGTATGTAGTCTAT 57.949 36.000 0.00 0.00 0.00 1.98
701 741 6.096423 ACTCATTTTGCTCCGTATGTAGTCTA 59.904 38.462 0.00 0.00 0.00 2.59
702 742 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
703 743 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
704 744 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
705 745 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
706 746 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
707 747 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
708 748 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
709 749 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
710 750 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
711 751 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
712 752 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
713 753 6.116126 AGTATAGGTTCACTCATTTTGCTCC 58.884 40.000 0.00 0.00 0.00 4.70
714 754 7.044798 AGAGTATAGGTTCACTCATTTTGCTC 58.955 38.462 4.70 0.00 42.99 4.26
715 755 6.951971 AGAGTATAGGTTCACTCATTTTGCT 58.048 36.000 4.70 0.00 42.99 3.91
716 756 8.718102 TTAGAGTATAGGTTCACTCATTTTGC 57.282 34.615 4.70 0.00 42.99 3.68
721 761 8.407064 CGTCTTTTAGAGTATAGGTTCACTCAT 58.593 37.037 4.70 0.00 42.99 2.90
722 762 7.392673 ACGTCTTTTAGAGTATAGGTTCACTCA 59.607 37.037 4.70 0.00 42.99 3.41
723 763 7.760437 ACGTCTTTTAGAGTATAGGTTCACTC 58.240 38.462 0.00 0.00 41.25 3.51
724 764 7.611079 AGACGTCTTTTAGAGTATAGGTTCACT 59.389 37.037 13.58 0.00 0.00 3.41
725 765 7.760437 AGACGTCTTTTAGAGTATAGGTTCAC 58.240 38.462 13.58 0.00 0.00 3.18
726 766 7.934855 AGACGTCTTTTAGAGTATAGGTTCA 57.065 36.000 13.58 0.00 0.00 3.18
735 775 8.719648 CGGATGTATATAGACGTCTTTTAGAGT 58.280 37.037 25.44 5.86 35.93 3.24
736 776 8.933807 TCGGATGTATATAGACGTCTTTTAGAG 58.066 37.037 25.44 6.32 35.93 2.43
737 777 8.837788 TCGGATGTATATAGACGTCTTTTAGA 57.162 34.615 25.44 10.64 35.93 2.10
739 779 9.836076 CATTCGGATGTATATAGACGTCTTTTA 57.164 33.333 25.44 16.02 35.93 1.52
740 780 8.358148 ACATTCGGATGTATATAGACGTCTTTT 58.642 33.333 25.44 14.28 44.51 2.27
741 781 7.883217 ACATTCGGATGTATATAGACGTCTTT 58.117 34.615 25.44 18.69 44.51 2.52
742 782 7.450124 ACATTCGGATGTATATAGACGTCTT 57.550 36.000 25.44 13.81 44.51 3.01
743 783 7.823310 ACTACATTCGGATGTATATAGACGTCT 59.177 37.037 23.66 23.66 45.20 4.18
744 784 7.972527 ACTACATTCGGATGTATATAGACGTC 58.027 38.462 16.89 7.70 45.20 4.34
745 785 7.823310 AGACTACATTCGGATGTATATAGACGT 59.177 37.037 16.89 9.37 45.20 4.34
746 786 8.199176 AGACTACATTCGGATGTATATAGACG 57.801 38.462 16.89 6.27 45.20 4.18
747 787 9.386010 AGAGACTACATTCGGATGTATATAGAC 57.614 37.037 16.89 7.71 45.20 2.59
753 793 9.168451 CACTATAGAGACTACATTCGGATGTAT 57.832 37.037 16.89 7.61 45.20 2.29
754 794 8.373220 TCACTATAGAGACTACATTCGGATGTA 58.627 37.037 15.76 15.76 44.51 2.29
756 796 7.674471 TCACTATAGAGACTACATTCGGATG 57.326 40.000 6.78 0.88 39.25 3.51
757 797 8.693120 TTTCACTATAGAGACTACATTCGGAT 57.307 34.615 6.78 0.00 0.00 4.18
758 798 8.568794 CATTTCACTATAGAGACTACATTCGGA 58.431 37.037 6.78 0.00 0.00 4.55
759 799 8.353684 ACATTTCACTATAGAGACTACATTCGG 58.646 37.037 6.78 0.00 0.00 4.30
760 800 9.388346 GACATTTCACTATAGAGACTACATTCG 57.612 37.037 6.78 0.00 0.00 3.34
789 829 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
790 830 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
791 831 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
792 832 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
793 833 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
794 834 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
796 836 9.852784 TCATACTCCCTCCATTCCTAAATATAA 57.147 33.333 0.00 0.00 0.00 0.98
797 837 9.852784 TTCATACTCCCTCCATTCCTAAATATA 57.147 33.333 0.00 0.00 0.00 0.86
798 838 8.606830 GTTCATACTCCCTCCATTCCTAAATAT 58.393 37.037 0.00 0.00 0.00 1.28
799 839 7.570982 TGTTCATACTCCCTCCATTCCTAAATA 59.429 37.037 0.00 0.00 0.00 1.40
800 840 6.389869 TGTTCATACTCCCTCCATTCCTAAAT 59.610 38.462 0.00 0.00 0.00 1.40
801 841 5.729229 TGTTCATACTCCCTCCATTCCTAAA 59.271 40.000 0.00 0.00 0.00 1.85
802 842 5.130477 GTGTTCATACTCCCTCCATTCCTAA 59.870 44.000 0.00 0.00 0.00 2.69
803 843 4.654262 GTGTTCATACTCCCTCCATTCCTA 59.346 45.833 0.00 0.00 0.00 2.94
804 844 3.456277 GTGTTCATACTCCCTCCATTCCT 59.544 47.826 0.00 0.00 0.00 3.36
805 845 3.199946 TGTGTTCATACTCCCTCCATTCC 59.800 47.826 0.00 0.00 0.00 3.01
806 846 4.192317 GTGTGTTCATACTCCCTCCATTC 58.808 47.826 0.00 0.00 0.00 2.67
807 847 3.587061 TGTGTGTTCATACTCCCTCCATT 59.413 43.478 1.89 0.00 0.00 3.16
808 848 3.055094 GTGTGTGTTCATACTCCCTCCAT 60.055 47.826 1.89 0.00 33.80 3.41
809 849 2.301870 GTGTGTGTTCATACTCCCTCCA 59.698 50.000 1.89 0.00 33.80 3.86
810 850 2.354805 GGTGTGTGTTCATACTCCCTCC 60.355 54.545 8.79 0.00 36.24 4.30
811 851 2.301870 TGGTGTGTGTTCATACTCCCTC 59.698 50.000 14.65 0.00 36.24 4.30
812 852 2.038557 GTGGTGTGTGTTCATACTCCCT 59.961 50.000 14.65 0.00 36.24 4.20
813 853 2.224426 TGTGGTGTGTGTTCATACTCCC 60.224 50.000 14.65 9.03 36.24 4.30
814 854 3.120321 TGTGGTGTGTGTTCATACTCC 57.880 47.619 11.80 11.80 36.24 3.85
815 855 3.120199 GCATGTGGTGTGTGTTCATACTC 60.120 47.826 0.00 0.00 36.24 2.59
816 856 2.813754 GCATGTGGTGTGTGTTCATACT 59.186 45.455 0.00 0.00 36.24 2.12
817 857 2.813754 AGCATGTGGTGTGTGTTCATAC 59.186 45.455 0.00 0.00 35.43 2.39
818 858 3.138884 AGCATGTGGTGTGTGTTCATA 57.861 42.857 0.00 0.00 0.00 2.15
819 859 1.985473 AGCATGTGGTGTGTGTTCAT 58.015 45.000 0.00 0.00 0.00 2.57
820 860 2.217750 GTAGCATGTGGTGTGTGTTCA 58.782 47.619 0.00 0.00 0.00 3.18
821 861 2.217750 TGTAGCATGTGGTGTGTGTTC 58.782 47.619 0.00 0.00 0.00 3.18
895 941 2.048222 TGGGCTGCTTCGTCTTCG 60.048 61.111 0.00 0.00 38.55 3.79
896 942 0.320771 TTCTGGGCTGCTTCGTCTTC 60.321 55.000 0.00 0.00 0.00 2.87
897 943 0.326264 ATTCTGGGCTGCTTCGTCTT 59.674 50.000 0.00 0.00 0.00 3.01
898 944 0.107945 GATTCTGGGCTGCTTCGTCT 60.108 55.000 0.00 0.00 0.00 4.18
899 945 1.092345 GGATTCTGGGCTGCTTCGTC 61.092 60.000 0.00 0.00 0.00 4.20
900 946 1.078143 GGATTCTGGGCTGCTTCGT 60.078 57.895 0.00 0.00 0.00 3.85
932 979 0.108804 GCCGGTCAAGATCGAAGTCA 60.109 55.000 1.90 0.00 37.01 3.41
1007 1065 2.308275 TGTGGATGTGTGGATGGATGAA 59.692 45.455 0.00 0.00 0.00 2.57
1022 1080 1.480137 GTAGAGCAGAGCTGTGTGGAT 59.520 52.381 13.05 0.00 39.88 3.41
1028 1090 0.169230 CGAACGTAGAGCAGAGCTGT 59.831 55.000 0.00 0.00 39.88 4.40
1051 1113 4.400567 GGAGATGCTCTTAAAAAGGCATGT 59.599 41.667 15.59 12.96 41.92 3.21
1098 1167 3.754955 CGACGTGCTATGAAAGAGTGTA 58.245 45.455 0.00 0.00 0.00 2.90
1260 1380 0.606604 CTTGCTTGAAGGCCAGCAAT 59.393 50.000 23.92 0.00 44.68 3.56
1822 2057 0.400594 AGGTTTAGGTGTGTGAGGGC 59.599 55.000 0.00 0.00 0.00 5.19
1899 2134 5.725362 CTTGTTAAGTTCCAAAACCAACCA 58.275 37.500 0.00 0.00 35.92 3.67
1943 2178 9.036980 GGAATGGACCATACAGATAGTTACTAT 57.963 37.037 7.59 4.35 0.00 2.12
2058 2323 6.595682 CCATAGTTCCTCCAAATCACATAGT 58.404 40.000 0.00 0.00 0.00 2.12
2501 2833 9.453572 TTGAGAGATAGACATAAGTGCAATTTT 57.546 29.630 4.05 0.00 0.00 1.82
2724 3281 0.685097 TGCTAAGGGCGAGTTCAGTT 59.315 50.000 0.00 0.00 45.43 3.16
2748 3305 4.053983 CCGTGATCACACCATCTAGATTG 58.946 47.826 24.93 1.88 43.34 2.67
3035 3592 4.072131 TGATGGTAACTTGCCAGAAAGAC 58.928 43.478 4.79 0.00 39.65 3.01
3072 3629 7.667575 AAGATCCATGAAAGCTAGACTCTTA 57.332 36.000 0.00 0.00 0.00 2.10
3084 3641 9.947433 AAATTATTTGCTGAAAGATCCATGAAA 57.053 25.926 0.00 0.00 34.07 2.69
3199 3756 6.653320 AGGCGTTTAAGATTTGTGATAGTCAA 59.347 34.615 0.00 0.00 0.00 3.18
3276 3833 6.650390 GGGTCATTGCTGTTAAATTTGACAAT 59.350 34.615 15.67 5.33 35.00 2.71
3465 4022 2.826674 TCCCATCAGGAATTTCACCC 57.173 50.000 0.00 0.00 43.78 4.61
3622 4179 1.141657 AGTCAAGTCTGCCAAGCTTGA 59.858 47.619 28.05 7.89 40.80 3.02
3636 4193 6.881602 AGTCCAAGGAGCTTAAATAAGTCAAG 59.118 38.462 0.00 0.00 35.75 3.02
4198 5847 7.140522 ACCCGTAAGTACAACCCAATATAAT 57.859 36.000 0.00 0.00 0.00 1.28
4680 9244 9.943163 CGATACTCCTATGTATCATGTATCTTG 57.057 37.037 12.99 0.00 45.34 3.02
4682 9246 7.229707 GCCGATACTCCTATGTATCATGTATCT 59.770 40.741 12.99 0.00 45.34 1.98
4689 9253 3.762288 GGTGCCGATACTCCTATGTATCA 59.238 47.826 12.99 0.00 45.34 2.15
4744 9308 7.174426 ACAGCCCTTATTTAACTTGTACTGAAC 59.826 37.037 0.00 0.00 0.00 3.18
4838 9407 3.146104 GATGGTATCCACATCCTTGGG 57.854 52.381 0.00 0.00 38.98 4.12
4901 9470 3.266772 TCCTGGCCTATGTTCATTTGTCT 59.733 43.478 3.32 0.00 0.00 3.41
4918 9487 3.897505 GACCATTAATTTCCCCATCCTGG 59.102 47.826 0.00 0.00 37.25 4.45
4936 9505 6.009589 TGCTATTCCTTTGAAATCTTGACCA 58.990 36.000 0.00 0.00 33.32 4.02
4982 9551 7.251704 TCGATCTTAGATGGCAATTCTTTTC 57.748 36.000 0.00 0.00 0.00 2.29
4987 9557 6.481644 AGTTCTTCGATCTTAGATGGCAATTC 59.518 38.462 0.00 0.00 0.00 2.17
4995 9565 7.776030 TCTTAGACCAGTTCTTCGATCTTAGAT 59.224 37.037 0.00 0.00 35.55 1.98
5001 9571 6.622549 TCTTTCTTAGACCAGTTCTTCGATC 58.377 40.000 0.00 0.00 35.55 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.