Multiple sequence alignment - TraesCS6A01G012900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G012900 chr6A 100.000 4093 0 0 1 4093 5915467 5919559 0.000000e+00 7559.0
1 TraesCS6A01G012900 chr6A 88.300 1735 191 12 2364 4092 5901850 5903578 0.000000e+00 2069.0
2 TraesCS6A01G012900 chr6A 87.235 1653 194 12 2439 4088 5940879 5942517 0.000000e+00 1868.0
3 TraesCS6A01G012900 chr6A 89.039 593 55 7 1033 1618 5939549 5940138 0.000000e+00 726.0
4 TraesCS6A01G012900 chr6A 79.663 949 149 26 1616 2535 5940177 5941110 0.000000e+00 643.0
5 TraesCS6A01G012900 chr6A 84.115 661 87 8 1616 2260 5901367 5902025 1.250000e-174 623.0
6 TraesCS6A01G012900 chr6A 80.106 377 66 6 2093 2462 5940735 5941109 5.210000e-69 272.0
7 TraesCS6A01G012900 chr6A 77.176 517 84 12 1036 1538 6698704 6699200 1.880000e-68 270.0
8 TraesCS6A01G012900 chr6A 91.489 141 11 1 390 530 103275577 103275438 4.180000e-45 193.0
9 TraesCS6A01G012900 chr6A 81.683 202 32 5 135 333 104079095 104079294 3.270000e-36 163.0
10 TraesCS6A01G012900 chr6A 86.170 94 8 2 2176 2269 5917575 5917663 3.370000e-16 97.1
11 TraesCS6A01G012900 chr6A 82.569 109 14 2 2093 2196 5940807 5940915 1.570000e-14 91.6
12 TraesCS6A01G012900 chr6D 88.403 2216 250 3 1883 4092 6352616 6354830 0.000000e+00 2662.0
13 TraesCS6A01G012900 chr6D 88.697 1911 211 3 2176 4086 6371318 6373223 0.000000e+00 2327.0
14 TraesCS6A01G012900 chr6D 87.891 1916 213 15 2176 4077 6497433 6499343 0.000000e+00 2235.0
15 TraesCS6A01G012900 chr6D 97.093 1204 21 3 1619 2808 6442441 6443644 0.000000e+00 2017.0
16 TraesCS6A01G012900 chr6D 86.957 1656 201 10 2439 4092 6426512 6428154 0.000000e+00 1847.0
17 TraesCS6A01G012900 chr6D 95.399 1065 47 2 2966 4029 6465690 6466753 0.000000e+00 1694.0
18 TraesCS6A01G012900 chr6D 95.980 1020 37 3 1 1016 6440727 6441746 0.000000e+00 1653.0
19 TraesCS6A01G012900 chr6D 98.033 610 9 1 1011 1617 6441789 6442398 0.000000e+00 1057.0
20 TraesCS6A01G012900 chr6D 88.533 593 58 7 1033 1618 6425182 6425771 0.000000e+00 710.0
21 TraesCS6A01G012900 chr6D 87.263 581 56 8 1043 1617 6496293 6496861 0.000000e+00 647.0
22 TraesCS6A01G012900 chr6D 80.000 930 140 27 1616 2515 6425810 6426723 0.000000e+00 645.0
23 TraesCS6A01G012900 chr6D 86.902 481 57 3 1043 1520 6351621 6352098 6.020000e-148 534.0
24 TraesCS6A01G012900 chr6D 83.048 584 71 15 1043 1617 6370259 6370823 4.720000e-139 505.0
25 TraesCS6A01G012900 chr6D 89.045 356 33 2 1856 2206 6371065 6371419 1.750000e-118 436.0
26 TraesCS6A01G012900 chr6D 88.450 329 32 3 1883 2206 6497207 6497534 3.840000e-105 392.0
27 TraesCS6A01G012900 chr6D 80.811 370 62 6 2093 2455 6426368 6426735 8.660000e-72 281.0
28 TraesCS6A01G012900 chr6D 82.927 246 33 3 1616 1852 6352310 6352555 3.200000e-51 213.0
29 TraesCS6A01G012900 chr6D 82.520 246 34 3 1616 1852 6496901 6497146 1.490000e-49 207.0
30 TraesCS6A01G012900 chr6D 91.228 114 10 0 220 333 418957100 418956987 5.480000e-34 156.0
31 TraesCS6A01G012900 chr6D 87.407 135 14 2 1486 1617 6352136 6352270 7.090000e-33 152.0
32 TraesCS6A01G012900 chr6D 85.430 151 14 3 717 867 6496072 6496214 2.550000e-32 150.0
33 TraesCS6A01G012900 chr6D 90.909 88 8 0 2176 2263 6352842 6352929 7.190000e-23 119.0
34 TraesCS6A01G012900 chr6D 89.362 94 10 0 2176 2269 6442940 6443033 7.190000e-23 119.0
35 TraesCS6A01G012900 chr6D 81.513 119 16 3 2093 2206 6426440 6426557 4.360000e-15 93.5
36 TraesCS6A01G012900 chr6D 83.495 103 11 2 2109 2206 6352914 6353015 1.570000e-14 91.6
37 TraesCS6A01G012900 chr6D 100.000 30 0 0 4063 4092 6466756 6466785 5.720000e-04 56.5
38 TraesCS6A01G012900 chr6B 86.835 1899 227 12 2192 4077 11793429 11795317 0.000000e+00 2100.0
39 TraesCS6A01G012900 chr6B 89.151 1189 125 4 2891 4077 11599607 11600793 0.000000e+00 1478.0
40 TraesCS6A01G012900 chr6B 86.403 581 70 6 1043 1617 11592854 11593431 9.660000e-176 627.0
41 TraesCS6A01G012900 chr6B 89.336 422 42 2 1043 1461 11792356 11792777 1.010000e-145 527.0
42 TraesCS6A01G012900 chr6B 86.650 412 50 4 2440 2850 11599192 11599599 6.240000e-123 451.0
43 TraesCS6A01G012900 chr6B 87.077 325 39 3 1883 2207 11793195 11793516 8.360000e-97 364.0
44 TraesCS6A01G012900 chr6B 85.551 263 31 5 2176 2437 11593696 11593952 6.740000e-68 268.0
45 TraesCS6A01G012900 chr6B 75.251 598 114 22 1046 1617 12634274 12633685 1.890000e-63 254.0
46 TraesCS6A01G012900 chr6B 82.857 245 33 3 1617 1852 11792890 11793134 1.150000e-50 211.0
47 TraesCS6A01G012900 chr6B 91.971 137 9 2 388 524 132896058 132895924 1.500000e-44 191.0
48 TraesCS6A01G012900 chr6B 78.744 207 23 12 677 867 11762152 11762353 7.190000e-23 119.0
49 TraesCS6A01G012900 chr5D 94.245 139 5 3 390 528 1538904 1539039 4.150000e-50 209.0
50 TraesCS6A01G012900 chr5D 92.537 134 8 2 390 523 438982745 438982614 1.500000e-44 191.0
51 TraesCS6A01G012900 chr5D 87.603 121 15 0 220 340 69096508 69096388 1.530000e-29 141.0
52 TraesCS6A01G012900 chr5D 91.765 85 7 0 134 218 492185307 492185391 7.190000e-23 119.0
53 TraesCS6A01G012900 chr7D 93.382 136 8 1 390 525 192260248 192260382 2.500000e-47 200.0
54 TraesCS6A01G012900 chr7D 88.172 93 11 0 128 220 104018101 104018193 1.200000e-20 111.0
55 TraesCS6A01G012900 chr1D 92.806 139 9 1 390 528 239653254 239653391 2.500000e-47 200.0
56 TraesCS6A01G012900 chr3D 93.333 135 8 1 390 524 296601719 296601852 8.970000e-47 198.0
57 TraesCS6A01G012900 chr5B 91.367 139 10 2 390 528 710335573 710335709 5.400000e-44 189.0
58 TraesCS6A01G012900 chr5B 90.351 114 11 0 220 333 459491597 459491710 2.550000e-32 150.0
59 TraesCS6A01G012900 chr2B 85.484 186 21 2 152 332 526885442 526885258 5.400000e-44 189.0
60 TraesCS6A01G012900 chr2D 91.150 113 10 0 222 334 71386460 71386572 1.970000e-33 154.0
61 TraesCS6A01G012900 chr4B 89.831 118 8 4 220 333 642077314 642077197 9.170000e-32 148.0
62 TraesCS6A01G012900 chr4B 89.655 87 9 0 134 220 525268175 525268261 1.200000e-20 111.0
63 TraesCS6A01G012900 chr4B 89.655 87 9 0 134 220 525304754 525304668 1.200000e-20 111.0
64 TraesCS6A01G012900 chr4B 89.655 87 9 0 134 220 525389929 525390015 1.200000e-20 111.0
65 TraesCS6A01G012900 chr3B 90.909 110 10 0 226 335 530606763 530606872 9.170000e-32 148.0
66 TraesCS6A01G012900 chr4A 89.130 92 7 3 130 220 719904769 719904680 1.200000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G012900 chr6A 5915467 5919559 4092 False 3828.050000 7559 93.085000 1 4093 2 chr6A.!!$F4 4092
1 TraesCS6A01G012900 chr6A 5901367 5903578 2211 False 1346.000000 2069 86.207500 1616 4092 2 chr6A.!!$F3 2476
2 TraesCS6A01G012900 chr6A 5939549 5942517 2968 False 720.120000 1868 83.722400 1033 4088 5 chr6A.!!$F5 3055
3 TraesCS6A01G012900 chr6D 6440727 6443644 2917 False 1211.500000 2017 95.117000 1 2808 4 chr6D.!!$F4 2807
4 TraesCS6A01G012900 chr6D 6370259 6373223 2964 False 1089.333333 2327 86.930000 1043 4086 3 chr6D.!!$F2 3043
5 TraesCS6A01G012900 chr6D 6465690 6466785 1095 False 875.250000 1694 97.699500 2966 4092 2 chr6D.!!$F5 1126
6 TraesCS6A01G012900 chr6D 6496072 6499343 3271 False 726.200000 2235 86.310800 717 4077 5 chr6D.!!$F6 3360
7 TraesCS6A01G012900 chr6D 6425182 6428154 2972 False 715.300000 1847 83.562800 1033 4092 5 chr6D.!!$F3 3059
8 TraesCS6A01G012900 chr6D 6351621 6354830 3209 False 628.600000 2662 86.673833 1043 4092 6 chr6D.!!$F1 3049
9 TraesCS6A01G012900 chr6B 11599192 11600793 1601 False 964.500000 1478 87.900500 2440 4077 2 chr6B.!!$F3 1637
10 TraesCS6A01G012900 chr6B 11792356 11795317 2961 False 800.500000 2100 86.526250 1043 4077 4 chr6B.!!$F4 3034
11 TraesCS6A01G012900 chr6B 11592854 11593952 1098 False 447.500000 627 85.977000 1043 2437 2 chr6B.!!$F2 1394
12 TraesCS6A01G012900 chr6B 12633685 12634274 589 True 254.000000 254 75.251000 1046 1617 1 chr6B.!!$R1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.536724 TCTTTGATGCTAGCGCCTCA 59.463 50.0 10.77 10.09 38.72 3.86 F
1326 1426 0.621082 TGGGACATATTTGGTCGGCA 59.379 50.0 0.00 0.00 36.12 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1669 0.183492 TCCAGCTTTGACAGGTTGCT 59.817 50.000 0.00 0.0 0.00 3.91 R
3169 3626 3.967326 TCACCGGAATATCTCCACAGAAT 59.033 43.478 9.46 0.0 45.74 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 1.530293 CATCTTTGATGCTAGCGCCTC 59.470 52.381 10.77 7.48 34.43 4.70
102 103 0.536724 TCTTTGATGCTAGCGCCTCA 59.463 50.000 10.77 10.09 38.72 3.86
247 248 4.691216 CAGAGGTATAATTTTAGCTCCCGC 59.309 45.833 23.20 7.23 44.20 6.13
265 266 4.162640 CGCAATCGGTCTCGTTGA 57.837 55.556 0.00 0.00 37.69 3.18
294 295 5.885230 TTACGGTCGAACTTAGATCTTGA 57.115 39.130 0.00 0.00 0.00 3.02
295 296 4.358494 ACGGTCGAACTTAGATCTTGAG 57.642 45.455 0.00 2.17 0.00 3.02
301 302 4.156190 TCGAACTTAGATCTTGAGAAGCGT 59.844 41.667 0.00 0.00 0.00 5.07
317 318 2.822306 CGTGGACGCACTACATTGT 58.178 52.632 0.00 0.00 0.00 2.71
377 378 2.270352 TTGGATTGTCCGTCTTTGCT 57.730 45.000 0.00 0.00 40.17 3.91
381 382 3.243367 TGGATTGTCCGTCTTTGCTTTTG 60.243 43.478 0.00 0.00 40.17 2.44
400 401 6.092670 GCTTTTGCTTTTGGTTTTTCTCTCTT 59.907 34.615 0.00 0.00 43.35 2.85
401 402 6.966435 TTTGCTTTTGGTTTTTCTCTCTTG 57.034 33.333 0.00 0.00 0.00 3.02
403 404 5.650543 TGCTTTTGGTTTTTCTCTCTTGTC 58.349 37.500 0.00 0.00 0.00 3.18
412 415 7.975616 TGGTTTTTCTCTCTTGTCAGATTTTTG 59.024 33.333 0.00 0.00 0.00 2.44
413 416 7.976175 GGTTTTTCTCTCTTGTCAGATTTTTGT 59.024 33.333 0.00 0.00 0.00 2.83
420 423 7.825681 TCTCTTGTCAGATTTTTGTTGTTTGA 58.174 30.769 0.00 0.00 0.00 2.69
421 424 7.754924 TCTCTTGTCAGATTTTTGTTGTTTGAC 59.245 33.333 0.00 0.00 35.31 3.18
435 438 3.402110 TGTTTGACTGTGTGCATCCTAG 58.598 45.455 0.00 0.00 0.00 3.02
440 443 6.538945 TTGACTGTGTGCATCCTAGTTATA 57.461 37.500 0.00 0.00 0.00 0.98
467 470 1.474498 CCGGGTGGGTACTCTAAATGC 60.474 57.143 0.00 0.00 0.00 3.56
484 487 2.830772 TGCTTTGTATCGCTTGATGC 57.169 45.000 0.00 0.00 35.51 3.91
493 496 7.546778 TTGTATCGCTTGATGCTACATTTTA 57.453 32.000 0.00 0.00 40.11 1.52
807 812 2.046892 GTCTGCGCCCACACATCT 60.047 61.111 4.18 0.00 0.00 2.90
816 821 1.548081 CCCACACATCTGCCATGAAA 58.452 50.000 0.00 0.00 0.00 2.69
929 934 1.449601 CCACTATCGCCACCACCAC 60.450 63.158 0.00 0.00 0.00 4.16
1119 1201 3.443925 GCTTCTTCCTTGCCGCCC 61.444 66.667 0.00 0.00 0.00 6.13
1215 1309 3.752665 GATGACCCCTACGACTATCTCA 58.247 50.000 0.00 0.00 0.00 3.27
1326 1426 0.621082 TGGGACATATTTGGTCGGCA 59.379 50.000 0.00 0.00 36.12 5.69
1497 1669 2.432510 GCTCTCTTGCCTCCTAAGCTTA 59.567 50.000 5.94 5.94 0.00 3.09
1820 2089 2.092212 CCTCTATGTGTGGGCCATTTCT 60.092 50.000 10.70 0.00 0.00 2.52
1996 2295 4.925068 AGATAAATTGCCAAGATGTTCGC 58.075 39.130 0.00 0.00 0.00 4.70
2124 2423 8.029782 ACAATAACATTACTGGAGCTATACCA 57.970 34.615 0.00 0.00 35.96 3.25
2132 2503 2.297597 CTGGAGCTATACCACTAGGCAC 59.702 54.545 0.00 0.00 39.06 5.01
2390 2847 8.275040 ACCTTTCTTACAATAGCATTACTGGAT 58.725 33.333 0.00 0.00 0.00 3.41
2402 2859 5.787494 AGCATTACTGGATCTATACCACCAT 59.213 40.000 0.00 0.00 33.57 3.55
2437 2894 7.116075 ACTGCACCAAATTATATCACCTTACA 58.884 34.615 0.00 0.00 0.00 2.41
2498 2955 5.318630 GGTTGGGGAATTACACTAGTTTGA 58.681 41.667 0.00 0.00 0.00 2.69
2499 2956 5.414765 GGTTGGGGAATTACACTAGTTTGAG 59.585 44.000 0.00 0.00 0.00 3.02
2531 2988 5.417894 TCTCTTTCGAGCAACCATCTTACTA 59.582 40.000 0.00 0.00 37.19 1.82
2799 3256 3.425162 AAAGAACTTAGAGCACCTGGG 57.575 47.619 0.00 0.00 0.00 4.45
2820 3277 6.068010 TGGGTCTATCACACAATTCTTTGTT 58.932 36.000 0.00 0.00 43.57 2.83
2854 3311 0.741221 CAGAGTTTGGAGCTACCGGC 60.741 60.000 0.00 0.00 42.61 6.13
2877 3334 8.304596 CGGCTTAGTAGAATTGACATTATCCTA 58.695 37.037 0.00 0.00 0.00 2.94
2924 3381 6.828273 TCCTGAATCTATTTGTATGTTGTGGG 59.172 38.462 0.00 0.00 0.00 4.61
2929 3386 5.496556 TCTATTTGTATGTTGTGGGACCTG 58.503 41.667 0.00 0.00 0.00 4.00
3079 3536 5.339008 ACTACTCGAGTTTGGCATTCATA 57.661 39.130 25.44 0.00 33.13 2.15
3087 3544 7.272244 TCGAGTTTGGCATTCATAGATCTTTA 58.728 34.615 0.00 0.00 0.00 1.85
3169 3626 6.568462 GCTTTCTGCAGCTAAGTCACAATTTA 60.568 38.462 21.75 0.00 42.31 1.40
3365 3822 6.128363 CCGTGTGGGTAAATTTAGAGAAGTTC 60.128 42.308 0.00 0.00 0.00 3.01
3995 4452 0.820074 TGTGGTTGTTACTTGGGGCG 60.820 55.000 0.00 0.00 0.00 6.13
4033 4490 1.600957 CCAGCAACTCAAGTGTGACAG 59.399 52.381 0.00 0.00 0.00 3.51
4040 4497 3.403038 ACTCAAGTGTGACAGCCAATAC 58.597 45.455 0.00 0.00 0.00 1.89
4044 4501 2.621338 AGTGTGACAGCCAATACGATG 58.379 47.619 0.00 0.00 0.00 3.84
4057 4514 4.516321 CCAATACGATGATGCAAATCTGGA 59.484 41.667 10.78 3.74 0.00 3.86
4092 4549 5.624738 CGCCCTACTACTGAAGTCTGAAATT 60.625 44.000 0.00 0.00 39.80 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.945668 GTTGTCAAACCAAGTCTGCTCT 59.054 45.455 0.00 0.00 0.00 4.09
101 102 0.321653 AAAGCTACCGGGCAACTCTG 60.322 55.000 6.32 0.00 34.17 3.35
102 103 0.400594 AAAAGCTACCGGGCAACTCT 59.599 50.000 6.32 0.00 34.17 3.24
150 151 3.470267 CGCGGACGCACTACATTT 58.530 55.556 17.35 0.00 42.06 2.32
265 266 9.813446 AGATCTAAGTTCGACCGTAAATTTAAT 57.187 29.630 0.00 0.00 0.00 1.40
301 302 0.682292 TCCACAATGTAGTGCGTCCA 59.318 50.000 0.00 0.00 38.18 4.02
317 318 8.287904 ACAATATAAATACTCCCTCCATTCCA 57.712 34.615 0.00 0.00 0.00 3.53
377 378 6.934083 ACAAGAGAGAAAAACCAAAAGCAAAA 59.066 30.769 0.00 0.00 0.00 2.44
381 382 5.650543 TGACAAGAGAGAAAAACCAAAAGC 58.349 37.500 0.00 0.00 0.00 3.51
394 395 7.970061 TCAAACAACAAAAATCTGACAAGAGAG 59.030 33.333 0.00 0.00 35.37 3.20
395 396 7.754924 GTCAAACAACAAAAATCTGACAAGAGA 59.245 33.333 0.00 0.00 35.37 3.10
400 401 6.585702 CACAGTCAAACAACAAAAATCTGACA 59.414 34.615 0.00 0.00 35.32 3.58
401 402 6.586082 ACACAGTCAAACAACAAAAATCTGAC 59.414 34.615 0.00 0.00 33.51 3.51
403 404 6.670452 GCACACAGTCAAACAACAAAAATCTG 60.670 38.462 0.00 0.00 0.00 2.90
412 415 2.358898 AGGATGCACACAGTCAAACAAC 59.641 45.455 0.00 0.00 0.00 3.32
413 416 2.653726 AGGATGCACACAGTCAAACAA 58.346 42.857 0.00 0.00 0.00 2.83
420 423 5.656859 TCTGTATAACTAGGATGCACACAGT 59.343 40.000 0.00 0.00 34.08 3.55
421 424 6.149129 TCTGTATAACTAGGATGCACACAG 57.851 41.667 0.00 0.00 33.78 3.66
435 438 0.106149 CCACCCGGCCTCTGTATAAC 59.894 60.000 0.00 0.00 0.00 1.89
440 443 4.326227 TACCCACCCGGCCTCTGT 62.326 66.667 0.00 0.00 33.26 3.41
525 528 0.250467 AGGCTCACTGTCACGCATTT 60.250 50.000 0.00 0.00 0.00 2.32
526 529 0.250467 AAGGCTCACTGTCACGCATT 60.250 50.000 0.00 0.00 0.00 3.56
530 533 1.073964 CATCAAGGCTCACTGTCACG 58.926 55.000 0.00 0.00 0.00 4.35
541 544 1.331756 CGTACAGGATTGCATCAAGGC 59.668 52.381 0.00 0.00 0.00 4.35
724 729 1.978455 TTGACTGGTTCGTGGGCTGT 61.978 55.000 0.00 0.00 0.00 4.40
889 894 1.261938 TGGTGGCGGCTATAGTGTGT 61.262 55.000 11.43 0.00 0.00 3.72
929 934 1.060122 GATGAGGTACGCGTTTTTCCG 59.940 52.381 20.78 0.00 0.00 4.30
1139 1230 4.161295 TCGCGCCCTATGCAGCTT 62.161 61.111 0.00 0.00 41.33 3.74
1166 1257 1.619827 CCTTGATTGAAGGCCAGCAAA 59.380 47.619 5.01 0.00 45.17 3.68
1326 1426 6.069731 AGAGAAAGCAAGGATGGACTTATCTT 60.070 38.462 0.00 0.00 0.00 2.40
1497 1669 0.183492 TCCAGCTTTGACAGGTTGCT 59.817 50.000 0.00 0.00 0.00 3.91
1820 2089 4.565022 TGTCATATTTGCGAGTGAGTCAA 58.435 39.130 0.00 0.00 0.00 3.18
1996 2295 4.274459 GCTCAAGTACTGCAATCTATTGGG 59.726 45.833 0.00 0.00 38.21 4.12
2124 2423 4.899352 AAAGAAGACAGATGTGCCTAGT 57.101 40.909 0.00 0.00 0.00 2.57
2132 2503 6.652481 TGAAGGCTTTCTAAAGAAGACAGATG 59.348 38.462 10.19 0.00 34.44 2.90
2390 2847 8.585881 GCAGTTCTCTAATAATGGTGGTATAGA 58.414 37.037 0.00 0.00 0.00 1.98
2437 2894 5.070847 TCCGGTAAGAAGGTTGTTAGAAAGT 59.929 40.000 0.00 0.00 0.00 2.66
2531 2988 5.131308 TCACTGTCTCTAGCTGTATAGGTCT 59.869 44.000 0.00 0.00 35.90 3.85
2558 3015 5.277250 GGTCGAGGACTTCTAATGTAGTACG 60.277 48.000 0.00 0.00 30.79 3.67
2877 3334 6.069615 AGGAATATGCCCACTAAAGTAGTTGT 60.070 38.462 0.00 0.00 36.76 3.32
2881 3338 6.174720 TCAGGAATATGCCCACTAAAGTAG 57.825 41.667 0.00 0.00 0.00 2.57
2887 3344 7.574021 AATAGATTCAGGAATATGCCCACTA 57.426 36.000 0.00 0.00 0.00 2.74
2924 3381 4.943705 TGATAAATCCAAGACAAGCAGGTC 59.056 41.667 0.00 0.00 38.08 3.85
2929 3386 6.366061 GGTTGTTTGATAAATCCAAGACAAGC 59.634 38.462 0.61 0.61 36.77 4.01
3087 3544 8.416329 GCAATGTTCCATAGAAATTATTCACCT 58.584 33.333 0.00 0.00 38.06 4.00
3169 3626 3.967326 TCACCGGAATATCTCCACAGAAT 59.033 43.478 9.46 0.00 45.74 2.40
3365 3822 1.434696 GCTTCATCACAATGGGCCG 59.565 57.895 0.00 0.00 33.42 6.13
3995 4452 1.162181 GGCGCCTTACGGTTTATCCC 61.162 60.000 22.15 0.00 43.93 3.85
4013 4470 1.600957 CTGTCACACTTGAGTTGCTGG 59.399 52.381 0.00 0.00 30.10 4.85
4022 4479 2.412870 TCGTATTGGCTGTCACACTTG 58.587 47.619 0.00 0.00 0.00 3.16
4033 4490 4.224433 CAGATTTGCATCATCGTATTGGC 58.776 43.478 0.00 0.00 0.00 4.52
4040 4497 3.813724 ACATCTCCAGATTTGCATCATCG 59.186 43.478 0.00 0.00 31.21 3.84
4044 4501 5.831702 AGAAACATCTCCAGATTTGCATC 57.168 39.130 0.00 0.00 31.21 3.91
4057 4514 4.024670 AGTAGTAGGGCGAAGAAACATCT 58.975 43.478 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.