AutoCloner

Multiple sequence alignment - TraesCS6A01G011900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G011900	chr6A	100.000	3052	0	0	1	3052	5506104	5503053	0.000000e+00	5637.0
1	TraesCS6A01G011900	chr6A	92.860	2493	109	23	615	3052	5481295	5478817	0.000000e+00	3554.0
2	TraesCS6A01G011900	chr6A	86.535	557	68	6	1542	2096	5557922	5557371	9.360000e-170	606.0
3	TraesCS6A01G011900	chr6A	91.156	294	23	2	571	863	5558844	5558553	2.210000e-106	396.0
4	TraesCS6A01G011900	chr6A	81.605	299	20	17	277	563	5481677	5481402	6.630000e-52	215.0
5	TraesCS6A01G011900	chr6A	93.750	48	3	0	829	876	5481113	5481066	4.220000e-09	73.1
6	TraesCS6A01G011900	chr6A	96.970	33	1	0	844	876	5558604	5558572	4.250000e-04	56.5
7	TraesCS6A01G011900	chr6B	90.732	1845	118	21	562	2365	11429279	11427447	0.000000e+00	2410.0
8	TraesCS6A01G011900	chr6B	83.601	1555	188	38	1544	3050	11525447	11523912	0.000000e+00	1397.0
9	TraesCS6A01G011900	chr6B	90.738	637	55	4	2419	3051	11420193	11419557	0.000000e+00	846.0
10	TraesCS6A01G011900	chr6B	79.464	896	114	38	562	1424	11526339	11525481	3.410000e-159	571.0
11	TraesCS6A01G011900	chr6B	86.667	300	23	4	276	562	11429605	11429310	1.770000e-82	316.0
12	TraesCS6A01G011900	chr6D	91.578	1033	53	10	2053	3051	6133817	6132785	0.000000e+00	1395.0
13	TraesCS6A01G011900	chr6D	84.391	1371	157	30	1542	2869	6260852	6259496	0.000000e+00	1293.0
14	TraesCS6A01G011900	chr6D	91.972	710	33	5	831	1519	6135200	6134494	0.000000e+00	974.0
15	TraesCS6A01G011900	chr6D	96.309	569	19	2	276	844	6135721	6135155	0.000000e+00	933.0
16	TraesCS6A01G011900	chr6D	95.504	556	25	0	1499	2054	6134466	6133911	0.000000e+00	889.0
17	TraesCS6A01G011900	chr6D	83.280	628	51	19	277	863	6262097	6261483	2.080000e-146	529.0
18	TraesCS6A01G011900	chr7A	92.364	275	20	1	1	274	117641116	117641390	1.030000e-104	390.0
19	TraesCS6A01G011900	chr2A	94.619	223	12	0	48	270	62240936	62241158	2.250000e-91	346.0
20	TraesCS6A01G011900	chr2A	94.118	221	12	1	48	268	62240307	62240526	4.880000e-88	335.0
21	TraesCS6A01G011900	chr5A	90.494	263	22	3	9	270	219240384	219240124	8.100000e-91	344.0
22	TraesCS6A01G011900	chr3D	91.892	111	9	0	160	270	141670393	141670503	4.070000e-34	156.0
23	TraesCS6A01G011900	chr1D	90.991	111	10	0	160	270	50885423	50885313	1.900000e-32	150.0
24	TraesCS6A01G011900	chr4D	90.991	111	9	1	160	270	105240364	105240255	6.820000e-32	148.0
25	TraesCS6A01G011900	chr4D	89.655	116	9	3	160	275	436696650	436696762	8.820000e-31	145.0
26	TraesCS6A01G011900	chr7D	89.565	115	10	2	157	270	128440370	128440483	8.820000e-31	145.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G011900	chr6A	5503053	5506104	3051	True	5637.000000	5637	100.000000	1	3052	1	chr6A.!!$R1	3051
1	TraesCS6A01G011900	chr6A	5478817	5481677	2860	True	1280.700000	3554	89.405000	277	3052	3	chr6A.!!$R2	2775
2	TraesCS6A01G011900	chr6A	5557371	5558844	1473	True	352.833333	606	91.553667	571	2096	3	chr6A.!!$R3	1525
3	TraesCS6A01G011900	chr6B	11427447	11429605	2158	True	1363.000000	2410	88.699500	276	2365	2	chr6B.!!$R2	2089
4	TraesCS6A01G011900	chr6B	11523912	11526339	2427	True	984.000000	1397	81.532500	562	3050	2	chr6B.!!$R3	2488
5	TraesCS6A01G011900	chr6B	11419557	11420193	636	True	846.000000	846	90.738000	2419	3051	1	chr6B.!!$R1	632
6	TraesCS6A01G011900	chr6D	6132785	6135721	2936	True	1047.750000	1395	93.840750	276	3051	4	chr6D.!!$R1	2775
7	TraesCS6A01G011900	chr6D	6259496	6262097	2601	True	911.000000	1293	83.835500	277	2869	2	chr6D.!!$R2	2592
8	TraesCS6A01G011900	chr2A	62240307	62241158	851	False	340.500000	346	94.368500	48	270	2	chr2A.!!$F1	222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
873	1649	0.674581	TCATGCTGGTGCTGCTGTAC	60.675	55.0	0.0	3.17	40.48	2.9	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2384	3387	1.004745	GGATGATGGGGTGTCACAACT	59.995	52.381	5.12	0.0	0.0	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	6.732531	TGTTTCTCTAACAATCTGCTGATG	57.267	37.500	6.88	4.49	43.58	3.07
44	45	5.645067	TGTTTCTCTAACAATCTGCTGATGG	59.355	40.000	6.88	6.64	43.58	3.51
45	46	5.682234	TTCTCTAACAATCTGCTGATGGA	57.318	39.130	14.43	4.71	32.44	3.41
46	47	5.016051	TCTCTAACAATCTGCTGATGGAC	57.984	43.478	14.43	0.00	32.44	4.02
66	67	4.087892	GAGCAAGCCCAGCCGAGA	62.088	66.667	0.00	0.00	0.00	4.04
92	722	4.329545	GACTTCGTGGCCCAGGCA	62.330	66.667	11.50	0.00	44.11	4.75
217	847	9.893305	AACTGAAAACGTAAAATTCATAGGAAG	57.107	29.630	0.00	0.00	36.25	3.46
239	869	6.963049	AGAAAGTATATTGTGACGGTGAAC	57.037	37.500	0.00	0.00	0.00	3.18
256	886	2.158740	TGAACCCGACAAAGTCAATCCA	60.159	45.455	0.00	0.00	32.09	3.41
259	889	2.224769	ACCCGACAAAGTCAATCCATGT	60.225	45.455	0.00	0.00	32.09	3.21
292	922	3.801114	AAAAAGACAGTTGGGTGCTTC	57.199	42.857	0.00	0.00	0.00	3.86
296	926	1.507141	GACAGTTGGGTGCTTCACGG	61.507	60.000	0.00	0.00	34.83	4.94
421	1062	6.143496	GTGATCTTGATCATGAATCATGCAC	58.857	40.000	17.81	12.93	43.87	4.57
475	1121	2.432628	CTTCCGCGCGGTCTTCTT	60.433	61.111	44.16	0.00	36.47	2.52
524	1171	4.787598	AGATGCAACACATTTCGAAGAAC	58.212	39.130	0.00	0.00	40.23	3.01
525	1172	3.347958	TGCAACACATTTCGAAGAACC	57.652	42.857	0.00	0.00	45.90	3.62
529	1176	2.828877	ACACATTTCGAAGAACCGACA	58.171	42.857	0.00	0.00	45.90	4.35
686	1392	2.666207	TGGATGCACCACGTACCC	59.334	61.111	4.16	0.00	44.64	3.69
873	1649	0.674581	TCATGCTGGTGCTGCTGTAC	60.675	55.000	0.00	3.17	40.48	2.90
914	1690	4.388499	GGGCGCCCTCGACTTTCA	62.388	66.667	38.76	0.00	44.85	2.69
915	1691	2.815647	GGCGCCCTCGACTTTCAG	60.816	66.667	18.11	0.00	41.47	3.02
921	1697	2.218603	GCCCTCGACTTTCAGTTTCAA	58.781	47.619	0.00	0.00	0.00	2.69
933	1709	2.357323	TCAGTTTCAATTTCAGCACGCA	59.643	40.909	0.00	0.00	0.00	5.24
934	1710	2.722629	CAGTTTCAATTTCAGCACGCAG	59.277	45.455	0.00	0.00	0.00	5.18
935	1711	1.453148	GTTTCAATTTCAGCACGCAGC	59.547	47.619	0.00	0.00	46.19	5.25
984	1782	2.834549	CTCCTCACTCTCTAGGCCAAAA	59.165	50.000	5.01	0.00	32.55	2.44
1086	1884	1.077787	GCCACCACGGGATTGATGA	60.078	57.895	0.00	0.00	34.06	2.92
1109	1907	2.106125	AGAGGGGCTGAAGGTCCTA	58.894	57.895	0.00	0.00	40.18	2.94
1214	2018	6.151817	GTCCATTAATATTGGATCTCTTGCCC	59.848	42.308	7.11	0.00	44.75	5.36
1657	2534	1.367346	TTGATGGACAAGCCCCTACA	58.633	50.000	0.00	0.00	34.97	2.74
1913	2793	3.887741	TGAATTGTTCGTCAATGCAGTG	58.112	40.909	8.08	8.08	44.50	3.66
1953	2833	2.361119	GGAGGTGCGTGAGATACATACA	59.639	50.000	0.00	0.00	0.00	2.29
1958	2838	6.578944	AGGTGCGTGAGATACATACAAAATA	58.421	36.000	0.00	0.00	0.00	1.40
1973	2853	7.545265	ACATACAAAATACATGCATGGTCAAAC	59.455	33.333	29.41	0.00	0.00	2.93
1984	2864	3.346315	CATGGTCAAACACAGGATAGCA	58.654	45.455	0.00	0.00	0.00	3.49
2096	3072	6.598064	GGGTGCTCACTACATGTTTTATAGTT	59.402	38.462	2.30	0.00	0.00	2.24
2275	3253	6.479972	TGAGTAGTATGGGATTGTAGGTTG	57.520	41.667	0.00	0.00	0.00	3.77
2331	3310	7.653767	ATTATTTCATTAGTAGGTGTAGCGC	57.346	36.000	0.00	0.00	0.00	5.92
2384	3387	9.504708	GTATATTAGGTAGCTCTGTAGACTTGA	57.495	37.037	0.00	0.00	0.00	3.02
2398	3401	0.916086	ACTTGAGTTGTGACACCCCA	59.084	50.000	2.45	0.00	0.00	4.96
2437	3466	1.388547	CACTCTCTTAGCGCTCCTCT	58.611	55.000	16.34	0.00	0.00	3.69
2438	3467	1.748493	CACTCTCTTAGCGCTCCTCTT	59.252	52.381	16.34	0.00	0.00	2.85
2439	3468	1.748493	ACTCTCTTAGCGCTCCTCTTG	59.252	52.381	16.34	4.33	0.00	3.02
2440	3469	0.457851	TCTCTTAGCGCTCCTCTTGC	59.542	55.000	16.34	0.00	0.00	4.01
2441	3470	0.459489	CTCTTAGCGCTCCTCTTGCT	59.541	55.000	16.34	0.00	42.58	3.91
2442	3471	0.457851	TCTTAGCGCTCCTCTTGCTC	59.542	55.000	16.34	0.00	40.06	4.26
2443	3472	0.529555	CTTAGCGCTCCTCTTGCTCC	60.530	60.000	16.34	0.00	40.06	4.70
2444	3473	1.961180	TTAGCGCTCCTCTTGCTCCC	61.961	60.000	16.34	0.00	40.06	4.30
2445	3474	4.847444	GCGCTCCTCTTGCTCCCC	62.847	72.222	0.00	0.00	0.00	4.81
2571	3601	0.974010	CCCGGTCAGCACCTACCTTA	60.974	60.000	0.00	0.00	41.17	2.69
2657	3689	0.919289	CTAGCCCTTTCCCTTCCCCA	60.919	60.000	0.00	0.00	0.00	4.96
2680	3712	4.020218	AGCTTTGACTACTGCAACCTCATA	60.020	41.667	0.00	0.00	0.00	2.15
2740	3772	3.503891	TCGCATCGATTTTCACGACTAA	58.496	40.909	0.00	0.00	42.37	2.24
2820	3852	0.528924	TCCCACAACGATCTACACCG	59.471	55.000	0.00	0.00	0.00	4.94
2950	3982	1.139853	CTCCTGGGTCTATGGCAGTTC	59.860	57.143	0.00	0.00	0.00	3.01
2985	4017	0.679505	ACGGCTGCAGTGTTTCTCTA	59.320	50.000	16.64	0.00	0.00	2.43
2986	4018	1.070134	ACGGCTGCAGTGTTTCTCTAA	59.930	47.619	16.64	0.00	0.00	2.10
2995	4027	4.080526	GCAGTGTTTCTCTAATTCCCCCTA	60.081	45.833	0.00	0.00	0.00	3.53

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	5.645067	CCATCAGCAGATTGTTAGAGAAACA	59.355	40.000	0.00	0.00	46.41	2.83
21	22	5.877012	TCCATCAGCAGATTGTTAGAGAAAC	59.123	40.000	0.00	0.00	33.54	2.78
22	23	5.877012	GTCCATCAGCAGATTGTTAGAGAAA	59.123	40.000	0.00	0.00	30.20	2.52
23	24	5.188555	AGTCCATCAGCAGATTGTTAGAGAA	59.811	40.000	0.00	0.00	30.20	2.87
24	25	4.713814	AGTCCATCAGCAGATTGTTAGAGA	59.286	41.667	0.00	0.00	30.20	3.10
25	26	4.809958	CAGTCCATCAGCAGATTGTTAGAG	59.190	45.833	0.00	0.00	30.20	2.43
26	27	4.383444	CCAGTCCATCAGCAGATTGTTAGA	60.383	45.833	0.00	0.00	30.20	2.10
27	28	3.875727	CCAGTCCATCAGCAGATTGTTAG	59.124	47.826	0.00	0.00	30.20	2.34
28	29	3.519107	TCCAGTCCATCAGCAGATTGTTA	59.481	43.478	0.00	0.00	30.20	2.41
29	30	2.306805	TCCAGTCCATCAGCAGATTGTT	59.693	45.455	0.00	0.00	30.20	2.83
30	31	1.911357	TCCAGTCCATCAGCAGATTGT	59.089	47.619	0.00	0.00	30.20	2.71
31	32	2.562635	CTCCAGTCCATCAGCAGATTG	58.437	52.381	0.00	0.00	30.20	2.67
32	33	1.134159	GCTCCAGTCCATCAGCAGATT	60.134	52.381	0.00	0.00	30.20	2.40
33	34	0.469070	GCTCCAGTCCATCAGCAGAT	59.531	55.000	0.00	0.00	33.87	2.90
34	35	0.906282	TGCTCCAGTCCATCAGCAGA	60.906	55.000	0.00	0.00	36.96	4.26
35	36	0.035725	TTGCTCCAGTCCATCAGCAG	60.036	55.000	0.00	0.00	42.66	4.24
36	37	0.035725	CTTGCTCCAGTCCATCAGCA	60.036	55.000	0.00	0.00	40.13	4.41
37	38	1.375098	GCTTGCTCCAGTCCATCAGC	61.375	60.000	0.00	0.00	0.00	4.26
38	39	0.747283	GGCTTGCTCCAGTCCATCAG	60.747	60.000	0.00	0.00	0.00	2.90
39	40	1.300963	GGCTTGCTCCAGTCCATCA	59.699	57.895	0.00	0.00	0.00	3.07
40	41	1.452833	GGGCTTGCTCCAGTCCATC	60.453	63.158	0.00	0.00	38.57	3.51
41	42	2.233566	TGGGCTTGCTCCAGTCCAT	61.234	57.895	0.81	0.00	44.03	3.41
42	43	2.853542	TGGGCTTGCTCCAGTCCA	60.854	61.111	0.81	0.81	46.85	4.02
43	44	2.045536	CTGGGCTTGCTCCAGTCC	60.046	66.667	16.61	2.24	44.97	3.85
66	67	0.321653	GCCACGAAGTCTCATTGGGT	60.322	55.000	0.00	0.00	41.61	4.51
92	722	2.483714	CGCTATGTGTGGTATGCTTCCT	60.484	50.000	0.00	0.00	0.00	3.36
163	793	0.600255	AAGCATATACGCGAGGTGGC	60.600	55.000	15.93	11.08	36.85	5.01
207	837	9.529325	CGTCACAATATACTTTCTTCCTATGAA	57.471	33.333	0.00	0.00	0.00	2.57
216	846	5.873164	GGTTCACCGTCACAATATACTTTCT	59.127	40.000	0.00	0.00	0.00	2.52
217	847	5.064325	GGGTTCACCGTCACAATATACTTTC	59.936	44.000	0.00	0.00	36.71	2.62
239	869	2.436417	ACATGGATTGACTTTGTCGGG	58.564	47.619	0.00	0.00	34.95	5.14
272	902	3.096092	TGAAGCACCCAACTGTCTTTTT	58.904	40.909	0.00	0.00	0.00	1.94
273	903	2.427095	GTGAAGCACCCAACTGTCTTTT	59.573	45.455	0.00	0.00	0.00	2.27
274	904	2.024414	GTGAAGCACCCAACTGTCTTT	58.976	47.619	0.00	0.00	0.00	2.52
280	910	0.470766	TAACCGTGAAGCACCCAACT	59.529	50.000	0.00	0.00	0.00	3.16
292	922	3.074412	AGATGGAAGCACTTTAACCGTG	58.926	45.455	0.00	0.78	35.53	4.94
296	926	6.560253	TCTTCAAGATGGAAGCACTTTAAC	57.440	37.500	0.00	0.00	43.14	2.01
421	1062	0.821517	TGTGTATGCTACAGGACCCG	59.178	55.000	0.00	0.00	39.77	5.28
475	1121	0.900182	AGCCGGTGTCATGTGAGAGA	60.900	55.000	1.90	0.00	0.00	3.10
524	1171	3.927142	GTGAGTTTGTATTCTCCTGTCGG	59.073	47.826	0.00	0.00	0.00	4.79
525	1172	3.927142	GGTGAGTTTGTATTCTCCTGTCG	59.073	47.826	0.00	0.00	0.00	4.35
529	1176	6.183361	ACTGAAAGGTGAGTTTGTATTCTCCT	60.183	38.462	0.00	0.00	39.30	3.69
564	1211	2.358737	GGACACGTGCCTCCAAGG	60.359	66.667	17.22	0.00	38.80	3.61
806	1529	4.946157	CAGCATGAGGAGACAAAACCTTAT	59.054	41.667	0.00	0.00	39.69	1.73
914	1690	2.859806	GCTGCGTGCTGAAATTGAAACT	60.860	45.455	2.69	0.00	38.95	2.66
915	1691	1.453148	GCTGCGTGCTGAAATTGAAAC	59.547	47.619	2.69	0.00	38.95	2.78
921	1697	2.034687	AGGGCTGCGTGCTGAAAT	59.965	55.556	2.69	0.00	42.39	2.17
933	1709	2.168728	CGCCTAGAAAAAGTAGAGGGCT	59.831	50.000	0.00	0.00	36.58	5.19
934	1710	2.167900	TCGCCTAGAAAAAGTAGAGGGC	59.832	50.000	0.00	0.00	35.53	5.19
935	1711	3.700038	TCTCGCCTAGAAAAAGTAGAGGG	59.300	47.826	0.00	0.00	0.00	4.30
984	1782	2.356313	CGTCAAGGCTGAGCGTGT	60.356	61.111	0.00	0.00	30.14	4.49
1078	1876	2.172293	AGCCCCTCTGTCTTCATCAATC	59.828	50.000	0.00	0.00	0.00	2.67
1086	1884	0.474660	ACCTTCAGCCCCTCTGTCTT	60.475	55.000	0.00	0.00	43.32	3.01
1109	1907	1.826024	GGGATCATCGTCCACAGCT	59.174	57.895	0.00	0.00	40.17	4.24
1214	2018	3.378112	TCAGAACACAAAGAGCAAACTGG	59.622	43.478	0.00	0.00	0.00	4.00
1279	2098	1.134699	CCACCTCTTTCAGCGCATCTA	60.135	52.381	11.47	0.00	0.00	1.98
1347	2172	2.365105	GTCCATCCCTCGTCCCCA	60.365	66.667	0.00	0.00	0.00	4.96
1657	2534	6.155136	CAGATGAAGTATATCTGCACGTCAT	58.845	40.000	4.95	4.95	43.38	3.06
1910	2790	2.438021	TGTTGTCTTTAGCTGGGTCACT	59.562	45.455	0.00	0.00	0.00	3.41
1913	2793	2.038557	TCCTGTTGTCTTTAGCTGGGTC	59.961	50.000	0.00	0.00	0.00	4.46
1953	2833	5.851720	TGTGTTTGACCATGCATGTATTTT	58.148	33.333	24.58	3.99	0.00	1.82
1958	2838	1.614903	CCTGTGTTTGACCATGCATGT	59.385	47.619	24.58	13.09	0.00	3.21
1973	2853	2.679837	GTCCACATGTTGCTATCCTGTG	59.320	50.000	0.00	0.00	37.53	3.66
1984	2864	5.835280	AGAAAGAAAAGATGGTCCACATGTT	59.165	36.000	0.00	0.00	44.16	2.71
2096	3072	9.961264	CCACATATCTCTATCTAGTAGTACCAA	57.039	37.037	0.00	0.00	0.00	3.67
2114	3090	2.754552	TCAGCAAGTTTGGCCACATATC	59.245	45.455	3.88	0.00	0.00	1.63
2275	3253	6.478512	TCCAACCAAGCCAAAATATATTCC	57.521	37.500	0.00	0.00	0.00	3.01
2331	3310	4.803613	TGTCATCGATTCAATGAGTTACCG	59.196	41.667	0.00	0.00	33.94	4.02
2384	3387	1.004745	GGATGATGGGGTGTCACAACT	59.995	52.381	5.12	0.00	0.00	3.16
2443	3472	4.489771	GATGTGGTGAGGGCCGGG	62.490	72.222	2.18	0.00	0.00	5.73
2444	3473	4.489771	GGATGTGGTGAGGGCCGG	62.490	72.222	0.00	0.00	0.00	6.13
2445	3474	4.489771	GGGATGTGGTGAGGGCCG	62.490	72.222	0.00	0.00	0.00	6.13
2657	3689	2.104792	TGAGGTTGCAGTAGTCAAAGCT	59.895	45.455	0.00	0.00	0.00	3.74
2680	3712	1.745087	GTCAATGCACCGATGACCAAT	59.255	47.619	10.91	0.00	37.97	3.16
2820	3852	1.681327	TGGAGGAGGCTACGACCAC	60.681	63.158	13.23	0.00	0.00	4.16
2985	4017	0.562674	CCCAGGCATTAGGGGGAATT	59.437	55.000	0.00	0.00	43.57	2.17
2986	4018	0.329434	TCCCAGGCATTAGGGGGAAT	60.329	55.000	0.00	0.00	46.36	3.01
2995	4027	1.228862	GTTGGTGGTCCCAGGCATT	60.229	57.895	0.00	0.00	46.31	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.