Multiple sequence alignment - TraesCS6A01G010800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G010800 chr6A 100.000 4604 0 0 1 4604 5070554 5075157 0.000000e+00 8503
1 TraesCS6A01G010800 chr6A 84.834 2110 269 34 1195 3296 4412989 4410923 0.000000e+00 2076
2 TraesCS6A01G010800 chr6A 84.685 2109 275 31 1195 3296 4354661 4352594 0.000000e+00 2061
3 TraesCS6A01G010800 chr6A 86.129 1550 193 14 1195 2740 4234266 4232735 0.000000e+00 1652
4 TraesCS6A01G010800 chr6A 82.941 510 66 10 3521 4021 18889210 18888713 1.520000e-119 440
5 TraesCS6A01G010800 chr6A 79.452 292 37 14 885 1165 4384812 4385091 7.870000e-43 185
6 TraesCS6A01G010800 chr6A 78.767 292 41 13 884 1165 4264798 4265078 4.730000e-40 176
7 TraesCS6A01G010800 chr6A 78.966 290 38 14 885 1163 4330360 4330637 4.730000e-40 176
8 TraesCS6A01G010800 chr6A 93.671 79 4 1 4527 4604 219553446 219553368 2.910000e-22 117
9 TraesCS6A01G010800 chr6D 81.340 3328 429 91 742 4021 18777516 18774333 0.000000e+00 2529
10 TraesCS6A01G010800 chr6D 83.725 2722 320 69 1257 3949 5589077 5591704 0.000000e+00 2459
11 TraesCS6A01G010800 chr6D 86.542 1932 235 15 1195 3124 13820911 13822819 0.000000e+00 2104
12 TraesCS6A01G010800 chr6D 89.231 650 49 14 1 634 325700666 325700022 0.000000e+00 793
13 TraesCS6A01G010800 chr6D 92.857 308 17 2 4219 4526 5592843 5593145 4.230000e-120 442
14 TraesCS6A01G010800 chr6D 90.854 164 15 0 4363 4526 5110080 5109917 2.160000e-53 220
15 TraesCS6A01G010800 chr6D 84.746 177 21 5 741 913 5588806 5588980 6.120000e-39 172
16 TraesCS6A01G010800 chr6D 90.000 60 2 3 4138 4194 5110430 5110372 1.780000e-09 75
17 TraesCS6A01G010800 chr6B 82.940 2626 314 59 706 3295 9458310 9460837 0.000000e+00 2244
18 TraesCS6A01G010800 chr6B 91.292 356 30 1 2712 3067 9434044 9434398 6.930000e-133 484
19 TraesCS6A01G010800 chr6B 91.292 356 30 1 2712 3067 9445098 9445452 6.930000e-133 484
20 TraesCS6A01G010800 chr6B 80.259 309 43 16 683 986 10853553 10853258 2.790000e-52 217
21 TraesCS6A01G010800 chrUn 85.261 2110 261 33 1195 3296 62593114 62595181 0.000000e+00 2128
22 TraesCS6A01G010800 chrUn 84.929 2110 268 33 1195 3296 62536699 62538766 0.000000e+00 2089
23 TraesCS6A01G010800 chrUn 84.747 2111 270 35 1195 3296 62464689 62466756 0.000000e+00 2067
24 TraesCS6A01G010800 chrUn 84.408 2110 279 32 1195 3296 62408834 62410901 0.000000e+00 2028
25 TraesCS6A01G010800 chrUn 88.167 431 50 1 2638 3068 75882477 75882906 3.180000e-141 512
26 TraesCS6A01G010800 chrUn 88.167 431 50 1 2638 3068 321505235 321504806 3.180000e-141 512
27 TraesCS6A01G010800 chrUn 78.976 371 49 16 813 1165 62563271 62562912 4.630000e-55 226
28 TraesCS6A01G010800 chrUn 79.110 292 38 14 885 1165 62434710 62434431 3.660000e-41 180
29 TraesCS6A01G010800 chrUn 79.110 292 38 14 885 1165 62503232 62502953 3.660000e-41 180
30 TraesCS6A01G010800 chrUn 78.767 292 39 14 885 1165 62317698 62317419 1.700000e-39 174
31 TraesCS6A01G010800 chr2A 98.262 633 10 1 1 633 152001698 152001067 0.000000e+00 1107
32 TraesCS6A01G010800 chr2A 82.077 809 92 21 2566 3372 6378086 6378843 3.880000e-180 641
33 TraesCS6A01G010800 chr2A 91.981 212 11 4 3768 3975 24415852 24415643 4.510000e-75 292
34 TraesCS6A01G010800 chr2A 89.881 168 10 2 3558 3725 756527080 756526920 4.670000e-50 209
35 TraesCS6A01G010800 chr2A 85.345 116 16 1 3878 3992 764886718 764886603 8.090000e-23 119
36 TraesCS6A01G010800 chr2A 93.506 77 3 1 4528 4604 758383972 758383898 3.760000e-21 113
37 TraesCS6A01G010800 chr2A 93.506 77 2 1 4528 4604 38569099 38569026 1.350000e-20 111
38 TraesCS6A01G010800 chr2A 93.506 77 2 1 4528 4604 720315853 720315926 1.350000e-20 111
39 TraesCS6A01G010800 chr3A 96.313 651 6 3 1 635 18248738 18248090 0.000000e+00 1053
40 TraesCS6A01G010800 chr3A 95.975 646 9 2 1 630 734133925 734133281 0.000000e+00 1033
41 TraesCS6A01G010800 chr3A 95.807 644 10 10 1 628 550995234 550995876 0.000000e+00 1024
42 TraesCS6A01G010800 chr3A 94.937 79 3 1 4526 4604 729639819 729639742 6.260000e-24 122
43 TraesCS6A01G010800 chr2D 85.648 864 109 12 2614 3470 22825219 22824364 0.000000e+00 894
44 TraesCS6A01G010800 chr2D 85.870 460 47 7 3516 3970 22823855 22823409 1.500000e-129 473
45 TraesCS6A01G010800 chr5D 90.640 641 43 10 1 629 432135779 432135144 0.000000e+00 835
46 TraesCS6A01G010800 chr5D 84.483 116 17 1 3878 3992 445018587 445018702 3.760000e-21 113
47 TraesCS6A01G010800 chr5D 84.483 116 17 1 3878 3992 510560202 510560087 3.760000e-21 113
48 TraesCS6A01G010800 chr5D 91.139 79 5 2 4526 4604 495290030 495289954 6.300000e-19 106
49 TraesCS6A01G010800 chr3D 90.031 642 45 12 1 628 121671211 121670575 0.000000e+00 813
50 TraesCS6A01G010800 chr3D 92.208 77 5 1 4528 4604 191573940 191574015 1.750000e-19 108
51 TraesCS6A01G010800 chr1D 89.860 641 47 11 1 628 316628675 316628040 0.000000e+00 808
52 TraesCS6A01G010800 chr1D 89.302 645 45 15 6 635 13201373 13200738 0.000000e+00 787
53 TraesCS6A01G010800 chr4A 99.020 408 3 1 1 407 584409998 584409591 0.000000e+00 730
54 TraesCS6A01G010800 chr4A 94.937 237 11 1 396 632 584409254 584409019 2.020000e-98 370
55 TraesCS6A01G010800 chr7A 82.077 809 89 18 2566 3372 119835815 119836569 1.400000e-179 640
56 TraesCS6A01G010800 chr7A 90.476 168 9 2 3558 3725 41462185 41462345 1.000000e-51 215
57 TraesCS6A01G010800 chr7A 90.476 168 9 2 3558 3725 617601112 617600952 1.000000e-51 215
58 TraesCS6A01G010800 chr7A 85.345 116 16 1 3878 3992 576789135 576789250 8.090000e-23 119
59 TraesCS6A01G010800 chr7A 85.345 116 16 1 3878 3992 658275899 658275784 8.090000e-23 119
60 TraesCS6A01G010800 chr1A 81.953 809 93 26 2566 3372 374715627 374716384 1.810000e-178 636
61 TraesCS6A01G010800 chr5A 81.857 711 84 11 2663 3372 131075412 131076078 1.450000e-154 556
62 TraesCS6A01G010800 chr1B 77.056 462 54 25 3558 3992 680993041 680992605 7.760000e-53 219
63 TraesCS6A01G010800 chr1B 90.476 168 10 1 3558 3725 539831008 539830847 2.790000e-52 217
64 TraesCS6A01G010800 chr3B 88.757 169 13 3 3557 3725 775655740 775655902 7.810000e-48 202
65 TraesCS6A01G010800 chr3B 93.506 77 2 2 4527 4603 667641752 667641679 1.350000e-20 111
66 TraesCS6A01G010800 chr5B 92.500 80 2 1 4525 4604 568815943 568815868 1.350000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G010800 chr6A 5070554 5075157 4603 False 8503.000000 8503 100.000000 1 4604 1 chr6A.!!$F4 4603
1 TraesCS6A01G010800 chr6A 4410923 4412989 2066 True 2076.000000 2076 84.834000 1195 3296 1 chr6A.!!$R3 2101
2 TraesCS6A01G010800 chr6A 4352594 4354661 2067 True 2061.000000 2061 84.685000 1195 3296 1 chr6A.!!$R2 2101
3 TraesCS6A01G010800 chr6A 4232735 4234266 1531 True 1652.000000 1652 86.129000 1195 2740 1 chr6A.!!$R1 1545
4 TraesCS6A01G010800 chr6D 18774333 18777516 3183 True 2529.000000 2529 81.340000 742 4021 1 chr6D.!!$R1 3279
5 TraesCS6A01G010800 chr6D 13820911 13822819 1908 False 2104.000000 2104 86.542000 1195 3124 1 chr6D.!!$F1 1929
6 TraesCS6A01G010800 chr6D 5588806 5593145 4339 False 1024.333333 2459 87.109333 741 4526 3 chr6D.!!$F2 3785
7 TraesCS6A01G010800 chr6D 325700022 325700666 644 True 793.000000 793 89.231000 1 634 1 chr6D.!!$R2 633
8 TraesCS6A01G010800 chr6B 9458310 9460837 2527 False 2244.000000 2244 82.940000 706 3295 1 chr6B.!!$F3 2589
9 TraesCS6A01G010800 chrUn 62593114 62595181 2067 False 2128.000000 2128 85.261000 1195 3296 1 chrUn.!!$F4 2101
10 TraesCS6A01G010800 chrUn 62536699 62538766 2067 False 2089.000000 2089 84.929000 1195 3296 1 chrUn.!!$F3 2101
11 TraesCS6A01G010800 chrUn 62464689 62466756 2067 False 2067.000000 2067 84.747000 1195 3296 1 chrUn.!!$F2 2101
12 TraesCS6A01G010800 chrUn 62408834 62410901 2067 False 2028.000000 2028 84.408000 1195 3296 1 chrUn.!!$F1 2101
13 TraesCS6A01G010800 chr2A 152001067 152001698 631 True 1107.000000 1107 98.262000 1 633 1 chr2A.!!$R3 632
14 TraesCS6A01G010800 chr2A 6378086 6378843 757 False 641.000000 641 82.077000 2566 3372 1 chr2A.!!$F1 806
15 TraesCS6A01G010800 chr3A 18248090 18248738 648 True 1053.000000 1053 96.313000 1 635 1 chr3A.!!$R1 634
16 TraesCS6A01G010800 chr3A 734133281 734133925 644 True 1033.000000 1033 95.975000 1 630 1 chr3A.!!$R3 629
17 TraesCS6A01G010800 chr3A 550995234 550995876 642 False 1024.000000 1024 95.807000 1 628 1 chr3A.!!$F1 627
18 TraesCS6A01G010800 chr2D 22823409 22825219 1810 True 683.500000 894 85.759000 2614 3970 2 chr2D.!!$R1 1356
19 TraesCS6A01G010800 chr5D 432135144 432135779 635 True 835.000000 835 90.640000 1 629 1 chr5D.!!$R1 628
20 TraesCS6A01G010800 chr3D 121670575 121671211 636 True 813.000000 813 90.031000 1 628 1 chr3D.!!$R1 627
21 TraesCS6A01G010800 chr1D 316628040 316628675 635 True 808.000000 808 89.860000 1 628 1 chr1D.!!$R2 627
22 TraesCS6A01G010800 chr1D 13200738 13201373 635 True 787.000000 787 89.302000 6 635 1 chr1D.!!$R1 629
23 TraesCS6A01G010800 chr4A 584409019 584409998 979 True 550.000000 730 96.978500 1 632 2 chr4A.!!$R1 631
24 TraesCS6A01G010800 chr7A 119835815 119836569 754 False 640.000000 640 82.077000 2566 3372 1 chr7A.!!$F2 806
25 TraesCS6A01G010800 chr1A 374715627 374716384 757 False 636.000000 636 81.953000 2566 3372 1 chr1A.!!$F1 806
26 TraesCS6A01G010800 chr5A 131075412 131076078 666 False 556.000000 556 81.857000 2663 3372 1 chr5A.!!$F1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 1019 0.041090 AATGGGCCCCTACTGTTTGG 59.959 55.0 22.27 0.00 0.00 3.28 F
1166 1588 0.107263 TCCATTATCGGCTGCAGCAA 60.107 50.0 37.63 25.98 44.36 3.91 F
1490 1922 0.313043 GTGGTTGGTCTCGTCGAAGA 59.687 55.0 0.03 0.03 0.00 2.87 F
2281 2723 0.388649 ATCACACGCTTGAGGACGAC 60.389 55.0 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 3048 0.034896 AAGCAGACTACCCACCGTTG 59.965 55.000 0.0 0.0 0.00 4.10 R
2599 3049 0.034896 CAAGCAGACTACCCACCGTT 59.965 55.000 0.0 0.0 0.00 4.44 R
2602 3052 0.396811 ACACAAGCAGACTACCCACC 59.603 55.000 0.0 0.0 0.00 4.61 R
3758 4735 1.066143 GGATATGGGTACATGCTCCGG 60.066 57.143 0.0 0.0 37.97 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
441 809 4.761235 CAAGAATGCAGTGACAAGTCAT 57.239 40.909 6.15 0.00 42.18 3.06
500 868 7.041107 CAGATTCCAAAACTTGTTTCCTTTGA 58.959 34.615 0.00 0.00 31.77 2.69
539 908 4.346709 GGTTCCCATTCCTCTTTTTGGAAA 59.653 41.667 0.00 0.00 45.38 3.13
569 940 0.842030 TCCACTTGGCACTCCATCCT 60.842 55.000 0.00 0.00 43.05 3.24
597 968 7.452562 ACCTATGCATTTTTCAAATCCTTTGT 58.547 30.769 3.54 0.00 41.36 2.83
634 1005 0.751643 CCGAACAGGGCCTAAATGGG 60.752 60.000 5.28 2.06 35.97 4.00
641 1012 4.923068 GCCTAAATGGGCCCCTAC 57.077 61.111 22.27 0.00 45.92 3.18
642 1013 2.241502 GCCTAAATGGGCCCCTACT 58.758 57.895 22.27 3.33 45.92 2.57
643 1014 0.178990 GCCTAAATGGGCCCCTACTG 60.179 60.000 22.27 6.77 45.92 2.74
644 1015 1.222567 CCTAAATGGGCCCCTACTGT 58.777 55.000 22.27 0.49 0.00 3.55
645 1016 1.569072 CCTAAATGGGCCCCTACTGTT 59.431 52.381 22.27 2.80 0.00 3.16
646 1017 2.024369 CCTAAATGGGCCCCTACTGTTT 60.024 50.000 22.27 12.67 0.00 2.83
647 1018 1.937191 AAATGGGCCCCTACTGTTTG 58.063 50.000 22.27 0.00 0.00 2.93
648 1019 0.041090 AATGGGCCCCTACTGTTTGG 59.959 55.000 22.27 0.00 0.00 3.28
649 1020 0.849094 ATGGGCCCCTACTGTTTGGA 60.849 55.000 22.27 0.00 0.00 3.53
650 1021 1.001269 GGGCCCCTACTGTTTGGAC 60.001 63.158 12.23 0.00 0.00 4.02
651 1022 1.001269 GGCCCCTACTGTTTGGACC 60.001 63.158 0.00 0.00 0.00 4.46
652 1023 1.765074 GCCCCTACTGTTTGGACCA 59.235 57.895 0.00 0.00 0.00 4.02
653 1024 0.111639 GCCCCTACTGTTTGGACCAA 59.888 55.000 1.69 1.69 0.00 3.67
654 1025 1.479757 GCCCCTACTGTTTGGACCAAA 60.480 52.381 15.89 15.89 0.00 3.28
662 1033 2.819477 TTTGGACCAAACAGGCTGG 58.181 52.632 20.34 3.94 43.14 4.85
663 1034 0.260230 TTTGGACCAAACAGGCTGGA 59.740 50.000 20.34 0.00 43.14 3.86
664 1035 0.467290 TTGGACCAAACAGGCTGGAC 60.467 55.000 20.34 1.75 43.14 4.02
665 1036 1.603739 GGACCAAACAGGCTGGACC 60.604 63.158 20.34 7.85 43.14 4.46
677 1048 2.157738 GGCTGGACCTGAATGATATGC 58.842 52.381 1.91 0.00 34.51 3.14
678 1049 2.224719 GGCTGGACCTGAATGATATGCT 60.225 50.000 1.91 0.00 34.51 3.79
679 1050 3.072944 GCTGGACCTGAATGATATGCTC 58.927 50.000 1.91 0.00 0.00 4.26
680 1051 3.495629 GCTGGACCTGAATGATATGCTCA 60.496 47.826 1.91 0.00 38.53 4.26
681 1052 4.316645 CTGGACCTGAATGATATGCTCAG 58.683 47.826 0.00 0.00 37.28 3.35
682 1053 3.713248 TGGACCTGAATGATATGCTCAGT 59.287 43.478 0.00 0.00 37.28 3.41
683 1054 4.202295 TGGACCTGAATGATATGCTCAGTC 60.202 45.833 0.00 0.00 46.66 3.51
689 1060 2.584492 TGATATGCTCAGTCACACCG 57.416 50.000 0.00 0.00 0.00 4.94
690 1061 2.099405 TGATATGCTCAGTCACACCGA 58.901 47.619 0.00 0.00 0.00 4.69
691 1062 2.159240 TGATATGCTCAGTCACACCGAC 60.159 50.000 0.00 0.00 45.77 4.79
698 1069 2.342648 GTCACACCGACACTCCCC 59.657 66.667 0.00 0.00 44.69 4.81
699 1070 2.200370 TCACACCGACACTCCCCT 59.800 61.111 0.00 0.00 0.00 4.79
700 1071 2.207229 TCACACCGACACTCCCCTG 61.207 63.158 0.00 0.00 0.00 4.45
701 1072 3.626924 ACACCGACACTCCCCTGC 61.627 66.667 0.00 0.00 0.00 4.85
702 1073 4.394712 CACCGACACTCCCCTGCC 62.395 72.222 0.00 0.00 0.00 4.85
711 1082 4.285790 TCCCCTGCCCCCTCACTT 62.286 66.667 0.00 0.00 0.00 3.16
715 1086 2.227036 CCTGCCCCCTCACTTCACT 61.227 63.158 0.00 0.00 0.00 3.41
729 1100 0.539669 TTCACTCGCTCCAGTCTCCA 60.540 55.000 0.00 0.00 0.00 3.86
759 1130 2.032681 GCAGTGGCCGGAAGAAGT 59.967 61.111 5.05 0.00 0.00 3.01
770 1141 1.301716 GAAGAAGTGACAGGCGCCA 60.302 57.895 31.54 4.11 0.00 5.69
778 1149 1.377202 GACAGGCGCCAGGATTTCA 60.377 57.895 31.54 0.00 0.00 2.69
801 1172 3.838271 GATCTGAGCCCGTCCGCA 61.838 66.667 0.00 0.00 0.00 5.69
837 1210 1.338655 GTCTCCAGATCCGAGGTTAGC 59.661 57.143 7.40 0.00 0.00 3.09
862 1240 3.768878 TCTCCTTCCCCGATCTATTCTC 58.231 50.000 0.00 0.00 0.00 2.87
916 1294 2.050918 GGGATCAAACCCTAGCTAGCT 58.949 52.381 23.12 23.12 45.90 3.32
917 1295 2.439880 GGGATCAAACCCTAGCTAGCTT 59.560 50.000 24.88 7.25 45.90 3.74
918 1296 3.646637 GGGATCAAACCCTAGCTAGCTTA 59.353 47.826 24.88 8.09 45.90 3.09
919 1297 4.262678 GGGATCAAACCCTAGCTAGCTTAG 60.263 50.000 24.88 16.82 45.90 2.18
986 1367 0.391228 TTCTACGGCAGTGTTCAGCA 59.609 50.000 0.00 0.00 0.00 4.41
987 1368 0.391228 TCTACGGCAGTGTTCAGCAA 59.609 50.000 0.00 0.00 0.00 3.91
1022 1415 0.810823 GATGCTGCTGCTGAGGAGTC 60.811 60.000 17.00 0.00 39.80 3.36
1056 1458 3.826729 GGCCATGGTAAGTTCCAATATCC 59.173 47.826 14.67 0.00 41.09 2.59
1057 1459 4.469657 GCCATGGTAAGTTCCAATATCCA 58.530 43.478 14.67 0.00 41.09 3.41
1058 1460 4.892934 GCCATGGTAAGTTCCAATATCCAA 59.107 41.667 14.67 0.00 41.09 3.53
1059 1461 5.010012 GCCATGGTAAGTTCCAATATCCAAG 59.990 44.000 14.67 0.00 41.09 3.61
1060 1462 5.536161 CCATGGTAAGTTCCAATATCCAAGG 59.464 44.000 2.57 0.00 41.09 3.61
1061 1463 5.789574 TGGTAAGTTCCAATATCCAAGGT 57.210 39.130 0.00 0.00 34.24 3.50
1062 1464 5.505780 TGGTAAGTTCCAATATCCAAGGTG 58.494 41.667 0.00 0.00 34.24 4.00
1063 1465 4.338400 GGTAAGTTCCAATATCCAAGGTGC 59.662 45.833 0.00 0.00 0.00 5.01
1073 1475 1.967319 TCCAAGGTGCACTCTGTTTC 58.033 50.000 17.98 0.00 0.00 2.78
1076 1478 2.233271 CAAGGTGCACTCTGTTTCCAT 58.767 47.619 17.98 0.00 0.00 3.41
1089 1491 1.412343 GTTTCCATGGTTGGTGCACTT 59.588 47.619 17.98 0.00 44.06 3.16
1095 1497 2.663826 TGGTTGGTGCACTTTGTTTC 57.336 45.000 17.98 0.00 0.00 2.78
1096 1498 1.205893 TGGTTGGTGCACTTTGTTTCC 59.794 47.619 17.98 10.14 0.00 3.13
1097 1499 1.205893 GGTTGGTGCACTTTGTTTCCA 59.794 47.619 17.98 0.00 0.00 3.53
1100 1502 1.411977 TGGTGCACTTTGTTTCCATGG 59.588 47.619 17.98 4.97 0.00 3.66
1101 1503 1.412343 GGTGCACTTTGTTTCCATGGT 59.588 47.619 17.98 0.00 0.00 3.55
1105 1507 2.158971 GCACTTTGTTTCCATGGTTGGT 60.159 45.455 12.58 0.00 44.06 3.67
1106 1508 3.456280 CACTTTGTTTCCATGGTTGGTG 58.544 45.455 12.58 8.61 44.06 4.17
1108 1510 1.489481 TTGTTTCCATGGTTGGTGCA 58.511 45.000 12.58 1.14 44.06 4.57
1109 1511 0.749649 TGTTTCCATGGTTGGTGCAC 59.250 50.000 12.58 8.80 44.06 4.57
1110 1512 1.039856 GTTTCCATGGTTGGTGCACT 58.960 50.000 17.98 0.00 44.06 4.40
1112 1514 1.786937 TTCCATGGTTGGTGCACTTT 58.213 45.000 17.98 0.00 44.06 2.66
1113 1515 1.039068 TCCATGGTTGGTGCACTTTG 58.961 50.000 17.98 5.65 44.06 2.77
1115 1517 1.538634 CCATGGTTGGTGCACTTTGTG 60.539 52.381 17.98 8.41 38.30 3.33
1116 1518 1.136695 CATGGTTGGTGCACTTTGTGT 59.863 47.619 17.98 0.00 35.75 3.72
1117 1519 0.814457 TGGTTGGTGCACTTTGTGTC 59.186 50.000 17.98 0.00 35.75 3.67
1121 1532 1.093972 TGGTGCACTTTGTGTCTGTG 58.906 50.000 17.98 0.00 35.75 3.66
1140 1551 0.590195 GATGGATGGACGAATGCTGC 59.410 55.000 0.00 0.00 0.00 5.25
1145 1556 1.594862 GATGGACGAATGCTGCTGTAC 59.405 52.381 0.00 0.00 0.00 2.90
1151 1562 1.656652 GAATGCTGCTGTACGTCCAT 58.343 50.000 0.00 0.00 0.00 3.41
1158 1580 1.137513 GCTGTACGTCCATTATCGGC 58.862 55.000 0.00 0.00 0.00 5.54
1161 1583 1.137513 GTACGTCCATTATCGGCTGC 58.862 55.000 0.00 0.00 0.00 5.25
1162 1584 0.747852 TACGTCCATTATCGGCTGCA 59.252 50.000 0.50 0.00 0.00 4.41
1163 1585 0.530650 ACGTCCATTATCGGCTGCAG 60.531 55.000 10.11 10.11 0.00 4.41
1166 1588 0.107263 TCCATTATCGGCTGCAGCAA 60.107 50.000 37.63 25.98 44.36 3.91
1169 1591 1.132834 CATTATCGGCTGCAGCAACAA 59.867 47.619 37.63 24.73 44.36 2.83
1177 1599 2.925563 GGCTGCAGCAACAACATTATTC 59.074 45.455 37.63 13.61 44.36 1.75
1186 1608 6.086765 CAGCAACAACATTATTCGTTCAAGAC 59.913 38.462 0.00 0.00 0.00 3.01
1187 1609 5.912396 GCAACAACATTATTCGTTCAAGACA 59.088 36.000 0.00 0.00 0.00 3.41
1192 1614 6.817765 ACATTATTCGTTCAAGACATTGGT 57.182 33.333 0.00 0.00 37.02 3.67
1206 1632 3.755378 GACATTGGTATGATGCCCATCTC 59.245 47.826 9.44 0.00 38.60 2.75
1245 1677 4.095590 CCCATTTTGCAGGGTCGT 57.904 55.556 0.44 0.00 40.34 4.34
1248 1680 0.808755 CCATTTTGCAGGGTCGTACC 59.191 55.000 0.00 0.00 37.60 3.34
1251 1683 2.279935 TTTTGCAGGGTCGTACCATT 57.720 45.000 6.41 0.00 41.02 3.16
1255 1687 1.202830 TGCAGGGTCGTACCATTTGTT 60.203 47.619 6.41 0.00 41.02 2.83
1289 1721 2.124570 AGCCAGCCAATGCCGTAG 60.125 61.111 0.00 0.00 38.69 3.51
1301 1733 2.359967 GCCGTAGCCAAGGTCCTCT 61.360 63.158 0.00 0.00 0.00 3.69
1419 1851 2.726351 CCGACCCTGCCTTCCTCTC 61.726 68.421 0.00 0.00 0.00 3.20
1420 1852 1.684049 CGACCCTGCCTTCCTCTCT 60.684 63.158 0.00 0.00 0.00 3.10
1446 1878 2.352805 CAAGCTCCACCCACCCTC 59.647 66.667 0.00 0.00 0.00 4.30
1463 1895 2.067386 CCTCCCTCCTAGGCTACTACT 58.933 57.143 2.96 0.00 32.73 2.57
1476 1908 3.764972 GGCTACTACTTCTCTGAGTGGTT 59.235 47.826 4.32 0.00 41.02 3.67
1481 1913 2.683768 ACTTCTCTGAGTGGTTGGTCT 58.316 47.619 4.32 0.00 0.00 3.85
1487 1919 0.820482 TGAGTGGTTGGTCTCGTCGA 60.820 55.000 0.00 0.00 33.88 4.20
1490 1922 0.313043 GTGGTTGGTCTCGTCGAAGA 59.687 55.000 0.03 0.03 0.00 2.87
1492 1924 1.616865 TGGTTGGTCTCGTCGAAGAAT 59.383 47.619 1.95 0.00 39.69 2.40
1514 1946 4.081050 GTGCTCCACCCTTTCACC 57.919 61.111 0.00 0.00 0.00 4.02
1520 1953 2.369394 CTCCACCCTTTCACCTAATGC 58.631 52.381 0.00 0.00 0.00 3.56
1545 1984 2.749441 GCCCCTGCTGCAAGAGTC 60.749 66.667 3.02 0.00 34.07 3.36
1550 1989 1.268899 CCCTGCTGCAAGAGTCTTTTG 59.731 52.381 1.56 0.00 34.07 2.44
1554 1993 1.321474 CTGCAAGAGTCTTTTGGCCA 58.679 50.000 0.00 0.00 34.07 5.36
1569 2008 2.610501 CCATGCCCCCATCACCAT 59.389 61.111 0.00 0.00 0.00 3.55
1580 2019 2.509548 CCCATCACCATCCACCTTTCTA 59.490 50.000 0.00 0.00 0.00 2.10
1581 2020 3.434167 CCCATCACCATCCACCTTTCTAG 60.434 52.174 0.00 0.00 0.00 2.43
1627 2066 3.655211 CCCCCAGAGCTTGCCACT 61.655 66.667 0.00 0.00 0.00 4.00
1671 2110 1.183030 AGGTTCGGTGTCCACGATGA 61.183 55.000 0.00 0.00 40.38 2.92
1696 2135 2.502947 TCTACTGATCAAGCACTGCCAT 59.497 45.455 0.00 0.00 0.00 4.40
1720 2159 0.682209 GCACCATCTTCACCCAGCAT 60.682 55.000 0.00 0.00 0.00 3.79
1831 2270 2.231235 GGAACGCAATCTCCAATGGTTT 59.769 45.455 0.00 0.00 0.00 3.27
1855 2294 2.224843 TGCAATGCTCTCCAAAGAAGGA 60.225 45.455 6.82 0.00 36.00 3.36
1859 2298 1.421268 TGCTCTCCAAAGAAGGAAGCA 59.579 47.619 12.52 12.52 43.23 3.91
1950 2390 2.100584 TGTTGCAAGATGGTGTTTGGTC 59.899 45.455 0.00 0.00 0.00 4.02
1953 2393 1.256812 CAAGATGGTGTTTGGTCCCC 58.743 55.000 0.00 0.00 0.00 4.81
1955 2395 1.131303 AGATGGTGTTTGGTCCCCGA 61.131 55.000 0.00 0.00 0.00 5.14
2036 2478 6.317642 TGTTGACAACAAAATCTATATCCCGG 59.682 38.462 18.56 0.00 38.72 5.73
2039 2481 3.434940 ACAAAATCTATATCCCGGCCC 57.565 47.619 0.00 0.00 0.00 5.80
2057 2499 2.327568 CCCGCAACAATGACAACATTC 58.672 47.619 0.00 0.00 43.76 2.67
2073 2515 7.014518 TGACAACATTCTTGTCTTGGATTTGAT 59.985 33.333 13.00 0.00 46.53 2.57
2082 2524 4.761739 TGTCTTGGATTTGATGACCTCAAC 59.238 41.667 0.00 0.00 43.54 3.18
2138 2580 8.622948 AAGCTATAACTATTTTAGGACCATGC 57.377 34.615 0.00 0.00 0.00 4.06
2223 2665 1.301293 GGCTCTCCAAGGGGAACAG 59.699 63.158 0.00 0.00 44.38 3.16
2230 2672 0.404040 CCAAGGGGAACAGCTGGTTA 59.596 55.000 19.93 0.00 40.63 2.85
2281 2723 0.388649 ATCACACGCTTGAGGACGAC 60.389 55.000 0.00 0.00 0.00 4.34
2298 2740 2.354510 ACGACCATAATGCAAATGTCCG 59.645 45.455 15.50 15.50 0.00 4.79
2313 2755 0.539986 GTCCGGATAAGCCAGGTTGA 59.460 55.000 7.81 0.00 35.94 3.18
2403 2845 3.125829 ACACTGCGTAAATTGCATGAGAG 59.874 43.478 0.00 0.00 42.32 3.20
2415 2857 3.349927 TGCATGAGAGGACAGAAAATGG 58.650 45.455 0.00 0.00 0.00 3.16
2516 2964 7.346751 AGGTTTGCTTTTTGAACTTCAGATA 57.653 32.000 0.00 0.00 0.00 1.98
2517 2965 7.955918 AGGTTTGCTTTTTGAACTTCAGATAT 58.044 30.769 0.00 0.00 0.00 1.63
2518 2966 8.084684 AGGTTTGCTTTTTGAACTTCAGATATC 58.915 33.333 0.00 0.00 0.00 1.63
2519 2967 8.084684 GGTTTGCTTTTTGAACTTCAGATATCT 58.915 33.333 0.00 0.00 0.00 1.98
2520 2968 8.909671 GTTTGCTTTTTGAACTTCAGATATCTG 58.090 33.333 24.32 24.32 45.08 2.90
2521 2969 7.750229 TGCTTTTTGAACTTCAGATATCTGT 57.250 32.000 27.80 12.26 44.12 3.41
2522 2970 8.846943 TGCTTTTTGAACTTCAGATATCTGTA 57.153 30.769 27.80 19.68 44.12 2.74
2523 2971 9.453572 TGCTTTTTGAACTTCAGATATCTGTAT 57.546 29.630 27.80 14.41 44.12 2.29
2553 3002 3.044059 GCTCGTGTTGAGGCCATGC 62.044 63.158 5.01 0.00 45.38 4.06
2599 3049 2.536066 TGGCTAGTCCAAGCTAAGTCA 58.464 47.619 3.71 0.00 43.21 3.41
2600 3050 2.903784 TGGCTAGTCCAAGCTAAGTCAA 59.096 45.455 3.71 0.00 43.21 3.18
2601 3051 3.263261 GGCTAGTCCAAGCTAAGTCAAC 58.737 50.000 0.00 0.00 42.37 3.18
2602 3052 2.924290 GCTAGTCCAAGCTAAGTCAACG 59.076 50.000 0.00 0.00 39.50 4.10
2603 3053 2.457366 AGTCCAAGCTAAGTCAACGG 57.543 50.000 0.00 0.00 0.00 4.44
2604 3054 1.692519 AGTCCAAGCTAAGTCAACGGT 59.307 47.619 0.00 0.00 0.00 4.83
2605 3055 1.798813 GTCCAAGCTAAGTCAACGGTG 59.201 52.381 0.00 0.00 0.00 4.94
2647 3098 6.017605 GTGAGGCACTTATCCTTGTATGATTG 60.018 42.308 0.00 0.00 41.55 2.67
2705 3158 3.347216 ACAAGTGGGTCTGCAATATGAC 58.653 45.455 0.00 0.00 0.00 3.06
2708 3161 1.134521 GTGGGTCTGCAATATGACGGA 60.135 52.381 0.00 0.00 34.31 4.69
2777 3230 6.790232 TTCTGGACCAAGTTGATTCTTTTT 57.210 33.333 3.87 0.00 0.00 1.94
2779 3232 7.510549 TCTGGACCAAGTTGATTCTTTTTAG 57.489 36.000 3.87 0.00 0.00 1.85
2825 3298 7.117956 GGACCTCTAGTTTTGTTGTATCACTTC 59.882 40.741 0.00 0.00 0.00 3.01
2827 3300 7.873505 ACCTCTAGTTTTGTTGTATCACTTCTC 59.126 37.037 0.00 0.00 0.00 2.87
2830 3303 9.261180 TCTAGTTTTGTTGTATCACTTCTCTTG 57.739 33.333 0.00 0.00 0.00 3.02
2861 3334 4.691175 TGTTGTTGCATGCTACAAATTGT 58.309 34.783 37.19 3.43 41.56 2.71
2875 3348 8.904834 TGCTACAAATTGTTCCTACAAAAGTAA 58.095 29.630 3.17 0.00 46.62 2.24
2876 3349 9.394477 GCTACAAATTGTTCCTACAAAAGTAAG 57.606 33.333 3.17 0.00 46.62 2.34
2903 3376 3.088532 TCTTGTTATCATGTTGCCCACC 58.911 45.455 0.00 0.00 0.00 4.61
3053 3528 7.465513 CGGTGTAATTTTCTGCTACATACCTTC 60.466 40.741 0.00 0.00 0.00 3.46
3068 3543 5.071788 ACATACCTTCAAACTCTGAACCTGA 59.928 40.000 0.00 0.00 39.20 3.86
3072 3547 4.513318 CCTTCAAACTCTGAACCTGAAGAC 59.487 45.833 17.32 0.00 43.65 3.01
3079 3554 4.835615 ACTCTGAACCTGAAGACATGTACT 59.164 41.667 0.00 0.00 0.00 2.73
3091 3566 6.483307 TGAAGACATGTACTTTTGAACTCTGG 59.517 38.462 0.00 0.00 0.00 3.86
3101 3576 2.009681 TGAACTCTGGACCTGTAGCA 57.990 50.000 0.00 0.00 0.00 3.49
3111 3586 3.201290 GGACCTGTAGCAATGTGAGATG 58.799 50.000 0.00 0.00 0.00 2.90
3126 3601 6.801539 TGTGAGATGGATAACACTTGTTTC 57.198 37.500 0.00 0.00 39.31 2.78
3205 3681 2.910319 AGGTACACAGGGTATGCTTGAA 59.090 45.455 0.00 0.00 33.76 2.69
3216 3692 3.567164 GGTATGCTTGAACTGATCCATGG 59.433 47.826 4.97 4.97 0.00 3.66
3256 3735 1.319541 TAGCGGCTAGTCCAAGCTAG 58.680 55.000 5.42 0.00 42.37 3.42
3298 3780 2.225467 GTGGCATTCTCCTTCTATGGC 58.775 52.381 0.00 0.00 43.02 4.40
3350 3832 7.657336 ACATAAAATTGAAATGTGTCCGTCTT 58.343 30.769 1.05 0.00 32.74 3.01
3382 3864 9.926158 TGAATGCATTTAATTTGTACTGATGTT 57.074 25.926 14.33 0.00 0.00 2.71
3384 3866 9.709495 AATGCATTTAATTTGTACTGATGTTGT 57.291 25.926 5.99 0.00 0.00 3.32
3422 3908 5.699839 ACTGTAATTCTGAACCAAATTCGC 58.300 37.500 0.00 0.00 40.56 4.70
3427 3913 8.181573 TGTAATTCTGAACCAAATTCGCTATTC 58.818 33.333 0.00 0.00 40.56 1.75
3436 3922 7.020914 ACCAAATTCGCTATTCAGATTTCTC 57.979 36.000 0.00 0.00 0.00 2.87
3470 3956 9.445786 AAGAAACTATATTGACAAACGTTGTTG 57.554 29.630 0.00 0.00 45.52 3.33
3471 3957 8.073768 AGAAACTATATTGACAAACGTTGTTGG 58.926 33.333 0.00 0.00 45.52 3.77
3472 3958 6.249035 ACTATATTGACAAACGTTGTTGGG 57.751 37.500 0.00 0.00 45.52 4.12
3489 4462 5.194432 TGTTGGGCACTTTTCTTGTTAGTA 58.806 37.500 0.00 0.00 0.00 1.82
3507 4480 8.593492 TGTTAGTACATCTGATATGTTGATGC 57.407 34.615 0.00 0.00 40.66 3.91
3508 4481 8.424133 TGTTAGTACATCTGATATGTTGATGCT 58.576 33.333 0.00 0.00 40.66 3.79
3509 4482 9.265901 GTTAGTACATCTGATATGTTGATGCTT 57.734 33.333 0.00 0.00 40.66 3.91
3512 4485 9.836864 AGTACATCTGATATGTTGATGCTTAAA 57.163 29.630 0.00 0.00 40.66 1.52
3542 4515 7.665559 TCTGATAAGTTGATGCTTAAAAGTGGT 59.334 33.333 0.00 0.00 34.98 4.16
3546 4519 9.908152 ATAAGTTGATGCTTAAAAGTGGTAAAC 57.092 29.630 0.00 0.00 34.98 2.01
3608 4581 2.449464 CAGGGATGCCATGTGAAGAAA 58.551 47.619 5.86 0.00 29.93 2.52
3630 4603 4.591321 AAGGATATGTGGGAGCTTTTGA 57.409 40.909 0.00 0.00 0.00 2.69
3647 4621 2.254546 TGAATGGCGAGTGACAAAGT 57.745 45.000 0.00 0.00 36.07 2.66
3673 4647 3.819902 CAGCAAGGAAGAGAAAAGAGCTT 59.180 43.478 0.00 0.00 0.00 3.74
3743 4720 9.656323 TGTAGAGTAATGGATTAGTTAGGATGT 57.344 33.333 0.00 0.00 0.00 3.06
3759 4736 9.998106 AGTTAGGATGTTATGTATCATGTAACC 57.002 33.333 0.00 0.00 0.00 2.85
3773 4750 0.538118 GTAACCGGAGCATGTACCCA 59.462 55.000 9.46 0.00 0.00 4.51
3795 4774 5.410746 CCATATCCTGTATCATGACAACTGC 59.589 44.000 0.00 0.00 0.00 4.40
3804 4783 1.267806 CATGACAACTGCTTGTGACCC 59.732 52.381 0.00 0.00 40.93 4.46
3813 4792 0.179018 GCTTGTGACCCAGGTCTGTT 60.179 55.000 17.44 0.00 44.80 3.16
3835 4816 3.644884 TGTGAAGAAGACTCTCCGTTC 57.355 47.619 0.00 0.00 0.00 3.95
3836 4817 2.956333 TGTGAAGAAGACTCTCCGTTCA 59.044 45.455 0.00 0.00 0.00 3.18
3936 4917 4.019858 TGGAATTGGTCTTGTTGTTCACA 58.980 39.130 0.00 0.00 0.00 3.58
3956 4937 6.808829 TCACAATTGCTGAAAATCTGTTTCT 58.191 32.000 5.05 0.00 0.00 2.52
3970 4951 7.527084 AATCTGTTTCTGTTAGCGATACTTC 57.473 36.000 0.00 0.00 0.00 3.01
3971 4952 6.268825 TCTGTTTCTGTTAGCGATACTTCT 57.731 37.500 0.00 0.00 0.00 2.85
3972 4953 6.688578 TCTGTTTCTGTTAGCGATACTTCTT 58.311 36.000 0.00 0.00 0.00 2.52
3975 4956 8.997621 TGTTTCTGTTAGCGATACTTCTTTAT 57.002 30.769 0.00 0.00 0.00 1.40
4017 4998 2.742053 TGAAATGTCGCTTTGAGGCTAC 59.258 45.455 0.00 0.00 0.00 3.58
4019 5000 2.698855 ATGTCGCTTTGAGGCTACAT 57.301 45.000 0.39 0.39 41.56 2.29
4066 5115 3.009473 TCTTCAAGGGAGGTTGATTCAGG 59.991 47.826 0.00 0.00 36.34 3.86
4070 5119 1.912043 AGGGAGGTTGATTCAGGAGTG 59.088 52.381 0.00 0.00 0.00 3.51
4071 5120 1.630878 GGGAGGTTGATTCAGGAGTGT 59.369 52.381 0.00 0.00 0.00 3.55
4072 5121 2.040412 GGGAGGTTGATTCAGGAGTGTT 59.960 50.000 0.00 0.00 0.00 3.32
4074 5123 3.503748 GGAGGTTGATTCAGGAGTGTTTG 59.496 47.826 0.00 0.00 0.00 2.93
4075 5124 4.137543 GAGGTTGATTCAGGAGTGTTTGT 58.862 43.478 0.00 0.00 0.00 2.83
4076 5125 3.885297 AGGTTGATTCAGGAGTGTTTGTG 59.115 43.478 0.00 0.00 0.00 3.33
4077 5126 3.882888 GGTTGATTCAGGAGTGTTTGTGA 59.117 43.478 0.00 0.00 0.00 3.58
4078 5127 4.520492 GGTTGATTCAGGAGTGTTTGTGAT 59.480 41.667 0.00 0.00 0.00 3.06
4079 5128 5.010012 GGTTGATTCAGGAGTGTTTGTGATT 59.990 40.000 0.00 0.00 0.00 2.57
4080 5129 5.947228 TGATTCAGGAGTGTTTGTGATTC 57.053 39.130 0.00 0.00 0.00 2.52
4083 5132 3.743521 TCAGGAGTGTTTGTGATTCAGG 58.256 45.455 0.00 0.00 0.00 3.86
4086 5135 3.648067 AGGAGTGTTTGTGATTCAGGAGA 59.352 43.478 0.00 0.00 0.00 3.71
4088 5137 5.006386 GGAGTGTTTGTGATTCAGGAGAAT 58.994 41.667 0.00 0.00 46.85 2.40
4089 5138 5.106396 GGAGTGTTTGTGATTCAGGAGAATG 60.106 44.000 0.00 0.00 44.30 2.67
4090 5139 5.380043 AGTGTTTGTGATTCAGGAGAATGT 58.620 37.500 0.00 0.00 44.30 2.71
4091 5140 6.533730 AGTGTTTGTGATTCAGGAGAATGTA 58.466 36.000 0.00 0.00 44.30 2.29
4093 5142 6.428159 GTGTTTGTGATTCAGGAGAATGTAGT 59.572 38.462 0.00 0.00 44.30 2.73
4105 5160 7.070322 TCAGGAGAATGTAGTGATGAATGATGA 59.930 37.037 0.00 0.00 0.00 2.92
4116 5171 5.123502 GTGATGAATGATGAACAAGCAGAGT 59.876 40.000 0.00 0.00 0.00 3.24
4123 5178 5.610398 TGATGAACAAGCAGAGTTGTAAGA 58.390 37.500 0.00 0.00 39.82 2.10
4124 5179 5.698089 TGATGAACAAGCAGAGTTGTAAGAG 59.302 40.000 0.00 0.00 39.82 2.85
4125 5180 5.276461 TGAACAAGCAGAGTTGTAAGAGA 57.724 39.130 0.00 0.00 39.82 3.10
4135 5645 6.516718 CAGAGTTGTAAGAGAAACCTCAAGA 58.483 40.000 0.00 0.00 33.16 3.02
4136 5646 7.158021 CAGAGTTGTAAGAGAAACCTCAAGAT 58.842 38.462 0.00 0.00 33.16 2.40
4143 5653 4.070716 AGAGAAACCTCAAGATGCAAGTG 58.929 43.478 0.00 0.00 33.16 3.16
4153 5663 5.610398 TCAAGATGCAAGTGAACTCAGTAA 58.390 37.500 0.00 0.00 0.00 2.24
4154 5664 5.698089 TCAAGATGCAAGTGAACTCAGTAAG 59.302 40.000 0.00 0.00 0.00 2.34
4177 5690 6.951971 AGAGTATTTTGTCAATCCAGTAGCT 58.048 36.000 0.00 0.00 0.00 3.32
4194 5707 6.238621 CCAGTAGCTAGTCAGACTGAAGTATG 60.239 46.154 13.84 5.63 41.51 2.39
4196 5709 7.066404 CAGTAGCTAGTCAGACTGAAGTATGAA 59.934 40.741 13.84 0.00 46.21 2.57
4198 5711 9.058174 GTAGCTAGTCAGACTGAAGTATGAATA 57.942 37.037 13.84 11.29 46.21 1.75
4256 6153 6.777213 AGTTCAGATAAGGAGTGTCGTTAT 57.223 37.500 2.35 2.35 39.34 1.89
4272 6169 6.954297 GTGTCGTTATTTAAGTTTCTAGCTGC 59.046 38.462 0.00 0.00 0.00 5.25
4289 6186 4.960938 AGCTGCGGTAAATATTCTCATCA 58.039 39.130 0.00 0.00 0.00 3.07
4291 6188 4.511454 GCTGCGGTAAATATTCTCATCACA 59.489 41.667 0.00 0.00 0.00 3.58
4297 6194 6.201044 CGGTAAATATTCTCATCACAGTCACC 59.799 42.308 0.00 0.00 0.00 4.02
4351 6248 9.769677 ATATACTCCTATATAGCTTGTCACCAA 57.230 33.333 4.04 0.00 0.00 3.67
4352 6249 6.163135 ACTCCTATATAGCTTGTCACCAAC 57.837 41.667 4.04 0.00 0.00 3.77
4353 6250 5.900123 ACTCCTATATAGCTTGTCACCAACT 59.100 40.000 4.04 0.00 0.00 3.16
4354 6251 7.067421 ACTCCTATATAGCTTGTCACCAACTA 58.933 38.462 4.04 0.00 0.00 2.24
4355 6252 7.231722 ACTCCTATATAGCTTGTCACCAACTAG 59.768 40.741 4.04 0.00 34.31 2.57
4356 6253 7.295340 TCCTATATAGCTTGTCACCAACTAGA 58.705 38.462 4.04 0.00 33.13 2.43
4357 6254 7.230913 TCCTATATAGCTTGTCACCAACTAGAC 59.769 40.741 4.04 0.00 33.13 2.59
4373 6270 6.862090 CCAACTAGACTAGTACACTTCACAAC 59.138 42.308 15.51 0.00 38.26 3.32
4384 6281 2.675844 CACTTCACAACGTCCAAACTCA 59.324 45.455 0.00 0.00 0.00 3.41
4446 6343 4.034510 GCTCATACCTTCGAACAATTCAGG 59.965 45.833 0.00 0.00 0.00 3.86
4451 6348 3.573967 ACCTTCGAACAATTCAGGCATTT 59.426 39.130 0.00 0.00 0.00 2.32
4458 6355 5.865552 CGAACAATTCAGGCATTTTGATTCT 59.134 36.000 0.00 0.00 0.00 2.40
4510 6407 6.856426 CGGAAAAGATACAGAAAACTTTGGAC 59.144 38.462 0.00 0.00 33.72 4.02
4520 6417 3.923017 AAACTTTGGACAGCATACAGC 57.077 42.857 0.00 0.00 46.19 4.40
4533 6430 3.604582 GCATACAGCTTGAAAGAGGTCT 58.395 45.455 0.00 0.00 41.15 3.85
4534 6431 3.373439 GCATACAGCTTGAAAGAGGTCTG 59.627 47.826 0.00 0.00 41.15 3.51
4535 6432 1.889545 ACAGCTTGAAAGAGGTCTGC 58.110 50.000 0.00 0.00 0.00 4.26
4536 6433 1.419387 ACAGCTTGAAAGAGGTCTGCT 59.581 47.619 0.00 0.00 0.00 4.24
4537 6434 2.158696 ACAGCTTGAAAGAGGTCTGCTT 60.159 45.455 0.00 0.00 0.00 3.91
4538 6435 2.883386 CAGCTTGAAAGAGGTCTGCTTT 59.117 45.455 0.00 0.00 38.22 3.51
4539 6436 2.883386 AGCTTGAAAGAGGTCTGCTTTG 59.117 45.455 0.00 0.00 35.83 2.77
4540 6437 2.030451 GCTTGAAAGAGGTCTGCTTTGG 60.030 50.000 0.00 0.00 35.83 3.28
4541 6438 3.217626 CTTGAAAGAGGTCTGCTTTGGT 58.782 45.455 0.00 0.00 35.83 3.67
4542 6439 4.389374 CTTGAAAGAGGTCTGCTTTGGTA 58.611 43.478 0.00 0.00 35.83 3.25
4543 6440 3.740115 TGAAAGAGGTCTGCTTTGGTAC 58.260 45.455 0.00 0.00 35.83 3.34
4544 6441 3.135712 TGAAAGAGGTCTGCTTTGGTACA 59.864 43.478 0.00 0.00 35.83 2.90
4545 6442 2.841442 AGAGGTCTGCTTTGGTACAC 57.159 50.000 0.00 0.00 39.29 2.90
4546 6443 1.348036 AGAGGTCTGCTTTGGTACACC 59.652 52.381 0.00 0.00 39.29 4.16
4547 6444 0.400594 AGGTCTGCTTTGGTACACCC 59.599 55.000 0.00 0.00 39.29 4.61
4548 6445 0.608308 GGTCTGCTTTGGTACACCCC 60.608 60.000 0.00 0.00 39.29 4.95
4549 6446 0.608308 GTCTGCTTTGGTACACCCCC 60.608 60.000 0.00 0.00 39.29 5.40
4563 6460 4.851179 CCCCCGCCCTCGCTTAAC 62.851 72.222 0.00 0.00 0.00 2.01
4565 6462 4.446413 CCCGCCCTCGCTTAACGT 62.446 66.667 0.00 0.00 44.19 3.99
4566 6463 2.491152 CCGCCCTCGCTTAACGTA 59.509 61.111 0.00 0.00 44.19 3.57
4567 6464 1.066918 CCGCCCTCGCTTAACGTAT 59.933 57.895 0.00 0.00 44.19 3.06
4568 6465 0.311790 CCGCCCTCGCTTAACGTATA 59.688 55.000 0.00 0.00 44.19 1.47
4569 6466 1.269206 CCGCCCTCGCTTAACGTATAA 60.269 52.381 0.00 0.00 44.19 0.98
4570 6467 2.049228 CGCCCTCGCTTAACGTATAAG 58.951 52.381 11.04 11.04 44.19 1.73
4571 6468 2.401351 GCCCTCGCTTAACGTATAAGG 58.599 52.381 14.90 6.17 44.19 2.69
4572 6469 3.022607 CCCTCGCTTAACGTATAAGGG 57.977 52.381 19.19 19.19 43.45 3.95
4573 6470 2.401351 CCTCGCTTAACGTATAAGGGC 58.599 52.381 19.87 9.11 44.19 5.19
4574 6471 2.223876 CCTCGCTTAACGTATAAGGGCA 60.224 50.000 19.87 12.79 44.19 5.36
4575 6472 3.554337 CCTCGCTTAACGTATAAGGGCAT 60.554 47.826 19.87 0.00 44.19 4.40
4576 6473 4.056050 CTCGCTTAACGTATAAGGGCATT 58.944 43.478 19.87 0.00 44.19 3.56
4577 6474 4.444536 TCGCTTAACGTATAAGGGCATTT 58.555 39.130 19.87 0.00 44.19 2.32
4578 6475 4.877251 TCGCTTAACGTATAAGGGCATTTT 59.123 37.500 19.87 0.00 44.19 1.82
4579 6476 4.967575 CGCTTAACGTATAAGGGCATTTTG 59.032 41.667 15.84 0.00 36.87 2.44
4580 6477 5.278604 GCTTAACGTATAAGGGCATTTTGG 58.721 41.667 14.90 0.00 0.00 3.28
4581 6478 5.735070 GCTTAACGTATAAGGGCATTTTGGG 60.735 44.000 14.90 0.00 0.00 4.12
4582 6479 2.028876 ACGTATAAGGGCATTTTGGGC 58.971 47.619 0.00 0.00 0.00 5.36
4583 6480 2.028130 CGTATAAGGGCATTTTGGGCA 58.972 47.619 0.00 0.00 34.52 5.36
4584 6481 2.627699 CGTATAAGGGCATTTTGGGCAT 59.372 45.455 0.00 0.00 34.52 4.40
4585 6482 3.823873 CGTATAAGGGCATTTTGGGCATA 59.176 43.478 0.00 0.00 34.52 3.14
4586 6483 4.320935 CGTATAAGGGCATTTTGGGCATAC 60.321 45.833 0.00 0.00 34.52 2.39
4587 6484 0.823460 AAGGGCATTTTGGGCATACG 59.177 50.000 0.00 0.00 34.52 3.06
4588 6485 1.042559 AGGGCATTTTGGGCATACGG 61.043 55.000 0.00 0.00 34.52 4.02
4589 6486 1.326951 GGGCATTTTGGGCATACGGT 61.327 55.000 0.00 0.00 34.52 4.83
4590 6487 0.179113 GGCATTTTGGGCATACGGTG 60.179 55.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
441 809 9.228949 CTCTAGGAAATAGAACTAGCCGTTATA 57.771 37.037 0.00 0.00 40.06 0.98
539 908 1.202891 GCCAAGTGGAAACCTACAGGT 60.203 52.381 0.18 0.00 44.47 4.00
597 968 1.104630 GGGACGTGGGTTCACAAAAA 58.895 50.000 0.00 0.00 43.79 1.94
634 1005 0.111639 TTGGTCCAAACAGTAGGGGC 59.888 55.000 0.40 0.00 0.00 5.80
635 1006 2.668144 TTTGGTCCAAACAGTAGGGG 57.332 50.000 13.26 0.00 0.00 4.79
644 1015 0.260230 TCCAGCCTGTTTGGTCCAAA 59.740 50.000 13.26 13.26 37.02 3.28
645 1016 0.467290 GTCCAGCCTGTTTGGTCCAA 60.467 55.000 0.00 0.00 37.02 3.53
646 1017 1.150536 GTCCAGCCTGTTTGGTCCA 59.849 57.895 0.00 0.00 37.02 4.02
647 1018 1.603739 GGTCCAGCCTGTTTGGTCC 60.604 63.158 0.00 0.00 36.88 4.46
648 1019 4.081050 GGTCCAGCCTGTTTGGTC 57.919 61.111 0.00 0.00 37.02 4.02
657 1028 2.157738 GCATATCATTCAGGTCCAGCC 58.842 52.381 0.00 0.00 37.58 4.85
658 1029 3.072944 GAGCATATCATTCAGGTCCAGC 58.927 50.000 0.00 0.00 0.00 4.85
659 1030 4.202336 ACTGAGCATATCATTCAGGTCCAG 60.202 45.833 10.67 0.00 41.98 3.86
660 1031 3.713248 ACTGAGCATATCATTCAGGTCCA 59.287 43.478 10.67 0.00 41.98 4.02
661 1032 4.202295 TGACTGAGCATATCATTCAGGTCC 60.202 45.833 10.67 0.00 41.28 4.46
662 1033 4.749099 GTGACTGAGCATATCATTCAGGTC 59.251 45.833 10.67 0.00 45.25 3.85
663 1034 4.162888 TGTGACTGAGCATATCATTCAGGT 59.837 41.667 10.67 0.00 45.25 4.00
664 1035 4.510711 GTGTGACTGAGCATATCATTCAGG 59.489 45.833 10.67 0.00 45.25 3.86
665 1036 4.510711 GGTGTGACTGAGCATATCATTCAG 59.489 45.833 0.00 6.24 45.25 3.02
666 1037 4.445453 GGTGTGACTGAGCATATCATTCA 58.555 43.478 0.00 0.00 43.22 2.57
667 1038 3.492383 CGGTGTGACTGAGCATATCATTC 59.508 47.826 0.00 0.00 37.28 2.67
668 1039 3.132824 TCGGTGTGACTGAGCATATCATT 59.867 43.478 0.00 0.00 37.28 2.57
669 1040 2.695147 TCGGTGTGACTGAGCATATCAT 59.305 45.455 0.00 0.00 37.28 2.45
670 1041 2.099405 TCGGTGTGACTGAGCATATCA 58.901 47.619 0.00 0.00 36.21 2.15
671 1042 2.464865 GTCGGTGTGACTGAGCATATC 58.535 52.381 0.00 0.00 44.58 1.63
672 1043 2.586258 GTCGGTGTGACTGAGCATAT 57.414 50.000 0.00 0.00 44.58 1.78
674 1045 4.996976 GTCGGTGTGACTGAGCAT 57.003 55.556 0.00 0.00 44.58 3.79
682 1053 2.200370 AGGGGAGTGTCGGTGTGA 59.800 61.111 0.00 0.00 0.00 3.58
683 1054 2.343758 CAGGGGAGTGTCGGTGTG 59.656 66.667 0.00 0.00 0.00 3.82
684 1055 3.626924 GCAGGGGAGTGTCGGTGT 61.627 66.667 0.00 0.00 0.00 4.16
685 1056 4.394712 GGCAGGGGAGTGTCGGTG 62.395 72.222 0.00 0.00 0.00 4.94
693 1064 4.748798 AGTGAGGGGGCAGGGGAG 62.749 72.222 0.00 0.00 0.00 4.30
694 1065 4.285790 AAGTGAGGGGGCAGGGGA 62.286 66.667 0.00 0.00 0.00 4.81
695 1066 3.732849 GAAGTGAGGGGGCAGGGG 61.733 72.222 0.00 0.00 0.00 4.79
696 1067 2.935481 TGAAGTGAGGGGGCAGGG 60.935 66.667 0.00 0.00 0.00 4.45
697 1068 2.190488 GAGTGAAGTGAGGGGGCAGG 62.190 65.000 0.00 0.00 0.00 4.85
698 1069 1.298014 GAGTGAAGTGAGGGGGCAG 59.702 63.158 0.00 0.00 0.00 4.85
699 1070 2.583441 CGAGTGAAGTGAGGGGGCA 61.583 63.158 0.00 0.00 0.00 5.36
700 1071 2.266055 CGAGTGAAGTGAGGGGGC 59.734 66.667 0.00 0.00 0.00 5.80
701 1072 2.232298 GAGCGAGTGAAGTGAGGGGG 62.232 65.000 0.00 0.00 0.00 5.40
702 1073 1.216710 GAGCGAGTGAAGTGAGGGG 59.783 63.158 0.00 0.00 0.00 4.79
703 1074 1.216710 GGAGCGAGTGAAGTGAGGG 59.783 63.158 0.00 0.00 0.00 4.30
704 1075 0.108898 CTGGAGCGAGTGAAGTGAGG 60.109 60.000 0.00 0.00 0.00 3.86
711 1082 0.962855 CTGGAGACTGGAGCGAGTGA 60.963 60.000 0.00 0.00 0.00 3.41
715 1086 3.071206 GGCTGGAGACTGGAGCGA 61.071 66.667 0.00 0.00 33.26 4.93
746 1117 1.371183 CTGTCACTTCTTCCGGCCA 59.629 57.895 2.24 0.00 0.00 5.36
759 1130 1.377202 GAAATCCTGGCGCCTGTCA 60.377 57.895 29.70 16.02 0.00 3.58
770 1141 0.179073 CAGATCGCCGGTGAAATCCT 60.179 55.000 23.72 13.56 0.00 3.24
837 1210 2.614134 AGATCGGGGAAGGAGATAGG 57.386 55.000 0.00 0.00 0.00 2.57
840 1213 4.349365 GAGAATAGATCGGGGAAGGAGAT 58.651 47.826 0.00 0.00 0.00 2.75
862 1240 7.284261 ACAAGAGAAGAAAAGAGAGGAAAAAGG 59.716 37.037 0.00 0.00 0.00 3.11
914 1292 2.359214 GGGAATTTGTAGGCAGCTAAGC 59.641 50.000 0.00 0.00 0.00 3.09
916 1294 2.357777 GGGGGAATTTGTAGGCAGCTAA 60.358 50.000 0.00 0.00 0.00 3.09
917 1295 1.214424 GGGGGAATTTGTAGGCAGCTA 59.786 52.381 0.00 0.00 0.00 3.32
918 1296 0.033109 GGGGGAATTTGTAGGCAGCT 60.033 55.000 0.00 0.00 0.00 4.24
919 1297 2.504920 GGGGGAATTTGTAGGCAGC 58.495 57.895 0.00 0.00 0.00 5.25
954 1332 6.588756 CACTGCCGTAGAAAGTAATTGTAGAA 59.411 38.462 0.00 0.00 0.00 2.10
968 1346 0.391228 TTGCTGAACACTGCCGTAGA 59.609 50.000 0.00 0.00 0.00 2.59
970 1348 0.602638 CCTTGCTGAACACTGCCGTA 60.603 55.000 0.00 0.00 0.00 4.02
986 1367 4.286549 CAGCATCCATCTTCTATCCTCCTT 59.713 45.833 0.00 0.00 0.00 3.36
987 1368 3.839490 CAGCATCCATCTTCTATCCTCCT 59.161 47.826 0.00 0.00 0.00 3.69
1032 1434 1.917872 TTGGAACTTACCATGGCCAC 58.082 50.000 8.16 0.00 39.82 5.01
1033 1435 2.917713 ATTGGAACTTACCATGGCCA 57.082 45.000 13.04 8.56 39.82 5.36
1037 1439 6.039717 CACCTTGGATATTGGAACTTACCATG 59.960 42.308 0.00 0.00 39.82 3.66
1056 1458 1.679139 TGGAAACAGAGTGCACCTTG 58.321 50.000 14.63 14.64 35.01 3.61
1076 1478 1.205893 GGAAACAAAGTGCACCAACCA 59.794 47.619 14.63 0.00 0.00 3.67
1095 1497 4.112774 ACACAAAGTGCACCAACCATGG 62.113 50.000 14.63 11.19 44.26 3.66
1096 1498 1.136695 ACACAAAGTGCACCAACCATG 59.863 47.619 14.63 7.51 36.98 3.66
1097 1499 1.408702 GACACAAAGTGCACCAACCAT 59.591 47.619 14.63 0.00 36.98 3.55
1100 1502 1.472480 ACAGACACAAAGTGCACCAAC 59.528 47.619 14.63 0.00 36.98 3.77
1101 1503 1.472082 CACAGACACAAAGTGCACCAA 59.528 47.619 14.63 0.00 36.98 3.67
1105 1507 1.948834 CCATCACAGACACAAAGTGCA 59.051 47.619 0.00 0.00 36.98 4.57
1106 1508 2.221169 TCCATCACAGACACAAAGTGC 58.779 47.619 0.00 0.00 36.98 4.40
1108 1510 3.072915 TCCATCCATCACAGACACAAAGT 59.927 43.478 0.00 0.00 0.00 2.66
1109 1511 3.438087 GTCCATCCATCACAGACACAAAG 59.562 47.826 0.00 0.00 0.00 2.77
1110 1512 3.411446 GTCCATCCATCACAGACACAAA 58.589 45.455 0.00 0.00 0.00 2.83
1112 1514 1.066929 CGTCCATCCATCACAGACACA 60.067 52.381 0.00 0.00 0.00 3.72
1113 1515 1.204704 TCGTCCATCCATCACAGACAC 59.795 52.381 0.00 0.00 0.00 3.67
1115 1517 2.672961 TTCGTCCATCCATCACAGAC 57.327 50.000 0.00 0.00 0.00 3.51
1116 1518 2.742856 GCATTCGTCCATCCATCACAGA 60.743 50.000 0.00 0.00 0.00 3.41
1117 1519 1.600957 GCATTCGTCCATCCATCACAG 59.399 52.381 0.00 0.00 0.00 3.66
1121 1532 0.590195 GCAGCATTCGTCCATCCATC 59.410 55.000 0.00 0.00 0.00 3.51
1140 1551 2.394708 CAGCCGATAATGGACGTACAG 58.605 52.381 6.62 0.00 0.00 2.74
1145 1556 1.835483 GCTGCAGCCGATAATGGACG 61.835 60.000 28.76 0.00 34.31 4.79
1151 1562 0.521291 GTTGTTGCTGCAGCCGATAA 59.479 50.000 34.64 23.31 41.18 1.75
1158 1580 3.825308 ACGAATAATGTTGTTGCTGCAG 58.175 40.909 10.11 10.11 0.00 4.41
1161 1583 6.086765 GTCTTGAACGAATAATGTTGTTGCTG 59.913 38.462 0.00 0.00 0.00 4.41
1162 1584 6.142817 GTCTTGAACGAATAATGTTGTTGCT 58.857 36.000 0.00 0.00 0.00 3.91
1163 1585 5.912396 TGTCTTGAACGAATAATGTTGTTGC 59.088 36.000 0.00 0.00 0.00 4.17
1166 1588 7.083858 CCAATGTCTTGAACGAATAATGTTGT 58.916 34.615 0.00 0.00 34.04 3.32
1169 1591 6.817765 ACCAATGTCTTGAACGAATAATGT 57.182 33.333 0.00 0.00 34.04 2.71
1177 1599 4.496341 GGCATCATACCAATGTCTTGAACG 60.496 45.833 0.00 0.00 34.04 3.95
1186 1608 3.087031 GGAGATGGGCATCATACCAATG 58.913 50.000 0.00 0.00 40.73 2.82
1187 1609 2.718062 TGGAGATGGGCATCATACCAAT 59.282 45.455 0.00 0.00 40.73 3.16
1192 1614 4.458256 ACAAATGGAGATGGGCATCATA 57.542 40.909 0.00 0.00 40.22 2.15
1206 1632 2.288458 CAGCAGCCACAAAAACAAATGG 59.712 45.455 0.00 0.00 35.17 3.16
1248 1680 4.379186 GCTCTGTCTCACCATCAACAAATG 60.379 45.833 0.00 0.00 0.00 2.32
1251 1683 2.104622 TGCTCTGTCTCACCATCAACAA 59.895 45.455 0.00 0.00 0.00 2.83
1255 1687 0.248565 GCTGCTCTGTCTCACCATCA 59.751 55.000 0.00 0.00 0.00 3.07
1261 1693 2.661399 GCTGGCTGCTCTGTCTCA 59.339 61.111 9.31 0.00 38.95 3.27
1289 1721 2.435059 GTCGCAGAGGACCTTGGC 60.435 66.667 0.00 1.47 36.95 4.52
1301 1733 0.242825 CTAAGGAGGTTGTCGTCGCA 59.757 55.000 0.00 0.00 0.00 5.10
1348 1780 2.203294 GCACGGACAAGGGTGGTT 60.203 61.111 0.00 0.00 34.76 3.67
1408 1840 0.608640 GGAAACGAGAGAGGAAGGCA 59.391 55.000 0.00 0.00 0.00 4.75
1446 1878 3.396611 AGAGAAGTAGTAGCCTAGGAGGG 59.603 52.174 14.75 0.00 35.37 4.30
1463 1895 1.613925 CGAGACCAACCACTCAGAGAA 59.386 52.381 3.79 0.00 33.86 2.87
1476 1908 2.943690 CCTAGATTCTTCGACGAGACCA 59.056 50.000 0.00 0.00 0.00 4.02
1481 1913 2.355132 GAGCACCTAGATTCTTCGACGA 59.645 50.000 0.00 0.00 0.00 4.20
1537 1970 1.670967 GCATGGCCAAAAGACTCTTGC 60.671 52.381 10.96 8.18 0.00 4.01
1554 1993 2.013964 TGGATGGTGATGGGGGCAT 61.014 57.895 0.00 0.00 0.00 4.40
1569 2008 0.606604 GCGTGGACTAGAAAGGTGGA 59.393 55.000 0.00 0.00 0.00 4.02
1580 2019 1.827399 ATCGGGACAAAGCGTGGACT 61.827 55.000 0.00 0.00 0.00 3.85
1581 2020 1.375523 ATCGGGACAAAGCGTGGAC 60.376 57.895 0.00 0.00 0.00 4.02
1627 2066 0.320683 CAGCAAGGTGACGGATGACA 60.321 55.000 0.00 0.00 0.00 3.58
1671 2110 3.616076 GCAGTGCTTGATCAGTAGAGTGT 60.616 47.826 8.18 0.00 0.00 3.55
1676 2115 2.391616 TGGCAGTGCTTGATCAGTAG 57.608 50.000 16.11 0.00 0.00 2.57
1696 2135 0.035820 GGGTGAAGATGGTGCCGTTA 60.036 55.000 0.00 0.00 0.00 3.18
1720 2159 5.885352 TGTCAATTCTGTTTCTCCTTTGTCA 59.115 36.000 0.00 0.00 0.00 3.58
1786 2225 1.419762 CATGGGAATGGTGGGACGATA 59.580 52.381 0.00 0.00 0.00 2.92
1831 2270 1.202915 TCTTTGGAGAGCATTGCACCA 60.203 47.619 11.91 13.70 0.00 4.17
1859 2298 1.125711 AGGTAGGACAAGCCACCGTT 61.126 55.000 0.00 0.00 40.59 4.44
1955 2395 4.559502 GCATGTGGCCGAGGTATT 57.440 55.556 0.00 0.00 36.11 1.89
2036 2478 0.038343 ATGTTGTCATTGTTGCGGGC 60.038 50.000 0.00 0.00 0.00 6.13
2057 2499 5.005740 TGAGGTCATCAAATCCAAGACAAG 58.994 41.667 0.00 0.00 34.02 3.16
2073 2515 3.924114 TTGTGGAGAAAGTTGAGGTCA 57.076 42.857 0.00 0.00 0.00 4.02
2082 2524 2.751806 GGGAGCTGAATTGTGGAGAAAG 59.248 50.000 0.00 0.00 0.00 2.62
2164 2606 4.025730 CCGTTGACATGGATGAGATAAACG 60.026 45.833 0.00 0.00 38.02 3.60
2223 2665 2.220479 GGTATCGACCAGTAACCAGC 57.780 55.000 0.00 0.00 46.12 4.85
2253 2695 5.069119 TCCTCAAGCGTGTGATCTAACATAT 59.931 40.000 3.17 0.00 31.49 1.78
2254 2696 4.401202 TCCTCAAGCGTGTGATCTAACATA 59.599 41.667 3.17 0.00 31.49 2.29
2281 2723 5.702865 CTTATCCGGACATTTGCATTATGG 58.297 41.667 6.12 0.00 0.00 2.74
2298 2740 4.864704 TTGTTTTCAACCTGGCTTATCC 57.135 40.909 0.00 0.00 34.60 2.59
2415 2857 4.201724 GCTTGGTATCACTGAAATGTCGAC 60.202 45.833 9.11 9.11 0.00 4.20
2432 2874 5.627503 GCCAAATCATCATAAAAGGCTTGGT 60.628 40.000 0.00 0.00 37.89 3.67
2516 2964 8.961634 ACACGAGCAATATACAGATATACAGAT 58.038 33.333 0.00 0.00 0.00 2.90
2517 2965 8.336801 ACACGAGCAATATACAGATATACAGA 57.663 34.615 0.00 0.00 0.00 3.41
2518 2966 8.854312 CAACACGAGCAATATACAGATATACAG 58.146 37.037 0.00 0.00 0.00 2.74
2519 2967 8.573035 TCAACACGAGCAATATACAGATATACA 58.427 33.333 0.00 0.00 0.00 2.29
2520 2968 8.965986 TCAACACGAGCAATATACAGATATAC 57.034 34.615 0.00 0.00 0.00 1.47
2521 2969 8.244113 CCTCAACACGAGCAATATACAGATATA 58.756 37.037 0.00 0.00 40.78 0.86
2522 2970 7.093354 CCTCAACACGAGCAATATACAGATAT 58.907 38.462 0.00 0.00 40.78 1.63
2523 2971 6.447162 CCTCAACACGAGCAATATACAGATA 58.553 40.000 0.00 0.00 40.78 1.98
2539 2988 2.531522 AAAAAGCATGGCCTCAACAC 57.468 45.000 3.32 0.00 0.00 3.32
2561 3011 3.133901 AGCCACTTGTTGTTTAAAAGGGG 59.866 43.478 1.35 1.35 45.64 4.79
2562 3012 4.400529 AGCCACTTGTTGTTTAAAAGGG 57.599 40.909 0.00 0.00 0.00 3.95
2596 3046 0.669625 GCAGACTACCCACCGTTGAC 60.670 60.000 0.00 0.00 0.00 3.18
2597 3047 0.830444 AGCAGACTACCCACCGTTGA 60.830 55.000 0.00 0.00 0.00 3.18
2598 3048 0.034896 AAGCAGACTACCCACCGTTG 59.965 55.000 0.00 0.00 0.00 4.10
2599 3049 0.034896 CAAGCAGACTACCCACCGTT 59.965 55.000 0.00 0.00 0.00 4.44
2600 3050 1.119574 ACAAGCAGACTACCCACCGT 61.120 55.000 0.00 0.00 0.00 4.83
2601 3051 0.670546 CACAAGCAGACTACCCACCG 60.671 60.000 0.00 0.00 0.00 4.94
2602 3052 0.396811 ACACAAGCAGACTACCCACC 59.603 55.000 0.00 0.00 0.00 4.61
2603 3053 1.202651 ACACACAAGCAGACTACCCAC 60.203 52.381 0.00 0.00 0.00 4.61
2604 3054 1.128200 ACACACAAGCAGACTACCCA 58.872 50.000 0.00 0.00 0.00 4.51
2605 3055 1.070134 TCACACACAAGCAGACTACCC 59.930 52.381 0.00 0.00 0.00 3.69
2676 3129 2.029918 GCAGACCCACTTGTTTCCATTC 60.030 50.000 0.00 0.00 0.00 2.67
2705 3158 4.274950 ACAACCAGTACAACTTGAATTCCG 59.725 41.667 2.27 0.00 0.00 4.30
2708 3161 6.062095 AGCTACAACCAGTACAACTTGAATT 58.938 36.000 0.00 0.00 0.00 2.17
2779 3232 9.516314 GAGGTCCATGCTATAAACAATAAAAAC 57.484 33.333 0.00 0.00 0.00 2.43
2786 3259 6.808321 ACTAGAGGTCCATGCTATAAACAA 57.192 37.500 0.00 0.00 0.00 2.83
2825 3298 5.820131 TGCAACAACAGAAACATACAAGAG 58.180 37.500 0.00 0.00 0.00 2.85
2827 3300 5.107760 GCATGCAACAACAGAAACATACAAG 60.108 40.000 14.21 0.00 0.00 3.16
2830 3303 4.549458 AGCATGCAACAACAGAAACATAC 58.451 39.130 21.98 0.00 0.00 2.39
2861 3334 6.930068 AGACTAGGCTTACTTTTGTAGGAA 57.070 37.500 0.00 0.00 34.35 3.36
2875 3348 4.878397 GCAACATGATAACAAGACTAGGCT 59.122 41.667 0.00 0.00 0.00 4.58
2876 3349 4.035675 GGCAACATGATAACAAGACTAGGC 59.964 45.833 0.00 0.00 0.00 3.93
2903 3376 7.525688 TTGAGCATCTTTCAACTCTTATACG 57.474 36.000 0.00 0.00 34.92 3.06
3053 3528 4.818546 ACATGTCTTCAGGTTCAGAGTTTG 59.181 41.667 0.00 0.00 34.88 2.93
3068 3543 6.483640 GTCCAGAGTTCAAAAGTACATGTCTT 59.516 38.462 0.00 3.04 0.00 3.01
3072 3547 5.180117 CAGGTCCAGAGTTCAAAAGTACATG 59.820 44.000 0.00 0.00 0.00 3.21
3079 3554 3.135712 TGCTACAGGTCCAGAGTTCAAAA 59.864 43.478 0.00 0.00 0.00 2.44
3091 3566 3.118629 TCCATCTCACATTGCTACAGGTC 60.119 47.826 0.00 0.00 0.00 3.85
3101 3576 7.667219 AGAAACAAGTGTTATCCATCTCACATT 59.333 33.333 0.00 0.00 37.25 2.71
3111 3586 8.299570 ACATTCATGAAGAAACAAGTGTTATCC 58.700 33.333 14.54 0.00 40.22 2.59
3126 3601 8.830580 ACGATCCACTAAATAACATTCATGAAG 58.169 33.333 14.54 8.57 0.00 3.02
3170 3646 2.729882 GTGTACCTACGTTCAGCTTGTG 59.270 50.000 0.00 0.00 0.00 3.33
3205 3681 4.665451 TGAATCACAAACCATGGATCAGT 58.335 39.130 21.47 6.49 0.00 3.41
3256 3735 2.949644 ACAAACTCAAACTACCCACTGC 59.050 45.455 0.00 0.00 0.00 4.40
3326 3808 7.062138 CCAAGACGGACACATTTCAATTTTATG 59.938 37.037 0.00 0.00 36.56 1.90
3402 3888 8.181573 TGAATAGCGAATTTGGTTCAGAATTAC 58.818 33.333 2.03 0.00 36.60 1.89
3405 3891 6.599244 TCTGAATAGCGAATTTGGTTCAGAAT 59.401 34.615 19.92 0.42 44.81 2.40
3422 3908 8.037382 TCTTTTGTGCTGAGAAATCTGAATAG 57.963 34.615 0.00 0.00 0.00 1.73
3427 3913 6.501781 AGTTTCTTTTGTGCTGAGAAATCTG 58.498 36.000 0.00 0.00 40.36 2.90
3436 3922 9.462174 TTTGTCAATATAGTTTCTTTTGTGCTG 57.538 29.630 0.00 0.00 0.00 4.41
3470 3956 5.705905 AGATGTACTAACAAGAAAAGTGCCC 59.294 40.000 0.00 0.00 39.58 5.36
3471 3957 6.426937 TCAGATGTACTAACAAGAAAAGTGCC 59.573 38.462 0.00 0.00 39.58 5.01
3472 3958 7.421530 TCAGATGTACTAACAAGAAAAGTGC 57.578 36.000 0.00 0.00 39.58 4.40
3515 4488 8.680903 CCACTTTTAAGCATCAACTTATCAGAT 58.319 33.333 0.00 0.00 32.35 2.90
3516 4489 7.665559 ACCACTTTTAAGCATCAACTTATCAGA 59.334 33.333 0.00 0.00 32.35 3.27
3517 4490 7.820648 ACCACTTTTAAGCATCAACTTATCAG 58.179 34.615 0.00 0.00 32.35 2.90
3518 4491 7.759489 ACCACTTTTAAGCATCAACTTATCA 57.241 32.000 0.00 0.00 32.35 2.15
3520 4493 9.908152 GTTTACCACTTTTAAGCATCAACTTAT 57.092 29.630 0.00 0.00 32.35 1.73
3521 4494 8.354426 GGTTTACCACTTTTAAGCATCAACTTA 58.646 33.333 0.00 0.00 35.64 2.24
3522 4495 7.147811 TGGTTTACCACTTTTAAGCATCAACTT 60.148 33.333 0.00 0.00 42.01 2.66
3523 4496 6.322712 TGGTTTACCACTTTTAAGCATCAACT 59.677 34.615 0.00 0.00 42.01 3.16
3524 4497 6.508777 TGGTTTACCACTTTTAAGCATCAAC 58.491 36.000 0.00 0.00 42.01 3.18
3525 4498 6.716934 TGGTTTACCACTTTTAAGCATCAA 57.283 33.333 0.00 0.00 42.01 2.57
3556 4529 2.023501 AGCAGAGGAGGTTCAGGATAGT 60.024 50.000 0.00 0.00 0.00 2.12
3608 4581 4.934356 TCAAAAGCTCCCACATATCCTTT 58.066 39.130 0.00 0.00 0.00 3.11
3630 4603 2.417719 GAGACTTTGTCACTCGCCATT 58.582 47.619 0.46 0.00 34.60 3.16
3666 4640 3.305881 GCAAGCAAGGAAATGAAGCTCTT 60.306 43.478 0.00 0.00 33.83 2.85
3673 4647 4.877378 AGAATTGCAAGCAAGGAAATGA 57.123 36.364 13.35 0.00 39.47 2.57
3734 4711 8.922676 CGGTTACATGATACATAACATCCTAAC 58.077 37.037 0.00 0.00 31.66 2.34
3743 4720 5.538849 TGCTCCGGTTACATGATACATAA 57.461 39.130 0.00 0.00 0.00 1.90
3750 4727 2.159014 GGTACATGCTCCGGTTACATGA 60.159 50.000 28.37 15.89 43.04 3.07
3755 4732 1.502690 ATGGGTACATGCTCCGGTTA 58.497 50.000 0.00 0.00 35.57 2.85
3757 4734 1.623811 GATATGGGTACATGCTCCGGT 59.376 52.381 0.00 0.00 37.97 5.28
3758 4735 1.066143 GGATATGGGTACATGCTCCGG 60.066 57.143 0.00 0.00 37.97 5.14
3759 4736 1.902508 AGGATATGGGTACATGCTCCG 59.097 52.381 0.00 0.00 41.48 4.63
3773 4750 6.430962 AGCAGTTGTCATGATACAGGATAT 57.569 37.500 0.00 0.00 0.00 1.63
3795 4774 2.348411 AAACAGACCTGGGTCACAAG 57.652 50.000 20.16 10.20 46.76 3.16
3804 4783 4.878397 AGTCTTCTTCACAAAACAGACCTG 59.122 41.667 0.00 0.00 32.62 4.00
3813 4792 4.142026 TGAACGGAGAGTCTTCTTCACAAA 60.142 41.667 8.45 0.00 32.53 2.83
3848 4829 4.321718 CCAAGCGGATCAGACAATATCAT 58.678 43.478 0.00 0.00 0.00 2.45
3936 4917 7.383300 GCTAACAGAAACAGATTTTCAGCAATT 59.617 33.333 0.00 0.00 0.00 2.32
3990 4971 5.563842 CCTCAAAGCGACATTTCAGTATTC 58.436 41.667 0.00 0.00 0.00 1.75
3993 4974 2.742053 GCCTCAAAGCGACATTTCAGTA 59.258 45.455 0.00 0.00 0.00 2.74
4017 4998 6.824305 AAAACACTCCTGAATCAACCTATG 57.176 37.500 0.00 0.00 0.00 2.23
4049 5098 2.307098 CACTCCTGAATCAACCTCCCTT 59.693 50.000 0.00 0.00 0.00 3.95
4066 5115 5.471456 ACATTCTCCTGAATCACAAACACTC 59.529 40.000 0.00 0.00 40.61 3.51
4070 5119 6.650807 TCACTACATTCTCCTGAATCACAAAC 59.349 38.462 0.00 0.00 40.61 2.93
4071 5120 6.768483 TCACTACATTCTCCTGAATCACAAA 58.232 36.000 0.00 0.00 40.61 2.83
4072 5121 6.358974 TCACTACATTCTCCTGAATCACAA 57.641 37.500 0.00 0.00 40.61 3.33
4074 5123 6.577103 TCATCACTACATTCTCCTGAATCAC 58.423 40.000 0.00 0.00 40.61 3.06
4075 5124 6.796785 TCATCACTACATTCTCCTGAATCA 57.203 37.500 0.00 0.00 40.61 2.57
4076 5125 7.930325 TCATTCATCACTACATTCTCCTGAATC 59.070 37.037 0.00 0.00 40.61 2.52
4077 5126 7.799081 TCATTCATCACTACATTCTCCTGAAT 58.201 34.615 0.00 0.00 43.10 2.57
4078 5127 7.186570 TCATTCATCACTACATTCTCCTGAA 57.813 36.000 0.00 0.00 36.54 3.02
4079 5128 6.796785 TCATTCATCACTACATTCTCCTGA 57.203 37.500 0.00 0.00 0.00 3.86
4080 5129 7.215085 TCATCATTCATCACTACATTCTCCTG 58.785 38.462 0.00 0.00 0.00 3.86
4083 5132 8.429493 TGTTCATCATTCATCACTACATTCTC 57.571 34.615 0.00 0.00 0.00 2.87
4086 5135 7.121611 TGCTTGTTCATCATTCATCACTACATT 59.878 33.333 0.00 0.00 0.00 2.71
4088 5137 5.939296 TGCTTGTTCATCATTCATCACTACA 59.061 36.000 0.00 0.00 0.00 2.74
4089 5138 6.314648 TCTGCTTGTTCATCATTCATCACTAC 59.685 38.462 0.00 0.00 0.00 2.73
4090 5139 6.408869 TCTGCTTGTTCATCATTCATCACTA 58.591 36.000 0.00 0.00 0.00 2.74
4091 5140 5.250982 TCTGCTTGTTCATCATTCATCACT 58.749 37.500 0.00 0.00 0.00 3.41
4093 5142 5.250982 ACTCTGCTTGTTCATCATTCATCA 58.749 37.500 0.00 0.00 0.00 3.07
4105 5160 5.297029 GGTTTCTCTTACAACTCTGCTTGTT 59.703 40.000 0.00 0.00 35.87 2.83
4116 5171 5.620206 TGCATCTTGAGGTTTCTCTTACAA 58.380 37.500 0.00 0.00 40.58 2.41
4123 5178 4.090761 TCACTTGCATCTTGAGGTTTCT 57.909 40.909 0.00 0.00 0.00 2.52
4124 5179 4.276926 AGTTCACTTGCATCTTGAGGTTTC 59.723 41.667 0.00 0.00 0.00 2.78
4125 5180 4.210331 AGTTCACTTGCATCTTGAGGTTT 58.790 39.130 0.00 0.00 0.00 3.27
4153 5663 6.951971 AGCTACTGGATTGACAAAATACTCT 58.048 36.000 0.00 0.00 0.00 3.24
4154 5664 7.982354 ACTAGCTACTGGATTGACAAAATACTC 59.018 37.037 0.00 0.00 0.00 2.59
4167 5680 4.511786 TCAGTCTGACTAGCTACTGGAT 57.488 45.455 10.47 0.00 39.80 3.41
4194 5707 8.669243 CCAAGTGAAGTGGTCTAGAAAATATTC 58.331 37.037 0.00 0.00 35.70 1.75
4196 5709 7.690256 ACCAAGTGAAGTGGTCTAGAAAATAT 58.310 34.615 0.00 0.00 46.79 1.28
4198 5711 5.941788 ACCAAGTGAAGTGGTCTAGAAAAT 58.058 37.500 0.00 0.00 46.79 1.82
4212 6101 2.708216 TTCAGTGCTGACCAAGTGAA 57.292 45.000 0.79 0.00 39.66 3.18
4216 6105 3.378112 TGAACTTTTCAGTGCTGACCAAG 59.622 43.478 14.26 14.26 39.66 3.61
4217 6106 3.351740 TGAACTTTTCAGTGCTGACCAA 58.648 40.909 0.79 0.00 39.66 3.67
4256 6153 8.726870 ATATTTACCGCAGCTAGAAACTTAAA 57.273 30.769 0.00 0.00 0.00 1.52
4272 6169 6.201044 GGTGACTGTGATGAGAATATTTACCG 59.799 42.308 0.00 0.00 0.00 4.02
4289 6186 1.141053 GTGTTTCCTCCTGGTGACTGT 59.859 52.381 0.00 0.00 34.23 3.55
4291 6188 1.417890 CAGTGTTTCCTCCTGGTGACT 59.582 52.381 0.00 0.00 34.23 3.41
4297 6194 1.457346 GGATGCAGTGTTTCCTCCTG 58.543 55.000 0.00 0.00 0.00 3.86
4351 6248 5.762218 ACGTTGTGAAGTGTACTAGTCTAGT 59.238 40.000 16.65 16.65 42.68 2.57
4352 6249 6.238610 ACGTTGTGAAGTGTACTAGTCTAG 57.761 41.667 0.00 5.27 0.00 2.43
4353 6250 5.180117 GGACGTTGTGAAGTGTACTAGTCTA 59.820 44.000 0.00 0.00 0.00 2.59
4354 6251 4.023365 GGACGTTGTGAAGTGTACTAGTCT 60.023 45.833 0.00 0.00 0.00 3.24
4355 6252 4.225208 GGACGTTGTGAAGTGTACTAGTC 58.775 47.826 0.00 0.00 0.00 2.59
4356 6253 3.633525 TGGACGTTGTGAAGTGTACTAGT 59.366 43.478 0.00 0.00 0.00 2.57
4357 6254 4.233123 TGGACGTTGTGAAGTGTACTAG 57.767 45.455 0.00 0.00 0.00 2.57
4423 6320 4.034510 CCTGAATTGTTCGAAGGTATGAGC 59.965 45.833 0.00 0.00 0.00 4.26
4446 6343 6.037726 TCATGCATGTACAGAATCAAAATGC 58.962 36.000 25.43 3.49 39.44 3.56
4451 6348 6.038936 CCTGAATCATGCATGTACAGAATCAA 59.961 38.462 30.90 13.30 0.00 2.57
4458 6355 3.002038 TGCCTGAATCATGCATGTACA 57.998 42.857 25.43 20.28 30.70 2.90
4483 6380 5.372547 AAGTTTTCTGTATCTTTTCCGCC 57.627 39.130 0.00 0.00 0.00 6.13
4486 6383 7.712797 TGTCCAAAGTTTTCTGTATCTTTTCC 58.287 34.615 0.00 0.00 0.00 3.13
4520 6417 3.217626 ACCAAAGCAGACCTCTTTCAAG 58.782 45.455 0.00 0.00 31.94 3.02
4526 6423 1.348036 GGTGTACCAAAGCAGACCTCT 59.652 52.381 0.00 0.00 35.64 3.69
4527 6424 1.610886 GGGTGTACCAAAGCAGACCTC 60.611 57.143 3.11 0.00 39.85 3.85
4528 6425 0.400594 GGGTGTACCAAAGCAGACCT 59.599 55.000 3.11 0.00 39.85 3.85
4529 6426 0.608308 GGGGTGTACCAAAGCAGACC 60.608 60.000 3.11 0.00 42.91 3.85
4530 6427 0.608308 GGGGGTGTACCAAAGCAGAC 60.608 60.000 3.11 0.00 42.91 3.51
4531 6428 1.765074 GGGGGTGTACCAAAGCAGA 59.235 57.895 3.11 0.00 42.91 4.26
4532 6429 4.415783 GGGGGTGTACCAAAGCAG 57.584 61.111 3.11 0.00 42.91 4.24
4546 6443 4.851179 GTTAAGCGAGGGCGGGGG 62.851 72.222 0.00 0.00 46.35 5.40
4548 6445 2.359570 ATACGTTAAGCGAGGGCGGG 62.360 60.000 0.00 0.00 46.35 6.13
4549 6446 0.311790 TATACGTTAAGCGAGGGCGG 59.688 55.000 0.00 0.00 46.35 6.13
4550 6447 2.049228 CTTATACGTTAAGCGAGGGCG 58.951 52.381 0.00 0.00 46.35 6.13
4551 6448 2.401351 CCTTATACGTTAAGCGAGGGC 58.599 52.381 0.00 0.00 44.77 5.19
4552 6449 3.022607 CCCTTATACGTTAAGCGAGGG 57.977 52.381 0.00 0.00 42.21 4.30
4553 6450 2.223876 TGCCCTTATACGTTAAGCGAGG 60.224 50.000 0.00 0.88 44.77 4.63
4554 6451 3.088194 TGCCCTTATACGTTAAGCGAG 57.912 47.619 0.00 0.00 44.77 5.03
4555 6452 3.738830 ATGCCCTTATACGTTAAGCGA 57.261 42.857 0.00 0.00 44.77 4.93
4557 6454 5.278604 CCAAAATGCCCTTATACGTTAAGC 58.721 41.667 0.00 0.00 0.00 3.09
4558 6455 5.735070 GCCCAAAATGCCCTTATACGTTAAG 60.735 44.000 0.00 1.90 0.00 1.85
4559 6456 4.098196 GCCCAAAATGCCCTTATACGTTAA 59.902 41.667 0.00 0.00 0.00 2.01
4560 6457 3.633065 GCCCAAAATGCCCTTATACGTTA 59.367 43.478 0.00 0.00 0.00 3.18
4561 6458 2.429250 GCCCAAAATGCCCTTATACGTT 59.571 45.455 0.00 0.00 0.00 3.99
4562 6459 2.028876 GCCCAAAATGCCCTTATACGT 58.971 47.619 0.00 0.00 0.00 3.57
4563 6460 2.028130 TGCCCAAAATGCCCTTATACG 58.972 47.619 0.00 0.00 0.00 3.06
4564 6461 4.320935 CGTATGCCCAAAATGCCCTTATAC 60.321 45.833 0.00 0.00 0.00 1.47
4565 6462 3.823873 CGTATGCCCAAAATGCCCTTATA 59.176 43.478 0.00 0.00 0.00 0.98
4566 6463 2.627699 CGTATGCCCAAAATGCCCTTAT 59.372 45.455 0.00 0.00 0.00 1.73
4567 6464 2.028130 CGTATGCCCAAAATGCCCTTA 58.972 47.619 0.00 0.00 0.00 2.69
4568 6465 0.823460 CGTATGCCCAAAATGCCCTT 59.177 50.000 0.00 0.00 0.00 3.95
4569 6466 1.042559 CCGTATGCCCAAAATGCCCT 61.043 55.000 0.00 0.00 0.00 5.19
4570 6467 1.326951 ACCGTATGCCCAAAATGCCC 61.327 55.000 0.00 0.00 0.00 5.36
4571 6468 0.179113 CACCGTATGCCCAAAATGCC 60.179 55.000 0.00 0.00 0.00 4.40
4572 6469 3.344064 CACCGTATGCCCAAAATGC 57.656 52.632 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.