Multiple sequence alignment - TraesCS6A01G010700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G010700 chr6A 100.000 3423 0 0 480 3902 5066728 5070150 0.000000e+00 6322.0
1 TraesCS6A01G010700 chr6A 100.000 141 0 0 1 141 5066249 5066389 1.080000e-65 261.0
2 TraesCS6A01G010700 chr6A 91.304 92 6 2 613 703 18902258 18902168 1.470000e-24 124.0
3 TraesCS6A01G010700 chr4A 98.288 3213 40 3 704 3902 584413613 584410402 0.000000e+00 5614.0
4 TraesCS6A01G010700 chr3A 98.010 3216 48 4 702 3902 734137543 734134329 0.000000e+00 5570.0
5 TraesCS6A01G010700 chr3A 97.636 3215 58 5 702 3902 18252352 18249142 0.000000e+00 5500.0
6 TraesCS6A01G010700 chr3A 97.881 3020 42 7 898 3902 550991818 550994830 0.000000e+00 5203.0
7 TraesCS6A01G010700 chr3A 88.481 2205 230 14 1707 3902 706253112 706255301 0.000000e+00 2643.0
8 TraesCS6A01G010700 chr3A 96.482 199 7 0 704 902 550978207 550978405 2.910000e-86 329.0
9 TraesCS6A01G010700 chr2A 97.542 3214 56 7 703 3902 152005306 152002102 0.000000e+00 5476.0
10 TraesCS6A01G010700 chr5D 91.644 2226 142 14 1707 3902 432138392 432136181 0.000000e+00 3040.0
11 TraesCS6A01G010700 chr5D 83.106 734 82 23 698 1394 432139549 432138821 7.110000e-177 630.0
12 TraesCS6A01G010700 chr5D 84.848 297 22 13 1392 1677 432138744 432138460 1.070000e-70 278.0
13 TraesCS6A01G010700 chr1D 93.152 1840 108 9 2067 3902 13203606 13201781 0.000000e+00 2684.0
14 TraesCS6A01G010700 chr1D 83.810 735 75 20 702 1394 13204482 13203750 0.000000e+00 658.0
15 TraesCS6A01G010700 chr1D 84.530 362 41 9 704 1053 316631007 316630649 1.040000e-90 344.0
16 TraesCS6A01G010700 chr3B 87.800 2205 244 13 1707 3902 3118209 3116021 0.000000e+00 2558.0
17 TraesCS6A01G010700 chr3B 80.303 726 99 19 702 1394 3119490 3118776 3.480000e-140 508.0
18 TraesCS6A01G010700 chr6D 80.636 723 86 29 701 1394 325709713 325709016 9.670000e-141 510.0
19 TraesCS6A01G010700 chr6D 82.403 466 40 22 1392 1824 325708939 325708483 6.160000e-98 368.0
20 TraesCS6A01G010700 chr6D 89.000 100 8 3 486 585 18777973 18777877 1.900000e-23 121.0
21 TraesCS6A01G010700 chr6D 100.000 33 0 0 613 645 18777758 18777726 1.170000e-05 62.1
22 TraesCS6A01G010700 chr6B 77.282 515 111 5 1746 2259 183306185 183306694 8.200000e-77 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G010700 chr6A 5066249 5070150 3901 False 3291.5 6322 100.000000 1 3902 2 chr6A.!!$F1 3901
1 TraesCS6A01G010700 chr4A 584410402 584413613 3211 True 5614.0 5614 98.288000 704 3902 1 chr4A.!!$R1 3198
2 TraesCS6A01G010700 chr3A 734134329 734137543 3214 True 5570.0 5570 98.010000 702 3902 1 chr3A.!!$R2 3200
3 TraesCS6A01G010700 chr3A 18249142 18252352 3210 True 5500.0 5500 97.636000 702 3902 1 chr3A.!!$R1 3200
4 TraesCS6A01G010700 chr3A 550991818 550994830 3012 False 5203.0 5203 97.881000 898 3902 1 chr3A.!!$F2 3004
5 TraesCS6A01G010700 chr3A 706253112 706255301 2189 False 2643.0 2643 88.481000 1707 3902 1 chr3A.!!$F3 2195
6 TraesCS6A01G010700 chr2A 152002102 152005306 3204 True 5476.0 5476 97.542000 703 3902 1 chr2A.!!$R1 3199
7 TraesCS6A01G010700 chr5D 432136181 432139549 3368 True 1316.0 3040 86.532667 698 3902 3 chr5D.!!$R1 3204
8 TraesCS6A01G010700 chr1D 13201781 13204482 2701 True 1671.0 2684 88.481000 702 3902 2 chr1D.!!$R2 3200
9 TraesCS6A01G010700 chr3B 3116021 3119490 3469 True 1533.0 2558 84.051500 702 3902 2 chr3B.!!$R1 3200
10 TraesCS6A01G010700 chr6D 325708483 325709713 1230 True 439.0 510 81.519500 701 1824 2 chr6D.!!$R2 1123
11 TraesCS6A01G010700 chr6B 183306185 183306694 509 False 298.0 298 77.282000 1746 2259 1 chr6B.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 696 0.031449 GTCGTAGATGGGCTGCTCTC 59.969 60.000 0.0 0.0 40.67 3.20 F
696 697 1.109920 TCGTAGATGGGCTGCTCTCC 61.110 60.000 0.0 0.0 0.00 3.71 F
893 903 1.673920 GGAAACGCACAGGAAACAGAA 59.326 47.619 0.0 0.0 0.00 3.02 F
2612 3045 1.348036 GGTTACCAGCACCAAGAGAGT 59.652 52.381 0.0 0.0 34.04 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2438 0.453793 CAAACATTATCGGGCGCCAA 59.546 50.000 30.85 16.79 0.00 4.52 R
2612 3045 2.872245 CTGGTCGTCTTTTGCTTTCTCA 59.128 45.455 0.00 0.00 0.00 3.27 R
2786 3219 1.065854 AGATGTCCGCTGCTTTTAGCT 60.066 47.619 0.00 0.00 42.97 3.32 R
3605 4075 2.299013 ACCTTCGACATGCTCAACTACA 59.701 45.455 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.668147 TTGCCATTAGCTGCCAAGA 57.332 47.368 0.00 0.00 44.23 3.02
19 20 2.148446 TTGCCATTAGCTGCCAAGAT 57.852 45.000 0.00 0.00 44.23 2.40
20 21 1.395635 TGCCATTAGCTGCCAAGATG 58.604 50.000 0.00 0.00 44.23 2.90
21 22 1.341285 TGCCATTAGCTGCCAAGATGT 60.341 47.619 0.00 0.00 44.23 3.06
22 23 1.336125 GCCATTAGCTGCCAAGATGTC 59.664 52.381 0.00 0.00 38.99 3.06
23 24 2.928334 CCATTAGCTGCCAAGATGTCT 58.072 47.619 0.00 0.00 0.00 3.41
24 25 2.617308 CCATTAGCTGCCAAGATGTCTG 59.383 50.000 0.00 0.00 0.00 3.51
25 26 3.276857 CATTAGCTGCCAAGATGTCTGT 58.723 45.455 0.00 0.00 0.00 3.41
26 27 4.445453 CATTAGCTGCCAAGATGTCTGTA 58.555 43.478 0.00 0.00 0.00 2.74
27 28 2.393271 AGCTGCCAAGATGTCTGTAC 57.607 50.000 0.00 0.00 0.00 2.90
28 29 1.065854 AGCTGCCAAGATGTCTGTACC 60.066 52.381 0.00 0.00 0.00 3.34
29 30 2.014068 GCTGCCAAGATGTCTGTACCC 61.014 57.143 0.00 0.00 0.00 3.69
30 31 1.556911 CTGCCAAGATGTCTGTACCCT 59.443 52.381 0.00 0.00 0.00 4.34
31 32 1.985159 TGCCAAGATGTCTGTACCCTT 59.015 47.619 0.00 0.00 0.00 3.95
32 33 2.290260 TGCCAAGATGTCTGTACCCTTG 60.290 50.000 0.00 0.00 36.15 3.61
33 34 2.027192 GCCAAGATGTCTGTACCCTTGA 60.027 50.000 0.00 0.00 37.41 3.02
34 35 3.370953 GCCAAGATGTCTGTACCCTTGAT 60.371 47.826 0.00 0.00 37.41 2.57
35 36 4.141711 GCCAAGATGTCTGTACCCTTGATA 60.142 45.833 0.00 0.00 37.41 2.15
36 37 5.605534 CCAAGATGTCTGTACCCTTGATAG 58.394 45.833 0.00 0.00 37.41 2.08
37 38 5.129485 CCAAGATGTCTGTACCCTTGATAGT 59.871 44.000 0.00 0.00 37.41 2.12
38 39 6.323996 CCAAGATGTCTGTACCCTTGATAGTA 59.676 42.308 0.00 0.00 37.41 1.82
39 40 7.147724 CCAAGATGTCTGTACCCTTGATAGTAA 60.148 40.741 0.00 0.00 37.41 2.24
40 41 7.589958 AGATGTCTGTACCCTTGATAGTAAG 57.410 40.000 0.00 0.00 0.00 2.34
41 42 6.551601 AGATGTCTGTACCCTTGATAGTAAGG 59.448 42.308 0.00 0.00 45.51 2.69
42 43 4.404715 TGTCTGTACCCTTGATAGTAAGGC 59.595 45.833 0.00 0.00 44.75 4.35
43 44 4.650131 GTCTGTACCCTTGATAGTAAGGCT 59.350 45.833 0.00 0.00 44.75 4.58
44 45 4.649674 TCTGTACCCTTGATAGTAAGGCTG 59.350 45.833 0.00 0.00 44.75 4.85
45 46 4.616553 TGTACCCTTGATAGTAAGGCTGA 58.383 43.478 0.00 0.00 44.75 4.26
46 47 5.216622 TGTACCCTTGATAGTAAGGCTGAT 58.783 41.667 0.00 0.00 44.75 2.90
47 48 4.696479 ACCCTTGATAGTAAGGCTGATG 57.304 45.455 0.00 0.00 44.75 3.07
48 49 4.298626 ACCCTTGATAGTAAGGCTGATGA 58.701 43.478 0.00 0.00 44.75 2.92
49 50 4.346418 ACCCTTGATAGTAAGGCTGATGAG 59.654 45.833 0.00 0.00 44.75 2.90
50 51 4.346418 CCCTTGATAGTAAGGCTGATGAGT 59.654 45.833 0.00 0.00 44.75 3.41
51 52 5.163258 CCCTTGATAGTAAGGCTGATGAGTT 60.163 44.000 0.00 0.00 44.75 3.01
52 53 5.757320 CCTTGATAGTAAGGCTGATGAGTTG 59.243 44.000 0.00 0.00 40.67 3.16
53 54 5.939764 TGATAGTAAGGCTGATGAGTTGT 57.060 39.130 0.00 0.00 0.00 3.32
54 55 6.299805 TGATAGTAAGGCTGATGAGTTGTT 57.700 37.500 0.00 0.00 0.00 2.83
55 56 7.418337 TGATAGTAAGGCTGATGAGTTGTTA 57.582 36.000 0.00 0.00 0.00 2.41
56 57 8.023021 TGATAGTAAGGCTGATGAGTTGTTAT 57.977 34.615 0.00 0.00 0.00 1.89
57 58 9.143155 TGATAGTAAGGCTGATGAGTTGTTATA 57.857 33.333 0.00 0.00 0.00 0.98
60 61 8.256356 AGTAAGGCTGATGAGTTGTTATATCT 57.744 34.615 0.00 0.00 0.00 1.98
61 62 8.147058 AGTAAGGCTGATGAGTTGTTATATCTG 58.853 37.037 0.00 0.00 0.00 2.90
62 63 6.737720 AGGCTGATGAGTTGTTATATCTGA 57.262 37.500 0.00 0.00 0.00 3.27
63 64 7.313740 AGGCTGATGAGTTGTTATATCTGAT 57.686 36.000 0.00 0.00 0.00 2.90
64 65 7.160049 AGGCTGATGAGTTGTTATATCTGATG 58.840 38.462 0.00 0.00 0.00 3.07
65 66 6.933521 GGCTGATGAGTTGTTATATCTGATGT 59.066 38.462 0.00 0.00 0.00 3.06
66 67 7.095313 GGCTGATGAGTTGTTATATCTGATGTG 60.095 40.741 0.00 0.00 0.00 3.21
67 68 7.440556 GCTGATGAGTTGTTATATCTGATGTGT 59.559 37.037 0.00 0.00 0.00 3.72
68 69 9.971922 CTGATGAGTTGTTATATCTGATGTGTA 57.028 33.333 0.00 0.00 0.00 2.90
81 82 9.716531 ATATCTGATGTGTATGTATCCTTGTTG 57.283 33.333 0.00 0.00 0.00 3.33
82 83 5.817296 TCTGATGTGTATGTATCCTTGTTGC 59.183 40.000 0.00 0.00 0.00 4.17
83 84 5.744171 TGATGTGTATGTATCCTTGTTGCT 58.256 37.500 0.00 0.00 0.00 3.91
84 85 5.585844 TGATGTGTATGTATCCTTGTTGCTG 59.414 40.000 0.00 0.00 0.00 4.41
85 86 4.260985 TGTGTATGTATCCTTGTTGCTGG 58.739 43.478 0.00 0.00 0.00 4.85
86 87 4.261801 GTGTATGTATCCTTGTTGCTGGT 58.738 43.478 0.00 0.00 0.00 4.00
87 88 5.046231 TGTGTATGTATCCTTGTTGCTGGTA 60.046 40.000 0.00 0.00 0.00 3.25
88 89 5.523916 GTGTATGTATCCTTGTTGCTGGTAG 59.476 44.000 0.00 0.00 0.00 3.18
89 90 2.985896 TGTATCCTTGTTGCTGGTAGC 58.014 47.619 0.00 0.00 42.82 3.58
90 91 2.571653 TGTATCCTTGTTGCTGGTAGCT 59.428 45.455 2.24 0.00 42.97 3.32
91 92 2.887151 ATCCTTGTTGCTGGTAGCTT 57.113 45.000 0.00 0.00 42.97 3.74
92 93 2.185004 TCCTTGTTGCTGGTAGCTTC 57.815 50.000 0.00 0.00 42.97 3.86
93 94 1.419762 TCCTTGTTGCTGGTAGCTTCA 59.580 47.619 0.00 0.00 42.97 3.02
94 95 2.158682 TCCTTGTTGCTGGTAGCTTCAA 60.159 45.455 0.00 6.70 42.97 2.69
95 96 2.821969 CCTTGTTGCTGGTAGCTTCAAT 59.178 45.455 0.00 0.00 42.97 2.57
96 97 3.119708 CCTTGTTGCTGGTAGCTTCAATC 60.120 47.826 0.00 0.00 42.97 2.67
97 98 2.436417 TGTTGCTGGTAGCTTCAATCC 58.564 47.619 0.00 0.00 42.97 3.01
98 99 1.745653 GTTGCTGGTAGCTTCAATCCC 59.254 52.381 0.00 0.00 42.97 3.85
99 100 0.991146 TGCTGGTAGCTTCAATCCCA 59.009 50.000 0.00 0.00 42.97 4.37
100 101 1.565759 TGCTGGTAGCTTCAATCCCAT 59.434 47.619 0.00 0.00 42.97 4.00
101 102 2.225467 GCTGGTAGCTTCAATCCCATC 58.775 52.381 0.00 0.00 38.45 3.51
102 103 2.158696 GCTGGTAGCTTCAATCCCATCT 60.159 50.000 0.00 0.00 38.45 2.90
103 104 3.737850 CTGGTAGCTTCAATCCCATCTC 58.262 50.000 0.00 0.00 0.00 2.75
104 105 3.387962 TGGTAGCTTCAATCCCATCTCT 58.612 45.455 0.00 0.00 0.00 3.10
105 106 3.389329 TGGTAGCTTCAATCCCATCTCTC 59.611 47.826 0.00 0.00 0.00 3.20
106 107 3.645687 GGTAGCTTCAATCCCATCTCTCT 59.354 47.826 0.00 0.00 0.00 3.10
107 108 4.262420 GGTAGCTTCAATCCCATCTCTCTC 60.262 50.000 0.00 0.00 0.00 3.20
108 109 3.656496 AGCTTCAATCCCATCTCTCTCT 58.344 45.455 0.00 0.00 0.00 3.10
109 110 3.642848 AGCTTCAATCCCATCTCTCTCTC 59.357 47.826 0.00 0.00 0.00 3.20
110 111 3.642848 GCTTCAATCCCATCTCTCTCTCT 59.357 47.826 0.00 0.00 0.00 3.10
111 112 4.262164 GCTTCAATCCCATCTCTCTCTCTC 60.262 50.000 0.00 0.00 0.00 3.20
112 113 4.812403 TCAATCCCATCTCTCTCTCTCT 57.188 45.455 0.00 0.00 0.00 3.10
113 114 4.728772 TCAATCCCATCTCTCTCTCTCTC 58.271 47.826 0.00 0.00 0.00 3.20
114 115 4.416513 TCAATCCCATCTCTCTCTCTCTCT 59.583 45.833 0.00 0.00 0.00 3.10
115 116 4.647564 ATCCCATCTCTCTCTCTCTCTC 57.352 50.000 0.00 0.00 0.00 3.20
116 117 3.668821 TCCCATCTCTCTCTCTCTCTCT 58.331 50.000 0.00 0.00 0.00 3.10
117 118 3.648067 TCCCATCTCTCTCTCTCTCTCTC 59.352 52.174 0.00 0.00 0.00 3.20
118 119 3.649981 CCCATCTCTCTCTCTCTCTCTCT 59.350 52.174 0.00 0.00 0.00 3.10
119 120 4.262808 CCCATCTCTCTCTCTCTCTCTCTC 60.263 54.167 0.00 0.00 0.00 3.20
120 121 4.592351 CCATCTCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
121 122 5.279406 CCATCTCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
122 123 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
123 124 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
124 125 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
125 126 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
126 127 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
127 128 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
128 129 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
129 130 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
130 131 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
131 132 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
132 133 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
133 134 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
134 135 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
135 136 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
136 137 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
137 138 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
138 139 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
139 140 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
140 141 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
503 504 6.477053 TGAGCTGCTGATAGAAATACTTCT 57.523 37.500 7.01 0.00 44.37 2.85
504 505 6.882656 TGAGCTGCTGATAGAAATACTTCTT 58.117 36.000 7.01 0.00 42.17 2.52
505 506 6.760298 TGAGCTGCTGATAGAAATACTTCTTG 59.240 38.462 7.01 0.00 42.17 3.02
506 507 6.054295 AGCTGCTGATAGAAATACTTCTTGG 58.946 40.000 0.00 0.00 42.17 3.61
507 508 6.051717 GCTGCTGATAGAAATACTTCTTGGA 58.948 40.000 0.00 0.00 42.17 3.53
508 509 6.202570 GCTGCTGATAGAAATACTTCTTGGAG 59.797 42.308 0.00 0.00 42.17 3.86
509 510 6.051717 TGCTGATAGAAATACTTCTTGGAGC 58.948 40.000 0.00 0.00 42.17 4.70
510 511 6.126940 TGCTGATAGAAATACTTCTTGGAGCT 60.127 38.462 10.29 0.00 42.17 4.09
511 512 6.765512 GCTGATAGAAATACTTCTTGGAGCTT 59.234 38.462 0.00 0.00 42.17 3.74
512 513 7.281999 GCTGATAGAAATACTTCTTGGAGCTTT 59.718 37.037 0.00 0.00 42.17 3.51
513 514 9.823647 CTGATAGAAATACTTCTTGGAGCTTTA 57.176 33.333 0.00 0.00 42.17 1.85
514 515 9.601217 TGATAGAAATACTTCTTGGAGCTTTAC 57.399 33.333 0.00 0.00 42.17 2.01
515 516 9.825109 GATAGAAATACTTCTTGGAGCTTTACT 57.175 33.333 0.00 0.00 42.17 2.24
522 523 9.740710 ATACTTCTTGGAGCTTTACTTAAATGT 57.259 29.630 0.00 0.00 0.00 2.71
523 524 8.465273 ACTTCTTGGAGCTTTACTTAAATGTT 57.535 30.769 0.00 0.00 0.00 2.71
524 525 8.914011 ACTTCTTGGAGCTTTACTTAAATGTTT 58.086 29.630 0.00 0.00 0.00 2.83
525 526 9.750125 CTTCTTGGAGCTTTACTTAAATGTTTT 57.250 29.630 0.00 0.00 0.00 2.43
527 528 9.528018 TCTTGGAGCTTTACTTAAATGTTTTTG 57.472 29.630 0.00 0.00 0.00 2.44
528 529 9.528018 CTTGGAGCTTTACTTAAATGTTTTTGA 57.472 29.630 0.00 0.00 0.00 2.69
529 530 9.528018 TTGGAGCTTTACTTAAATGTTTTTGAG 57.472 29.630 0.00 0.00 35.24 3.02
530 531 8.908903 TGGAGCTTTACTTAAATGTTTTTGAGA 58.091 29.630 0.00 0.00 33.76 3.27
531 532 9.399403 GGAGCTTTACTTAAATGTTTTTGAGAG 57.601 33.333 0.00 0.00 33.76 3.20
543 544 8.424274 AATGTTTTTGAGAGATGTTTGTTTCC 57.576 30.769 0.00 0.00 0.00 3.13
544 545 7.169158 TGTTTTTGAGAGATGTTTGTTTCCT 57.831 32.000 0.00 0.00 0.00 3.36
545 546 7.035004 TGTTTTTGAGAGATGTTTGTTTCCTG 58.965 34.615 0.00 0.00 0.00 3.86
546 547 5.772825 TTTGAGAGATGTTTGTTTCCTGG 57.227 39.130 0.00 0.00 0.00 4.45
547 548 4.437682 TGAGAGATGTTTGTTTCCTGGT 57.562 40.909 0.00 0.00 0.00 4.00
548 549 4.792068 TGAGAGATGTTTGTTTCCTGGTT 58.208 39.130 0.00 0.00 0.00 3.67
549 550 4.580167 TGAGAGATGTTTGTTTCCTGGTTG 59.420 41.667 0.00 0.00 0.00 3.77
550 551 4.792068 AGAGATGTTTGTTTCCTGGTTGA 58.208 39.130 0.00 0.00 0.00 3.18
551 552 5.388654 AGAGATGTTTGTTTCCTGGTTGAT 58.611 37.500 0.00 0.00 0.00 2.57
552 553 6.542821 AGAGATGTTTGTTTCCTGGTTGATA 58.457 36.000 0.00 0.00 0.00 2.15
553 554 7.004086 AGAGATGTTTGTTTCCTGGTTGATAA 58.996 34.615 0.00 0.00 0.00 1.75
554 555 7.175641 AGAGATGTTTGTTTCCTGGTTGATAAG 59.824 37.037 0.00 0.00 0.00 1.73
555 556 6.777580 AGATGTTTGTTTCCTGGTTGATAAGT 59.222 34.615 0.00 0.00 0.00 2.24
556 557 7.942341 AGATGTTTGTTTCCTGGTTGATAAGTA 59.058 33.333 0.00 0.00 0.00 2.24
557 558 8.650143 ATGTTTGTTTCCTGGTTGATAAGTAT 57.350 30.769 0.00 0.00 0.00 2.12
558 559 7.881142 TGTTTGTTTCCTGGTTGATAAGTATG 58.119 34.615 0.00 0.00 0.00 2.39
559 560 7.721842 TGTTTGTTTCCTGGTTGATAAGTATGA 59.278 33.333 0.00 0.00 0.00 2.15
560 561 7.921786 TTGTTTCCTGGTTGATAAGTATGAG 57.078 36.000 0.00 0.00 0.00 2.90
561 562 7.252612 TGTTTCCTGGTTGATAAGTATGAGA 57.747 36.000 0.00 0.00 0.00 3.27
562 563 7.103641 TGTTTCCTGGTTGATAAGTATGAGAC 58.896 38.462 0.00 0.00 0.00 3.36
563 564 5.871396 TCCTGGTTGATAAGTATGAGACC 57.129 43.478 0.00 0.00 0.00 3.85
564 565 5.529289 TCCTGGTTGATAAGTATGAGACCT 58.471 41.667 0.00 0.00 0.00 3.85
565 566 5.363868 TCCTGGTTGATAAGTATGAGACCTG 59.636 44.000 0.00 0.00 0.00 4.00
566 567 5.363868 CCTGGTTGATAAGTATGAGACCTGA 59.636 44.000 0.00 0.00 0.00 3.86
567 568 6.127054 CCTGGTTGATAAGTATGAGACCTGAA 60.127 42.308 0.00 0.00 0.00 3.02
568 569 7.419518 CCTGGTTGATAAGTATGAGACCTGAAT 60.420 40.741 0.00 0.00 0.00 2.57
569 570 7.861629 TGGTTGATAAGTATGAGACCTGAATT 58.138 34.615 0.00 0.00 0.00 2.17
570 571 8.328758 TGGTTGATAAGTATGAGACCTGAATTT 58.671 33.333 0.00 0.00 0.00 1.82
571 572 8.616076 GGTTGATAAGTATGAGACCTGAATTTG 58.384 37.037 0.00 0.00 0.00 2.32
572 573 7.792374 TGATAAGTATGAGACCTGAATTTGC 57.208 36.000 0.00 0.00 0.00 3.68
573 574 7.568349 TGATAAGTATGAGACCTGAATTTGCT 58.432 34.615 0.00 0.00 0.00 3.91
574 575 7.496920 TGATAAGTATGAGACCTGAATTTGCTG 59.503 37.037 0.00 0.00 0.00 4.41
575 576 5.171339 AGTATGAGACCTGAATTTGCTGT 57.829 39.130 0.00 0.00 0.00 4.40
576 577 6.299805 AGTATGAGACCTGAATTTGCTGTA 57.700 37.500 0.00 0.00 0.00 2.74
577 578 6.344500 AGTATGAGACCTGAATTTGCTGTAG 58.656 40.000 0.00 0.00 0.00 2.74
578 579 3.338249 TGAGACCTGAATTTGCTGTAGC 58.662 45.455 0.00 0.00 42.50 3.58
579 580 2.680339 GAGACCTGAATTTGCTGTAGCC 59.320 50.000 0.80 0.00 41.18 3.93
580 581 2.040278 AGACCTGAATTTGCTGTAGCCA 59.960 45.455 0.80 0.00 41.18 4.75
581 582 3.019564 GACCTGAATTTGCTGTAGCCAT 58.980 45.455 0.80 0.00 41.18 4.40
582 583 3.019564 ACCTGAATTTGCTGTAGCCATC 58.980 45.455 0.80 0.00 41.18 3.51
583 584 3.285484 CCTGAATTTGCTGTAGCCATCT 58.715 45.455 0.80 0.00 41.18 2.90
584 585 3.698040 CCTGAATTTGCTGTAGCCATCTT 59.302 43.478 0.80 0.00 41.18 2.40
585 586 4.201990 CCTGAATTTGCTGTAGCCATCTTC 60.202 45.833 0.80 1.05 41.18 2.87
586 587 4.592942 TGAATTTGCTGTAGCCATCTTCT 58.407 39.130 0.80 0.00 41.18 2.85
587 588 4.397103 TGAATTTGCTGTAGCCATCTTCTG 59.603 41.667 0.80 0.00 41.18 3.02
588 589 1.742761 TTGCTGTAGCCATCTTCTGC 58.257 50.000 0.80 0.00 41.18 4.26
589 590 0.614812 TGCTGTAGCCATCTTCTGCA 59.385 50.000 0.80 0.00 40.35 4.41
590 591 1.012841 GCTGTAGCCATCTTCTGCAC 58.987 55.000 0.00 0.00 35.62 4.57
591 592 1.661341 CTGTAGCCATCTTCTGCACC 58.339 55.000 0.00 0.00 0.00 5.01
592 593 0.983467 TGTAGCCATCTTCTGCACCA 59.017 50.000 0.00 0.00 0.00 4.17
593 594 1.350684 TGTAGCCATCTTCTGCACCAA 59.649 47.619 0.00 0.00 0.00 3.67
594 595 2.224744 TGTAGCCATCTTCTGCACCAAA 60.225 45.455 0.00 0.00 0.00 3.28
595 596 1.251251 AGCCATCTTCTGCACCAAAC 58.749 50.000 0.00 0.00 0.00 2.93
596 597 1.202976 AGCCATCTTCTGCACCAAACT 60.203 47.619 0.00 0.00 0.00 2.66
597 598 1.615392 GCCATCTTCTGCACCAAACTT 59.385 47.619 0.00 0.00 0.00 2.66
598 599 2.608752 GCCATCTTCTGCACCAAACTTG 60.609 50.000 0.00 0.00 0.00 3.16
615 616 8.934507 CCAAACTTGGTGTTGTTTATCTTTAA 57.065 30.769 0.00 0.00 43.43 1.52
616 617 8.813282 CCAAACTTGGTGTTGTTTATCTTTAAC 58.187 33.333 0.00 0.00 43.43 2.01
617 618 9.360093 CAAACTTGGTGTTGTTTATCTTTAACA 57.640 29.630 0.00 0.00 39.13 2.41
623 624 9.953697 TGGTGTTGTTTATCTTTAACATAACAC 57.046 29.630 12.06 12.06 41.73 3.32
634 635 7.240674 TCTTTAACATAACACTATGCAAAGCG 58.759 34.615 0.00 0.00 38.82 4.68
635 636 6.729391 TTAACATAACACTATGCAAAGCGA 57.271 33.333 0.00 0.00 38.87 4.93
636 637 5.621197 AACATAACACTATGCAAAGCGAA 57.379 34.783 0.00 0.00 38.87 4.70
637 638 5.621197 ACATAACACTATGCAAAGCGAAA 57.379 34.783 0.00 0.00 38.87 3.46
638 639 6.007936 ACATAACACTATGCAAAGCGAAAA 57.992 33.333 0.00 0.00 38.87 2.29
639 640 6.442952 ACATAACACTATGCAAAGCGAAAAA 58.557 32.000 0.00 0.00 38.87 1.94
640 641 7.090173 ACATAACACTATGCAAAGCGAAAAAT 58.910 30.769 0.00 0.00 38.87 1.82
641 642 8.240682 ACATAACACTATGCAAAGCGAAAAATA 58.759 29.630 0.00 0.00 38.87 1.40
642 643 8.736742 CATAACACTATGCAAAGCGAAAAATAG 58.263 33.333 0.00 0.00 0.00 1.73
643 644 5.095490 ACACTATGCAAAGCGAAAAATAGC 58.905 37.500 0.00 0.00 0.00 2.97
644 645 4.500477 CACTATGCAAAGCGAAAAATAGCC 59.500 41.667 0.00 0.00 0.00 3.93
645 646 3.874392 ATGCAAAGCGAAAAATAGCCT 57.126 38.095 0.00 0.00 0.00 4.58
646 647 4.981806 ATGCAAAGCGAAAAATAGCCTA 57.018 36.364 0.00 0.00 0.00 3.93
647 648 4.775058 TGCAAAGCGAAAAATAGCCTAA 57.225 36.364 0.00 0.00 0.00 2.69
648 649 4.481463 TGCAAAGCGAAAAATAGCCTAAC 58.519 39.130 0.00 0.00 0.00 2.34
649 650 4.217550 TGCAAAGCGAAAAATAGCCTAACT 59.782 37.500 0.00 0.00 0.00 2.24
650 651 5.413213 TGCAAAGCGAAAAATAGCCTAACTA 59.587 36.000 0.00 0.00 34.64 2.24
651 652 6.094881 TGCAAAGCGAAAAATAGCCTAACTAT 59.905 34.615 0.00 0.00 43.78 2.12
661 662 5.757850 ATAGCCTAACTATTGCTTTGTGC 57.242 39.130 0.00 0.00 38.50 4.57
662 663 2.420022 AGCCTAACTATTGCTTTGTGCG 59.580 45.455 0.00 0.00 46.63 5.34
663 664 2.161609 GCCTAACTATTGCTTTGTGCGT 59.838 45.455 0.00 0.00 46.63 5.24
664 665 3.365969 GCCTAACTATTGCTTTGTGCGTT 60.366 43.478 0.00 0.00 46.63 4.84
665 666 4.142773 GCCTAACTATTGCTTTGTGCGTTA 60.143 41.667 0.00 0.00 46.63 3.18
666 667 5.448632 GCCTAACTATTGCTTTGTGCGTTAT 60.449 40.000 0.00 0.00 46.63 1.89
667 668 6.238266 GCCTAACTATTGCTTTGTGCGTTATA 60.238 38.462 0.00 0.00 46.63 0.98
668 669 7.123830 CCTAACTATTGCTTTGTGCGTTATAC 58.876 38.462 0.00 0.00 46.63 1.47
669 670 6.489127 AACTATTGCTTTGTGCGTTATACA 57.511 33.333 0.00 0.00 46.63 2.29
670 671 5.864986 ACTATTGCTTTGTGCGTTATACAC 58.135 37.500 0.00 0.00 46.63 2.90
671 672 4.757799 ATTGCTTTGTGCGTTATACACA 57.242 36.364 0.00 0.00 45.90 3.72
672 673 4.757799 TTGCTTTGTGCGTTATACACAT 57.242 36.364 0.00 0.00 46.72 3.21
673 674 4.077063 TGCTTTGTGCGTTATACACATG 57.923 40.909 0.00 0.00 46.72 3.21
674 675 3.120025 TGCTTTGTGCGTTATACACATGG 60.120 43.478 0.00 0.00 46.72 3.66
675 676 3.730662 GCTTTGTGCGTTATACACATGGG 60.731 47.826 0.00 0.00 46.72 4.00
676 677 2.031258 TGTGCGTTATACACATGGGG 57.969 50.000 0.00 0.00 42.88 4.96
677 678 1.279558 TGTGCGTTATACACATGGGGT 59.720 47.619 0.00 0.00 42.88 4.95
678 679 1.937899 GTGCGTTATACACATGGGGTC 59.062 52.381 0.00 0.00 37.96 4.46
679 680 1.214367 GCGTTATACACATGGGGTCG 58.786 55.000 0.00 0.00 0.00 4.79
680 681 1.472026 GCGTTATACACATGGGGTCGT 60.472 52.381 0.00 0.00 0.00 4.34
681 682 2.223782 GCGTTATACACATGGGGTCGTA 60.224 50.000 0.00 0.00 0.00 3.43
682 683 3.635331 CGTTATACACATGGGGTCGTAG 58.365 50.000 0.00 0.00 0.00 3.51
683 684 3.316029 CGTTATACACATGGGGTCGTAGA 59.684 47.826 0.00 0.00 0.00 2.59
684 685 4.022589 CGTTATACACATGGGGTCGTAGAT 60.023 45.833 0.00 0.00 40.67 1.98
685 686 5.227908 GTTATACACATGGGGTCGTAGATG 58.772 45.833 0.00 0.00 40.67 2.90
686 687 0.830648 ACACATGGGGTCGTAGATGG 59.169 55.000 0.00 0.00 40.67 3.51
687 688 0.106708 CACATGGGGTCGTAGATGGG 59.893 60.000 0.00 0.00 40.67 4.00
688 689 1.071471 CATGGGGTCGTAGATGGGC 59.929 63.158 0.00 0.00 40.67 5.36
689 690 1.074471 ATGGGGTCGTAGATGGGCT 60.074 57.895 0.00 0.00 40.67 5.19
690 691 1.410850 ATGGGGTCGTAGATGGGCTG 61.411 60.000 0.00 0.00 40.67 4.85
691 692 2.109181 GGGTCGTAGATGGGCTGC 59.891 66.667 0.00 0.00 40.67 5.25
692 693 2.435693 GGGTCGTAGATGGGCTGCT 61.436 63.158 0.00 0.00 40.67 4.24
693 694 1.068250 GGTCGTAGATGGGCTGCTC 59.932 63.158 0.00 0.00 40.67 4.26
694 695 1.395826 GGTCGTAGATGGGCTGCTCT 61.396 60.000 0.00 0.00 40.67 4.09
695 696 0.031449 GTCGTAGATGGGCTGCTCTC 59.969 60.000 0.00 0.00 40.67 3.20
696 697 1.109920 TCGTAGATGGGCTGCTCTCC 61.110 60.000 0.00 0.00 0.00 3.71
893 903 1.673920 GGAAACGCACAGGAAACAGAA 59.326 47.619 0.00 0.00 0.00 3.02
1333 1409 6.439675 AGATCTACTTCTACTTGTTCGTCC 57.560 41.667 0.00 0.00 0.00 4.79
1681 2070 6.922247 TCAGAGAAGTAACTATACTCACGG 57.078 41.667 0.00 0.00 41.57 4.94
2007 2438 3.589988 GATCGTGACAGAAAGATGGTGT 58.410 45.455 0.00 0.00 0.00 4.16
2612 3045 1.348036 GGTTACCAGCACCAAGAGAGT 59.652 52.381 0.00 0.00 34.04 3.24
2786 3219 2.771943 AGGGTCTTTCGATGGCAGATAA 59.228 45.455 0.00 0.00 0.00 1.75
3242 3711 7.253905 AGTGGAGTACAGTACAACCAAATAT 57.746 36.000 22.74 11.98 38.42 1.28
3535 4005 7.063426 ACTGTATCAACTTGTGTGTCAATATCG 59.937 37.037 0.00 0.00 35.35 2.92
3585 4055 2.558359 ACCTTGCTTTCAGTATGCCAAC 59.442 45.455 0.00 0.00 34.76 3.77
3594 4064 6.424812 GCTTTCAGTATGCCAACAATTCTTTT 59.575 34.615 0.00 0.00 34.76 2.27
3605 4075 7.282675 TGCCAACAATTCTTTTGACATGATTTT 59.717 29.630 0.00 0.00 0.00 1.82
3759 4229 7.339466 ACCCGCATCTACAAGATAAAATTTTCT 59.661 33.333 6.72 0.00 32.12 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.617308 CAGACATCTTGGCAGCTAATGG 59.383 50.000 0.00 0.00 0.00 3.16
5 6 3.641434 ACAGACATCTTGGCAGCTAAT 57.359 42.857 0.00 0.00 0.00 1.73
6 7 3.369471 GGTACAGACATCTTGGCAGCTAA 60.369 47.826 0.00 0.00 0.00 3.09
7 8 2.168521 GGTACAGACATCTTGGCAGCTA 59.831 50.000 0.00 0.00 0.00 3.32
8 9 1.065854 GGTACAGACATCTTGGCAGCT 60.066 52.381 0.00 0.00 0.00 4.24
9 10 1.373570 GGTACAGACATCTTGGCAGC 58.626 55.000 0.00 0.00 0.00 5.25
10 11 1.556911 AGGGTACAGACATCTTGGCAG 59.443 52.381 0.00 0.00 0.00 4.85
11 12 1.656587 AGGGTACAGACATCTTGGCA 58.343 50.000 0.00 0.00 0.00 4.92
12 13 2.027192 TCAAGGGTACAGACATCTTGGC 60.027 50.000 0.00 0.00 38.17 4.52
13 14 3.981071 TCAAGGGTACAGACATCTTGG 57.019 47.619 0.00 0.00 38.17 3.61
14 15 6.227298 ACTATCAAGGGTACAGACATCTTG 57.773 41.667 0.00 0.00 38.58 3.02
15 16 7.070074 CCTTACTATCAAGGGTACAGACATCTT 59.930 40.741 0.00 0.00 41.30 2.40
16 17 6.551601 CCTTACTATCAAGGGTACAGACATCT 59.448 42.308 0.00 0.00 41.30 2.90
17 18 6.739008 GCCTTACTATCAAGGGTACAGACATC 60.739 46.154 4.18 0.00 44.56 3.06
18 19 5.070580 GCCTTACTATCAAGGGTACAGACAT 59.929 44.000 4.18 0.00 44.56 3.06
19 20 4.404715 GCCTTACTATCAAGGGTACAGACA 59.595 45.833 4.18 0.00 44.56 3.41
20 21 4.946445 GCCTTACTATCAAGGGTACAGAC 58.054 47.826 4.18 0.00 44.56 3.51
27 28 4.346418 ACTCATCAGCCTTACTATCAAGGG 59.654 45.833 4.18 0.00 44.56 3.95
28 29 5.543507 ACTCATCAGCCTTACTATCAAGG 57.456 43.478 0.00 0.00 46.74 3.61
29 30 6.344500 ACAACTCATCAGCCTTACTATCAAG 58.656 40.000 0.00 0.00 0.00 3.02
30 31 6.299805 ACAACTCATCAGCCTTACTATCAA 57.700 37.500 0.00 0.00 0.00 2.57
31 32 5.939764 ACAACTCATCAGCCTTACTATCA 57.060 39.130 0.00 0.00 0.00 2.15
34 35 9.368416 AGATATAACAACTCATCAGCCTTACTA 57.632 33.333 0.00 0.00 0.00 1.82
35 36 8.147058 CAGATATAACAACTCATCAGCCTTACT 58.853 37.037 0.00 0.00 0.00 2.24
36 37 8.144478 TCAGATATAACAACTCATCAGCCTTAC 58.856 37.037 0.00 0.00 0.00 2.34
37 38 8.250143 TCAGATATAACAACTCATCAGCCTTA 57.750 34.615 0.00 0.00 0.00 2.69
38 39 7.129457 TCAGATATAACAACTCATCAGCCTT 57.871 36.000 0.00 0.00 0.00 4.35
39 40 6.737720 TCAGATATAACAACTCATCAGCCT 57.262 37.500 0.00 0.00 0.00 4.58
40 41 6.933521 ACATCAGATATAACAACTCATCAGCC 59.066 38.462 0.00 0.00 0.00 4.85
41 42 7.440556 ACACATCAGATATAACAACTCATCAGC 59.559 37.037 0.00 0.00 0.00 4.26
42 43 8.883954 ACACATCAGATATAACAACTCATCAG 57.116 34.615 0.00 0.00 0.00 2.90
55 56 9.716531 CAACAAGGATACATACACATCAGATAT 57.283 33.333 0.00 0.00 41.41 1.63
56 57 7.657354 GCAACAAGGATACATACACATCAGATA 59.343 37.037 0.00 0.00 41.41 1.98
57 58 6.484643 GCAACAAGGATACATACACATCAGAT 59.515 38.462 0.00 0.00 41.41 2.90
58 59 5.817296 GCAACAAGGATACATACACATCAGA 59.183 40.000 0.00 0.00 41.41 3.27
59 60 5.819379 AGCAACAAGGATACATACACATCAG 59.181 40.000 0.00 0.00 41.41 2.90
60 61 5.585844 CAGCAACAAGGATACATACACATCA 59.414 40.000 0.00 0.00 41.41 3.07
61 62 5.008019 CCAGCAACAAGGATACATACACATC 59.992 44.000 0.00 0.00 41.41 3.06
62 63 4.883585 CCAGCAACAAGGATACATACACAT 59.116 41.667 0.00 0.00 41.41 3.21
63 64 4.260985 CCAGCAACAAGGATACATACACA 58.739 43.478 0.00 0.00 41.41 3.72
64 65 4.261801 ACCAGCAACAAGGATACATACAC 58.738 43.478 0.00 0.00 41.41 2.90
65 66 4.568072 ACCAGCAACAAGGATACATACA 57.432 40.909 0.00 0.00 41.41 2.29
66 67 4.511826 GCTACCAGCAACAAGGATACATAC 59.488 45.833 0.00 0.00 41.89 2.39
67 68 4.408921 AGCTACCAGCAACAAGGATACATA 59.591 41.667 0.38 0.00 45.56 2.29
68 69 3.200825 AGCTACCAGCAACAAGGATACAT 59.799 43.478 0.38 0.00 45.56 2.29
69 70 2.571653 AGCTACCAGCAACAAGGATACA 59.428 45.455 0.38 0.00 45.56 2.29
70 71 3.268023 AGCTACCAGCAACAAGGATAC 57.732 47.619 0.38 0.00 45.56 2.24
71 72 3.263170 TGAAGCTACCAGCAACAAGGATA 59.737 43.478 0.38 0.00 45.56 2.59
72 73 2.040278 TGAAGCTACCAGCAACAAGGAT 59.960 45.455 0.38 0.00 45.56 3.24
73 74 1.419762 TGAAGCTACCAGCAACAAGGA 59.580 47.619 0.38 0.00 45.56 3.36
74 75 1.896220 TGAAGCTACCAGCAACAAGG 58.104 50.000 0.38 0.00 45.56 3.61
75 76 3.119708 GGATTGAAGCTACCAGCAACAAG 60.120 47.826 12.67 0.00 45.56 3.16
76 77 2.819608 GGATTGAAGCTACCAGCAACAA 59.180 45.455 0.38 6.70 45.56 2.83
77 78 2.436417 GGATTGAAGCTACCAGCAACA 58.564 47.619 0.38 0.00 45.56 3.33
78 79 1.745653 GGGATTGAAGCTACCAGCAAC 59.254 52.381 0.38 0.00 45.56 4.17
79 80 1.354031 TGGGATTGAAGCTACCAGCAA 59.646 47.619 0.38 0.00 45.56 3.91
80 81 0.991146 TGGGATTGAAGCTACCAGCA 59.009 50.000 0.38 0.00 45.56 4.41
81 82 2.158696 AGATGGGATTGAAGCTACCAGC 60.159 50.000 0.00 0.00 42.84 4.85
82 83 3.390639 AGAGATGGGATTGAAGCTACCAG 59.609 47.826 0.00 0.00 34.23 4.00
83 84 3.387962 AGAGATGGGATTGAAGCTACCA 58.612 45.455 0.00 0.00 35.39 3.25
84 85 3.645687 AGAGAGATGGGATTGAAGCTACC 59.354 47.826 0.00 0.00 0.00 3.18
85 86 4.588528 AGAGAGAGATGGGATTGAAGCTAC 59.411 45.833 0.00 0.00 0.00 3.58
86 87 4.813809 AGAGAGAGATGGGATTGAAGCTA 58.186 43.478 0.00 0.00 0.00 3.32
87 88 3.642848 GAGAGAGAGATGGGATTGAAGCT 59.357 47.826 0.00 0.00 0.00 3.74
88 89 3.642848 AGAGAGAGAGATGGGATTGAAGC 59.357 47.826 0.00 0.00 0.00 3.86
89 90 5.142639 AGAGAGAGAGAGATGGGATTGAAG 58.857 45.833 0.00 0.00 0.00 3.02
90 91 5.103558 AGAGAGAGAGAGAGATGGGATTGAA 60.104 44.000 0.00 0.00 0.00 2.69
91 92 4.416513 AGAGAGAGAGAGAGATGGGATTGA 59.583 45.833 0.00 0.00 0.00 2.57
92 93 4.733165 AGAGAGAGAGAGAGATGGGATTG 58.267 47.826 0.00 0.00 0.00 2.67
93 94 4.666907 AGAGAGAGAGAGAGAGATGGGATT 59.333 45.833 0.00 0.00 0.00 3.01
94 95 4.246143 AGAGAGAGAGAGAGAGATGGGAT 58.754 47.826 0.00 0.00 0.00 3.85
95 96 3.648067 GAGAGAGAGAGAGAGAGATGGGA 59.352 52.174 0.00 0.00 0.00 4.37
96 97 3.649981 AGAGAGAGAGAGAGAGAGATGGG 59.350 52.174 0.00 0.00 0.00 4.00
97 98 4.592351 AGAGAGAGAGAGAGAGAGAGATGG 59.408 50.000 0.00 0.00 0.00 3.51
98 99 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
99 100 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
100 101 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
101 102 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
102 103 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
103 104 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
104 105 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
105 106 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
106 107 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
107 108 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
108 109 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
109 110 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
110 111 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
111 112 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
112 113 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
113 114 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
114 115 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
115 116 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
116 117 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
117 118 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
118 119 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
479 480 7.065120 AGAAGTATTTCTATCAGCAGCTCAT 57.935 36.000 0.00 0.00 41.82 2.90
480 481 6.477053 AGAAGTATTTCTATCAGCAGCTCA 57.523 37.500 0.00 0.00 41.82 4.26
481 482 6.202570 CCAAGAAGTATTTCTATCAGCAGCTC 59.797 42.308 0.32 0.00 42.80 4.09
482 483 6.054295 CCAAGAAGTATTTCTATCAGCAGCT 58.946 40.000 0.32 0.00 42.80 4.24
483 484 6.051717 TCCAAGAAGTATTTCTATCAGCAGC 58.948 40.000 0.32 0.00 42.80 5.25
484 485 6.202570 GCTCCAAGAAGTATTTCTATCAGCAG 59.797 42.308 14.85 3.94 42.80 4.24
485 486 6.051717 GCTCCAAGAAGTATTTCTATCAGCA 58.948 40.000 14.85 0.00 42.80 4.41
486 487 6.287525 AGCTCCAAGAAGTATTTCTATCAGC 58.712 40.000 13.09 13.09 42.80 4.26
487 488 8.729805 AAAGCTCCAAGAAGTATTTCTATCAG 57.270 34.615 0.32 0.00 42.80 2.90
488 489 9.601217 GTAAAGCTCCAAGAAGTATTTCTATCA 57.399 33.333 0.32 0.00 42.80 2.15
489 490 9.825109 AGTAAAGCTCCAAGAAGTATTTCTATC 57.175 33.333 0.32 0.00 42.80 2.08
496 497 9.740710 ACATTTAAGTAAAGCTCCAAGAAGTAT 57.259 29.630 0.00 0.00 0.00 2.12
497 498 9.569122 AACATTTAAGTAAAGCTCCAAGAAGTA 57.431 29.630 0.00 0.00 0.00 2.24
498 499 8.465273 AACATTTAAGTAAAGCTCCAAGAAGT 57.535 30.769 0.00 0.00 0.00 3.01
499 500 9.750125 AAAACATTTAAGTAAAGCTCCAAGAAG 57.250 29.630 0.00 0.00 0.00 2.85
501 502 9.528018 CAAAAACATTTAAGTAAAGCTCCAAGA 57.472 29.630 0.00 0.00 0.00 3.02
502 503 9.528018 TCAAAAACATTTAAGTAAAGCTCCAAG 57.472 29.630 0.00 0.00 0.00 3.61
503 504 9.528018 CTCAAAAACATTTAAGTAAAGCTCCAA 57.472 29.630 0.00 0.00 0.00 3.53
504 505 8.908903 TCTCAAAAACATTTAAGTAAAGCTCCA 58.091 29.630 0.00 0.00 0.00 3.86
505 506 9.399403 CTCTCAAAAACATTTAAGTAAAGCTCC 57.601 33.333 0.00 0.00 0.00 4.70
517 518 8.882736 GGAAACAAACATCTCTCAAAAACATTT 58.117 29.630 0.00 0.00 0.00 2.32
518 519 8.260114 AGGAAACAAACATCTCTCAAAAACATT 58.740 29.630 0.00 0.00 0.00 2.71
519 520 7.707893 CAGGAAACAAACATCTCTCAAAAACAT 59.292 33.333 0.00 0.00 0.00 2.71
520 521 7.035004 CAGGAAACAAACATCTCTCAAAAACA 58.965 34.615 0.00 0.00 0.00 2.83
521 522 6.476706 CCAGGAAACAAACATCTCTCAAAAAC 59.523 38.462 0.00 0.00 0.00 2.43
522 523 6.154363 ACCAGGAAACAAACATCTCTCAAAAA 59.846 34.615 0.00 0.00 0.00 1.94
523 524 5.656416 ACCAGGAAACAAACATCTCTCAAAA 59.344 36.000 0.00 0.00 0.00 2.44
524 525 5.200483 ACCAGGAAACAAACATCTCTCAAA 58.800 37.500 0.00 0.00 0.00 2.69
525 526 4.792068 ACCAGGAAACAAACATCTCTCAA 58.208 39.130 0.00 0.00 0.00 3.02
526 527 4.437682 ACCAGGAAACAAACATCTCTCA 57.562 40.909 0.00 0.00 0.00 3.27
527 528 4.821805 TCAACCAGGAAACAAACATCTCTC 59.178 41.667 0.00 0.00 0.00 3.20
528 529 4.792068 TCAACCAGGAAACAAACATCTCT 58.208 39.130 0.00 0.00 0.00 3.10
529 530 5.712152 ATCAACCAGGAAACAAACATCTC 57.288 39.130 0.00 0.00 0.00 2.75
530 531 6.777580 ACTTATCAACCAGGAAACAAACATCT 59.222 34.615 0.00 0.00 0.00 2.90
531 532 6.981722 ACTTATCAACCAGGAAACAAACATC 58.018 36.000 0.00 0.00 0.00 3.06
532 533 6.976934 ACTTATCAACCAGGAAACAAACAT 57.023 33.333 0.00 0.00 0.00 2.71
533 534 7.721842 TCATACTTATCAACCAGGAAACAAACA 59.278 33.333 0.00 0.00 0.00 2.83
534 535 8.106247 TCATACTTATCAACCAGGAAACAAAC 57.894 34.615 0.00 0.00 0.00 2.93
535 536 8.160765 TCTCATACTTATCAACCAGGAAACAAA 58.839 33.333 0.00 0.00 0.00 2.83
536 537 7.606456 GTCTCATACTTATCAACCAGGAAACAA 59.394 37.037 0.00 0.00 0.00 2.83
537 538 7.103641 GTCTCATACTTATCAACCAGGAAACA 58.896 38.462 0.00 0.00 0.00 2.83
538 539 6.539103 GGTCTCATACTTATCAACCAGGAAAC 59.461 42.308 0.00 0.00 0.00 2.78
539 540 6.443849 AGGTCTCATACTTATCAACCAGGAAA 59.556 38.462 0.00 0.00 0.00 3.13
540 541 5.964477 AGGTCTCATACTTATCAACCAGGAA 59.036 40.000 0.00 0.00 0.00 3.36
541 542 5.363868 CAGGTCTCATACTTATCAACCAGGA 59.636 44.000 0.00 0.00 0.00 3.86
542 543 5.363868 TCAGGTCTCATACTTATCAACCAGG 59.636 44.000 0.00 0.00 0.00 4.45
543 544 6.471233 TCAGGTCTCATACTTATCAACCAG 57.529 41.667 0.00 0.00 0.00 4.00
544 545 6.867519 TTCAGGTCTCATACTTATCAACCA 57.132 37.500 0.00 0.00 0.00 3.67
545 546 8.616076 CAAATTCAGGTCTCATACTTATCAACC 58.384 37.037 0.00 0.00 0.00 3.77
546 547 8.125448 GCAAATTCAGGTCTCATACTTATCAAC 58.875 37.037 0.00 0.00 0.00 3.18
547 548 8.049117 AGCAAATTCAGGTCTCATACTTATCAA 58.951 33.333 0.00 0.00 0.00 2.57
548 549 7.496920 CAGCAAATTCAGGTCTCATACTTATCA 59.503 37.037 0.00 0.00 0.00 2.15
549 550 7.497249 ACAGCAAATTCAGGTCTCATACTTATC 59.503 37.037 0.00 0.00 0.00 1.75
550 551 7.341805 ACAGCAAATTCAGGTCTCATACTTAT 58.658 34.615 0.00 0.00 0.00 1.73
551 552 6.711277 ACAGCAAATTCAGGTCTCATACTTA 58.289 36.000 0.00 0.00 0.00 2.24
552 553 5.564550 ACAGCAAATTCAGGTCTCATACTT 58.435 37.500 0.00 0.00 0.00 2.24
553 554 5.171339 ACAGCAAATTCAGGTCTCATACT 57.829 39.130 0.00 0.00 0.00 2.12
554 555 5.007136 GCTACAGCAAATTCAGGTCTCATAC 59.993 44.000 0.00 0.00 41.59 2.39
555 556 5.118990 GCTACAGCAAATTCAGGTCTCATA 58.881 41.667 0.00 0.00 41.59 2.15
556 557 3.944015 GCTACAGCAAATTCAGGTCTCAT 59.056 43.478 0.00 0.00 41.59 2.90
557 558 3.338249 GCTACAGCAAATTCAGGTCTCA 58.662 45.455 0.00 0.00 41.59 3.27
558 559 2.680339 GGCTACAGCAAATTCAGGTCTC 59.320 50.000 3.24 0.00 44.36 3.36
559 560 2.040278 TGGCTACAGCAAATTCAGGTCT 59.960 45.455 3.24 0.00 44.36 3.85
560 561 2.436417 TGGCTACAGCAAATTCAGGTC 58.564 47.619 3.24 0.00 44.36 3.85
561 562 2.584835 TGGCTACAGCAAATTCAGGT 57.415 45.000 3.24 0.00 44.36 4.00
562 563 3.285484 AGATGGCTACAGCAAATTCAGG 58.715 45.455 3.24 0.00 44.36 3.86
563 564 4.639310 AGAAGATGGCTACAGCAAATTCAG 59.361 41.667 3.24 0.00 44.36 3.02
564 565 4.397103 CAGAAGATGGCTACAGCAAATTCA 59.603 41.667 3.24 0.00 44.36 2.57
565 566 4.732938 GCAGAAGATGGCTACAGCAAATTC 60.733 45.833 3.24 1.75 44.36 2.17
566 567 3.129988 GCAGAAGATGGCTACAGCAAATT 59.870 43.478 3.24 0.00 44.36 1.82
567 568 2.686915 GCAGAAGATGGCTACAGCAAAT 59.313 45.455 3.24 0.00 44.36 2.32
568 569 2.086869 GCAGAAGATGGCTACAGCAAA 58.913 47.619 3.24 0.00 44.36 3.68
569 570 1.003464 TGCAGAAGATGGCTACAGCAA 59.997 47.619 3.24 0.00 44.36 3.91
570 571 0.614812 TGCAGAAGATGGCTACAGCA 59.385 50.000 3.24 0.00 44.36 4.41
571 572 1.012841 GTGCAGAAGATGGCTACAGC 58.987 55.000 0.00 0.00 41.14 4.40
572 573 1.065926 TGGTGCAGAAGATGGCTACAG 60.066 52.381 0.00 0.00 0.00 2.74
573 574 0.983467 TGGTGCAGAAGATGGCTACA 59.017 50.000 0.00 0.00 0.00 2.74
574 575 2.113860 TTGGTGCAGAAGATGGCTAC 57.886 50.000 0.00 0.00 0.00 3.58
575 576 2.040278 AGTTTGGTGCAGAAGATGGCTA 59.960 45.455 0.00 0.00 0.00 3.93
576 577 1.202976 AGTTTGGTGCAGAAGATGGCT 60.203 47.619 0.00 0.00 0.00 4.75
577 578 1.251251 AGTTTGGTGCAGAAGATGGC 58.749 50.000 0.00 0.00 0.00 4.40
578 579 2.029649 CCAAGTTTGGTGCAGAAGATGG 60.030 50.000 2.66 0.00 43.43 3.51
579 580 3.293311 CCAAGTTTGGTGCAGAAGATG 57.707 47.619 2.66 0.00 43.43 2.90
591 592 9.360093 TGTTAAAGATAAACAACACCAAGTTTG 57.640 29.630 0.00 0.00 38.74 2.93
597 598 9.953697 GTGTTATGTTAAAGATAAACAACACCA 57.046 29.630 10.60 0.00 39.95 4.17
608 609 7.910162 CGCTTTGCATAGTGTTATGTTAAAGAT 59.090 33.333 19.04 0.00 40.79 2.40
609 610 7.118535 TCGCTTTGCATAGTGTTATGTTAAAGA 59.881 33.333 15.87 0.00 40.79 2.52
610 611 7.240674 TCGCTTTGCATAGTGTTATGTTAAAG 58.759 34.615 15.87 14.75 40.97 1.85
611 612 7.135089 TCGCTTTGCATAGTGTTATGTTAAA 57.865 32.000 15.87 0.00 39.12 1.52
612 613 6.729391 TCGCTTTGCATAGTGTTATGTTAA 57.271 33.333 15.87 0.00 39.12 2.01
613 614 6.729391 TTCGCTTTGCATAGTGTTATGTTA 57.271 33.333 15.87 0.00 39.12 2.41
614 615 5.621197 TTCGCTTTGCATAGTGTTATGTT 57.379 34.783 15.87 0.00 39.12 2.71
615 616 5.621197 TTTCGCTTTGCATAGTGTTATGT 57.379 34.783 15.87 0.00 39.12 2.29
616 617 6.926280 TTTTTCGCTTTGCATAGTGTTATG 57.074 33.333 15.87 0.00 39.75 1.90
617 618 7.432252 GCTATTTTTCGCTTTGCATAGTGTTAT 59.568 33.333 15.87 8.80 0.00 1.89
618 619 6.745450 GCTATTTTTCGCTTTGCATAGTGTTA 59.255 34.615 15.87 4.82 0.00 2.41
619 620 5.572896 GCTATTTTTCGCTTTGCATAGTGTT 59.427 36.000 15.87 2.69 0.00 3.32
620 621 5.095490 GCTATTTTTCGCTTTGCATAGTGT 58.905 37.500 15.87 1.18 0.00 3.55
621 622 4.500477 GGCTATTTTTCGCTTTGCATAGTG 59.500 41.667 11.04 11.04 0.00 2.74
622 623 4.399303 AGGCTATTTTTCGCTTTGCATAGT 59.601 37.500 6.03 0.00 0.00 2.12
623 624 4.925068 AGGCTATTTTTCGCTTTGCATAG 58.075 39.130 0.00 0.00 0.00 2.23
624 625 4.981806 AGGCTATTTTTCGCTTTGCATA 57.018 36.364 0.00 0.00 0.00 3.14
625 626 3.874392 AGGCTATTTTTCGCTTTGCAT 57.126 38.095 0.00 0.00 0.00 3.96
626 627 4.217550 AGTTAGGCTATTTTTCGCTTTGCA 59.782 37.500 0.00 0.00 0.00 4.08
627 628 4.733850 AGTTAGGCTATTTTTCGCTTTGC 58.266 39.130 0.00 0.00 0.00 3.68
628 629 7.044052 GCAATAGTTAGGCTATTTTTCGCTTTG 60.044 37.037 0.00 0.00 45.40 2.77
629 630 6.972901 GCAATAGTTAGGCTATTTTTCGCTTT 59.027 34.615 0.00 0.00 45.40 3.51
630 631 6.318900 AGCAATAGTTAGGCTATTTTTCGCTT 59.681 34.615 0.00 0.00 45.40 4.68
631 632 5.823045 AGCAATAGTTAGGCTATTTTTCGCT 59.177 36.000 0.00 0.00 45.40 4.93
632 633 6.061231 AGCAATAGTTAGGCTATTTTTCGC 57.939 37.500 0.00 0.00 45.40 4.70
633 634 7.968405 ACAAAGCAATAGTTAGGCTATTTTTCG 59.032 33.333 0.00 0.00 45.40 3.46
634 635 9.076596 CACAAAGCAATAGTTAGGCTATTTTTC 57.923 33.333 0.00 0.00 45.40 2.29
635 636 7.545615 GCACAAAGCAATAGTTAGGCTATTTTT 59.454 33.333 0.00 0.00 45.40 1.94
636 637 7.035612 GCACAAAGCAATAGTTAGGCTATTTT 58.964 34.615 0.00 0.00 45.40 1.82
637 638 6.564328 GCACAAAGCAATAGTTAGGCTATTT 58.436 36.000 0.00 0.00 45.40 1.40
639 640 4.273480 CGCACAAAGCAATAGTTAGGCTAT 59.727 41.667 0.00 0.00 46.13 2.97
640 641 3.621268 CGCACAAAGCAATAGTTAGGCTA 59.379 43.478 0.00 0.00 46.13 3.93
641 642 2.420022 CGCACAAAGCAATAGTTAGGCT 59.580 45.455 0.00 0.00 46.13 4.58
642 643 2.161609 ACGCACAAAGCAATAGTTAGGC 59.838 45.455 0.00 0.00 46.13 3.93
643 644 4.419522 AACGCACAAAGCAATAGTTAGG 57.580 40.909 0.00 0.00 46.13 2.69
644 645 7.634817 GTGTATAACGCACAAAGCAATAGTTAG 59.365 37.037 0.00 0.00 46.13 2.34
645 646 7.117956 TGTGTATAACGCACAAAGCAATAGTTA 59.882 33.333 0.00 0.00 46.13 2.24
646 647 6.072948 TGTGTATAACGCACAAAGCAATAGTT 60.073 34.615 0.00 0.00 46.13 2.24
647 648 5.410132 TGTGTATAACGCACAAAGCAATAGT 59.590 36.000 0.00 0.00 46.13 2.12
648 649 5.863898 TGTGTATAACGCACAAAGCAATAG 58.136 37.500 0.00 0.00 46.13 1.73
649 650 5.864628 TGTGTATAACGCACAAAGCAATA 57.135 34.783 0.00 0.00 46.13 1.90
650 651 4.757799 TGTGTATAACGCACAAAGCAAT 57.242 36.364 0.00 0.00 46.13 3.56
658 659 1.937899 GACCCCATGTGTATAACGCAC 59.062 52.381 0.00 0.00 41.87 5.34
659 660 1.471851 CGACCCCATGTGTATAACGCA 60.472 52.381 0.00 0.00 43.36 5.24
660 661 1.214367 CGACCCCATGTGTATAACGC 58.786 55.000 0.00 0.00 0.00 4.84
661 662 2.589798 ACGACCCCATGTGTATAACG 57.410 50.000 0.00 0.00 0.00 3.18
662 663 4.924305 TCTACGACCCCATGTGTATAAC 57.076 45.455 0.00 0.00 0.00 1.89
663 664 4.282449 CCATCTACGACCCCATGTGTATAA 59.718 45.833 0.00 0.00 0.00 0.98
664 665 3.830178 CCATCTACGACCCCATGTGTATA 59.170 47.826 0.00 0.00 0.00 1.47
665 666 2.632996 CCATCTACGACCCCATGTGTAT 59.367 50.000 0.00 0.00 0.00 2.29
666 667 2.036387 CCATCTACGACCCCATGTGTA 58.964 52.381 0.00 0.00 0.00 2.90
667 668 0.830648 CCATCTACGACCCCATGTGT 59.169 55.000 0.00 0.00 0.00 3.72
668 669 0.106708 CCCATCTACGACCCCATGTG 59.893 60.000 0.00 0.00 0.00 3.21
669 670 1.696097 GCCCATCTACGACCCCATGT 61.696 60.000 0.00 0.00 0.00 3.21
670 671 1.071471 GCCCATCTACGACCCCATG 59.929 63.158 0.00 0.00 0.00 3.66
671 672 1.074471 AGCCCATCTACGACCCCAT 60.074 57.895 0.00 0.00 0.00 4.00
672 673 2.063979 CAGCCCATCTACGACCCCA 61.064 63.158 0.00 0.00 0.00 4.96
673 674 2.822399 CAGCCCATCTACGACCCC 59.178 66.667 0.00 0.00 0.00 4.95
674 675 2.109181 GCAGCCCATCTACGACCC 59.891 66.667 0.00 0.00 0.00 4.46
675 676 1.068250 GAGCAGCCCATCTACGACC 59.932 63.158 0.00 0.00 0.00 4.79
676 677 0.031449 GAGAGCAGCCCATCTACGAC 59.969 60.000 0.00 0.00 0.00 4.34
677 678 1.109920 GGAGAGCAGCCCATCTACGA 61.110 60.000 0.00 0.00 0.00 3.43
678 679 1.365633 GGAGAGCAGCCCATCTACG 59.634 63.158 0.00 0.00 0.00 3.51
679 680 0.105778 GTGGAGAGCAGCCCATCTAC 59.894 60.000 0.00 0.00 34.58 2.59
680 681 0.031716 AGTGGAGAGCAGCCCATCTA 60.032 55.000 0.00 0.00 34.58 1.98
681 682 1.306825 AGTGGAGAGCAGCCCATCT 60.307 57.895 0.00 0.00 34.58 2.90
682 683 1.153208 CAGTGGAGAGCAGCCCATC 60.153 63.158 0.00 0.00 34.58 3.51
683 684 0.618680 TACAGTGGAGAGCAGCCCAT 60.619 55.000 0.00 0.00 34.58 4.00
684 685 0.835971 TTACAGTGGAGAGCAGCCCA 60.836 55.000 0.00 0.00 0.00 5.36
685 686 0.107945 CTTACAGTGGAGAGCAGCCC 60.108 60.000 0.00 0.00 0.00 5.19
686 687 0.107945 CCTTACAGTGGAGAGCAGCC 60.108 60.000 0.00 0.00 0.00 4.85
687 688 0.742635 GCCTTACAGTGGAGAGCAGC 60.743 60.000 0.00 0.00 0.00 5.25
688 689 0.107945 GGCCTTACAGTGGAGAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
689 690 0.835971 TGGCCTTACAGTGGAGAGCA 60.836 55.000 3.32 0.00 0.00 4.26
690 691 0.543749 ATGGCCTTACAGTGGAGAGC 59.456 55.000 3.32 0.00 0.00 4.09
691 692 1.556911 ACATGGCCTTACAGTGGAGAG 59.443 52.381 3.32 0.00 0.00 3.20
692 693 1.656587 ACATGGCCTTACAGTGGAGA 58.343 50.000 3.32 0.00 0.00 3.71
693 694 2.359900 GAACATGGCCTTACAGTGGAG 58.640 52.381 3.32 0.00 0.00 3.86
694 695 1.338674 CGAACATGGCCTTACAGTGGA 60.339 52.381 3.32 0.00 0.00 4.02
695 696 1.086696 CGAACATGGCCTTACAGTGG 58.913 55.000 3.32 0.00 0.00 4.00
696 697 1.086696 CCGAACATGGCCTTACAGTG 58.913 55.000 3.32 0.00 0.00 3.66
893 903 4.176752 GAAAGGAGGGGCGGCGAT 62.177 66.667 12.98 0.00 0.00 4.58
1333 1409 8.412456 CAGCACTTCCTCCTAGTATATATCATG 58.588 40.741 0.00 0.00 0.00 3.07
1536 1916 5.784578 TCTCTTTACTACAAGCACACAGA 57.215 39.130 0.00 0.00 0.00 3.41
1681 2070 6.673839 ATTAGGGCTCCAGAAAGTAGATAC 57.326 41.667 0.00 0.00 0.00 2.24
2007 2438 0.453793 CAAACATTATCGGGCGCCAA 59.546 50.000 30.85 16.79 0.00 4.52
2612 3045 2.872245 CTGGTCGTCTTTTGCTTTCTCA 59.128 45.455 0.00 0.00 0.00 3.27
2786 3219 1.065854 AGATGTCCGCTGCTTTTAGCT 60.066 47.619 0.00 0.00 42.97 3.32
3535 4005 6.238484 CCATACTAAAGGCAGCTACAATGTTC 60.238 42.308 0.00 0.00 0.00 3.18
3594 4064 6.207221 ACATGCTCAACTACAAAATCATGTCA 59.793 34.615 0.00 0.00 38.96 3.58
3605 4075 2.299013 ACCTTCGACATGCTCAACTACA 59.701 45.455 0.00 0.00 0.00 2.74
3759 4229 3.135712 ACATGGATTCAATGTACCGCCTA 59.864 43.478 4.80 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.