Multiple sequence alignment - TraesCS6A01G009400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G009400 chr6A 100.000 3332 0 0 1 3332 3912019 3915350 0.000000e+00 6154.0
1 TraesCS6A01G009400 chr6A 86.719 128 14 2 1264 1388 18931236 18931363 4.480000e-29 139.0
2 TraesCS6A01G009400 chr6D 94.824 2241 104 8 516 2750 4838271 4840505 0.000000e+00 3485.0
3 TraesCS6A01G009400 chr6D 97.059 374 11 0 2959 3332 4840848 4841221 6.070000e-177 630.0
4 TraesCS6A01G009400 chr6D 92.228 193 8 2 2747 2939 4840673 4840858 1.970000e-67 267.0
5 TraesCS6A01G009400 chr6B 89.193 2554 186 45 238 2748 8903105 8900599 0.000000e+00 3105.0
6 TraesCS6A01G009400 chr6B 88.893 2449 193 37 238 2656 9168922 9171321 0.000000e+00 2942.0
7 TraesCS6A01G009400 chr6B 93.624 298 12 6 2362 2656 8873028 8872735 3.950000e-119 438.0
8 TraesCS6A01G009400 chr6B 86.577 149 14 2 2747 2895 8900428 8900286 3.440000e-35 159.0
9 TraesCS6A01G009400 chr6B 97.500 40 1 0 2894 2933 8890797 8890758 5.960000e-08 69.4
10 TraesCS6A01G009400 chr5B 80.181 1105 171 29 1268 2335 13497960 13496867 0.000000e+00 784.0
11 TraesCS6A01G009400 chr5A 82.120 783 132 7 1461 2240 11134592 11133815 0.000000e+00 664.0
12 TraesCS6A01G009400 chr1B 76.820 1264 231 39 1257 2482 21512762 21511523 0.000000e+00 654.0
13 TraesCS6A01G009400 chr5D 81.772 790 130 12 1460 2240 14535660 14534876 0.000000e+00 649.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G009400 chr6A 3912019 3915350 3331 False 6154.000000 6154 100.000000 1 3332 1 chr6A.!!$F1 3331
1 TraesCS6A01G009400 chr6D 4838271 4841221 2950 False 1460.666667 3485 94.703667 516 3332 3 chr6D.!!$F1 2816
2 TraesCS6A01G009400 chr6B 9168922 9171321 2399 False 2942.000000 2942 88.893000 238 2656 1 chr6B.!!$F1 2418
3 TraesCS6A01G009400 chr6B 8900286 8903105 2819 True 1632.000000 3105 87.885000 238 2895 2 chr6B.!!$R3 2657
4 TraesCS6A01G009400 chr5B 13496867 13497960 1093 True 784.000000 784 80.181000 1268 2335 1 chr5B.!!$R1 1067
5 TraesCS6A01G009400 chr5A 11133815 11134592 777 True 664.000000 664 82.120000 1461 2240 1 chr5A.!!$R1 779
6 TraesCS6A01G009400 chr1B 21511523 21512762 1239 True 654.000000 654 76.820000 1257 2482 1 chr1B.!!$R1 1225
7 TraesCS6A01G009400 chr5D 14534876 14535660 784 True 649.000000 649 81.772000 1460 2240 1 chr5D.!!$R1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 413 0.039472 TGCATATGGGCCAACACTGT 59.961 50.0 11.89 0.00 0.0 3.55 F
399 414 0.457035 GCATATGGGCCAACACTGTG 59.543 55.0 11.89 6.19 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 2397 1.263484 GCTCTGCATGATCCGTGAATG 59.737 52.381 0.0 0.0 0.0 2.67 R
2370 2478 2.124507 CTCCTCCTTTGGGTGCCGAA 62.125 60.000 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.767711 AGTTCTCCCTCCATTCCAAAAC 58.232 45.455 0.00 0.00 0.00 2.43
22 23 3.140144 AGTTCTCCCTCCATTCCAAAACA 59.860 43.478 0.00 0.00 0.00 2.83
23 24 4.089361 GTTCTCCCTCCATTCCAAAACAT 58.911 43.478 0.00 0.00 0.00 2.71
24 25 3.700538 TCTCCCTCCATTCCAAAACATG 58.299 45.455 0.00 0.00 0.00 3.21
25 26 3.075882 TCTCCCTCCATTCCAAAACATGT 59.924 43.478 0.00 0.00 0.00 3.21
26 27 4.290985 TCTCCCTCCATTCCAAAACATGTA 59.709 41.667 0.00 0.00 0.00 2.29
27 28 5.004361 TCCCTCCATTCCAAAACATGTAA 57.996 39.130 0.00 0.00 0.00 2.41
28 29 5.398236 TCCCTCCATTCCAAAACATGTAAA 58.602 37.500 0.00 0.00 0.00 2.01
29 30 5.841237 TCCCTCCATTCCAAAACATGTAAAA 59.159 36.000 0.00 0.00 0.00 1.52
30 31 5.931724 CCCTCCATTCCAAAACATGTAAAAC 59.068 40.000 0.00 0.00 0.00 2.43
31 32 5.931724 CCTCCATTCCAAAACATGTAAAACC 59.068 40.000 0.00 0.00 0.00 3.27
32 33 6.463614 CCTCCATTCCAAAACATGTAAAACCA 60.464 38.462 0.00 0.00 0.00 3.67
33 34 7.072263 TCCATTCCAAAACATGTAAAACCAT 57.928 32.000 0.00 0.00 0.00 3.55
34 35 6.933521 TCCATTCCAAAACATGTAAAACCATG 59.066 34.615 0.00 0.00 46.14 3.66
35 36 6.149142 CCATTCCAAAACATGTAAAACCATGG 59.851 38.462 11.19 11.19 45.21 3.66
36 37 5.878406 TCCAAAACATGTAAAACCATGGT 57.122 34.783 13.00 13.00 44.50 3.55
37 38 6.978674 TCCAAAACATGTAAAACCATGGTA 57.021 33.333 20.12 1.36 41.83 3.25
38 39 6.750148 TCCAAAACATGTAAAACCATGGTAC 58.250 36.000 20.12 13.75 41.83 3.34
39 40 6.323996 TCCAAAACATGTAAAACCATGGTACA 59.676 34.615 20.12 19.39 41.83 2.90
53 54 3.109044 TGGTACACCGTCGAAATTTGA 57.891 42.857 0.00 0.00 39.43 2.69
54 55 3.464907 TGGTACACCGTCGAAATTTGAA 58.535 40.909 0.00 0.00 39.43 2.69
55 56 3.248125 TGGTACACCGTCGAAATTTGAAC 59.752 43.478 0.00 0.00 39.43 3.18
56 57 3.495753 GGTACACCGTCGAAATTTGAACT 59.504 43.478 0.00 0.00 0.00 3.01
57 58 4.685628 GGTACACCGTCGAAATTTGAACTA 59.314 41.667 0.00 0.00 0.00 2.24
58 59 5.177327 GGTACACCGTCGAAATTTGAACTAA 59.823 40.000 0.00 0.00 0.00 2.24
59 60 5.738118 ACACCGTCGAAATTTGAACTAAA 57.262 34.783 0.00 0.00 0.00 1.85
60 61 6.121613 ACACCGTCGAAATTTGAACTAAAA 57.878 33.333 0.00 0.00 0.00 1.52
61 62 5.967088 ACACCGTCGAAATTTGAACTAAAAC 59.033 36.000 0.00 0.00 0.00 2.43
62 63 5.397240 CACCGTCGAAATTTGAACTAAAACC 59.603 40.000 0.00 0.00 0.00 3.27
63 64 5.066246 ACCGTCGAAATTTGAACTAAAACCA 59.934 36.000 0.00 0.00 0.00 3.67
64 65 6.146898 CCGTCGAAATTTGAACTAAAACCAT 58.853 36.000 0.00 0.00 0.00 3.55
65 66 6.087555 CCGTCGAAATTTGAACTAAAACCATG 59.912 38.462 0.00 0.00 0.00 3.66
66 67 6.087555 CGTCGAAATTTGAACTAAAACCATGG 59.912 38.462 11.19 11.19 0.00 3.66
67 68 5.923684 TCGAAATTTGAACTAAAACCATGGC 59.076 36.000 13.04 0.00 0.00 4.40
68 69 5.694006 CGAAATTTGAACTAAAACCATGGCA 59.306 36.000 13.04 0.00 0.00 4.92
69 70 6.346518 CGAAATTTGAACTAAAACCATGGCAC 60.347 38.462 13.04 0.00 0.00 5.01
70 71 5.806654 ATTTGAACTAAAACCATGGCACT 57.193 34.783 13.04 0.00 0.00 4.40
71 72 5.606348 TTTGAACTAAAACCATGGCACTT 57.394 34.783 13.04 5.19 0.00 3.16
72 73 6.716934 TTTGAACTAAAACCATGGCACTTA 57.283 33.333 13.04 6.14 0.00 2.24
73 74 6.909550 TTGAACTAAAACCATGGCACTTAT 57.090 33.333 13.04 0.00 0.00 1.73
74 75 6.909550 TGAACTAAAACCATGGCACTTATT 57.090 33.333 13.04 0.00 0.00 1.40
75 76 7.296628 TGAACTAAAACCATGGCACTTATTT 57.703 32.000 13.04 7.42 0.00 1.40
76 77 7.151308 TGAACTAAAACCATGGCACTTATTTG 58.849 34.615 13.04 2.13 0.00 2.32
77 78 6.036577 ACTAAAACCATGGCACTTATTTGG 57.963 37.500 13.04 8.31 0.00 3.28
78 79 5.777732 ACTAAAACCATGGCACTTATTTGGA 59.222 36.000 13.04 0.00 0.00 3.53
79 80 5.559148 AAAACCATGGCACTTATTTGGAA 57.441 34.783 13.04 0.00 0.00 3.53
80 81 5.559148 AAACCATGGCACTTATTTGGAAA 57.441 34.783 13.04 0.00 0.00 3.13
81 82 4.806640 ACCATGGCACTTATTTGGAAAG 57.193 40.909 13.04 0.00 0.00 2.62
82 83 3.515104 ACCATGGCACTTATTTGGAAAGG 59.485 43.478 13.04 0.00 0.00 3.11
83 84 3.768757 CCATGGCACTTATTTGGAAAGGA 59.231 43.478 0.00 0.00 0.00 3.36
84 85 4.142093 CCATGGCACTTATTTGGAAAGGAG 60.142 45.833 0.00 0.00 0.00 3.69
85 86 3.430453 TGGCACTTATTTGGAAAGGAGG 58.570 45.455 0.00 0.00 0.00 4.30
86 87 2.760650 GGCACTTATTTGGAAAGGAGGG 59.239 50.000 0.00 0.00 0.00 4.30
87 88 3.563479 GGCACTTATTTGGAAAGGAGGGA 60.563 47.826 0.00 0.00 0.00 4.20
88 89 3.696548 GCACTTATTTGGAAAGGAGGGAG 59.303 47.826 0.00 0.00 0.00 4.30
89 90 4.811063 GCACTTATTTGGAAAGGAGGGAGT 60.811 45.833 0.00 0.00 0.00 3.85
90 91 5.572885 GCACTTATTTGGAAAGGAGGGAGTA 60.573 44.000 0.00 0.00 0.00 2.59
91 92 6.116126 CACTTATTTGGAAAGGAGGGAGTAG 58.884 44.000 0.00 0.00 0.00 2.57
92 93 6.030082 ACTTATTTGGAAAGGAGGGAGTAGA 58.970 40.000 0.00 0.00 0.00 2.59
93 94 6.504279 ACTTATTTGGAAAGGAGGGAGTAGAA 59.496 38.462 0.00 0.00 0.00 2.10
94 95 5.860648 ATTTGGAAAGGAGGGAGTAGAAA 57.139 39.130 0.00 0.00 0.00 2.52
95 96 4.910458 TTGGAAAGGAGGGAGTAGAAAG 57.090 45.455 0.00 0.00 0.00 2.62
96 97 2.572104 TGGAAAGGAGGGAGTAGAAAGC 59.428 50.000 0.00 0.00 0.00 3.51
97 98 2.841266 GGAAAGGAGGGAGTAGAAAGCT 59.159 50.000 0.00 0.00 0.00 3.74
98 99 4.031611 GGAAAGGAGGGAGTAGAAAGCTA 58.968 47.826 0.00 0.00 0.00 3.32
99 100 4.100344 GGAAAGGAGGGAGTAGAAAGCTAG 59.900 50.000 0.00 0.00 0.00 3.42
100 101 2.673258 AGGAGGGAGTAGAAAGCTAGC 58.327 52.381 6.62 6.62 0.00 3.42
101 102 2.246327 AGGAGGGAGTAGAAAGCTAGCT 59.754 50.000 12.68 12.68 0.00 3.32
102 103 2.626266 GGAGGGAGTAGAAAGCTAGCTC 59.374 54.545 19.65 6.80 0.00 4.09
103 104 2.292292 GAGGGAGTAGAAAGCTAGCTCG 59.708 54.545 19.65 0.00 31.34 5.03
104 105 1.338655 GGGAGTAGAAAGCTAGCTCGG 59.661 57.143 19.65 0.00 31.34 4.63
105 106 2.025898 GGAGTAGAAAGCTAGCTCGGT 58.974 52.381 19.65 6.46 31.34 4.69
106 107 2.223618 GGAGTAGAAAGCTAGCTCGGTG 60.224 54.545 19.65 0.00 31.34 4.94
107 108 2.424246 GAGTAGAAAGCTAGCTCGGTGT 59.576 50.000 19.65 7.76 0.00 4.16
108 109 3.618351 AGTAGAAAGCTAGCTCGGTGTA 58.382 45.455 19.65 6.74 0.00 2.90
109 110 2.943449 AGAAAGCTAGCTCGGTGTAC 57.057 50.000 19.65 4.85 0.00 2.90
110 111 2.168496 AGAAAGCTAGCTCGGTGTACA 58.832 47.619 19.65 0.00 0.00 2.90
111 112 2.561419 AGAAAGCTAGCTCGGTGTACAA 59.439 45.455 19.65 0.00 0.00 2.41
112 113 3.006537 AGAAAGCTAGCTCGGTGTACAAA 59.993 43.478 19.65 0.00 0.00 2.83
113 114 3.611766 AAGCTAGCTCGGTGTACAAAT 57.388 42.857 19.65 0.00 0.00 2.32
114 115 3.166489 AGCTAGCTCGGTGTACAAATC 57.834 47.619 12.68 0.00 0.00 2.17
115 116 2.159085 AGCTAGCTCGGTGTACAAATCC 60.159 50.000 12.68 0.00 0.00 3.01
116 117 2.159085 GCTAGCTCGGTGTACAAATCCT 60.159 50.000 7.70 0.00 0.00 3.24
117 118 3.679083 GCTAGCTCGGTGTACAAATCCTT 60.679 47.826 7.70 0.00 0.00 3.36
118 119 4.441079 GCTAGCTCGGTGTACAAATCCTTA 60.441 45.833 7.70 0.00 0.00 2.69
119 120 4.546829 AGCTCGGTGTACAAATCCTTAA 57.453 40.909 0.00 0.00 0.00 1.85
120 121 4.901868 AGCTCGGTGTACAAATCCTTAAA 58.098 39.130 0.00 0.00 0.00 1.52
121 122 5.497474 AGCTCGGTGTACAAATCCTTAAAT 58.503 37.500 0.00 0.00 0.00 1.40
122 123 5.944007 AGCTCGGTGTACAAATCCTTAAATT 59.056 36.000 0.00 0.00 0.00 1.82
123 124 6.433093 AGCTCGGTGTACAAATCCTTAAATTT 59.567 34.615 0.00 0.00 0.00 1.82
124 125 6.745907 GCTCGGTGTACAAATCCTTAAATTTC 59.254 38.462 0.00 0.00 0.00 2.17
125 126 7.361799 GCTCGGTGTACAAATCCTTAAATTTCT 60.362 37.037 0.00 0.00 0.00 2.52
126 127 8.398878 TCGGTGTACAAATCCTTAAATTTCTT 57.601 30.769 0.00 0.00 0.00 2.52
127 128 8.852135 TCGGTGTACAAATCCTTAAATTTCTTT 58.148 29.630 0.00 0.00 0.00 2.52
128 129 9.471084 CGGTGTACAAATCCTTAAATTTCTTTT 57.529 29.630 0.00 0.00 0.00 2.27
134 135 9.996554 ACAAATCCTTAAATTTCTTTTGGTAGG 57.003 29.630 0.00 0.00 0.00 3.18
135 136 9.996554 CAAATCCTTAAATTTCTTTTGGTAGGT 57.003 29.630 0.00 0.00 0.00 3.08
136 137 9.996554 AAATCCTTAAATTTCTTTTGGTAGGTG 57.003 29.630 0.00 0.00 0.00 4.00
137 138 8.950007 ATCCTTAAATTTCTTTTGGTAGGTGA 57.050 30.769 0.00 0.00 0.00 4.02
138 139 8.173542 TCCTTAAATTTCTTTTGGTAGGTGAC 57.826 34.615 0.00 0.00 0.00 3.67
139 140 7.780745 TCCTTAAATTTCTTTTGGTAGGTGACA 59.219 33.333 0.00 0.00 0.00 3.58
140 141 8.417884 CCTTAAATTTCTTTTGGTAGGTGACAA 58.582 33.333 0.00 0.00 0.00 3.18
141 142 9.981114 CTTAAATTTCTTTTGGTAGGTGACAAT 57.019 29.630 0.00 0.00 0.00 2.71
142 143 9.757227 TTAAATTTCTTTTGGTAGGTGACAATG 57.243 29.630 0.00 0.00 0.00 2.82
143 144 6.976934 ATTTCTTTTGGTAGGTGACAATGT 57.023 33.333 0.00 0.00 0.00 2.71
144 145 6.385649 TTTCTTTTGGTAGGTGACAATGTC 57.614 37.500 6.41 6.41 0.00 3.06
145 146 5.304686 TCTTTTGGTAGGTGACAATGTCT 57.695 39.130 14.97 0.00 33.15 3.41
146 147 5.690865 TCTTTTGGTAGGTGACAATGTCTT 58.309 37.500 14.97 3.23 33.15 3.01
147 148 6.126409 TCTTTTGGTAGGTGACAATGTCTTT 58.874 36.000 14.97 2.89 33.15 2.52
148 149 6.605594 TCTTTTGGTAGGTGACAATGTCTTTT 59.394 34.615 14.97 2.55 33.15 2.27
149 150 5.766150 TTGGTAGGTGACAATGTCTTTTG 57.234 39.130 14.97 0.00 33.15 2.44
150 151 4.141287 TGGTAGGTGACAATGTCTTTTGG 58.859 43.478 14.97 0.00 33.15 3.28
151 152 4.141367 TGGTAGGTGACAATGTCTTTTGGA 60.141 41.667 14.97 0.00 33.15 3.53
152 153 5.010282 GGTAGGTGACAATGTCTTTTGGAT 58.990 41.667 14.97 0.00 33.15 3.41
153 154 6.177610 GGTAGGTGACAATGTCTTTTGGATA 58.822 40.000 14.97 0.00 33.15 2.59
154 155 6.316390 GGTAGGTGACAATGTCTTTTGGATAG 59.684 42.308 14.97 0.00 33.15 2.08
155 156 4.702131 AGGTGACAATGTCTTTTGGATAGC 59.298 41.667 14.97 1.34 33.15 2.97
156 157 4.142381 GGTGACAATGTCTTTTGGATAGCC 60.142 45.833 14.97 0.00 33.15 3.93
157 158 3.689161 TGACAATGTCTTTTGGATAGCCG 59.311 43.478 14.97 0.00 33.03 5.52
158 159 3.016736 ACAATGTCTTTTGGATAGCCGG 58.983 45.455 0.00 0.00 36.79 6.13
159 160 3.016736 CAATGTCTTTTGGATAGCCGGT 58.983 45.455 1.90 0.00 36.79 5.28
160 161 2.396590 TGTCTTTTGGATAGCCGGTC 57.603 50.000 1.90 0.00 36.79 4.79
161 162 1.906574 TGTCTTTTGGATAGCCGGTCT 59.093 47.619 1.90 3.10 36.79 3.85
162 163 3.101437 TGTCTTTTGGATAGCCGGTCTA 58.899 45.455 1.90 5.63 36.79 2.59
163 164 3.132289 TGTCTTTTGGATAGCCGGTCTAG 59.868 47.826 1.90 0.00 36.79 2.43
164 165 3.132467 GTCTTTTGGATAGCCGGTCTAGT 59.868 47.826 1.90 0.00 36.79 2.57
165 166 4.340381 GTCTTTTGGATAGCCGGTCTAGTA 59.660 45.833 1.90 0.00 36.79 1.82
166 167 5.010820 GTCTTTTGGATAGCCGGTCTAGTAT 59.989 44.000 1.90 0.00 36.79 2.12
167 168 4.866508 TTTGGATAGCCGGTCTAGTATG 57.133 45.455 1.90 0.00 36.79 2.39
168 169 2.168496 TGGATAGCCGGTCTAGTATGC 58.832 52.381 1.90 0.00 36.79 3.14
169 170 1.477295 GGATAGCCGGTCTAGTATGCC 59.523 57.143 1.90 0.57 0.00 4.40
170 171 2.168496 GATAGCCGGTCTAGTATGCCA 58.832 52.381 1.90 0.00 0.00 4.92
171 172 1.617322 TAGCCGGTCTAGTATGCCAG 58.383 55.000 1.90 0.00 0.00 4.85
172 173 1.301009 GCCGGTCTAGTATGCCAGC 60.301 63.158 1.90 0.00 0.00 4.85
173 174 1.367840 CCGGTCTAGTATGCCAGCC 59.632 63.158 0.00 0.00 0.00 4.85
174 175 1.399744 CCGGTCTAGTATGCCAGCCA 61.400 60.000 0.00 0.00 0.00 4.75
175 176 0.681733 CGGTCTAGTATGCCAGCCAT 59.318 55.000 0.00 0.00 37.97 4.40
176 177 1.606480 CGGTCTAGTATGCCAGCCATG 60.606 57.143 0.00 0.00 35.34 3.66
177 178 1.517242 GTCTAGTATGCCAGCCATGC 58.483 55.000 0.00 0.00 36.87 4.06
178 179 1.130777 TCTAGTATGCCAGCCATGCA 58.869 50.000 0.00 0.00 43.97 3.96
193 194 3.649073 CCATGCATGGCTGAACATATTG 58.351 45.455 31.95 4.59 41.75 1.90
194 195 3.554129 CCATGCATGGCTGAACATATTGG 60.554 47.826 31.95 5.76 41.75 3.16
195 196 1.409790 TGCATGGCTGAACATATTGGC 59.590 47.619 0.00 0.00 0.00 4.52
196 197 1.601162 GCATGGCTGAACATATTGGCG 60.601 52.381 0.00 0.00 0.00 5.69
197 198 0.670162 ATGGCTGAACATATTGGCGC 59.330 50.000 0.00 0.00 0.00 6.53
198 199 0.679321 TGGCTGAACATATTGGCGCA 60.679 50.000 10.83 0.00 0.00 6.09
199 200 0.248621 GGCTGAACATATTGGCGCAC 60.249 55.000 10.83 0.00 0.00 5.34
200 201 0.451383 GCTGAACATATTGGCGCACA 59.549 50.000 10.83 1.22 0.00 4.57
201 202 1.795162 GCTGAACATATTGGCGCACAC 60.795 52.381 10.83 0.00 0.00 3.82
202 203 1.468127 CTGAACATATTGGCGCACACA 59.532 47.619 10.83 0.00 0.00 3.72
203 204 1.882623 TGAACATATTGGCGCACACAA 59.117 42.857 10.83 4.62 0.00 3.33
204 205 2.095314 TGAACATATTGGCGCACACAAG 60.095 45.455 10.83 0.00 0.00 3.16
205 206 1.819928 ACATATTGGCGCACACAAGA 58.180 45.000 10.83 1.58 0.00 3.02
206 207 2.158559 ACATATTGGCGCACACAAGAA 58.841 42.857 10.83 0.00 0.00 2.52
207 208 2.556189 ACATATTGGCGCACACAAGAAA 59.444 40.909 10.83 0.00 0.00 2.52
208 209 3.193267 ACATATTGGCGCACACAAGAAAT 59.807 39.130 10.83 0.00 0.00 2.17
209 210 2.068837 ATTGGCGCACACAAGAAATG 57.931 45.000 10.83 0.00 0.00 2.32
210 211 0.743688 TTGGCGCACACAAGAAATGT 59.256 45.000 10.83 0.00 45.34 2.71
211 212 0.310543 TGGCGCACACAAGAAATGTC 59.689 50.000 10.83 0.00 41.46 3.06
212 213 0.387239 GGCGCACACAAGAAATGTCC 60.387 55.000 10.83 0.00 41.46 4.02
213 214 0.725784 GCGCACACAAGAAATGTCCG 60.726 55.000 0.30 0.00 41.46 4.79
214 215 0.865111 CGCACACAAGAAATGTCCGA 59.135 50.000 0.00 0.00 41.46 4.55
215 216 1.136252 CGCACACAAGAAATGTCCGAG 60.136 52.381 0.00 0.00 41.46 4.63
216 217 1.873591 GCACACAAGAAATGTCCGAGT 59.126 47.619 0.00 0.00 41.46 4.18
217 218 3.064207 GCACACAAGAAATGTCCGAGTA 58.936 45.455 0.00 0.00 41.46 2.59
218 219 3.496884 GCACACAAGAAATGTCCGAGTAA 59.503 43.478 0.00 0.00 41.46 2.24
219 220 4.154195 GCACACAAGAAATGTCCGAGTAAT 59.846 41.667 0.00 0.00 41.46 1.89
220 221 5.621422 CACACAAGAAATGTCCGAGTAATG 58.379 41.667 0.00 0.00 41.46 1.90
221 222 5.179368 CACACAAGAAATGTCCGAGTAATGT 59.821 40.000 0.00 0.00 41.46 2.71
222 223 6.367695 CACACAAGAAATGTCCGAGTAATGTA 59.632 38.462 0.00 0.00 41.46 2.29
223 224 6.932400 ACACAAGAAATGTCCGAGTAATGTAA 59.068 34.615 0.00 0.00 41.46 2.41
224 225 7.117812 ACACAAGAAATGTCCGAGTAATGTAAG 59.882 37.037 0.00 0.00 41.46 2.34
225 226 6.594159 ACAAGAAATGTCCGAGTAATGTAAGG 59.406 38.462 0.00 0.00 37.96 2.69
226 227 5.671493 AGAAATGTCCGAGTAATGTAAGGG 58.329 41.667 0.00 0.00 0.00 3.95
227 228 5.424252 AGAAATGTCCGAGTAATGTAAGGGA 59.576 40.000 0.00 0.00 0.00 4.20
228 229 5.687166 AATGTCCGAGTAATGTAAGGGAA 57.313 39.130 0.00 0.00 0.00 3.97
229 230 5.888982 ATGTCCGAGTAATGTAAGGGAAT 57.111 39.130 0.00 0.00 0.00 3.01
230 231 5.018539 TGTCCGAGTAATGTAAGGGAATG 57.981 43.478 0.00 0.00 0.00 2.67
231 232 4.712829 TGTCCGAGTAATGTAAGGGAATGA 59.287 41.667 0.00 0.00 0.00 2.57
232 233 5.163447 TGTCCGAGTAATGTAAGGGAATGAG 60.163 44.000 0.00 0.00 0.00 2.90
233 234 4.344102 TCCGAGTAATGTAAGGGAATGAGG 59.656 45.833 0.00 0.00 0.00 3.86
234 235 4.344102 CCGAGTAATGTAAGGGAATGAGGA 59.656 45.833 0.00 0.00 0.00 3.71
235 236 5.509840 CCGAGTAATGTAAGGGAATGAGGAG 60.510 48.000 0.00 0.00 0.00 3.69
236 237 5.509840 CGAGTAATGTAAGGGAATGAGGAGG 60.510 48.000 0.00 0.00 0.00 4.30
255 256 3.574826 GAGGTATAGGGGCTACACTTCTG 59.425 52.174 0.00 0.00 0.00 3.02
267 268 5.452777 GCTACACTTCTGTGAAATTTGTCC 58.547 41.667 0.00 0.00 46.55 4.02
291 292 3.840078 AGCAATGCACCCTAAAAATCCTT 59.160 39.130 8.35 0.00 0.00 3.36
298 299 6.287525 TGCACCCTAAAAATCCTTGAAAAAG 58.712 36.000 0.00 0.00 0.00 2.27
302 303 9.996554 CACCCTAAAAATCCTTGAAAAAGTATT 57.003 29.630 0.00 0.00 0.00 1.89
329 333 4.737649 GCTGCATCTAAAATGGGTTTAGGC 60.738 45.833 0.00 3.98 46.05 3.93
330 334 4.348486 TGCATCTAAAATGGGTTTAGGCA 58.652 39.130 6.12 6.04 46.05 4.75
331 335 4.961730 TGCATCTAAAATGGGTTTAGGCAT 59.038 37.500 6.12 0.00 46.05 4.40
344 350 9.660544 ATGGGTTTAGGCATTATCTTTTTAGAT 57.339 29.630 0.00 0.00 0.00 1.98
388 403 2.071540 CTAGTCGTGCATGCATATGGG 58.928 52.381 25.64 11.08 34.79 4.00
396 411 1.405872 CATGCATATGGGCCAACACT 58.594 50.000 11.89 0.00 0.00 3.55
397 412 1.067974 CATGCATATGGGCCAACACTG 59.932 52.381 11.89 6.98 0.00 3.66
398 413 0.039472 TGCATATGGGCCAACACTGT 59.961 50.000 11.89 0.00 0.00 3.55
399 414 0.457035 GCATATGGGCCAACACTGTG 59.543 55.000 11.89 6.19 0.00 3.66
407 422 3.206150 GGGCCAACACTGTGTGATATAG 58.794 50.000 15.11 1.45 36.96 1.31
413 428 5.008019 CCAACACTGTGTGATATAGCATTCC 59.992 44.000 15.11 0.00 36.96 3.01
418 433 4.635223 TGTGTGATATAGCATTCCTCAGC 58.365 43.478 0.00 0.00 0.00 4.26
420 435 2.670414 GTGATATAGCATTCCTCAGCGC 59.330 50.000 0.00 0.00 35.48 5.92
421 436 2.299867 TGATATAGCATTCCTCAGCGCA 59.700 45.455 11.47 0.00 35.48 6.09
488 508 9.830975 AGTTATAGAATATTGTACACATGCACA 57.169 29.630 0.00 0.00 0.00 4.57
516 536 4.284178 AGATTATTTGCAGGGCATGAGTT 58.716 39.130 1.99 0.00 38.76 3.01
523 543 1.133976 GCAGGGCATGAGTTGATACCT 60.134 52.381 1.99 0.00 0.00 3.08
567 587 7.512130 ACATGTCTGATGCTATCATTTAAGGA 58.488 34.615 0.00 0.00 38.85 3.36
625 645 7.340232 AGCTAGATGCACAAATTCTTCCATTTA 59.660 33.333 0.00 0.00 45.94 1.40
697 727 7.338703 CCCGACTAGATAACTAATGCCACTATA 59.661 40.741 0.00 0.00 0.00 1.31
886 918 6.827727 TGCTATAAATCCAGGACCTAGTTTC 58.172 40.000 0.00 0.00 0.00 2.78
946 978 1.269723 CCGAAAAGGAAGACAAAGCCC 59.730 52.381 0.00 0.00 45.00 5.19
958 990 1.282157 ACAAAGCCCCTCTCACCATAC 59.718 52.381 0.00 0.00 0.00 2.39
970 1002 3.565902 TCTCACCATACATCGAGCTAGTG 59.434 47.826 0.00 0.00 0.00 2.74
1011 1043 5.104610 TCAAGAGAGGAGAATGGATTGGAAG 60.105 44.000 0.00 0.00 0.00 3.46
1017 1049 5.165652 AGGAGAATGGATTGGAAGCCTATA 58.834 41.667 0.00 0.00 34.95 1.31
1373 1413 3.380320 GTGCCTTGCTCGGGTAATTAATT 59.620 43.478 5.89 5.89 0.00 1.40
1415 1474 7.115378 CACCAAATGTTGACAGAGCTTAATTTC 59.885 37.037 0.00 0.00 0.00 2.17
1422 1481 6.639632 TGACAGAGCTTAATTTCTTTTGCT 57.360 33.333 0.00 0.00 0.00 3.91
1424 1483 8.165239 TGACAGAGCTTAATTTCTTTTGCTTA 57.835 30.769 0.00 0.00 0.00 3.09
1448 1507 5.103000 ACTATAGCAAGAGTAACAAGTGCG 58.897 41.667 0.00 0.00 40.17 5.34
1466 1535 4.271049 AGTGCGGATCAGTCATAAATTTCG 59.729 41.667 0.00 0.00 0.00 3.46
1755 1832 4.250305 ACCACAGACCACCACGCC 62.250 66.667 0.00 0.00 0.00 5.68
2305 2397 3.376546 GGATGAAGAAACAGAGCATGGTC 59.623 47.826 17.19 17.19 0.00 4.02
2332 2428 0.649475 GATCATGCAGAGCGTGTGAC 59.351 55.000 10.62 1.53 44.84 3.67
2370 2478 3.821033 GGTGATTAAGGTGCAACTGTCTT 59.179 43.478 4.19 0.00 36.74 3.01
2379 2487 1.949257 CAACTGTCTTTCGGCACCC 59.051 57.895 0.00 0.00 0.00 4.61
2404 2517 3.158676 GGAGGAGGACATAGTTCGCTAT 58.841 50.000 0.00 0.00 40.85 2.97
2405 2518 3.574826 GGAGGAGGACATAGTTCGCTATT 59.425 47.826 0.00 0.00 38.29 1.73
2406 2519 4.039366 GGAGGAGGACATAGTTCGCTATTT 59.961 45.833 0.00 0.00 38.29 1.40
2407 2520 5.453480 GGAGGAGGACATAGTTCGCTATTTT 60.453 44.000 0.00 0.00 38.29 1.82
2408 2521 5.602628 AGGAGGACATAGTTCGCTATTTTC 58.397 41.667 0.00 0.00 38.29 2.29
2409 2522 5.364157 AGGAGGACATAGTTCGCTATTTTCT 59.636 40.000 0.00 0.00 38.29 2.52
2410 2523 6.049790 GGAGGACATAGTTCGCTATTTTCTT 58.950 40.000 0.00 0.00 38.29 2.52
2411 2524 6.201234 GGAGGACATAGTTCGCTATTTTCTTC 59.799 42.308 0.00 0.00 38.29 2.87
2412 2525 6.049790 AGGACATAGTTCGCTATTTTCTTCC 58.950 40.000 0.00 0.00 38.29 3.46
2413 2526 5.815740 GGACATAGTTCGCTATTTTCTTCCA 59.184 40.000 0.00 0.00 38.29 3.53
2414 2527 6.483640 GGACATAGTTCGCTATTTTCTTCCAT 59.516 38.462 0.00 0.00 38.29 3.41
2499 2624 7.709182 CACGTGGATTAGTCAAAGTGGATTATA 59.291 37.037 7.95 0.00 0.00 0.98
2517 2642 6.758416 GGATTATAGTTCGAACGGGTAAAGTT 59.242 38.462 21.87 4.50 34.07 2.66
2559 2691 6.128138 AGGCTTTACACTCCTCACTTTAAT 57.872 37.500 0.00 0.00 0.00 1.40
2836 3143 6.038050 CCTCTGTCTGAATGCCTTATTCTTTC 59.962 42.308 0.00 0.00 44.49 2.62
2844 3151 2.572556 TGCCTTATTCTTTCACGGGGTA 59.427 45.455 0.00 0.00 0.00 3.69
2845 3152 2.941064 GCCTTATTCTTTCACGGGGTAC 59.059 50.000 0.00 0.00 0.00 3.34
2897 3204 1.425694 GTATCCTCCTCCTTGGACCC 58.574 60.000 0.00 0.00 40.56 4.46
2917 3224 2.054799 CGGAGGGGAAGGATATTTGGA 58.945 52.381 0.00 0.00 0.00 3.53
3027 3334 5.751243 AAAATACCATATGAAGCACCGAC 57.249 39.130 3.65 0.00 0.00 4.79
3040 3347 1.149854 ACCGACCAAGGGACAAACC 59.850 57.895 0.00 0.00 35.02 3.27
3075 3382 1.948104 CCATATGGTGTGTGGTACGG 58.052 55.000 14.09 0.00 34.59 4.02
3076 3383 1.208535 CCATATGGTGTGTGGTACGGT 59.791 52.381 14.09 0.00 34.59 4.83
3168 3475 7.840931 TGCATTATTAGAACTGAGAGAAGACA 58.159 34.615 0.00 0.00 0.00 3.41
3217 3524 4.487804 TCACCTTTGGGATTGATTTGGAA 58.512 39.130 0.00 0.00 36.25 3.53
3226 3533 4.289245 GGATTGATTTGGAAGGGGAATCA 58.711 43.478 0.00 0.00 37.85 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.140144 TGTTTTGGAATGGAGGGAGAACT 59.860 43.478 0.00 0.00 0.00 3.01
1 2 3.496331 TGTTTTGGAATGGAGGGAGAAC 58.504 45.455 0.00 0.00 0.00 3.01
2 3 3.893753 TGTTTTGGAATGGAGGGAGAA 57.106 42.857 0.00 0.00 0.00 2.87
3 4 3.075882 ACATGTTTTGGAATGGAGGGAGA 59.924 43.478 0.00 0.00 0.00 3.71
4 5 3.434309 ACATGTTTTGGAATGGAGGGAG 58.566 45.455 0.00 0.00 0.00 4.30
5 6 3.541242 ACATGTTTTGGAATGGAGGGA 57.459 42.857 0.00 0.00 0.00 4.20
6 7 5.736951 TTTACATGTTTTGGAATGGAGGG 57.263 39.130 2.30 0.00 0.00 4.30
7 8 5.931724 GGTTTTACATGTTTTGGAATGGAGG 59.068 40.000 2.30 0.00 0.00 4.30
8 9 6.520272 TGGTTTTACATGTTTTGGAATGGAG 58.480 36.000 2.30 0.00 0.00 3.86
9 10 6.485830 TGGTTTTACATGTTTTGGAATGGA 57.514 33.333 2.30 0.00 0.00 3.41
10 11 6.149142 CCATGGTTTTACATGTTTTGGAATGG 59.851 38.462 2.30 8.13 45.21 3.16
11 12 6.709846 ACCATGGTTTTACATGTTTTGGAATG 59.290 34.615 13.00 2.65 45.21 2.67
12 13 6.836242 ACCATGGTTTTACATGTTTTGGAAT 58.164 32.000 13.00 0.00 45.21 3.01
13 14 6.240549 ACCATGGTTTTACATGTTTTGGAA 57.759 33.333 13.00 0.00 45.21 3.53
14 15 5.878406 ACCATGGTTTTACATGTTTTGGA 57.122 34.783 13.00 0.00 45.21 3.53
15 16 6.422400 GTGTACCATGGTTTTACATGTTTTGG 59.578 38.462 25.38 3.96 45.21 3.28
16 17 6.422400 GGTGTACCATGGTTTTACATGTTTTG 59.578 38.462 25.38 0.00 45.21 2.44
17 18 6.517605 GGTGTACCATGGTTTTACATGTTTT 58.482 36.000 25.38 0.00 45.21 2.43
18 19 5.278561 CGGTGTACCATGGTTTTACATGTTT 60.279 40.000 25.38 0.00 45.21 2.83
19 20 4.216687 CGGTGTACCATGGTTTTACATGTT 59.783 41.667 25.38 0.00 45.21 2.71
20 21 3.754323 CGGTGTACCATGGTTTTACATGT 59.246 43.478 25.38 2.69 45.21 3.21
21 22 3.754323 ACGGTGTACCATGGTTTTACATG 59.246 43.478 25.38 18.57 46.02 3.21
22 23 4.004982 GACGGTGTACCATGGTTTTACAT 58.995 43.478 25.38 6.64 35.14 2.29
23 24 3.401182 GACGGTGTACCATGGTTTTACA 58.599 45.455 25.38 18.79 35.14 2.41
24 25 2.412770 CGACGGTGTACCATGGTTTTAC 59.587 50.000 25.38 16.12 35.14 2.01
25 26 2.298446 TCGACGGTGTACCATGGTTTTA 59.702 45.455 25.38 7.02 35.14 1.52
26 27 1.070445 TCGACGGTGTACCATGGTTTT 59.930 47.619 25.38 0.00 35.14 2.43
27 28 0.680618 TCGACGGTGTACCATGGTTT 59.319 50.000 25.38 0.23 35.14 3.27
28 29 0.680618 TTCGACGGTGTACCATGGTT 59.319 50.000 25.38 2.74 35.14 3.67
29 30 0.680618 TTTCGACGGTGTACCATGGT 59.319 50.000 23.55 23.55 35.14 3.55
30 31 2.018542 ATTTCGACGGTGTACCATGG 57.981 50.000 11.19 11.19 35.14 3.66
31 32 3.433957 TCAAATTTCGACGGTGTACCATG 59.566 43.478 1.50 0.00 35.14 3.66
32 33 3.666274 TCAAATTTCGACGGTGTACCAT 58.334 40.909 1.50 0.00 35.14 3.55
33 34 3.109044 TCAAATTTCGACGGTGTACCA 57.891 42.857 1.50 0.00 35.14 3.25
34 35 3.495753 AGTTCAAATTTCGACGGTGTACC 59.504 43.478 0.00 0.00 0.00 3.34
35 36 4.720530 AGTTCAAATTTCGACGGTGTAC 57.279 40.909 0.00 0.00 0.00 2.90
36 37 6.841443 TTTAGTTCAAATTTCGACGGTGTA 57.159 33.333 0.00 0.00 0.00 2.90
37 38 5.738118 TTTAGTTCAAATTTCGACGGTGT 57.262 34.783 0.00 0.00 0.00 4.16
38 39 5.397240 GGTTTTAGTTCAAATTTCGACGGTG 59.603 40.000 0.00 0.00 0.00 4.94
39 40 5.066246 TGGTTTTAGTTCAAATTTCGACGGT 59.934 36.000 0.00 0.00 0.00 4.83
40 41 5.512473 TGGTTTTAGTTCAAATTTCGACGG 58.488 37.500 0.00 0.00 0.00 4.79
41 42 6.087555 CCATGGTTTTAGTTCAAATTTCGACG 59.912 38.462 2.57 0.00 0.00 5.12
42 43 6.128929 GCCATGGTTTTAGTTCAAATTTCGAC 60.129 38.462 14.67 0.00 0.00 4.20
43 44 5.923684 GCCATGGTTTTAGTTCAAATTTCGA 59.076 36.000 14.67 0.00 0.00 3.71
44 45 5.694006 TGCCATGGTTTTAGTTCAAATTTCG 59.306 36.000 14.67 0.00 0.00 3.46
45 46 6.705825 AGTGCCATGGTTTTAGTTCAAATTTC 59.294 34.615 14.67 0.00 0.00 2.17
46 47 6.591001 AGTGCCATGGTTTTAGTTCAAATTT 58.409 32.000 14.67 0.00 0.00 1.82
47 48 6.173427 AGTGCCATGGTTTTAGTTCAAATT 57.827 33.333 14.67 0.00 0.00 1.82
48 49 5.806654 AGTGCCATGGTTTTAGTTCAAAT 57.193 34.783 14.67 0.00 0.00 2.32
49 50 5.606348 AAGTGCCATGGTTTTAGTTCAAA 57.394 34.783 14.67 0.00 0.00 2.69
50 51 6.909550 ATAAGTGCCATGGTTTTAGTTCAA 57.090 33.333 14.67 0.00 0.00 2.69
51 52 6.909550 AATAAGTGCCATGGTTTTAGTTCA 57.090 33.333 14.67 0.00 0.00 3.18
52 53 6.589907 CCAAATAAGTGCCATGGTTTTAGTTC 59.410 38.462 14.67 0.00 0.00 3.01
53 54 6.268847 TCCAAATAAGTGCCATGGTTTTAGTT 59.731 34.615 14.67 11.73 32.90 2.24
54 55 5.777732 TCCAAATAAGTGCCATGGTTTTAGT 59.222 36.000 14.67 6.41 32.90 2.24
55 56 6.279513 TCCAAATAAGTGCCATGGTTTTAG 57.720 37.500 14.67 0.00 32.90 1.85
56 57 6.672266 TTCCAAATAAGTGCCATGGTTTTA 57.328 33.333 14.67 10.01 32.90 1.52
57 58 5.559148 TTCCAAATAAGTGCCATGGTTTT 57.441 34.783 14.67 8.07 32.90 2.43
58 59 5.512921 CCTTTCCAAATAAGTGCCATGGTTT 60.513 40.000 14.67 8.43 32.90 3.27
59 60 4.020307 CCTTTCCAAATAAGTGCCATGGTT 60.020 41.667 14.67 2.11 32.90 3.67
60 61 3.515104 CCTTTCCAAATAAGTGCCATGGT 59.485 43.478 14.67 0.00 32.90 3.55
61 62 3.768757 TCCTTTCCAAATAAGTGCCATGG 59.231 43.478 7.63 7.63 0.00 3.66
62 63 4.142093 CCTCCTTTCCAAATAAGTGCCATG 60.142 45.833 0.00 0.00 0.00 3.66
63 64 4.026052 CCTCCTTTCCAAATAAGTGCCAT 58.974 43.478 0.00 0.00 0.00 4.40
64 65 3.430453 CCTCCTTTCCAAATAAGTGCCA 58.570 45.455 0.00 0.00 0.00 4.92
65 66 2.760650 CCCTCCTTTCCAAATAAGTGCC 59.239 50.000 0.00 0.00 0.00 5.01
66 67 3.696548 CTCCCTCCTTTCCAAATAAGTGC 59.303 47.826 0.00 0.00 0.00 4.40
67 68 4.923415 ACTCCCTCCTTTCCAAATAAGTG 58.077 43.478 0.00 0.00 0.00 3.16
68 69 6.030082 TCTACTCCCTCCTTTCCAAATAAGT 58.970 40.000 0.00 0.00 0.00 2.24
69 70 6.561519 TCTACTCCCTCCTTTCCAAATAAG 57.438 41.667 0.00 0.00 0.00 1.73
70 71 6.963117 TTCTACTCCCTCCTTTCCAAATAA 57.037 37.500 0.00 0.00 0.00 1.40
71 72 6.578439 GCTTTCTACTCCCTCCTTTCCAAATA 60.578 42.308 0.00 0.00 0.00 1.40
72 73 5.808050 GCTTTCTACTCCCTCCTTTCCAAAT 60.808 44.000 0.00 0.00 0.00 2.32
73 74 4.506802 GCTTTCTACTCCCTCCTTTCCAAA 60.507 45.833 0.00 0.00 0.00 3.28
74 75 3.009143 GCTTTCTACTCCCTCCTTTCCAA 59.991 47.826 0.00 0.00 0.00 3.53
75 76 2.572104 GCTTTCTACTCCCTCCTTTCCA 59.428 50.000 0.00 0.00 0.00 3.53
76 77 2.841266 AGCTTTCTACTCCCTCCTTTCC 59.159 50.000 0.00 0.00 0.00 3.13
77 78 4.442332 GCTAGCTTTCTACTCCCTCCTTTC 60.442 50.000 7.70 0.00 0.00 2.62
78 79 3.452990 GCTAGCTTTCTACTCCCTCCTTT 59.547 47.826 7.70 0.00 0.00 3.11
79 80 3.035363 GCTAGCTTTCTACTCCCTCCTT 58.965 50.000 7.70 0.00 0.00 3.36
80 81 2.246327 AGCTAGCTTTCTACTCCCTCCT 59.754 50.000 12.68 0.00 0.00 3.69
81 82 2.626266 GAGCTAGCTTTCTACTCCCTCC 59.374 54.545 20.42 0.00 0.00 4.30
82 83 2.292292 CGAGCTAGCTTTCTACTCCCTC 59.708 54.545 20.42 0.09 0.00 4.30
83 84 2.303175 CGAGCTAGCTTTCTACTCCCT 58.697 52.381 20.42 0.00 0.00 4.20
84 85 1.338655 CCGAGCTAGCTTTCTACTCCC 59.661 57.143 20.42 1.13 0.00 4.30
85 86 2.025898 ACCGAGCTAGCTTTCTACTCC 58.974 52.381 20.42 1.93 0.00 3.85
86 87 2.424246 ACACCGAGCTAGCTTTCTACTC 59.576 50.000 20.42 3.04 0.00 2.59
87 88 2.448453 ACACCGAGCTAGCTTTCTACT 58.552 47.619 20.42 0.00 0.00 2.57
88 89 2.943449 ACACCGAGCTAGCTTTCTAC 57.057 50.000 20.42 4.34 0.00 2.59
89 90 3.349927 TGTACACCGAGCTAGCTTTCTA 58.650 45.455 20.42 1.80 0.00 2.10
90 91 2.168496 TGTACACCGAGCTAGCTTTCT 58.832 47.619 20.42 0.56 0.00 2.52
91 92 2.649331 TGTACACCGAGCTAGCTTTC 57.351 50.000 20.42 6.27 0.00 2.62
92 93 3.396260 TTTGTACACCGAGCTAGCTTT 57.604 42.857 20.42 3.48 0.00 3.51
93 94 3.522553 GATTTGTACACCGAGCTAGCTT 58.477 45.455 20.42 4.72 0.00 3.74
94 95 2.159085 GGATTTGTACACCGAGCTAGCT 60.159 50.000 19.45 19.45 0.00 3.32
95 96 2.159085 AGGATTTGTACACCGAGCTAGC 60.159 50.000 6.62 6.62 0.00 3.42
96 97 3.802948 AGGATTTGTACACCGAGCTAG 57.197 47.619 0.00 0.00 0.00 3.42
97 98 5.664294 TTAAGGATTTGTACACCGAGCTA 57.336 39.130 0.00 0.00 0.00 3.32
98 99 4.546829 TTAAGGATTTGTACACCGAGCT 57.453 40.909 0.00 0.00 0.00 4.09
99 100 5.813080 ATTTAAGGATTTGTACACCGAGC 57.187 39.130 0.00 0.00 0.00 5.03
100 101 8.040716 AGAAATTTAAGGATTTGTACACCGAG 57.959 34.615 0.00 0.00 29.75 4.63
101 102 7.989416 AGAAATTTAAGGATTTGTACACCGA 57.011 32.000 0.00 0.00 29.75 4.69
102 103 9.471084 AAAAGAAATTTAAGGATTTGTACACCG 57.529 29.630 0.00 0.00 29.75 4.94
108 109 9.996554 CCTACCAAAAGAAATTTAAGGATTTGT 57.003 29.630 0.00 0.00 31.16 2.83
109 110 9.996554 ACCTACCAAAAGAAATTTAAGGATTTG 57.003 29.630 0.00 0.00 32.70 2.32
110 111 9.996554 CACCTACCAAAAGAAATTTAAGGATTT 57.003 29.630 0.00 0.00 32.70 2.17
111 112 9.374711 TCACCTACCAAAAGAAATTTAAGGATT 57.625 29.630 0.00 0.00 32.70 3.01
112 113 8.803235 GTCACCTACCAAAAGAAATTTAAGGAT 58.197 33.333 0.00 0.00 32.70 3.24
113 114 7.780745 TGTCACCTACCAAAAGAAATTTAAGGA 59.219 33.333 0.00 0.00 32.70 3.36
114 115 7.947282 TGTCACCTACCAAAAGAAATTTAAGG 58.053 34.615 0.00 0.00 33.74 2.69
115 116 9.981114 ATTGTCACCTACCAAAAGAAATTTAAG 57.019 29.630 0.00 0.00 0.00 1.85
116 117 9.757227 CATTGTCACCTACCAAAAGAAATTTAA 57.243 29.630 0.00 0.00 0.00 1.52
117 118 8.919145 ACATTGTCACCTACCAAAAGAAATTTA 58.081 29.630 0.00 0.00 0.00 1.40
118 119 7.791029 ACATTGTCACCTACCAAAAGAAATTT 58.209 30.769 0.00 0.00 0.00 1.82
119 120 7.287696 AGACATTGTCACCTACCAAAAGAAATT 59.712 33.333 18.57 0.00 34.60 1.82
120 121 6.777580 AGACATTGTCACCTACCAAAAGAAAT 59.222 34.615 18.57 0.00 34.60 2.17
121 122 6.126409 AGACATTGTCACCTACCAAAAGAAA 58.874 36.000 18.57 0.00 34.60 2.52
122 123 5.690865 AGACATTGTCACCTACCAAAAGAA 58.309 37.500 18.57 0.00 34.60 2.52
123 124 5.304686 AGACATTGTCACCTACCAAAAGA 57.695 39.130 18.57 0.00 34.60 2.52
124 125 6.391227 AAAGACATTGTCACCTACCAAAAG 57.609 37.500 18.57 0.00 34.60 2.27
125 126 6.406400 CCAAAAGACATTGTCACCTACCAAAA 60.406 38.462 18.57 0.00 34.60 2.44
126 127 5.068460 CCAAAAGACATTGTCACCTACCAAA 59.932 40.000 18.57 0.00 34.60 3.28
127 128 4.582656 CCAAAAGACATTGTCACCTACCAA 59.417 41.667 18.57 0.00 34.60 3.67
128 129 4.141287 CCAAAAGACATTGTCACCTACCA 58.859 43.478 18.57 0.00 34.60 3.25
129 130 4.394729 TCCAAAAGACATTGTCACCTACC 58.605 43.478 18.57 0.00 34.60 3.18
130 131 6.183360 GCTATCCAAAAGACATTGTCACCTAC 60.183 42.308 18.57 0.00 34.60 3.18
131 132 5.880332 GCTATCCAAAAGACATTGTCACCTA 59.120 40.000 18.57 0.11 34.60 3.08
132 133 4.702131 GCTATCCAAAAGACATTGTCACCT 59.298 41.667 18.57 0.31 34.60 4.00
133 134 4.142381 GGCTATCCAAAAGACATTGTCACC 60.142 45.833 18.57 0.00 34.60 4.02
134 135 4.437390 CGGCTATCCAAAAGACATTGTCAC 60.437 45.833 18.57 0.00 34.60 3.67
135 136 3.689161 CGGCTATCCAAAAGACATTGTCA 59.311 43.478 18.57 0.00 34.60 3.58
136 137 3.065371 CCGGCTATCCAAAAGACATTGTC 59.935 47.826 8.82 8.82 0.00 3.18
137 138 3.016736 CCGGCTATCCAAAAGACATTGT 58.983 45.455 0.00 0.00 0.00 2.71
138 139 3.016736 ACCGGCTATCCAAAAGACATTG 58.983 45.455 0.00 0.00 0.00 2.82
139 140 3.054361 AGACCGGCTATCCAAAAGACATT 60.054 43.478 0.00 0.00 0.00 2.71
140 141 2.505819 AGACCGGCTATCCAAAAGACAT 59.494 45.455 0.00 0.00 0.00 3.06
141 142 1.906574 AGACCGGCTATCCAAAAGACA 59.093 47.619 0.00 0.00 0.00 3.41
142 143 2.693267 AGACCGGCTATCCAAAAGAC 57.307 50.000 0.00 0.00 0.00 3.01
143 144 3.371965 ACTAGACCGGCTATCCAAAAGA 58.628 45.455 0.00 0.00 0.00 2.52
144 145 3.821421 ACTAGACCGGCTATCCAAAAG 57.179 47.619 0.00 0.00 0.00 2.27
145 146 4.502604 GCATACTAGACCGGCTATCCAAAA 60.503 45.833 0.00 0.00 0.00 2.44
146 147 3.006537 GCATACTAGACCGGCTATCCAAA 59.993 47.826 0.00 0.00 0.00 3.28
147 148 2.561419 GCATACTAGACCGGCTATCCAA 59.439 50.000 0.00 0.00 0.00 3.53
148 149 2.168496 GCATACTAGACCGGCTATCCA 58.832 52.381 0.00 0.00 0.00 3.41
149 150 1.477295 GGCATACTAGACCGGCTATCC 59.523 57.143 0.00 0.00 0.00 2.59
150 151 2.164624 CTGGCATACTAGACCGGCTATC 59.835 54.545 0.00 0.00 0.00 2.08
151 152 2.171840 CTGGCATACTAGACCGGCTAT 58.828 52.381 0.00 0.00 0.00 2.97
152 153 1.617322 CTGGCATACTAGACCGGCTA 58.383 55.000 0.00 3.10 0.00 3.93
153 154 2.431023 CTGGCATACTAGACCGGCT 58.569 57.895 0.00 1.78 0.00 5.52
155 156 1.367840 GGCTGGCATACTAGACCGG 59.632 63.158 0.00 0.00 0.00 5.28
156 157 0.681733 ATGGCTGGCATACTAGACCG 59.318 55.000 15.72 0.00 0.00 4.79
157 158 1.879796 GCATGGCTGGCATACTAGACC 60.880 57.143 16.84 0.00 0.00 3.85
158 159 1.202687 TGCATGGCTGGCATACTAGAC 60.203 52.381 16.84 3.48 36.11 2.59
159 160 1.130777 TGCATGGCTGGCATACTAGA 58.869 50.000 16.84 0.00 36.11 2.43
160 161 3.711937 TGCATGGCTGGCATACTAG 57.288 52.632 16.84 5.68 36.11 2.57
173 174 3.649073 CCAATATGTTCAGCCATGCATG 58.351 45.455 20.19 20.19 0.00 4.06
174 175 2.036733 GCCAATATGTTCAGCCATGCAT 59.963 45.455 0.00 0.00 0.00 3.96
175 176 1.409790 GCCAATATGTTCAGCCATGCA 59.590 47.619 0.00 0.00 0.00 3.96
176 177 1.601162 CGCCAATATGTTCAGCCATGC 60.601 52.381 0.00 0.00 0.00 4.06
177 178 1.601162 GCGCCAATATGTTCAGCCATG 60.601 52.381 0.00 0.00 0.00 3.66
178 179 0.670162 GCGCCAATATGTTCAGCCAT 59.330 50.000 0.00 0.00 0.00 4.40
179 180 0.679321 TGCGCCAATATGTTCAGCCA 60.679 50.000 4.18 0.00 0.00 4.75
180 181 0.248621 GTGCGCCAATATGTTCAGCC 60.249 55.000 4.18 0.00 0.00 4.85
181 182 0.451383 TGTGCGCCAATATGTTCAGC 59.549 50.000 4.18 0.00 0.00 4.26
182 183 1.468127 TGTGTGCGCCAATATGTTCAG 59.532 47.619 4.18 0.00 0.00 3.02
183 184 1.528129 TGTGTGCGCCAATATGTTCA 58.472 45.000 4.18 0.00 0.00 3.18
184 185 2.161410 TCTTGTGTGCGCCAATATGTTC 59.839 45.455 4.18 0.00 0.00 3.18
185 186 2.158559 TCTTGTGTGCGCCAATATGTT 58.841 42.857 4.18 0.00 0.00 2.71
186 187 1.819928 TCTTGTGTGCGCCAATATGT 58.180 45.000 4.18 0.00 0.00 2.29
187 188 2.917701 TTCTTGTGTGCGCCAATATG 57.082 45.000 4.18 0.00 0.00 1.78
188 189 3.193267 ACATTTCTTGTGTGCGCCAATAT 59.807 39.130 4.18 0.00 37.11 1.28
189 190 2.556189 ACATTTCTTGTGTGCGCCAATA 59.444 40.909 4.18 0.00 37.11 1.90
190 191 1.340889 ACATTTCTTGTGTGCGCCAAT 59.659 42.857 4.18 0.00 37.11 3.16
191 192 0.743688 ACATTTCTTGTGTGCGCCAA 59.256 45.000 4.18 0.32 37.11 4.52
192 193 0.310543 GACATTTCTTGTGTGCGCCA 59.689 50.000 4.18 0.00 39.18 5.69
193 194 0.387239 GGACATTTCTTGTGTGCGCC 60.387 55.000 4.18 0.00 39.18 6.53
194 195 3.092081 GGACATTTCTTGTGTGCGC 57.908 52.632 0.00 0.00 39.18 6.09
196 197 1.873591 ACTCGGACATTTCTTGTGTGC 59.126 47.619 0.00 0.00 39.18 4.57
197 198 5.179368 ACATTACTCGGACATTTCTTGTGTG 59.821 40.000 0.00 0.00 39.18 3.82
198 199 5.305585 ACATTACTCGGACATTTCTTGTGT 58.694 37.500 0.00 0.00 39.18 3.72
199 200 5.862924 ACATTACTCGGACATTTCTTGTG 57.137 39.130 0.00 0.00 39.18 3.33
200 201 6.594159 CCTTACATTACTCGGACATTTCTTGT 59.406 38.462 0.00 0.00 42.79 3.16
201 202 6.037172 CCCTTACATTACTCGGACATTTCTTG 59.963 42.308 0.00 0.00 0.00 3.02
202 203 6.070424 TCCCTTACATTACTCGGACATTTCTT 60.070 38.462 0.00 0.00 0.00 2.52
203 204 5.424252 TCCCTTACATTACTCGGACATTTCT 59.576 40.000 0.00 0.00 0.00 2.52
204 205 5.667466 TCCCTTACATTACTCGGACATTTC 58.333 41.667 0.00 0.00 0.00 2.17
205 206 5.687166 TCCCTTACATTACTCGGACATTT 57.313 39.130 0.00 0.00 0.00 2.32
206 207 5.687166 TTCCCTTACATTACTCGGACATT 57.313 39.130 0.00 0.00 0.00 2.71
207 208 5.365605 TCATTCCCTTACATTACTCGGACAT 59.634 40.000 0.00 0.00 0.00 3.06
208 209 4.712829 TCATTCCCTTACATTACTCGGACA 59.287 41.667 0.00 0.00 0.00 4.02
209 210 5.272283 TCATTCCCTTACATTACTCGGAC 57.728 43.478 0.00 0.00 0.00 4.79
210 211 4.344102 CCTCATTCCCTTACATTACTCGGA 59.656 45.833 0.00 0.00 0.00 4.55
211 212 4.344102 TCCTCATTCCCTTACATTACTCGG 59.656 45.833 0.00 0.00 0.00 4.63
212 213 5.509840 CCTCCTCATTCCCTTACATTACTCG 60.510 48.000 0.00 0.00 0.00 4.18
213 214 5.367060 ACCTCCTCATTCCCTTACATTACTC 59.633 44.000 0.00 0.00 0.00 2.59
214 215 5.289510 ACCTCCTCATTCCCTTACATTACT 58.710 41.667 0.00 0.00 0.00 2.24
215 216 5.632034 ACCTCCTCATTCCCTTACATTAC 57.368 43.478 0.00 0.00 0.00 1.89
216 217 7.678598 CCTATACCTCCTCATTCCCTTACATTA 59.321 40.741 0.00 0.00 0.00 1.90
217 218 6.502158 CCTATACCTCCTCATTCCCTTACATT 59.498 42.308 0.00 0.00 0.00 2.71
218 219 6.026186 CCTATACCTCCTCATTCCCTTACAT 58.974 44.000 0.00 0.00 0.00 2.29
219 220 5.403512 CCTATACCTCCTCATTCCCTTACA 58.596 45.833 0.00 0.00 0.00 2.41
220 221 4.778427 CCCTATACCTCCTCATTCCCTTAC 59.222 50.000 0.00 0.00 0.00 2.34
221 222 4.202901 CCCCTATACCTCCTCATTCCCTTA 60.203 50.000 0.00 0.00 0.00 2.69
222 223 3.441658 CCCCTATACCTCCTCATTCCCTT 60.442 52.174 0.00 0.00 0.00 3.95
223 224 2.114506 CCCCTATACCTCCTCATTCCCT 59.885 54.545 0.00 0.00 0.00 4.20
224 225 2.552367 CCCCTATACCTCCTCATTCCC 58.448 57.143 0.00 0.00 0.00 3.97
225 226 1.909986 GCCCCTATACCTCCTCATTCC 59.090 57.143 0.00 0.00 0.00 3.01
226 227 2.909217 AGCCCCTATACCTCCTCATTC 58.091 52.381 0.00 0.00 0.00 2.67
227 228 3.144125 TGTAGCCCCTATACCTCCTCATT 59.856 47.826 0.00 0.00 0.00 2.57
228 229 2.728013 TGTAGCCCCTATACCTCCTCAT 59.272 50.000 0.00 0.00 0.00 2.90
229 230 2.149556 TGTAGCCCCTATACCTCCTCA 58.850 52.381 0.00 0.00 0.00 3.86
230 231 2.110365 AGTGTAGCCCCTATACCTCCTC 59.890 54.545 0.00 0.00 30.10 3.71
231 232 2.153841 AGTGTAGCCCCTATACCTCCT 58.846 52.381 0.00 0.00 30.10 3.69
232 233 2.698438 AGTGTAGCCCCTATACCTCC 57.302 55.000 0.00 0.00 30.10 4.30
233 234 3.574826 CAGAAGTGTAGCCCCTATACCTC 59.425 52.174 0.00 0.00 30.10 3.85
234 235 3.052033 ACAGAAGTGTAGCCCCTATACCT 60.052 47.826 0.00 0.00 34.05 3.08
235 236 3.069729 CACAGAAGTGTAGCCCCTATACC 59.930 52.174 0.00 0.00 40.92 2.73
236 237 3.958798 TCACAGAAGTGTAGCCCCTATAC 59.041 47.826 0.00 0.00 46.01 1.47
255 256 3.808726 TGCATTGCTTGGACAAATTTCAC 59.191 39.130 10.49 0.00 32.27 3.18
267 268 3.934579 GGATTTTTAGGGTGCATTGCTTG 59.065 43.478 10.49 0.00 0.00 4.01
291 292 5.509498 AGATGCAGCCCTAATACTTTTTCA 58.491 37.500 0.00 0.00 0.00 2.69
298 299 5.183904 CCCATTTTAGATGCAGCCCTAATAC 59.816 44.000 0.00 0.00 0.00 1.89
302 303 2.513738 ACCCATTTTAGATGCAGCCCTA 59.486 45.455 0.00 0.00 0.00 3.53
303 304 1.288932 ACCCATTTTAGATGCAGCCCT 59.711 47.619 0.00 0.00 0.00 5.19
367 373 1.462283 CCATATGCATGCACGACTAGC 59.538 52.381 25.37 0.00 0.00 3.42
369 375 1.877680 GCCCATATGCATGCACGACTA 60.878 52.381 25.37 12.16 0.00 2.59
371 377 1.283793 GCCCATATGCATGCACGAC 59.716 57.895 25.37 5.86 0.00 4.34
388 403 3.270027 TGCTATATCACACAGTGTTGGC 58.730 45.455 2.45 3.92 34.79 4.52
396 411 4.635223 GCTGAGGAATGCTATATCACACA 58.365 43.478 0.00 0.00 0.00 3.72
397 412 3.677121 CGCTGAGGAATGCTATATCACAC 59.323 47.826 0.00 0.00 0.00 3.82
398 413 3.862264 GCGCTGAGGAATGCTATATCACA 60.862 47.826 0.00 0.00 0.00 3.58
399 414 2.670414 GCGCTGAGGAATGCTATATCAC 59.330 50.000 0.00 0.00 0.00 3.06
407 422 1.855213 TTGTGTGCGCTGAGGAATGC 61.855 55.000 9.73 0.00 0.00 3.56
413 428 2.658325 GCTTTAATTTGTGTGCGCTGAG 59.342 45.455 9.73 0.00 0.00 3.35
418 433 7.920062 CAATATTTGCTTTAATTTGTGTGCG 57.080 32.000 0.00 0.00 0.00 5.34
488 508 5.001833 TGCCCTGCAAATAATCTATGGAT 57.998 39.130 0.00 0.00 34.76 3.41
627 647 7.994911 TGGAACAAGACATTATCATCTAGCATT 59.005 33.333 0.00 0.00 31.92 3.56
628 649 7.512130 TGGAACAAGACATTATCATCTAGCAT 58.488 34.615 0.00 0.00 31.92 3.79
804 836 0.394762 TCATGCCCTGCAGACAATCC 60.395 55.000 17.39 0.00 43.65 3.01
843 875 4.651778 AGCAAAAGACATACTAGTGGCAA 58.348 39.130 5.39 0.00 0.00 4.52
946 978 1.959985 AGCTCGATGTATGGTGAGAGG 59.040 52.381 0.00 0.00 0.00 3.69
958 990 4.867047 ACAATCAAGTTCACTAGCTCGATG 59.133 41.667 0.00 0.00 0.00 3.84
1011 1043 2.135933 GCCAACATCGTCACTATAGGC 58.864 52.381 4.43 0.00 0.00 3.93
1017 1049 1.667830 CACCGCCAACATCGTCACT 60.668 57.895 0.00 0.00 0.00 3.41
1395 1435 7.383300 GCAAAAGAAATTAAGCTCTGTCAACAT 59.617 33.333 0.00 0.00 0.00 2.71
1422 1481 7.274904 CGCACTTGTTACTCTTGCTATAGTTAA 59.725 37.037 0.84 0.00 0.00 2.01
1424 1483 5.577164 CGCACTTGTTACTCTTGCTATAGTT 59.423 40.000 0.84 0.00 0.00 2.24
1448 1507 7.426929 AGCATACGAAATTTATGACTGATCC 57.573 36.000 4.01 0.00 0.00 3.36
1732 1809 4.295119 GTGGTCTGTGGTCCGCGT 62.295 66.667 4.92 0.00 0.00 6.01
1736 1813 2.030562 CGTGGTGGTCTGTGGTCC 59.969 66.667 0.00 0.00 0.00 4.46
2249 2332 4.803426 GTGACGGAGGAGGCAGCG 62.803 72.222 0.00 0.00 0.00 5.18
2305 2397 1.263484 GCTCTGCATGATCCGTGAATG 59.737 52.381 0.00 0.00 0.00 2.67
2370 2478 2.124507 CTCCTCCTTTGGGTGCCGAA 62.125 60.000 0.00 0.00 0.00 4.30
2379 2487 3.786635 CGAACTATGTCCTCCTCCTTTG 58.213 50.000 0.00 0.00 0.00 2.77
2407 2520 9.799106 AGTAGAAAGATGAAGAAAAATGGAAGA 57.201 29.630 0.00 0.00 0.00 2.87
2531 2656 3.995048 GTGAGGAGTGTAAAGCCTTGTAC 59.005 47.826 0.00 0.00 30.70 2.90
2559 2691 8.086522 ACTATAGTCGTCAAGAGCTTTGTTAAA 58.913 33.333 0.00 0.00 0.00 1.52
2730 2865 1.671054 AACAGCAACGCGTAGGCAT 60.671 52.632 29.65 18.44 39.92 4.40
2739 2874 2.726912 CAAGCGGCAACAGCAACG 60.727 61.111 1.45 0.00 38.34 4.10
2836 3143 2.662070 AATGACCCCGTACCCCGTG 61.662 63.158 0.00 0.00 33.66 4.94
2844 3151 1.134401 CATCACTAGCAATGACCCCGT 60.134 52.381 0.00 0.00 0.00 5.28
2845 3152 1.134401 ACATCACTAGCAATGACCCCG 60.134 52.381 10.94 0.00 0.00 5.73
2897 3204 2.039084 CTCCAAATATCCTTCCCCTCCG 59.961 54.545 0.00 0.00 0.00 4.63
2910 3217 8.646900 GGTATTTCCCAATTAATGCTCCAAATA 58.353 33.333 0.00 0.00 0.00 1.40
2952 3259 4.107311 TCATAAATGGGTATTTCCTCCCCC 59.893 45.833 0.00 0.00 42.80 5.40
2953 3260 5.162980 ACTCATAAATGGGTATTTCCTCCCC 60.163 44.000 0.00 0.00 40.35 4.81
2954 3261 5.770162 CACTCATAAATGGGTATTTCCTCCC 59.230 44.000 0.00 0.00 40.10 4.30
2955 3262 6.601332 TCACTCATAAATGGGTATTTCCTCC 58.399 40.000 0.00 0.00 40.10 4.30
2956 3263 8.697507 ATTCACTCATAAATGGGTATTTCCTC 57.302 34.615 0.00 0.00 40.10 3.71
2963 3270 9.701098 GACGTAATATTCACTCATAAATGGGTA 57.299 33.333 0.00 0.00 40.10 3.69
2964 3271 8.208224 TGACGTAATATTCACTCATAAATGGGT 58.792 33.333 0.00 0.00 43.65 4.51
2965 3272 8.601845 TGACGTAATATTCACTCATAAATGGG 57.398 34.615 0.00 0.00 0.00 4.00
3007 3314 3.135712 TGGTCGGTGCTTCATATGGTATT 59.864 43.478 2.13 0.00 0.00 1.89
3027 3334 0.758685 TTGGCTGGTTTGTCCCTTGG 60.759 55.000 0.00 0.00 34.77 3.61
3040 3347 4.276678 CCATATGGTGTCTATGTTTGGCTG 59.723 45.833 14.09 0.00 0.00 4.85
3168 3475 7.285401 GGATTCATGGTTATGGTGTCTATGTTT 59.715 37.037 0.00 0.00 34.97 2.83
3208 3515 4.788075 TCTACTGATTCCCCTTCCAAATCA 59.212 41.667 0.00 0.00 37.14 2.57
3217 3524 1.274416 TGCCCTTCTACTGATTCCCCT 60.274 52.381 0.00 0.00 0.00 4.79
3226 3533 0.766674 TGTGGTGGTGCCCTTCTACT 60.767 55.000 0.00 0.00 36.04 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.