Multiple sequence alignment - TraesCS6A01G009000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G009000 chr6A 100.000 3250 0 0 485 3734 3748531 3745282 0.000000e+00 6002.0
1 TraesCS6A01G009000 chr6A 86.979 576 63 10 1982 2552 3772975 3772407 4.070000e-179 638.0
2 TraesCS6A01G009000 chr6A 85.870 460 42 13 1474 1921 3773531 3773083 5.650000e-128 468.0
3 TraesCS6A01G009000 chr6A 100.000 118 0 0 1 118 3749015 3748898 6.280000e-53 219.0
4 TraesCS6A01G009000 chr6A 89.764 127 13 0 934 1060 3773995 3773869 2.980000e-36 163.0
5 TraesCS6A01G009000 chr6D 94.657 2321 115 6 1295 3611 3739364 3741679 0.000000e+00 3591.0
6 TraesCS6A01G009000 chr6D 92.704 932 55 7 1628 2552 3726626 3727551 0.000000e+00 1332.0
7 TraesCS6A01G009000 chr6D 94.904 726 33 3 519 1242 3738645 3739368 0.000000e+00 1133.0
8 TraesCS6A01G009000 chr6D 85.475 957 64 14 485 1422 3725549 3726449 0.000000e+00 928.0
9 TraesCS6A01G009000 chr6D 85.278 917 99 28 2000 2888 3763844 3764752 0.000000e+00 913.0
10 TraesCS6A01G009000 chr6D 85.185 648 69 16 1989 2618 4721467 4720829 1.130000e-179 640.0
11 TraesCS6A01G009000 chr6D 85.588 451 51 8 1474 1921 4722020 4721581 9.450000e-126 460.0
12 TraesCS6A01G009000 chr6D 84.101 434 42 15 1474 1902 3713535 3713946 9.720000e-106 394.0
13 TraesCS6A01G009000 chr6D 96.403 139 4 1 3597 3734 3742574 3742712 1.040000e-55 228.0
14 TraesCS6A01G009000 chr6D 87.402 127 10 1 936 1062 3757098 3757218 1.400000e-29 141.0
15 TraesCS6A01G009000 chr6D 85.271 129 13 3 934 1062 3712909 3713031 1.090000e-25 128.0
16 TraesCS6A01G009000 chr6D 87.324 71 8 1 3068 3137 336996731 336996801 3.090000e-11 80.5
17 TraesCS6A01G009000 chr6D 100.000 36 0 0 740 775 3725929 3725964 2.410000e-07 67.6
18 TraesCS6A01G009000 chr6D 100.000 36 0 0 740 775 3738984 3739019 2.410000e-07 67.6
19 TraesCS6A01G009000 chr6B 86.782 1967 160 38 1214 3111 9079548 9081483 0.000000e+00 2100.0
20 TraesCS6A01G009000 chr6B 84.699 647 64 20 1989 2618 9035574 9036202 6.850000e-172 614.0
21 TraesCS6A01G009000 chr6B 83.945 654 81 14 1982 2618 9059332 9059978 4.130000e-169 604.0
22 TraesCS6A01G009000 chr6B 86.593 455 39 13 1474 1921 9058785 9059224 2.020000e-132 483.0
23 TraesCS6A01G009000 chr6B 84.716 458 49 12 1474 1921 9035015 9035461 4.430000e-119 438.0
24 TraesCS6A01G009000 chr6B 82.672 479 50 9 3146 3621 9081482 9081930 9.720000e-106 394.0
25 TraesCS6A01G009000 chr6B 91.985 262 12 4 883 1135 9079268 9079529 3.550000e-95 359.0
26 TraesCS6A01G009000 chr6B 85.484 248 23 5 609 855 9034166 9034401 2.880000e-61 246.0
27 TraesCS6A01G009000 chr6B 81.597 288 44 3 579 857 9057672 9057959 2.900000e-56 230.0
28 TraesCS6A01G009000 chr6B 91.597 119 8 2 3617 3734 9064751 9064868 2.980000e-36 163.0
29 TraesCS6A01G009000 chr6B 89.147 129 8 1 934 1062 9058002 9058124 4.990000e-34 156.0
30 TraesCS6A01G009000 chr6B 88.710 124 14 0 934 1057 9034446 9034569 6.460000e-33 152.0
31 TraesCS6A01G009000 chr6B 89.831 118 11 1 3617 3734 9047945 9048061 2.320000e-32 150.0
32 TraesCS6A01G009000 chr1B 80.944 572 79 24 1994 2552 51106506 51107060 3.450000e-115 425.0
33 TraesCS6A01G009000 chr1B 90.909 66 4 2 3079 3143 433138156 433138092 1.850000e-13 87.9
34 TraesCS6A01G009000 chrUn 83.871 434 44 15 1474 1902 306428747 306429159 1.260000e-104 390.0
35 TraesCS6A01G009000 chrUn 85.271 129 13 3 934 1062 306428121 306428243 1.090000e-25 128.0
36 TraesCS6A01G009000 chrUn 83.529 85 14 0 3059 3143 296164982 296164898 3.090000e-11 80.5
37 TraesCS6A01G009000 chr1D 79.505 566 89 22 1994 2550 33639646 33640193 9.790000e-101 377.0
38 TraesCS6A01G009000 chr1D 84.807 362 37 10 1543 1893 33639290 33639644 7.680000e-92 348.0
39 TraesCS6A01G009000 chr1D 100.000 28 0 0 3430 3457 363584119 363584146 7.000000e-03 52.8
40 TraesCS6A01G009000 chr2B 93.220 59 4 0 3083 3141 105850054 105849996 1.850000e-13 87.9
41 TraesCS6A01G009000 chr5A 93.103 58 4 0 3086 3143 698464891 698464948 6.640000e-13 86.1
42 TraesCS6A01G009000 chr5A 100.000 30 0 0 3425 3454 569465513 569465542 5.210000e-04 56.5
43 TraesCS6A01G009000 chr5D 91.667 60 5 0 3084 3143 248588782 248588841 2.390000e-12 84.2
44 TraesCS6A01G009000 chr5D 91.667 60 3 2 3079 3137 242015396 242015454 8.600000e-12 82.4
45 TraesCS6A01G009000 chr3D 91.667 60 5 0 3084 3143 560119201 560119142 2.390000e-12 84.2
46 TraesCS6A01G009000 chr4A 89.583 48 4 1 3145 3191 546389157 546389110 4.030000e-05 60.2
47 TraesCS6A01G009000 chr5B 100.000 29 0 0 3426 3454 550195943 550195971 2.000000e-03 54.7
48 TraesCS6A01G009000 chr5B 100.000 28 0 0 3425 3452 72085991 72086018 7.000000e-03 52.8
49 TraesCS6A01G009000 chr7B 100.000 28 0 0 3427 3454 138130152 138130179 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G009000 chr6A 3745282 3749015 3733 True 3110.500000 6002 100.000000 1 3734 2 chr6A.!!$R1 3733
1 TraesCS6A01G009000 chr6A 3772407 3773995 1588 True 423.000000 638 87.537667 934 2552 3 chr6A.!!$R2 1618
2 TraesCS6A01G009000 chr6D 3738645 3742712 4067 False 1254.900000 3591 96.491000 519 3734 4 chr6D.!!$F6 3215
3 TraesCS6A01G009000 chr6D 3763844 3764752 908 False 913.000000 913 85.278000 2000 2888 1 chr6D.!!$F2 888
4 TraesCS6A01G009000 chr6D 3725549 3727551 2002 False 775.866667 1332 92.726333 485 2552 3 chr6D.!!$F5 2067
5 TraesCS6A01G009000 chr6D 4720829 4722020 1191 True 550.000000 640 85.386500 1474 2618 2 chr6D.!!$R1 1144
6 TraesCS6A01G009000 chr6D 3712909 3713946 1037 False 261.000000 394 84.686000 934 1902 2 chr6D.!!$F4 968
7 TraesCS6A01G009000 chr6B 9079268 9081930 2662 False 951.000000 2100 87.146333 883 3621 3 chr6B.!!$F5 2738
8 TraesCS6A01G009000 chr6B 9057672 9059978 2306 False 368.250000 604 85.320500 579 2618 4 chr6B.!!$F4 2039
9 TraesCS6A01G009000 chr6B 9034166 9036202 2036 False 362.500000 614 85.902250 609 2618 4 chr6B.!!$F3 2009
10 TraesCS6A01G009000 chr1B 51106506 51107060 554 False 425.000000 425 80.944000 1994 2552 1 chr1B.!!$F1 558
11 TraesCS6A01G009000 chrUn 306428121 306429159 1038 False 259.000000 390 84.571000 934 1902 2 chrUn.!!$F1 968
12 TraesCS6A01G009000 chr1D 33639290 33640193 903 False 362.500000 377 82.156000 1543 2550 2 chr1D.!!$F2 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.107214 AGAGAGGACGAGAGCTGAGG 60.107 60.0 0.0 0.00 0.00 3.86 F
29 30 0.107410 GAGAGGACGAGAGCTGAGGA 60.107 60.0 0.0 0.00 0.00 3.71 F
36 37 0.307453 CGAGAGCTGAGGACTCATCG 59.693 60.0 2.0 5.67 39.13 3.84 F
1452 1807 0.478072 TGGTGGCAAGTGAGGATTGT 59.522 50.0 0.0 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1817 0.036388 CCCCACTTAGCGAGCTTTCA 60.036 55.000 1.86 0.0 0.00 2.69 R
1847 2345 3.005897 AGGTACATGACGATGTAGATGGC 59.994 47.826 0.00 0.0 44.16 4.40 R
2193 2753 4.970662 AAGAATCAATCATGGACCAACG 57.029 40.909 0.00 0.0 0.00 4.10 R
3143 3831 0.454285 AACGCGCATCACCGAAAATG 60.454 50.000 5.73 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.941453 CGGAAAATGAGAGAGGACGA 57.059 50.000 0.00 0.00 0.00 4.20
20 21 2.803451 CGGAAAATGAGAGAGGACGAG 58.197 52.381 0.00 0.00 0.00 4.18
21 22 2.423892 CGGAAAATGAGAGAGGACGAGA 59.576 50.000 0.00 0.00 0.00 4.04
22 23 3.488384 CGGAAAATGAGAGAGGACGAGAG 60.488 52.174 0.00 0.00 0.00 3.20
23 24 3.443976 GAAAATGAGAGAGGACGAGAGC 58.556 50.000 0.00 0.00 0.00 4.09
24 25 2.435372 AATGAGAGAGGACGAGAGCT 57.565 50.000 0.00 0.00 0.00 4.09
25 26 1.679139 ATGAGAGAGGACGAGAGCTG 58.321 55.000 0.00 0.00 0.00 4.24
26 27 0.615850 TGAGAGAGGACGAGAGCTGA 59.384 55.000 0.00 0.00 0.00 4.26
27 28 1.299541 GAGAGAGGACGAGAGCTGAG 58.700 60.000 0.00 0.00 0.00 3.35
28 29 0.107214 AGAGAGGACGAGAGCTGAGG 60.107 60.000 0.00 0.00 0.00 3.86
29 30 0.107410 GAGAGGACGAGAGCTGAGGA 60.107 60.000 0.00 0.00 0.00 3.71
30 31 0.393808 AGAGGACGAGAGCTGAGGAC 60.394 60.000 0.00 0.00 0.00 3.85
31 32 0.393808 GAGGACGAGAGCTGAGGACT 60.394 60.000 0.00 0.00 0.00 3.85
32 33 0.393808 AGGACGAGAGCTGAGGACTC 60.394 60.000 0.00 0.00 0.00 3.36
33 34 0.678366 GGACGAGAGCTGAGGACTCA 60.678 60.000 0.00 1.61 36.58 3.41
34 35 1.388547 GACGAGAGCTGAGGACTCAT 58.611 55.000 2.00 0.00 39.13 2.90
35 36 1.333619 GACGAGAGCTGAGGACTCATC 59.666 57.143 2.00 0.00 39.13 2.92
36 37 0.307453 CGAGAGCTGAGGACTCATCG 59.693 60.000 2.00 5.67 39.13 3.84
37 38 0.667993 GAGAGCTGAGGACTCATCGG 59.332 60.000 2.00 0.00 39.13 4.18
39 40 2.279120 GCTGAGGACTCATCGGCG 60.279 66.667 8.69 0.00 39.15 6.46
40 41 2.415010 CTGAGGACTCATCGGCGG 59.585 66.667 7.21 0.00 39.13 6.13
41 42 3.144120 CTGAGGACTCATCGGCGGG 62.144 68.421 7.21 0.00 39.13 6.13
42 43 3.917760 GAGGACTCATCGGCGGGG 61.918 72.222 7.21 0.00 0.00 5.73
43 44 4.458829 AGGACTCATCGGCGGGGA 62.459 66.667 7.21 3.95 0.00 4.81
44 45 3.917760 GGACTCATCGGCGGGGAG 61.918 72.222 21.39 21.39 34.85 4.30
45 46 3.917760 GACTCATCGGCGGGGAGG 61.918 72.222 24.81 12.33 32.98 4.30
66 67 3.828023 GTGGGGTGGGGTGGTGTT 61.828 66.667 0.00 0.00 0.00 3.32
67 68 3.826822 TGGGGTGGGGTGGTGTTG 61.827 66.667 0.00 0.00 0.00 3.33
68 69 4.614036 GGGGTGGGGTGGTGTTGG 62.614 72.222 0.00 0.00 0.00 3.77
69 70 4.614036 GGGTGGGGTGGTGTTGGG 62.614 72.222 0.00 0.00 0.00 4.12
70 71 3.828023 GGTGGGGTGGTGTTGGGT 61.828 66.667 0.00 0.00 0.00 4.51
71 72 2.520741 GTGGGGTGGTGTTGGGTG 60.521 66.667 0.00 0.00 0.00 4.61
72 73 2.696504 TGGGGTGGTGTTGGGTGA 60.697 61.111 0.00 0.00 0.00 4.02
73 74 2.317378 TGGGGTGGTGTTGGGTGAA 61.317 57.895 0.00 0.00 0.00 3.18
74 75 1.075896 GGGGTGGTGTTGGGTGAAA 60.076 57.895 0.00 0.00 0.00 2.69
75 76 1.396607 GGGGTGGTGTTGGGTGAAAC 61.397 60.000 0.00 0.00 0.00 2.78
76 77 0.684805 GGGTGGTGTTGGGTGAAACA 60.685 55.000 0.00 0.00 39.98 2.83
77 78 1.187087 GGTGGTGTTGGGTGAAACAA 58.813 50.000 0.00 0.00 41.52 2.83
78 79 1.760029 GGTGGTGTTGGGTGAAACAAT 59.240 47.619 0.00 0.00 41.52 2.71
79 80 2.482839 GGTGGTGTTGGGTGAAACAATG 60.483 50.000 0.00 0.00 41.52 2.82
80 81 1.759445 TGGTGTTGGGTGAAACAATGG 59.241 47.619 0.00 0.00 41.52 3.16
81 82 1.540146 GGTGTTGGGTGAAACAATGGC 60.540 52.381 0.00 0.00 41.52 4.40
82 83 1.137872 GTGTTGGGTGAAACAATGGCA 59.862 47.619 0.00 0.00 41.52 4.92
83 84 1.833630 TGTTGGGTGAAACAATGGCAA 59.166 42.857 0.00 0.00 39.98 4.52
84 85 2.237143 TGTTGGGTGAAACAATGGCAAA 59.763 40.909 0.00 0.00 39.98 3.68
85 86 3.118112 TGTTGGGTGAAACAATGGCAAAT 60.118 39.130 0.00 0.00 39.98 2.32
86 87 4.101585 TGTTGGGTGAAACAATGGCAAATA 59.898 37.500 0.00 0.00 39.98 1.40
87 88 5.221803 TGTTGGGTGAAACAATGGCAAATAT 60.222 36.000 0.00 0.00 39.98 1.28
88 89 5.495926 TGGGTGAAACAATGGCAAATATT 57.504 34.783 0.00 0.00 39.98 1.28
89 90 5.243981 TGGGTGAAACAATGGCAAATATTG 58.756 37.500 0.00 0.00 39.98 1.90
99 100 8.086851 ACAATGGCAAATATTGTTTCAAGTTC 57.913 30.769 0.00 0.00 44.04 3.01
100 101 7.714377 ACAATGGCAAATATTGTTTCAAGTTCA 59.286 29.630 0.00 0.00 44.04 3.18
101 102 8.723311 CAATGGCAAATATTGTTTCAAGTTCAT 58.277 29.630 0.00 0.00 32.30 2.57
102 103 8.851541 ATGGCAAATATTGTTTCAAGTTCATT 57.148 26.923 0.00 0.00 0.00 2.57
103 104 8.309163 TGGCAAATATTGTTTCAAGTTCATTC 57.691 30.769 0.00 0.00 0.00 2.67
104 105 8.149647 TGGCAAATATTGTTTCAAGTTCATTCT 58.850 29.630 0.00 0.00 0.00 2.40
105 106 9.638239 GGCAAATATTGTTTCAAGTTCATTCTA 57.362 29.630 0.00 0.00 0.00 2.10
110 111 6.539649 TTGTTTCAAGTTCATTCTAGGTCG 57.460 37.500 0.00 0.00 0.00 4.79
111 112 5.607477 TGTTTCAAGTTCATTCTAGGTCGT 58.393 37.500 0.00 0.00 0.00 4.34
112 113 6.751157 TGTTTCAAGTTCATTCTAGGTCGTA 58.249 36.000 0.00 0.00 0.00 3.43
113 114 7.211573 TGTTTCAAGTTCATTCTAGGTCGTAA 58.788 34.615 0.00 0.00 0.00 3.18
114 115 7.170320 TGTTTCAAGTTCATTCTAGGTCGTAAC 59.830 37.037 0.00 0.00 0.00 2.50
115 116 5.717119 TCAAGTTCATTCTAGGTCGTAACC 58.283 41.667 0.00 0.00 46.87 2.85
541 544 2.167693 TGAGCTGGTGTTACCGGATAAG 59.832 50.000 9.46 0.00 44.56 1.73
542 545 2.483188 GAGCTGGTGTTACCGGATAAGG 60.483 54.545 9.46 0.00 44.56 2.69
544 547 6.760290 GAGCTGGTGTTACCGGATAAGGTC 62.760 54.167 9.46 6.95 44.56 3.85
554 557 3.056322 ACCGGATAAGGTCAAGTGTACAC 60.056 47.826 18.56 18.56 41.46 2.90
555 558 3.518590 CGGATAAGGTCAAGTGTACACC 58.481 50.000 22.28 6.87 0.00 4.16
563 567 4.141251 AGGTCAAGTGTACACCATTTTCCT 60.141 41.667 22.28 17.74 31.99 3.36
567 571 7.360361 GTCAAGTGTACACCATTTTCCTTAAG 58.640 38.462 22.28 0.00 0.00 1.85
638 642 2.224079 ACTTCGTGTCATGCATGTTGAC 59.776 45.455 25.43 18.02 43.04 3.18
652 656 4.332543 GCATGTTGACGATTATCTTGTCCA 59.667 41.667 0.00 0.00 37.45 4.02
732 742 4.563580 GGAGTCACACACCATAAGACATGT 60.564 45.833 0.00 0.00 0.00 3.21
875 894 2.292828 TTTTGGCTTCCTTGCTAGCT 57.707 45.000 17.23 0.00 37.54 3.32
879 898 1.759445 TGGCTTCCTTGCTAGCTCTAG 59.241 52.381 17.23 10.31 37.54 2.43
880 899 1.069978 GGCTTCCTTGCTAGCTCTAGG 59.930 57.143 17.23 18.37 37.54 3.02
1139 1282 9.605955 CATTCTCGTTTCACAATATGTTTTACA 57.394 29.630 0.00 0.00 0.00 2.41
1176 1328 4.881157 AGGCATTAACTACTTGGGGAAT 57.119 40.909 0.00 0.00 0.00 3.01
1287 1552 2.490718 CCATCCTTCCACTTTTGTCCCA 60.491 50.000 0.00 0.00 0.00 4.37
1293 1558 0.661020 CCACTTTTGTCCCACGTCAC 59.339 55.000 0.00 0.00 0.00 3.67
1296 1561 2.800544 CACTTTTGTCCCACGTCACTAG 59.199 50.000 0.00 0.00 0.00 2.57
1384 1730 2.276201 GTTGGAGGTGGCAAACAAAAC 58.724 47.619 0.00 0.00 0.00 2.43
1422 1777 5.325239 AGCAAGATGTAAACTAAAGGGCTT 58.675 37.500 0.00 0.00 0.00 4.35
1423 1778 5.416013 AGCAAGATGTAAACTAAAGGGCTTC 59.584 40.000 0.00 0.00 0.00 3.86
1424 1779 5.183140 GCAAGATGTAAACTAAAGGGCTTCA 59.817 40.000 0.00 0.00 0.00 3.02
1425 1780 6.294508 GCAAGATGTAAACTAAAGGGCTTCAA 60.295 38.462 0.00 0.00 0.00 2.69
1426 1781 7.577616 GCAAGATGTAAACTAAAGGGCTTCAAT 60.578 37.037 0.00 0.00 0.00 2.57
1427 1782 7.631717 AGATGTAAACTAAAGGGCTTCAATC 57.368 36.000 0.00 0.00 0.00 2.67
1428 1783 6.603599 AGATGTAAACTAAAGGGCTTCAATCC 59.396 38.462 0.00 0.00 0.00 3.01
1429 1784 5.636123 TGTAAACTAAAGGGCTTCAATCCA 58.364 37.500 0.00 0.00 0.00 3.41
1430 1785 6.071984 TGTAAACTAAAGGGCTTCAATCCAA 58.928 36.000 0.00 0.00 0.00 3.53
1431 1786 6.723977 TGTAAACTAAAGGGCTTCAATCCAAT 59.276 34.615 0.00 0.00 0.00 3.16
1432 1787 7.891183 TGTAAACTAAAGGGCTTCAATCCAATA 59.109 33.333 0.00 0.00 0.00 1.90
1433 1788 7.978099 AAACTAAAGGGCTTCAATCCAATAT 57.022 32.000 0.00 0.00 0.00 1.28
1434 1789 6.966534 ACTAAAGGGCTTCAATCCAATATG 57.033 37.500 0.00 0.00 0.00 1.78
1435 1790 5.835280 ACTAAAGGGCTTCAATCCAATATGG 59.165 40.000 0.00 0.00 39.43 2.74
1436 1791 3.979501 AGGGCTTCAATCCAATATGGT 57.020 42.857 0.00 0.00 39.03 3.55
1437 1792 3.569491 AGGGCTTCAATCCAATATGGTG 58.431 45.455 0.00 0.00 39.03 4.17
1438 1793 2.629617 GGGCTTCAATCCAATATGGTGG 59.370 50.000 0.00 0.00 39.03 4.61
1439 1794 2.036346 GGCTTCAATCCAATATGGTGGC 59.964 50.000 0.00 0.00 39.03 5.01
1440 1795 2.694628 GCTTCAATCCAATATGGTGGCA 59.305 45.455 0.00 0.00 39.03 4.92
1441 1796 3.132646 GCTTCAATCCAATATGGTGGCAA 59.867 43.478 0.00 0.00 39.03 4.52
1442 1797 4.738541 GCTTCAATCCAATATGGTGGCAAG 60.739 45.833 0.00 0.00 39.03 4.01
1443 1798 3.979911 TCAATCCAATATGGTGGCAAGT 58.020 40.909 0.00 0.00 39.03 3.16
1444 1799 3.700539 TCAATCCAATATGGTGGCAAGTG 59.299 43.478 0.00 0.00 39.03 3.16
1445 1800 3.668141 ATCCAATATGGTGGCAAGTGA 57.332 42.857 0.00 0.00 39.03 3.41
1446 1801 3.003394 TCCAATATGGTGGCAAGTGAG 57.997 47.619 0.00 0.00 39.03 3.51
1447 1802 2.026641 CCAATATGGTGGCAAGTGAGG 58.973 52.381 0.00 0.00 31.35 3.86
1448 1803 2.357050 CCAATATGGTGGCAAGTGAGGA 60.357 50.000 0.00 0.00 31.35 3.71
1449 1804 3.559069 CAATATGGTGGCAAGTGAGGAT 58.441 45.455 0.00 0.00 0.00 3.24
1450 1805 3.956199 CAATATGGTGGCAAGTGAGGATT 59.044 43.478 0.00 0.00 0.00 3.01
1451 1806 1.843368 ATGGTGGCAAGTGAGGATTG 58.157 50.000 0.00 0.00 0.00 2.67
1452 1807 0.478072 TGGTGGCAAGTGAGGATTGT 59.522 50.000 0.00 0.00 0.00 2.71
1453 1808 1.702401 TGGTGGCAAGTGAGGATTGTA 59.298 47.619 0.00 0.00 0.00 2.41
1454 1809 2.084546 GGTGGCAAGTGAGGATTGTAC 58.915 52.381 0.00 0.00 0.00 2.90
1455 1810 2.552155 GGTGGCAAGTGAGGATTGTACA 60.552 50.000 0.00 0.00 0.00 2.90
1456 1811 3.347216 GTGGCAAGTGAGGATTGTACAT 58.653 45.455 0.00 0.00 0.00 2.29
1457 1812 3.127548 GTGGCAAGTGAGGATTGTACATG 59.872 47.826 0.00 0.00 0.00 3.21
1458 1813 3.244875 TGGCAAGTGAGGATTGTACATGT 60.245 43.478 2.69 2.69 0.00 3.21
1459 1814 3.758554 GGCAAGTGAGGATTGTACATGTT 59.241 43.478 2.30 0.00 0.00 2.71
1460 1815 4.941263 GGCAAGTGAGGATTGTACATGTTA 59.059 41.667 2.30 0.00 0.00 2.41
1461 1816 5.163754 GGCAAGTGAGGATTGTACATGTTAC 60.164 44.000 2.30 0.95 0.00 2.50
1462 1817 5.643777 GCAAGTGAGGATTGTACATGTTACT 59.356 40.000 2.30 0.00 0.00 2.24
1847 2345 3.257561 CCGGCTGCGTCATCGAAG 61.258 66.667 0.00 0.00 44.89 3.79
2193 2753 3.202595 TCCTCCCTCTAGAGTGGTAGTTC 59.797 52.174 18.42 0.00 31.53 3.01
2478 3124 1.000896 CATCCTGGGGTTCGCCTTT 60.001 57.895 7.39 0.00 37.45 3.11
2502 3148 2.264455 GTGATCCAGATGGGGCTCTAT 58.736 52.381 0.00 0.00 37.22 1.98
2524 3170 0.108186 CCTCTACTGCAATGCCACGA 60.108 55.000 1.53 0.00 0.00 4.35
2597 3255 1.032114 GTTGCTAAGCTCGGCCCAAT 61.032 55.000 0.00 0.00 0.00 3.16
2622 3280 1.202580 ACTATCGAGCTCAACATGCCC 60.203 52.381 15.40 0.00 0.00 5.36
2658 3316 3.376234 CACCTACGAAGGAGAACATCGTA 59.624 47.826 7.01 7.01 46.86 3.43
2743 3401 0.109342 GCATGTATAGGCAGGCAGGT 59.891 55.000 0.00 0.00 44.43 4.00
2861 3526 1.614241 GGCTCCGGTAGTGTCATGGT 61.614 60.000 0.00 0.00 0.00 3.55
2862 3527 0.249398 GCTCCGGTAGTGTCATGGTT 59.751 55.000 0.00 0.00 0.00 3.67
2897 3562 2.273449 CCATGACAGGCAGGGGTC 59.727 66.667 0.00 0.00 44.61 4.46
2928 3593 1.293924 CTAGGGAGACAAAGCATGCG 58.706 55.000 13.01 0.00 0.00 4.73
2968 3656 6.313411 CCGTTAATGTTCCATTTCATGCAAAT 59.687 34.615 0.00 0.00 34.79 2.32
3002 3690 2.132762 AGTTGTTCGTCGTAAGGCTTG 58.867 47.619 10.69 0.00 42.28 4.01
3016 3704 3.942130 AGGCTTGTTTTATTCTGCCAC 57.058 42.857 0.00 0.00 42.46 5.01
3113 3801 2.446435 ACATGTGGTTGGATGGTTAGC 58.554 47.619 0.00 0.00 0.00 3.09
3115 3803 2.198827 TGTGGTTGGATGGTTAGCAG 57.801 50.000 0.00 0.00 0.00 4.24
3126 3814 0.828677 GGTTAGCAGGACGGTGGTAT 59.171 55.000 0.00 0.00 30.74 2.73
3130 3818 3.103091 GCAGGACGGTGGTATCCCC 62.103 68.421 0.00 0.00 35.38 4.81
3169 3857 2.027073 GTGATGCGCGTTCAGTGGA 61.027 57.895 8.43 0.00 34.51 4.02
3219 3908 1.135575 GCACTGAATCCGCTTTTCCAG 60.136 52.381 0.00 0.00 0.00 3.86
3292 3981 6.237901 TCTCTTTAGTGGAAAGCAAGCAATA 58.762 36.000 0.00 0.00 43.78 1.90
3301 3990 0.179156 AGCAAGCAATACGCATGTGC 60.179 50.000 6.08 1.15 46.13 4.57
3336 4025 4.415783 GGGCTTTATATGGGCCGG 57.584 61.111 0.00 0.00 46.10 6.13
3349 4038 2.440065 GCCGGAATGGGATGTGCA 60.440 61.111 5.05 0.00 38.63 4.57
3471 4162 5.602628 AGATGGAAGATACTTTCGCCTAAC 58.397 41.667 0.00 0.00 0.00 2.34
3528 4220 6.204882 ACACTTAAAACAAGGGAAATCGAGAG 59.795 38.462 0.00 0.00 0.00 3.20
3578 4270 0.036164 TCATTGTTGGGTAGCGCTGT 59.964 50.000 22.90 0.00 0.00 4.40
3615 5218 7.309194 GCACTGTTGGTTCCTTGATAAAATACT 60.309 37.037 0.00 0.00 0.00 2.12
3710 5313 1.878734 AGTAGTAGGGCGCGTAATCTC 59.121 52.381 8.43 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.736740 GCTCTCGTCCTCTCTCATTTTCC 60.737 52.174 0.00 0.00 0.00 3.13
2 3 3.130340 AGCTCTCGTCCTCTCTCATTTTC 59.870 47.826 0.00 0.00 0.00 2.29
4 5 2.426738 CAGCTCTCGTCCTCTCTCATTT 59.573 50.000 0.00 0.00 0.00 2.32
5 6 2.023673 CAGCTCTCGTCCTCTCTCATT 58.976 52.381 0.00 0.00 0.00 2.57
6 7 1.211703 TCAGCTCTCGTCCTCTCTCAT 59.788 52.381 0.00 0.00 0.00 2.90
7 8 0.615850 TCAGCTCTCGTCCTCTCTCA 59.384 55.000 0.00 0.00 0.00 3.27
8 9 1.299541 CTCAGCTCTCGTCCTCTCTC 58.700 60.000 0.00 0.00 0.00 3.20
9 10 0.107214 CCTCAGCTCTCGTCCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
10 11 0.107410 TCCTCAGCTCTCGTCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
11 12 0.393808 GTCCTCAGCTCTCGTCCTCT 60.394 60.000 0.00 0.00 0.00 3.69
12 13 0.393808 AGTCCTCAGCTCTCGTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
13 14 0.393808 GAGTCCTCAGCTCTCGTCCT 60.394 60.000 0.00 0.00 0.00 3.85
14 15 0.678366 TGAGTCCTCAGCTCTCGTCC 60.678 60.000 0.00 0.00 34.14 4.79
15 16 1.333619 GATGAGTCCTCAGCTCTCGTC 59.666 57.143 5.34 5.99 43.61 4.20
16 17 1.388547 GATGAGTCCTCAGCTCTCGT 58.611 55.000 5.34 0.00 43.61 4.18
17 18 0.307453 CGATGAGTCCTCAGCTCTCG 59.693 60.000 10.48 7.19 43.26 4.04
18 19 0.667993 CCGATGAGTCCTCAGCTCTC 59.332 60.000 10.48 0.00 43.26 3.20
19 20 1.391157 GCCGATGAGTCCTCAGCTCT 61.391 60.000 10.48 0.00 43.26 4.09
20 21 1.067250 GCCGATGAGTCCTCAGCTC 59.933 63.158 10.48 0.26 43.26 4.09
21 22 2.780094 CGCCGATGAGTCCTCAGCT 61.780 63.158 10.48 0.00 43.26 4.24
22 23 2.279120 CGCCGATGAGTCCTCAGC 60.279 66.667 2.51 2.51 43.61 4.26
23 24 2.415010 CCGCCGATGAGTCCTCAG 59.585 66.667 3.10 0.00 43.61 3.35
24 25 3.147595 CCCGCCGATGAGTCCTCA 61.148 66.667 0.00 0.00 44.59 3.86
25 26 3.917760 CCCCGCCGATGAGTCCTC 61.918 72.222 0.00 0.00 0.00 3.71
26 27 4.458829 TCCCCGCCGATGAGTCCT 62.459 66.667 0.00 0.00 0.00 3.85
27 28 3.917760 CTCCCCGCCGATGAGTCC 61.918 72.222 0.00 0.00 0.00 3.85
28 29 3.917760 CCTCCCCGCCGATGAGTC 61.918 72.222 0.00 0.00 0.00 3.36
49 50 3.828023 AACACCACCCCACCCCAC 61.828 66.667 0.00 0.00 0.00 4.61
50 51 3.826822 CAACACCACCCCACCCCA 61.827 66.667 0.00 0.00 0.00 4.96
51 52 4.614036 CCAACACCACCCCACCCC 62.614 72.222 0.00 0.00 0.00 4.95
52 53 4.614036 CCCAACACCACCCCACCC 62.614 72.222 0.00 0.00 0.00 4.61
53 54 3.828023 ACCCAACACCACCCCACC 61.828 66.667 0.00 0.00 0.00 4.61
54 55 2.520741 CACCCAACACCACCCCAC 60.521 66.667 0.00 0.00 0.00 4.61
55 56 1.875422 TTTCACCCAACACCACCCCA 61.875 55.000 0.00 0.00 0.00 4.96
56 57 1.075896 TTTCACCCAACACCACCCC 60.076 57.895 0.00 0.00 0.00 4.95
57 58 0.684805 TGTTTCACCCAACACCACCC 60.685 55.000 0.00 0.00 31.48 4.61
58 59 1.187087 TTGTTTCACCCAACACCACC 58.813 50.000 0.00 0.00 36.36 4.61
59 60 2.482839 CCATTGTTTCACCCAACACCAC 60.483 50.000 0.00 0.00 36.36 4.16
60 61 1.759445 CCATTGTTTCACCCAACACCA 59.241 47.619 0.00 0.00 36.36 4.17
61 62 1.540146 GCCATTGTTTCACCCAACACC 60.540 52.381 0.00 0.00 36.36 4.16
62 63 1.137872 TGCCATTGTTTCACCCAACAC 59.862 47.619 0.00 0.00 36.36 3.32
63 64 1.489481 TGCCATTGTTTCACCCAACA 58.511 45.000 0.00 0.00 34.76 3.33
64 65 2.611225 TTGCCATTGTTTCACCCAAC 57.389 45.000 0.00 0.00 0.00 3.77
65 66 3.853355 ATTTGCCATTGTTTCACCCAA 57.147 38.095 0.00 0.00 0.00 4.12
66 67 5.221803 ACAATATTTGCCATTGTTTCACCCA 60.222 36.000 0.00 0.00 42.52 4.51
67 68 5.244755 ACAATATTTGCCATTGTTTCACCC 58.755 37.500 0.00 0.00 42.52 4.61
74 75 7.714377 TGAACTTGAAACAATATTTGCCATTGT 59.286 29.630 0.00 0.00 46.05 2.71
75 76 8.085720 TGAACTTGAAACAATATTTGCCATTG 57.914 30.769 0.00 0.00 38.95 2.82
76 77 8.851541 ATGAACTTGAAACAATATTTGCCATT 57.148 26.923 0.00 0.00 0.00 3.16
77 78 8.851541 AATGAACTTGAAACAATATTTGCCAT 57.148 26.923 0.00 0.00 0.00 4.40
78 79 8.149647 AGAATGAACTTGAAACAATATTTGCCA 58.850 29.630 0.00 0.00 0.00 4.92
79 80 8.538409 AGAATGAACTTGAAACAATATTTGCC 57.462 30.769 0.00 0.00 0.00 4.52
84 85 8.883731 CGACCTAGAATGAACTTGAAACAATAT 58.116 33.333 0.00 0.00 0.00 1.28
85 86 7.876068 ACGACCTAGAATGAACTTGAAACAATA 59.124 33.333 0.00 0.00 0.00 1.90
86 87 6.710744 ACGACCTAGAATGAACTTGAAACAAT 59.289 34.615 0.00 0.00 0.00 2.71
87 88 6.053005 ACGACCTAGAATGAACTTGAAACAA 58.947 36.000 0.00 0.00 0.00 2.83
88 89 5.607477 ACGACCTAGAATGAACTTGAAACA 58.393 37.500 0.00 0.00 0.00 2.83
89 90 7.359849 GGTTACGACCTAGAATGAACTTGAAAC 60.360 40.741 0.00 0.00 42.99 2.78
90 91 6.647895 GGTTACGACCTAGAATGAACTTGAAA 59.352 38.462 0.00 0.00 42.99 2.69
91 92 6.161381 GGTTACGACCTAGAATGAACTTGAA 58.839 40.000 0.00 0.00 42.99 2.69
92 93 5.244402 TGGTTACGACCTAGAATGAACTTGA 59.756 40.000 0.00 0.00 46.66 3.02
93 94 5.347907 GTGGTTACGACCTAGAATGAACTTG 59.652 44.000 0.00 0.00 46.66 3.16
94 95 5.476614 GTGGTTACGACCTAGAATGAACTT 58.523 41.667 0.00 0.00 46.66 2.66
95 96 5.069501 GTGGTTACGACCTAGAATGAACT 57.930 43.478 0.00 0.00 46.66 3.01
521 524 2.483188 CCTTATCCGGTAACACCAGCTC 60.483 54.545 0.00 0.00 38.47 4.09
541 544 4.142038 AGGAAAATGGTGTACACTTGACC 58.858 43.478 24.55 18.50 0.00 4.02
542 545 5.767816 AAGGAAAATGGTGTACACTTGAC 57.232 39.130 24.55 9.30 0.00 3.18
544 547 7.504924 TCTTAAGGAAAATGGTGTACACTTG 57.495 36.000 24.55 0.04 0.00 3.16
554 557 6.494491 TGGCATGGATATCTTAAGGAAAATGG 59.506 38.462 1.85 0.00 0.00 3.16
555 558 7.309621 CCTGGCATGGATATCTTAAGGAAAATG 60.310 40.741 1.85 1.79 0.00 2.32
563 567 6.012113 CCAATTCCTGGCATGGATATCTTAA 58.988 40.000 2.05 0.00 38.76 1.85
567 571 3.094572 CCCAATTCCTGGCATGGATATC 58.905 50.000 5.65 0.00 44.90 1.63
638 642 7.957484 CGCCTTAAATAATGGACAAGATAATCG 59.043 37.037 0.00 0.00 0.00 3.34
652 656 3.496331 CCATGGGACCGCCTTAAATAAT 58.504 45.455 2.85 0.00 0.00 1.28
727 731 3.320826 GGAAGCCAAAAAGGTGTACATGT 59.679 43.478 2.69 2.69 40.61 3.21
732 742 2.364002 GCAAGGAAGCCAAAAAGGTGTA 59.636 45.455 0.00 0.00 40.61 2.90
875 894 3.778629 GAGGTTGGATGGGTTTACCTAGA 59.221 47.826 0.00 0.00 39.25 2.43
879 898 2.891191 TGAGGTTGGATGGGTTTACC 57.109 50.000 0.00 0.00 40.81 2.85
880 899 3.089284 CCTTGAGGTTGGATGGGTTTAC 58.911 50.000 0.00 0.00 0.00 2.01
1100 1243 8.685536 GTGAAACGAGAATGAAAAGAAAATGAG 58.314 33.333 0.00 0.00 0.00 2.90
1287 1552 4.557205 GACCTTCAACAATCTAGTGACGT 58.443 43.478 0.00 0.00 0.00 4.34
1384 1730 1.541588 CTTGCTTTCCCTTTTCTCCCG 59.458 52.381 0.00 0.00 0.00 5.14
1422 1777 3.700539 CACTTGCCACCATATTGGATTGA 59.299 43.478 0.00 0.00 40.96 2.57
1423 1778 3.700539 TCACTTGCCACCATATTGGATTG 59.299 43.478 0.00 0.00 40.96 2.67
1424 1779 3.956199 CTCACTTGCCACCATATTGGATT 59.044 43.478 0.00 0.00 40.96 3.01
1425 1780 3.559069 CTCACTTGCCACCATATTGGAT 58.441 45.455 0.00 0.00 40.96 3.41
1426 1781 2.357050 CCTCACTTGCCACCATATTGGA 60.357 50.000 0.00 0.00 40.96 3.53
1427 1782 2.026641 CCTCACTTGCCACCATATTGG 58.973 52.381 0.00 0.00 45.02 3.16
1428 1783 3.003394 TCCTCACTTGCCACCATATTG 57.997 47.619 0.00 0.00 0.00 1.90
1429 1784 3.956199 CAATCCTCACTTGCCACCATATT 59.044 43.478 0.00 0.00 0.00 1.28
1430 1785 3.053395 ACAATCCTCACTTGCCACCATAT 60.053 43.478 0.00 0.00 0.00 1.78
1431 1786 2.308570 ACAATCCTCACTTGCCACCATA 59.691 45.455 0.00 0.00 0.00 2.74
1432 1787 1.076024 ACAATCCTCACTTGCCACCAT 59.924 47.619 0.00 0.00 0.00 3.55
1433 1788 0.478072 ACAATCCTCACTTGCCACCA 59.522 50.000 0.00 0.00 0.00 4.17
1434 1789 2.084546 GTACAATCCTCACTTGCCACC 58.915 52.381 0.00 0.00 0.00 4.61
1435 1790 2.778299 TGTACAATCCTCACTTGCCAC 58.222 47.619 0.00 0.00 0.00 5.01
1436 1791 3.244875 ACATGTACAATCCTCACTTGCCA 60.245 43.478 0.00 0.00 0.00 4.92
1437 1792 3.347216 ACATGTACAATCCTCACTTGCC 58.653 45.455 0.00 0.00 0.00 4.52
1438 1793 5.643777 AGTAACATGTACAATCCTCACTTGC 59.356 40.000 0.00 0.00 0.00 4.01
1439 1794 6.873605 TCAGTAACATGTACAATCCTCACTTG 59.126 38.462 0.00 0.00 0.00 3.16
1440 1795 7.004555 TCAGTAACATGTACAATCCTCACTT 57.995 36.000 0.00 0.00 0.00 3.16
1441 1796 6.605471 TCAGTAACATGTACAATCCTCACT 57.395 37.500 0.00 0.00 0.00 3.41
1442 1797 7.624344 GCTTTCAGTAACATGTACAATCCTCAC 60.624 40.741 0.00 0.00 0.00 3.51
1443 1798 6.371548 GCTTTCAGTAACATGTACAATCCTCA 59.628 38.462 0.00 0.00 0.00 3.86
1444 1799 6.595716 AGCTTTCAGTAACATGTACAATCCTC 59.404 38.462 0.00 0.00 0.00 3.71
1445 1800 6.476378 AGCTTTCAGTAACATGTACAATCCT 58.524 36.000 0.00 0.00 0.00 3.24
1446 1801 6.455646 CGAGCTTTCAGTAACATGTACAATCC 60.456 42.308 0.00 0.00 0.00 3.01
1447 1802 6.470160 CGAGCTTTCAGTAACATGTACAATC 58.530 40.000 0.00 0.00 0.00 2.67
1448 1803 5.163854 GCGAGCTTTCAGTAACATGTACAAT 60.164 40.000 0.00 0.00 0.00 2.71
1449 1804 4.151689 GCGAGCTTTCAGTAACATGTACAA 59.848 41.667 0.00 0.00 0.00 2.41
1450 1805 3.678072 GCGAGCTTTCAGTAACATGTACA 59.322 43.478 0.00 0.00 0.00 2.90
1451 1806 3.927142 AGCGAGCTTTCAGTAACATGTAC 59.073 43.478 0.00 0.00 0.00 2.90
1452 1807 4.188247 AGCGAGCTTTCAGTAACATGTA 57.812 40.909 0.00 0.00 0.00 2.29
1453 1808 3.045601 AGCGAGCTTTCAGTAACATGT 57.954 42.857 0.00 0.00 0.00 3.21
1454 1809 4.627467 ACTTAGCGAGCTTTCAGTAACATG 59.373 41.667 1.86 0.00 0.00 3.21
1455 1810 4.627467 CACTTAGCGAGCTTTCAGTAACAT 59.373 41.667 1.86 0.00 0.00 2.71
1456 1811 3.987868 CACTTAGCGAGCTTTCAGTAACA 59.012 43.478 1.86 0.00 0.00 2.41
1457 1812 3.368236 CCACTTAGCGAGCTTTCAGTAAC 59.632 47.826 1.86 0.00 0.00 2.50
1458 1813 3.585862 CCACTTAGCGAGCTTTCAGTAA 58.414 45.455 1.86 0.00 0.00 2.24
1459 1814 2.094182 CCCACTTAGCGAGCTTTCAGTA 60.094 50.000 1.86 0.00 0.00 2.74
1460 1815 1.338200 CCCACTTAGCGAGCTTTCAGT 60.338 52.381 1.86 0.86 0.00 3.41
1461 1816 1.363744 CCCACTTAGCGAGCTTTCAG 58.636 55.000 1.86 0.22 0.00 3.02
1462 1817 0.036388 CCCCACTTAGCGAGCTTTCA 60.036 55.000 1.86 0.00 0.00 2.69
1847 2345 3.005897 AGGTACATGACGATGTAGATGGC 59.994 47.826 0.00 0.00 44.16 4.40
2193 2753 4.970662 AAGAATCAATCATGGACCAACG 57.029 40.909 0.00 0.00 0.00 4.10
2380 2981 7.741785 TGAGTTAGGAATTGAGAGGTTTTGTA 58.258 34.615 0.00 0.00 0.00 2.41
2423 3065 4.277174 TGCGATTCAACACCAACACTAAAT 59.723 37.500 0.00 0.00 0.00 1.40
2478 3124 1.697394 CCCCATCTGGATCACCCCA 60.697 63.158 0.00 0.00 37.39 4.96
2502 3148 1.077501 GGCATTGCAGTAGAGGGCA 60.078 57.895 11.39 0.00 38.46 5.36
2538 3184 1.911766 TGGTCCGTCCACCTCCTTC 60.912 63.158 0.00 0.00 41.93 3.46
2597 3255 2.375146 TGTTGAGCTCGATAGTAGCCA 58.625 47.619 7.00 0.00 41.02 4.75
2604 3262 3.686622 GGGCATGTTGAGCTCGATA 57.313 52.632 7.00 4.64 0.00 2.92
2678 3336 2.341257 TCTCAACGCTGATCTCTTTGC 58.659 47.619 0.00 0.00 0.00 3.68
2743 3401 1.695239 AGGATCTGGCTGCATGGGA 60.695 57.895 0.50 0.00 0.00 4.37
2808 3471 1.620323 GTCTCAGGCAAGCCCAAAATT 59.380 47.619 7.62 0.00 36.58 1.82
2861 3526 3.961849 TGGCTTAACTGGATGCATACAA 58.038 40.909 13.85 0.00 0.00 2.41
2862 3527 3.643199 TGGCTTAACTGGATGCATACA 57.357 42.857 12.08 12.08 0.00 2.29
2897 3562 1.478510 TCTCCCTAGCTTCTTTGCTCG 59.521 52.381 0.00 0.00 42.97 5.03
2968 3656 5.101628 ACGAACAACTACGAACAGTAACAA 58.898 37.500 0.00 0.00 34.45 2.83
3016 3704 7.957002 ACTGGACAGTGGATACTAATGAATAG 58.043 38.462 3.82 0.00 40.75 1.73
3143 3831 0.454285 AACGCGCATCACCGAAAATG 60.454 50.000 5.73 0.00 0.00 2.32
3200 3889 1.470098 CCTGGAAAAGCGGATTCAGTG 59.530 52.381 0.00 0.00 0.00 3.66
3219 3908 2.354259 CAAGAGGTGAAGTCATGCTCC 58.646 52.381 0.00 0.00 0.00 4.70
3277 3966 1.242989 TGCGTATTGCTTGCTTTCCA 58.757 45.000 0.00 0.00 46.63 3.53
3301 3990 1.812571 CCCGACACATCCAAAAGGAAG 59.187 52.381 0.00 0.00 0.00 3.46
3349 4038 5.521735 GTGAGATGAGTCAGACGCAATAAAT 59.478 40.000 11.34 0.00 30.26 1.40
3471 4162 2.813179 GCCCATTACTGCAGACGCG 61.813 63.158 23.35 3.53 42.97 6.01
3477 4168 4.813235 GGGCGGCCCATTACTGCA 62.813 66.667 32.90 0.00 44.65 4.41
3528 4220 2.238395 AGATCAGTTCCTGCTCCCTTTC 59.762 50.000 0.00 0.00 28.09 2.62
3549 4241 3.184628 ACCCAACAATGAGGAGATCTGA 58.815 45.455 0.00 0.00 0.00 3.27
3615 5218 2.180769 CTGCACACTACGCGCCTA 59.819 61.111 5.73 0.00 0.00 3.93
3700 5303 1.986378 GGATGGAATCGAGATTACGCG 59.014 52.381 3.53 3.53 46.86 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.