Multiple sequence alignment - TraesCS6A01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G008700 chr6A 100.000 4365 0 0 1 4365 3686889 3691253 0.000000e+00 8061
1 TraesCS6A01G008700 chr6A 93.407 91 3 3 2717 2807 1816390 1816303 9.850000e-27 132
2 TraesCS6A01G008700 chr6A 85.577 104 13 2 250 351 1877235 1877132 1.660000e-19 108
3 TraesCS6A01G008700 chr6D 95.940 3522 84 23 883 4365 3821001 3817500 0.000000e+00 5657
4 TraesCS6A01G008700 chr6D 88.876 881 59 8 4 881 3821878 3821034 0.000000e+00 1048
5 TraesCS6A01G008700 chr6D 82.733 666 76 27 2603 3255 2834643 2834004 1.370000e-154 556
6 TraesCS6A01G008700 chr6D 82.771 563 64 15 18 577 2699848 2699316 5.110000e-129 472
7 TraesCS6A01G008700 chr6D 81.073 317 29 11 2094 2407 2834950 2834662 1.580000e-54 224
8 TraesCS6A01G008700 chr6B 94.597 2036 66 18 2366 4365 9098926 9096899 0.000000e+00 3110
9 TraesCS6A01G008700 chr6B 93.308 1868 91 25 500 2338 9100789 9098927 0.000000e+00 2726
10 TraesCS6A01G008700 chr6B 88.000 450 44 6 18 461 9101231 9100786 1.390000e-144 523
11 TraesCS6A01G008700 chr6B 85.714 336 29 12 2568 2900 196481389 196481708 1.940000e-88 337
12 TraesCS6A01G008700 chr6B 85.417 336 30 11 2568 2900 375644334 375644015 9.050000e-87 331
13 TraesCS6A01G008700 chr6B 85.417 336 30 12 2568 2900 393068877 393069196 9.050000e-87 331
14 TraesCS6A01G008700 chr6B 84.000 150 20 3 3242 3391 680478 680623 1.640000e-29 141
15 TraesCS6A01G008700 chr4D 96.886 867 24 3 3499 4365 266757768 266756905 0.000000e+00 1448
16 TraesCS6A01G008700 chr5D 97.083 720 15 4 3648 4365 30064178 30063463 0.000000e+00 1208
17 TraesCS6A01G008700 chr2B 85.398 226 16 9 2568 2792 706089537 706089746 7.350000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G008700 chr6A 3686889 3691253 4364 False 8061.000000 8061 100.000000 1 4365 1 chr6A.!!$F1 4364
1 TraesCS6A01G008700 chr6D 3817500 3821878 4378 True 3352.500000 5657 92.408000 4 4365 2 chr6D.!!$R3 4361
2 TraesCS6A01G008700 chr6D 2699316 2699848 532 True 472.000000 472 82.771000 18 577 1 chr6D.!!$R1 559
3 TraesCS6A01G008700 chr6D 2834004 2834950 946 True 390.000000 556 81.903000 2094 3255 2 chr6D.!!$R2 1161
4 TraesCS6A01G008700 chr6B 9096899 9101231 4332 True 2119.666667 3110 91.968333 18 4365 3 chr6B.!!$R2 4347
5 TraesCS6A01G008700 chr4D 266756905 266757768 863 True 1448.000000 1448 96.886000 3499 4365 1 chr4D.!!$R1 866
6 TraesCS6A01G008700 chr5D 30063463 30064178 715 True 1208.000000 1208 97.083000 3648 4365 1 chr5D.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 81 0.037326 GTGCTGTGTAGTGCTGCCTA 60.037 55.0 0.00 0.0 0.00 3.93 F
187 191 0.106918 TTTGCTTGGAACAGGGACGT 60.107 50.0 0.00 0.0 42.39 4.34 F
487 496 0.179205 GCAATGTGCAGCTCTTCGAC 60.179 55.0 0.00 0.0 44.26 4.20 F
1009 1048 0.324552 TGCAGAATCAATGGGGTGGG 60.325 55.0 0.00 0.0 0.00 4.61 F
1071 1110 0.390340 TGCTCTTCGCTGTGATGACC 60.390 55.0 3.01 0.0 40.11 4.02 F
2558 2607 0.975887 GCCTTGATCTGGGGCAAAAA 59.024 50.0 15.59 0.0 44.69 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1131 0.256752 CAGGGTTCAGGCCATCATCA 59.743 55.000 5.01 0.0 0.00 3.07 R
1097 1136 1.779061 AACGACAGGGTTCAGGCCAT 61.779 55.000 5.01 0.0 0.00 4.40 R
2288 2334 0.912486 AGGTTGGTGGTATCTGAGCC 59.088 55.000 0.00 0.0 0.00 4.70 R
2514 2563 1.819632 CTAACTCGTGGGGCCATGC 60.820 63.158 4.39 0.0 33.28 4.06 R
2638 2688 2.962421 CCCACTCCCTGTAAAGCAAAAA 59.038 45.455 0.00 0.0 0.00 1.94 R
3911 4003 4.077822 AGATGCCAAGAAAGTGGAGAAAG 58.922 43.478 0.00 0.0 41.65 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 0.908198 TTTTGGCTTTTGGGTGCTGT 59.092 45.000 0.00 0.00 0.00 4.40
73 75 1.001378 CTTTTGGGTGCTGTGTAGTGC 60.001 52.381 0.00 0.00 0.00 4.40
79 81 0.037326 GTGCTGTGTAGTGCTGCCTA 60.037 55.000 0.00 0.00 0.00 3.93
145 148 2.101750 TCCTTGTTCGTGCTCAGTTACA 59.898 45.455 0.00 0.00 0.00 2.41
147 150 2.588027 TGTTCGTGCTCAGTTACACA 57.412 45.000 0.00 0.00 36.57 3.72
187 191 0.106918 TTTGCTTGGAACAGGGACGT 60.107 50.000 0.00 0.00 42.39 4.34
202 206 1.272490 GGACGTCATGTGAGGAACAGA 59.728 52.381 18.91 0.00 43.64 3.41
228 233 6.296145 GGATATTGGGAGGTCTTTAGATCAGG 60.296 46.154 0.00 0.00 0.00 3.86
267 272 4.457603 AGCCTATCTTAGAGTATGTGCGAG 59.542 45.833 0.00 0.00 0.00 5.03
368 377 3.135712 TGCTCTGTTTGTGAGAACCCTTA 59.864 43.478 0.00 0.00 33.68 2.69
387 396 9.869757 AACCCTTATATGCTTATGTTTGAAAAC 57.130 29.630 2.46 0.00 39.33 2.43
423 432 4.762289 ATGTTCAGAGTCCAATCTACCC 57.238 45.455 0.00 0.00 0.00 3.69
442 451 2.395690 CGTTGCGACGCATCTTCC 59.604 61.111 25.09 8.45 43.03 3.46
450 459 0.811281 GACGCATCTTCCCCTTTTGG 59.189 55.000 0.00 0.00 39.97 3.28
487 496 0.179205 GCAATGTGCAGCTCTTCGAC 60.179 55.000 0.00 0.00 44.26 4.20
498 507 1.645034 CTCTTCGACGTGATGCCATT 58.355 50.000 0.00 0.00 0.00 3.16
499 508 2.002586 CTCTTCGACGTGATGCCATTT 58.997 47.619 0.00 0.00 0.00 2.32
517 526 9.683870 ATGCCATTTATTTTGGAACATACAAAT 57.316 25.926 0.00 0.00 39.30 2.32
613 622 7.470147 GCACACATAAAGCTAGTAGGTGATCTA 60.470 40.741 22.03 0.00 36.87 1.98
634 643 3.927555 TGCAGTGCAGTAACCCTAC 57.072 52.632 15.37 0.00 33.32 3.18
637 646 2.835156 TGCAGTGCAGTAACCCTACATA 59.165 45.455 15.37 0.00 33.32 2.29
644 653 4.844085 TGCAGTAACCCTACATATAGGCAT 59.156 41.667 0.00 0.00 46.18 4.40
684 693 7.148069 CCCTCAACTATTCCTTGTTTATTCCAC 60.148 40.741 0.00 0.00 0.00 4.02
685 694 7.611855 CCTCAACTATTCCTTGTTTATTCCACT 59.388 37.037 0.00 0.00 0.00 4.00
686 695 9.667107 CTCAACTATTCCTTGTTTATTCCACTA 57.333 33.333 0.00 0.00 0.00 2.74
755 764 4.475016 ACTCACCTTGCCTTTATGTATCCT 59.525 41.667 0.00 0.00 0.00 3.24
774 783 0.840288 TCCCTGCCTGCTCCAGTTAA 60.840 55.000 0.00 0.00 0.00 2.01
779 788 2.821969 CTGCCTGCTCCAGTTAACAATT 59.178 45.455 8.61 0.00 0.00 2.32
780 789 3.230134 TGCCTGCTCCAGTTAACAATTT 58.770 40.909 8.61 0.00 0.00 1.82
783 792 5.303078 TGCCTGCTCCAGTTAACAATTTTTA 59.697 36.000 8.61 0.00 0.00 1.52
824 833 5.494724 AGAATTAGCATTGCTCTCTCACAA 58.505 37.500 15.81 2.12 40.44 3.33
840 849 7.615403 TCTCTCACAAATAAAGCTAGTGACAT 58.385 34.615 0.00 0.00 35.57 3.06
842 851 7.386059 TCTCACAAATAAAGCTAGTGACATGA 58.614 34.615 0.00 0.00 35.57 3.07
844 853 6.371548 TCACAAATAAAGCTAGTGACATGACC 59.628 38.462 0.00 0.00 34.59 4.02
859 868 3.461085 ACATGACCCCTGATAATGCTCTT 59.539 43.478 0.00 0.00 0.00 2.85
877 886 2.553602 TCTTTCACATCACCACATGCAC 59.446 45.455 0.00 0.00 0.00 4.57
881 890 1.246056 ACATCACCACATGCACAGGC 61.246 55.000 0.00 0.00 41.68 4.85
882 891 1.679977 ATCACCACATGCACAGGCC 60.680 57.895 0.00 0.00 40.13 5.19
883 892 2.429235 ATCACCACATGCACAGGCCA 62.429 55.000 5.01 0.00 40.13 5.36
886 895 2.183300 CACATGCACAGGCCATGC 59.817 61.111 21.87 21.87 43.68 4.06
887 896 2.036731 ACATGCACAGGCCATGCT 59.963 55.556 26.78 13.55 43.77 3.79
888 897 1.608336 ACATGCACAGGCCATGCTT 60.608 52.632 26.78 20.04 43.77 3.91
898 937 5.620654 GCACAGGCCATGCTTGTATATATTG 60.621 44.000 21.49 0.64 46.73 1.90
901 940 4.460382 AGGCCATGCTTGTATATATTGTGC 59.540 41.667 5.01 0.00 0.00 4.57
924 963 8.552865 GTGCATACTATAGTACAGATAGGATCG 58.447 40.741 14.82 10.13 29.38 3.69
926 965 8.767085 GCATACTATAGTACAGATAGGATCGAC 58.233 40.741 14.82 4.99 29.38 4.20
927 966 8.970293 CATACTATAGTACAGATAGGATCGACG 58.030 40.741 14.82 0.00 29.38 5.12
935 974 1.738346 ATAGGATCGACGCTGCTGCA 61.738 55.000 16.29 0.88 39.64 4.41
947 986 2.804572 CGCTGCTGCATGGATAGTTAGT 60.805 50.000 16.29 0.00 39.64 2.24
1009 1048 0.324552 TGCAGAATCAATGGGGTGGG 60.325 55.000 0.00 0.00 0.00 4.61
1011 1050 1.477553 CAGAATCAATGGGGTGGGTG 58.522 55.000 0.00 0.00 0.00 4.61
1017 1056 1.230149 AATGGGGTGGGTGGAGCTA 60.230 57.895 0.00 0.00 0.00 3.32
1059 1098 0.458543 TCGCCTTCGACATGCTCTTC 60.459 55.000 0.00 0.00 40.21 2.87
1062 1101 0.459237 CCTTCGACATGCTCTTCGCT 60.459 55.000 0.00 0.00 40.11 4.93
1071 1110 0.390340 TGCTCTTCGCTGTGATGACC 60.390 55.000 3.01 0.00 40.11 4.02
1077 1116 2.733671 CGCTGTGATGACCGTGCTG 61.734 63.158 0.00 0.00 0.00 4.41
1092 1131 1.968540 GCTGGTGAAGAAGGCGCTT 60.969 57.895 7.64 0.00 0.00 4.68
1097 1136 1.442769 GTGAAGAAGGCGCTTGATGA 58.557 50.000 7.64 0.00 0.00 2.92
1098 1137 2.012673 GTGAAGAAGGCGCTTGATGAT 58.987 47.619 7.64 0.00 0.00 2.45
1104 1143 2.719979 GCGCTTGATGATGGCCTG 59.280 61.111 3.32 0.00 0.00 4.85
1110 1149 1.002069 TTGATGATGGCCTGAACCCT 58.998 50.000 3.32 0.00 0.00 4.34
1143 1182 3.793144 CTTCGGCAGCTTGTCGGC 61.793 66.667 9.65 0.00 46.79 5.54
1453 1496 3.190535 TGCCGCTGAAAATTTCTCCTAAC 59.809 43.478 7.29 0.00 0.00 2.34
2017 2063 3.816523 GACCCAAGAACACGGTGAAAATA 59.183 43.478 16.29 0.00 0.00 1.40
2514 2563 5.532557 TCATGGCTCTGATAGTTATGAACG 58.467 41.667 0.00 0.00 36.23 3.95
2558 2607 0.975887 GCCTTGATCTGGGGCAAAAA 59.024 50.000 15.59 0.00 44.69 1.94
2638 2688 5.560183 GCGTAAGTACACTGAAACTTTGCAT 60.560 40.000 0.00 0.00 37.19 3.96
2812 2864 0.542805 TACGTGGGAAGGTATTGGCC 59.457 55.000 0.00 0.00 0.00 5.36
2865 2920 7.275888 TGACAGAGAAATGTGCAAAATAAGT 57.724 32.000 0.00 0.00 32.25 2.24
3123 3197 5.645929 ACGGACTAACAATTGACATATTGCA 59.354 36.000 13.59 0.00 38.74 4.08
3227 3302 7.384932 ACACTTTTGTTTCTCTTTTTGTCCTTG 59.615 33.333 0.00 0.00 28.43 3.61
3383 3458 5.437060 TGTGAAGTATAGAAAGGGCATTCC 58.563 41.667 0.00 0.00 0.00 3.01
3627 3704 2.612471 CCGCCTTCATTGGAATGCAAAA 60.612 45.455 0.00 0.00 42.61 2.44
3635 3712 4.527816 TCATTGGAATGCAAAAACTAGCCT 59.472 37.500 0.00 0.00 36.36 4.58
3670 3747 0.250467 AATGACAGTTGCGCAGGAGT 60.250 50.000 11.31 10.47 0.00 3.85
3858 3950 8.622948 AGTTTTCTTTATGTTAGGAAGTGAGG 57.377 34.615 0.00 0.00 0.00 3.86
3911 4003 0.389166 CAGTCTCAGTGCTTCCGTCC 60.389 60.000 0.00 0.00 0.00 4.79
4098 4192 4.913335 ACGAGTAAGTTGTCACAAGAGA 57.087 40.909 0.00 0.00 0.00 3.10
4217 4330 8.153550 AGTAGCATTGCAGGGCTATATATAATC 58.846 37.037 20.05 8.40 43.78 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.213482 AGCCAAAACGATAGAACAGTTCAC 59.787 41.667 15.85 5.72 41.38 3.18
66 68 0.037697 CCAACGTAGGCAGCACTACA 60.038 55.000 16.66 0.00 42.68 2.74
73 75 1.153823 CGGAGTCCAACGTAGGCAG 60.154 63.158 10.49 0.00 0.00 4.85
79 81 2.600470 TTACAAACGGAGTCCAACGT 57.400 45.000 10.49 2.95 45.00 3.99
119 122 1.344438 TGAGCACGAACAAGGATCTGT 59.656 47.619 0.00 0.00 0.00 3.41
145 148 3.843027 AGAGAACAAGGATCAGGATGTGT 59.157 43.478 0.00 0.00 37.40 3.72
147 150 5.511386 AAAGAGAACAAGGATCAGGATGT 57.489 39.130 0.00 0.00 37.40 3.06
187 191 5.163269 CCAATATCCTCTGTTCCTCACATGA 60.163 44.000 0.00 0.00 33.76 3.07
202 206 6.393897 TGATCTAAAGACCTCCCAATATCCT 58.606 40.000 0.00 0.00 0.00 3.24
228 233 7.081379 AAGATAGGCTTTGCTAGGAAAGTTCC 61.081 42.308 30.06 24.44 39.79 3.62
267 272 2.869233 TGACTGGCTCAAAACAAAGC 57.131 45.000 0.00 0.00 37.80 3.51
332 341 0.903924 AGAGCAGAGGAGCAGCTGAA 60.904 55.000 20.43 0.00 39.71 3.02
337 346 1.270732 ACAAACAGAGCAGAGGAGCAG 60.271 52.381 0.00 0.00 36.85 4.24
387 396 6.096141 ACTCTGAACATACAGACAGATAGGTG 59.904 42.308 0.00 0.00 41.21 4.00
393 402 4.407365 TGGACTCTGAACATACAGACAGA 58.593 43.478 0.00 0.00 41.21 3.41
394 403 4.790765 TGGACTCTGAACATACAGACAG 57.209 45.455 0.00 0.00 41.21 3.51
395 404 5.481824 AGATTGGACTCTGAACATACAGACA 59.518 40.000 0.00 0.00 41.21 3.41
396 405 5.971763 AGATTGGACTCTGAACATACAGAC 58.028 41.667 0.00 0.00 41.21 3.51
434 443 3.087370 ACTACCAAAAGGGGAAGATGC 57.913 47.619 0.00 0.00 42.91 3.91
439 448 3.673543 ACACAACTACCAAAAGGGGAA 57.326 42.857 0.00 0.00 42.91 3.97
442 451 5.374071 ACTAGAACACAACTACCAAAAGGG 58.626 41.667 0.00 0.00 44.81 3.95
450 459 7.510630 CACATTGCTAACTAGAACACAACTAC 58.489 38.462 0.00 0.00 0.00 2.73
487 496 5.167121 TGTTCCAAAATAAATGGCATCACG 58.833 37.500 0.00 0.00 37.88 4.35
517 526 4.415881 TGAAGAAGAACAGCACTACCAA 57.584 40.909 0.00 0.00 0.00 3.67
560 569 1.406614 GGAAGCACTGTGGATGAGGAG 60.407 57.143 10.21 0.00 0.00 3.69
633 642 5.028802 ACTAGATGCTGGATGCCTATATGT 58.971 41.667 0.00 0.00 42.00 2.29
634 643 5.358090 CACTAGATGCTGGATGCCTATATG 58.642 45.833 0.00 0.00 42.00 1.78
637 646 3.977134 CACTAGATGCTGGATGCCTAT 57.023 47.619 0.00 0.00 42.00 2.57
684 693 6.480320 GCATGACTACTGGTTTAGATGGTTAG 59.520 42.308 0.00 0.00 0.00 2.34
685 694 6.070481 TGCATGACTACTGGTTTAGATGGTTA 60.070 38.462 0.00 0.00 0.00 2.85
686 695 5.186198 GCATGACTACTGGTTTAGATGGTT 58.814 41.667 0.00 0.00 0.00 3.67
755 764 0.840288 TTAACTGGAGCAGGCAGGGA 60.840 55.000 0.00 0.00 35.51 4.20
799 808 6.643388 TGTGAGAGAGCAATGCTAATTCTAA 58.357 36.000 8.12 2.26 39.88 2.10
824 833 4.475016 AGGGGTCATGTCACTAGCTTTATT 59.525 41.667 0.00 0.00 0.00 1.40
840 849 3.523157 TGAAAGAGCATTATCAGGGGTCA 59.477 43.478 0.00 0.00 0.00 4.02
842 851 3.266772 TGTGAAAGAGCATTATCAGGGGT 59.733 43.478 0.00 0.00 0.00 4.95
844 853 5.008415 GTGATGTGAAAGAGCATTATCAGGG 59.992 44.000 0.00 0.00 30.32 4.45
859 868 1.881324 CTGTGCATGTGGTGATGTGAA 59.119 47.619 0.00 0.00 0.00 3.18
877 886 5.620654 GCACAATATATACAAGCATGGCCTG 60.621 44.000 3.32 0.34 0.00 4.85
881 890 8.272545 AGTATGCACAATATATACAAGCATGG 57.727 34.615 17.85 0.00 40.92 3.66
898 937 8.552865 CGATCCTATCTGTACTATAGTATGCAC 58.447 40.741 15.53 6.25 32.54 4.57
901 940 8.970293 CGTCGATCCTATCTGTACTATAGTATG 58.030 40.741 15.53 11.54 32.54 2.39
908 947 3.995048 CAGCGTCGATCCTATCTGTACTA 59.005 47.826 0.00 0.00 0.00 1.82
911 950 1.535896 GCAGCGTCGATCCTATCTGTA 59.464 52.381 0.00 0.00 0.00 2.74
924 963 0.531532 ACTATCCATGCAGCAGCGTC 60.532 55.000 0.00 0.00 46.23 5.19
926 965 1.797046 CTAACTATCCATGCAGCAGCG 59.203 52.381 0.00 0.00 46.23 5.18
927 966 2.547211 CACTAACTATCCATGCAGCAGC 59.453 50.000 0.00 0.00 42.57 5.25
935 974 2.172717 GTGGTGGGCACTAACTATCCAT 59.827 50.000 0.00 0.00 0.00 3.41
947 986 1.462432 TGGTCTTAGGTGGTGGGCA 60.462 57.895 0.00 0.00 0.00 5.36
1059 1098 2.433145 AGCACGGTCATCACAGCG 60.433 61.111 0.00 0.00 42.99 5.18
1071 1110 2.671177 CGCCTTCTTCACCAGCACG 61.671 63.158 0.00 0.00 0.00 5.34
1077 1116 0.449388 CATCAAGCGCCTTCTTCACC 59.551 55.000 2.29 0.00 0.00 4.02
1092 1131 0.256752 CAGGGTTCAGGCCATCATCA 59.743 55.000 5.01 0.00 0.00 3.07
1097 1136 1.779061 AACGACAGGGTTCAGGCCAT 61.779 55.000 5.01 0.00 0.00 4.40
1098 1137 2.391724 GAACGACAGGGTTCAGGCCA 62.392 60.000 5.01 0.00 44.44 5.36
1104 1143 1.925185 GCGATAAGAACGACAGGGTTC 59.075 52.381 0.00 0.00 45.19 3.62
1110 1149 2.477357 CCGAAGAGCGATAAGAACGACA 60.477 50.000 0.00 0.00 44.57 4.35
1453 1496 9.859427 TGCATTCCTGAAATCAACTAAAAATAG 57.141 29.630 0.00 0.00 0.00 1.73
1655 1701 8.201464 CCCTGTATACAGTTATACACACATTCA 58.799 37.037 27.07 0.00 43.42 2.57
1822 1868 3.755905 TGAACAGTTTGTGACTTGAAGCA 59.244 39.130 0.00 0.00 36.10 3.91
2017 2063 2.124320 ACTGTTGCCCGTTGTGCT 60.124 55.556 0.00 0.00 0.00 4.40
2288 2334 0.912486 AGGTTGGTGGTATCTGAGCC 59.088 55.000 0.00 0.00 0.00 4.70
2376 2424 5.396772 CCAGACAAGTGGGATCAAATAGCTA 60.397 44.000 0.00 0.00 33.46 3.32
2480 2528 4.654915 TCAGAGCCATGAAGAATTGTGAA 58.345 39.130 0.00 0.00 0.00 3.18
2482 2530 5.821470 ACTATCAGAGCCATGAAGAATTGTG 59.179 40.000 0.00 0.00 31.76 3.33
2514 2563 1.819632 CTAACTCGTGGGGCCATGC 60.820 63.158 4.39 0.00 33.28 4.06
2638 2688 2.962421 CCCACTCCCTGTAAAGCAAAAA 59.038 45.455 0.00 0.00 0.00 1.94
2927 2982 9.715121 AATTAGGACACAACGAGAAAGTAAATA 57.285 29.630 0.00 0.00 0.00 1.40
2928 2983 8.617290 AATTAGGACACAACGAGAAAGTAAAT 57.383 30.769 0.00 0.00 0.00 1.40
3123 3197 3.924686 CCGATAGTTCTGTACGCAACTTT 59.075 43.478 12.97 6.91 34.60 2.66
3227 3302 0.955919 GCAGCACCTACCACACTTCC 60.956 60.000 0.00 0.00 0.00 3.46
3383 3458 5.892119 TCTTGACATCCCCACTAACTACTAG 59.108 44.000 0.00 0.00 0.00 2.57
3414 3489 5.829924 CAGGGCAGATAGTTGGAACATTTAT 59.170 40.000 0.00 0.00 39.30 1.40
3662 3739 4.688879 TGTTAGTGTGATTTTACTCCTGCG 59.311 41.667 0.00 0.00 0.00 5.18
3670 3747 7.147983 ACCTTTGTGCTTGTTAGTGTGATTTTA 60.148 33.333 0.00 0.00 0.00 1.52
3858 3950 6.018994 CCTTTTTATGTATGTGGACTAGTCGC 60.019 42.308 16.56 12.13 0.00 5.19
3911 4003 4.077822 AGATGCCAAGAAAGTGGAGAAAG 58.922 43.478 0.00 0.00 41.65 2.62
4217 4330 5.979517 TGATACGCTCATTAACTGTCTGATG 59.020 40.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.