Multiple sequence alignment - TraesCS6A01G006000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G006000 chr6A 100.000 2363 0 0 1 2363 2264835 2262473 0.000000e+00 4364.0
1 TraesCS6A01G006000 chrUn 87.680 1664 155 19 652 2309 322770630 322769011 0.000000e+00 1892.0
2 TraesCS6A01G006000 chrUn 98.077 52 1 0 1568 1619 217899188 217899239 8.990000e-15 91.6
3 TraesCS6A01G006000 chr6B 89.102 1358 130 10 652 2003 6816057 6814712 0.000000e+00 1672.0
4 TraesCS6A01G006000 chr6B 88.486 1103 88 16 1213 2309 7180071 7181140 0.000000e+00 1297.0
5 TraesCS6A01G006000 chr6B 88.395 1103 89 16 1213 2309 7222270 7223339 0.000000e+00 1291.0
6 TraesCS6A01G006000 chr6B 85.271 516 70 6 641 1155 7179562 7180072 5.780000e-146 527.0
7 TraesCS6A01G006000 chr6B 85.078 516 72 5 641 1155 7221760 7222271 2.690000e-144 521.0
8 TraesCS6A01G006000 chr6B 93.088 217 10 4 1503 1716 6814716 6814502 1.760000e-81 313.0
9 TraesCS6A01G006000 chr6B 95.556 135 6 0 2176 2310 6814500 6814366 1.420000e-52 217.0
10 TraesCS6A01G006000 chr6B 79.655 290 44 9 325 608 7179286 7179566 6.660000e-46 195.0
11 TraesCS6A01G006000 chr6B 79.655 290 44 9 325 608 7221484 7221764 6.660000e-46 195.0
12 TraesCS6A01G006000 chr6D 84.592 649 89 7 885 1526 3471686 3471042 3.310000e-178 634.0
13 TraesCS6A01G006000 chr6D 85.283 265 32 4 1763 2020 3470916 3470652 1.390000e-67 267.0
14 TraesCS6A01G006000 chr6D 86.190 210 23 6 652 858 3471886 3471680 3.060000e-54 222.0
15 TraesCS6A01G006000 chr6D 79.930 284 42 9 333 611 3472161 3471888 6.660000e-46 195.0
16 TraesCS6A01G006000 chr6D 96.364 55 2 0 1568 1622 458949838 458949784 8.990000e-15 91.6
17 TraesCS6A01G006000 chr1D 96.522 115 4 0 1621 1735 51920110 51920224 8.620000e-45 191.0
18 TraesCS6A01G006000 chr1D 95.652 115 5 0 1621 1735 254388481 254388595 4.010000e-43 185.0
19 TraesCS6A01G006000 chr5D 95.652 115 5 0 1621 1735 503224823 503224709 4.010000e-43 185.0
20 TraesCS6A01G006000 chr5D 78.926 242 46 5 458 697 215250804 215251042 2.430000e-35 159.0
21 TraesCS6A01G006000 chr4D 95.652 115 5 0 1621 1735 292956606 292956720 4.010000e-43 185.0
22 TraesCS6A01G006000 chr4D 98.077 52 1 0 1568 1619 87365269 87365320 8.990000e-15 91.6
23 TraesCS6A01G006000 chr5B 77.273 242 50 5 458 697 230771724 230771962 1.140000e-28 137.0
24 TraesCS6A01G006000 chr3D 82.258 124 18 2 1225 1348 142480945 142480826 1.160000e-18 104.0
25 TraesCS6A01G006000 chr3B 82.258 124 18 2 1225 1348 204286409 204286290 1.160000e-18 104.0
26 TraesCS6A01G006000 chr1A 96.364 55 2 0 1568 1622 94653951 94653897 8.990000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G006000 chr6A 2262473 2264835 2362 True 4364.0 4364 100.000000 1 2363 1 chr6A.!!$R1 2362
1 TraesCS6A01G006000 chrUn 322769011 322770630 1619 True 1892.0 1892 87.680000 652 2309 1 chrUn.!!$R1 1657
2 TraesCS6A01G006000 chr6B 6814366 6816057 1691 True 734.0 1672 92.582000 652 2310 3 chr6B.!!$R1 1658
3 TraesCS6A01G006000 chr6B 7179286 7181140 1854 False 673.0 1297 84.470667 325 2309 3 chr6B.!!$F1 1984
4 TraesCS6A01G006000 chr6B 7221484 7223339 1855 False 669.0 1291 84.376000 325 2309 3 chr6B.!!$F2 1984
5 TraesCS6A01G006000 chr6D 3470652 3472161 1509 True 329.5 634 83.998750 333 2020 4 chr6D.!!$R2 1687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 793 0.318441 TGTGAGCTTCTCAACTCGGG 59.682 55.0 0.0 0.0 42.46 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2351 0.38852 GGCCGAAAGAATTGGTGTGC 60.389 55.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.653726 TGTGTCTTCTGCATGTTTGGT 58.346 42.857 0.00 0.00 0.00 3.67
21 22 2.618241 TGTGTCTTCTGCATGTTTGGTC 59.382 45.455 0.00 0.00 0.00 4.02
22 23 2.618241 GTGTCTTCTGCATGTTTGGTCA 59.382 45.455 0.00 0.00 0.00 4.02
23 24 3.066621 GTGTCTTCTGCATGTTTGGTCAA 59.933 43.478 0.00 0.00 0.00 3.18
24 25 3.316029 TGTCTTCTGCATGTTTGGTCAAG 59.684 43.478 0.00 0.00 0.00 3.02
25 26 3.565482 GTCTTCTGCATGTTTGGTCAAGA 59.435 43.478 0.00 0.00 0.00 3.02
26 27 4.036734 GTCTTCTGCATGTTTGGTCAAGAA 59.963 41.667 0.00 0.00 0.00 2.52
27 28 4.276678 TCTTCTGCATGTTTGGTCAAGAAG 59.723 41.667 0.00 0.00 33.63 2.85
28 29 2.886523 TCTGCATGTTTGGTCAAGAAGG 59.113 45.455 0.00 0.00 0.00 3.46
29 30 2.886523 CTGCATGTTTGGTCAAGAAGGA 59.113 45.455 0.00 0.00 0.00 3.36
30 31 3.499338 TGCATGTTTGGTCAAGAAGGAT 58.501 40.909 0.00 0.00 0.00 3.24
31 32 3.256383 TGCATGTTTGGTCAAGAAGGATG 59.744 43.478 0.00 0.00 0.00 3.51
32 33 3.507233 GCATGTTTGGTCAAGAAGGATGA 59.493 43.478 0.00 0.00 0.00 2.92
33 34 4.159135 GCATGTTTGGTCAAGAAGGATGAT 59.841 41.667 0.00 0.00 0.00 2.45
34 35 5.357878 GCATGTTTGGTCAAGAAGGATGATA 59.642 40.000 0.00 0.00 0.00 2.15
35 36 6.127647 GCATGTTTGGTCAAGAAGGATGATAA 60.128 38.462 0.00 0.00 0.00 1.75
36 37 7.478322 CATGTTTGGTCAAGAAGGATGATAAG 58.522 38.462 0.00 0.00 0.00 1.73
37 38 6.778821 TGTTTGGTCAAGAAGGATGATAAGA 58.221 36.000 0.00 0.00 0.00 2.10
38 39 6.881065 TGTTTGGTCAAGAAGGATGATAAGAG 59.119 38.462 0.00 0.00 0.00 2.85
39 40 5.620738 TGGTCAAGAAGGATGATAAGAGG 57.379 43.478 0.00 0.00 0.00 3.69
40 41 5.280499 TGGTCAAGAAGGATGATAAGAGGA 58.720 41.667 0.00 0.00 0.00 3.71
41 42 5.365025 TGGTCAAGAAGGATGATAAGAGGAG 59.635 44.000 0.00 0.00 0.00 3.69
42 43 5.600484 GGTCAAGAAGGATGATAAGAGGAGA 59.400 44.000 0.00 0.00 0.00 3.71
43 44 6.269769 GGTCAAGAAGGATGATAAGAGGAGAT 59.730 42.308 0.00 0.00 0.00 2.75
44 45 7.202084 GGTCAAGAAGGATGATAAGAGGAGATT 60.202 40.741 0.00 0.00 0.00 2.40
45 46 7.656948 GTCAAGAAGGATGATAAGAGGAGATTG 59.343 40.741 0.00 0.00 0.00 2.67
46 47 7.346698 TCAAGAAGGATGATAAGAGGAGATTGT 59.653 37.037 0.00 0.00 0.00 2.71
47 48 7.688918 AGAAGGATGATAAGAGGAGATTGTT 57.311 36.000 0.00 0.00 0.00 2.83
48 49 7.507829 AGAAGGATGATAAGAGGAGATTGTTG 58.492 38.462 0.00 0.00 0.00 3.33
49 50 6.185114 AGGATGATAAGAGGAGATTGTTGG 57.815 41.667 0.00 0.00 0.00 3.77
50 51 4.759183 GGATGATAAGAGGAGATTGTTGGC 59.241 45.833 0.00 0.00 0.00 4.52
51 52 4.156455 TGATAAGAGGAGATTGTTGGCC 57.844 45.455 0.00 0.00 0.00 5.36
52 53 3.523157 TGATAAGAGGAGATTGTTGGCCA 59.477 43.478 0.00 0.00 0.00 5.36
53 54 2.206576 AAGAGGAGATTGTTGGCCAC 57.793 50.000 3.88 0.75 0.00 5.01
54 55 1.067295 AGAGGAGATTGTTGGCCACA 58.933 50.000 3.88 4.06 0.00 4.17
55 56 1.168714 GAGGAGATTGTTGGCCACAC 58.831 55.000 3.88 8.11 33.98 3.82
56 57 0.478072 AGGAGATTGTTGGCCACACA 59.522 50.000 3.88 11.00 33.98 3.72
57 58 1.076024 AGGAGATTGTTGGCCACACAT 59.924 47.619 3.88 0.00 33.98 3.21
58 59 2.308570 AGGAGATTGTTGGCCACACATA 59.691 45.455 3.88 5.34 33.98 2.29
59 60 3.053395 AGGAGATTGTTGGCCACACATAT 60.053 43.478 3.88 9.59 33.98 1.78
60 61 4.165950 AGGAGATTGTTGGCCACACATATA 59.834 41.667 3.88 0.00 33.98 0.86
61 62 5.072741 GGAGATTGTTGGCCACACATATAT 58.927 41.667 3.88 4.27 33.98 0.86
62 63 5.536161 GGAGATTGTTGGCCACACATATATT 59.464 40.000 3.88 0.00 33.98 1.28
63 64 6.395426 AGATTGTTGGCCACACATATATTG 57.605 37.500 3.88 0.00 33.98 1.90
64 65 6.128486 AGATTGTTGGCCACACATATATTGA 58.872 36.000 3.88 0.00 33.98 2.57
65 66 6.606796 AGATTGTTGGCCACACATATATTGAA 59.393 34.615 3.88 0.00 33.98 2.69
66 67 5.833406 TGTTGGCCACACATATATTGAAG 57.167 39.130 3.88 0.00 0.00 3.02
67 68 5.260424 TGTTGGCCACACATATATTGAAGT 58.740 37.500 3.88 0.00 0.00 3.01
68 69 6.418946 TGTTGGCCACACATATATTGAAGTA 58.581 36.000 3.88 0.00 0.00 2.24
69 70 6.887002 TGTTGGCCACACATATATTGAAGTAA 59.113 34.615 3.88 0.00 0.00 2.24
70 71 7.559533 TGTTGGCCACACATATATTGAAGTAAT 59.440 33.333 3.88 0.00 0.00 1.89
71 72 7.744087 TGGCCACACATATATTGAAGTAATC 57.256 36.000 0.00 0.00 0.00 1.75
72 73 7.517320 TGGCCACACATATATTGAAGTAATCT 58.483 34.615 0.00 0.00 0.00 2.40
73 74 7.445096 TGGCCACACATATATTGAAGTAATCTG 59.555 37.037 0.00 0.00 0.00 2.90
74 75 7.445402 GGCCACACATATATTGAAGTAATCTGT 59.555 37.037 0.00 0.00 0.00 3.41
75 76 8.840321 GCCACACATATATTGAAGTAATCTGTT 58.160 33.333 3.02 0.00 0.00 3.16
84 85 9.739276 ATATTGAAGTAATCTGTTCTTTGACCA 57.261 29.630 0.00 0.00 0.00 4.02
85 86 8.641498 ATTGAAGTAATCTGTTCTTTGACCAT 57.359 30.769 0.00 0.00 0.00 3.55
86 87 7.439157 TGAAGTAATCTGTTCTTTGACCATG 57.561 36.000 0.00 0.00 0.00 3.66
87 88 6.998074 TGAAGTAATCTGTTCTTTGACCATGT 59.002 34.615 0.00 0.00 0.00 3.21
88 89 6.808008 AGTAATCTGTTCTTTGACCATGTG 57.192 37.500 0.00 0.00 0.00 3.21
89 90 6.299141 AGTAATCTGTTCTTTGACCATGTGT 58.701 36.000 0.00 0.00 0.00 3.72
90 91 7.450074 AGTAATCTGTTCTTTGACCATGTGTA 58.550 34.615 0.00 0.00 0.00 2.90
91 92 8.103305 AGTAATCTGTTCTTTGACCATGTGTAT 58.897 33.333 0.00 0.00 0.00 2.29
92 93 7.765695 AATCTGTTCTTTGACCATGTGTATT 57.234 32.000 0.00 0.00 0.00 1.89
93 94 7.765695 ATCTGTTCTTTGACCATGTGTATTT 57.234 32.000 0.00 0.00 0.00 1.40
94 95 7.581213 TCTGTTCTTTGACCATGTGTATTTT 57.419 32.000 0.00 0.00 0.00 1.82
95 96 8.006298 TCTGTTCTTTGACCATGTGTATTTTT 57.994 30.769 0.00 0.00 0.00 1.94
96 97 8.134895 TCTGTTCTTTGACCATGTGTATTTTTC 58.865 33.333 0.00 0.00 0.00 2.29
97 98 7.776107 TGTTCTTTGACCATGTGTATTTTTCA 58.224 30.769 0.00 0.00 0.00 2.69
98 99 7.704472 TGTTCTTTGACCATGTGTATTTTTCAC 59.296 33.333 0.00 0.00 36.48 3.18
100 101 7.776107 TCTTTGACCATGTGTATTTTTCACAA 58.224 30.769 2.99 0.00 46.47 3.33
101 102 8.253810 TCTTTGACCATGTGTATTTTTCACAAA 58.746 29.630 2.99 0.00 46.47 2.83
102 103 8.954950 TTTGACCATGTGTATTTTTCACAAAT 57.045 26.923 2.99 0.00 46.47 2.32
103 104 8.954950 TTGACCATGTGTATTTTTCACAAATT 57.045 26.923 2.99 0.00 46.47 1.82
104 105 8.362860 TGACCATGTGTATTTTTCACAAATTG 57.637 30.769 2.99 0.00 46.47 2.32
105 106 8.200120 TGACCATGTGTATTTTTCACAAATTGA 58.800 29.630 0.00 0.00 46.47 2.57
106 107 9.206870 GACCATGTGTATTTTTCACAAATTGAT 57.793 29.630 0.00 0.00 46.47 2.57
136 137 9.890629 TCAATCAGATTTAAATATCCTATCCCG 57.109 33.333 0.00 0.00 0.00 5.14
137 138 8.616076 CAATCAGATTTAAATATCCTATCCCGC 58.384 37.037 0.00 0.00 0.00 6.13
138 139 7.252612 TCAGATTTAAATATCCTATCCCGCA 57.747 36.000 0.00 0.00 0.00 5.69
139 140 7.103641 TCAGATTTAAATATCCTATCCCGCAC 58.896 38.462 0.00 0.00 0.00 5.34
140 141 6.878923 CAGATTTAAATATCCTATCCCGCACA 59.121 38.462 0.00 0.00 0.00 4.57
141 142 7.554118 CAGATTTAAATATCCTATCCCGCACAT 59.446 37.037 0.00 0.00 0.00 3.21
142 143 7.554118 AGATTTAAATATCCTATCCCGCACATG 59.446 37.037 0.00 0.00 0.00 3.21
143 144 4.640771 AAATATCCTATCCCGCACATGT 57.359 40.909 0.00 0.00 0.00 3.21
144 145 4.640771 AATATCCTATCCCGCACATGTT 57.359 40.909 0.00 0.00 0.00 2.71
145 146 4.640771 ATATCCTATCCCGCACATGTTT 57.359 40.909 0.00 0.00 0.00 2.83
146 147 2.799126 TCCTATCCCGCACATGTTTT 57.201 45.000 0.00 0.00 0.00 2.43
147 148 2.639065 TCCTATCCCGCACATGTTTTC 58.361 47.619 0.00 0.00 0.00 2.29
148 149 2.238646 TCCTATCCCGCACATGTTTTCT 59.761 45.455 0.00 0.00 0.00 2.52
149 150 2.355756 CCTATCCCGCACATGTTTTCTG 59.644 50.000 0.00 0.00 0.00 3.02
150 151 1.909700 ATCCCGCACATGTTTTCTGT 58.090 45.000 0.00 0.00 0.00 3.41
151 152 0.950836 TCCCGCACATGTTTTCTGTG 59.049 50.000 0.00 0.00 45.39 3.66
152 153 0.667993 CCCGCACATGTTTTCTGTGT 59.332 50.000 0.00 0.00 44.62 3.72
153 154 1.066908 CCCGCACATGTTTTCTGTGTT 59.933 47.619 0.00 0.00 44.62 3.32
154 155 2.481104 CCCGCACATGTTTTCTGTGTTT 60.481 45.455 0.00 0.00 44.62 2.83
155 156 2.535166 CCGCACATGTTTTCTGTGTTTG 59.465 45.455 0.00 0.00 44.62 2.93
156 157 3.433709 CGCACATGTTTTCTGTGTTTGA 58.566 40.909 0.00 0.00 44.62 2.69
157 158 3.856521 CGCACATGTTTTCTGTGTTTGAA 59.143 39.130 0.00 0.00 44.62 2.69
158 159 4.503734 CGCACATGTTTTCTGTGTTTGAAT 59.496 37.500 0.00 0.00 44.62 2.57
159 160 5.005586 CGCACATGTTTTCTGTGTTTGAATT 59.994 36.000 0.00 0.00 44.62 2.17
160 161 6.198029 CGCACATGTTTTCTGTGTTTGAATTA 59.802 34.615 0.00 0.00 44.62 1.40
161 162 7.336975 GCACATGTTTTCTGTGTTTGAATTAC 58.663 34.615 0.00 0.00 44.62 1.89
162 163 7.222611 GCACATGTTTTCTGTGTTTGAATTACT 59.777 33.333 0.00 0.00 44.62 2.24
163 164 9.086336 CACATGTTTTCTGTGTTTGAATTACTT 57.914 29.630 0.00 0.00 39.30 2.24
170 171 9.959749 TTTCTGTGTTTGAATTACTTAATGGAC 57.040 29.630 0.00 0.00 0.00 4.02
171 172 8.106247 TCTGTGTTTGAATTACTTAATGGACC 57.894 34.615 0.00 0.00 0.00 4.46
172 173 7.942341 TCTGTGTTTGAATTACTTAATGGACCT 59.058 33.333 0.00 0.00 0.00 3.85
173 174 7.881142 TGTGTTTGAATTACTTAATGGACCTG 58.119 34.615 0.00 0.00 0.00 4.00
174 175 7.040062 TGTGTTTGAATTACTTAATGGACCTGG 60.040 37.037 0.00 0.00 0.00 4.45
175 176 7.007723 TGTTTGAATTACTTAATGGACCTGGT 58.992 34.615 0.00 0.00 0.00 4.00
176 177 8.164733 TGTTTGAATTACTTAATGGACCTGGTA 58.835 33.333 0.00 0.00 0.00 3.25
177 178 9.016438 GTTTGAATTACTTAATGGACCTGGTAA 57.984 33.333 0.00 0.00 0.00 2.85
178 179 8.801882 TTGAATTACTTAATGGACCTGGTAAG 57.198 34.615 0.00 1.67 0.00 2.34
179 180 8.153221 TGAATTACTTAATGGACCTGGTAAGA 57.847 34.615 12.10 0.00 0.00 2.10
180 181 8.265055 TGAATTACTTAATGGACCTGGTAAGAG 58.735 37.037 12.10 2.90 0.00 2.85
181 182 7.989947 ATTACTTAATGGACCTGGTAAGAGA 57.010 36.000 12.10 2.41 0.00 3.10
182 183 5.678955 ACTTAATGGACCTGGTAAGAGAC 57.321 43.478 12.10 0.00 0.00 3.36
183 184 5.342866 ACTTAATGGACCTGGTAAGAGACT 58.657 41.667 12.10 0.00 0.00 3.24
184 185 5.785940 ACTTAATGGACCTGGTAAGAGACTT 59.214 40.000 12.10 0.00 0.00 3.01
185 186 4.559862 AATGGACCTGGTAAGAGACTTG 57.440 45.455 0.00 0.00 0.00 3.16
186 187 3.254093 TGGACCTGGTAAGAGACTTGA 57.746 47.619 0.00 0.00 0.00 3.02
187 188 3.791320 TGGACCTGGTAAGAGACTTGAT 58.209 45.455 0.00 0.00 0.00 2.57
188 189 4.168101 TGGACCTGGTAAGAGACTTGATT 58.832 43.478 0.00 0.00 0.00 2.57
189 190 4.597507 TGGACCTGGTAAGAGACTTGATTT 59.402 41.667 0.00 0.00 0.00 2.17
190 191 5.073144 TGGACCTGGTAAGAGACTTGATTTT 59.927 40.000 0.00 0.00 0.00 1.82
191 192 5.644206 GGACCTGGTAAGAGACTTGATTTTC 59.356 44.000 0.00 0.00 0.00 2.29
192 193 6.441088 ACCTGGTAAGAGACTTGATTTTCT 57.559 37.500 0.00 0.00 0.00 2.52
193 194 6.842676 ACCTGGTAAGAGACTTGATTTTCTT 58.157 36.000 0.00 0.00 34.51 2.52
194 195 7.974504 ACCTGGTAAGAGACTTGATTTTCTTA 58.025 34.615 0.00 0.00 32.54 2.10
195 196 8.606830 ACCTGGTAAGAGACTTGATTTTCTTAT 58.393 33.333 0.00 0.00 35.36 1.73
196 197 8.887717 CCTGGTAAGAGACTTGATTTTCTTATG 58.112 37.037 0.00 0.00 35.36 1.90
197 198 9.658799 CTGGTAAGAGACTTGATTTTCTTATGA 57.341 33.333 0.00 0.00 35.36 2.15
217 218 5.860941 TGAAAAGGTTACTTTGCATGGAA 57.139 34.783 0.00 0.00 45.28 3.53
218 219 6.227298 TGAAAAGGTTACTTTGCATGGAAA 57.773 33.333 12.14 12.14 45.28 3.13
219 220 6.644347 TGAAAAGGTTACTTTGCATGGAAAA 58.356 32.000 13.69 0.00 45.28 2.29
220 221 6.760770 TGAAAAGGTTACTTTGCATGGAAAAG 59.239 34.615 13.69 10.01 45.28 2.27
221 222 6.478512 AAAGGTTACTTTGCATGGAAAAGA 57.521 33.333 13.69 1.72 44.91 2.52
222 223 5.712152 AGGTTACTTTGCATGGAAAAGAG 57.288 39.130 13.69 4.80 37.91 2.85
223 224 4.524328 AGGTTACTTTGCATGGAAAAGAGG 59.476 41.667 13.69 4.64 37.91 3.69
224 225 4.280929 GGTTACTTTGCATGGAAAAGAGGT 59.719 41.667 13.69 10.12 37.91 3.85
225 226 5.475564 GGTTACTTTGCATGGAAAAGAGGTA 59.524 40.000 13.69 9.19 37.91 3.08
226 227 6.349363 GGTTACTTTGCATGGAAAAGAGGTAG 60.349 42.308 13.69 2.64 37.91 3.18
227 228 4.985538 ACTTTGCATGGAAAAGAGGTAGA 58.014 39.130 13.69 0.00 37.91 2.59
228 229 5.574188 ACTTTGCATGGAAAAGAGGTAGAT 58.426 37.500 13.69 0.00 37.91 1.98
229 230 6.721318 ACTTTGCATGGAAAAGAGGTAGATA 58.279 36.000 13.69 0.00 37.91 1.98
230 231 7.175104 ACTTTGCATGGAAAAGAGGTAGATAA 58.825 34.615 13.69 0.00 37.91 1.75
231 232 7.669722 ACTTTGCATGGAAAAGAGGTAGATAAA 59.330 33.333 13.69 0.00 37.91 1.40
232 233 8.415950 TTTGCATGGAAAAGAGGTAGATAAAA 57.584 30.769 10.24 0.00 0.00 1.52
233 234 8.415950 TTGCATGGAAAAGAGGTAGATAAAAA 57.584 30.769 0.00 0.00 0.00 1.94
234 235 8.055279 TGCATGGAAAAGAGGTAGATAAAAAG 57.945 34.615 0.00 0.00 0.00 2.27
235 236 7.669722 TGCATGGAAAAGAGGTAGATAAAAAGT 59.330 33.333 0.00 0.00 0.00 2.66
236 237 9.174166 GCATGGAAAAGAGGTAGATAAAAAGTA 57.826 33.333 0.00 0.00 0.00 2.24
238 239 9.682465 ATGGAAAAGAGGTAGATAAAAAGTACC 57.318 33.333 0.00 0.00 37.13 3.34
239 240 8.662255 TGGAAAAGAGGTAGATAAAAAGTACCA 58.338 33.333 0.00 0.00 39.02 3.25
240 241 9.682465 GGAAAAGAGGTAGATAAAAAGTACCAT 57.318 33.333 0.00 0.00 39.02 3.55
245 246 9.490083 AGAGGTAGATAAAAAGTACCATGTAGT 57.510 33.333 0.00 0.00 39.02 2.73
269 270 8.837389 AGTAAGTTGAGATAAAGTTTGTCAACC 58.163 33.333 23.29 14.98 45.32 3.77
270 271 6.635030 AGTTGAGATAAAGTTTGTCAACCC 57.365 37.500 23.29 10.51 45.32 4.11
271 272 6.126409 AGTTGAGATAAAGTTTGTCAACCCA 58.874 36.000 23.29 11.62 45.32 4.51
272 273 6.605594 AGTTGAGATAAAGTTTGTCAACCCAA 59.394 34.615 23.29 15.06 45.32 4.12
273 274 7.123547 AGTTGAGATAAAGTTTGTCAACCCAAA 59.876 33.333 23.29 6.85 45.32 3.28
274 275 7.038154 TGAGATAAAGTTTGTCAACCCAAAG 57.962 36.000 13.97 0.00 35.13 2.77
275 276 6.831353 TGAGATAAAGTTTGTCAACCCAAAGA 59.169 34.615 13.97 0.00 35.13 2.52
276 277 7.505585 TGAGATAAAGTTTGTCAACCCAAAGAT 59.494 33.333 13.97 0.00 35.13 2.40
277 278 8.250143 AGATAAAGTTTGTCAACCCAAAGATT 57.750 30.769 13.97 0.00 35.13 2.40
278 279 8.143835 AGATAAAGTTTGTCAACCCAAAGATTG 58.856 33.333 13.97 0.00 35.13 2.67
279 280 5.675684 AAGTTTGTCAACCCAAAGATTGT 57.324 34.783 0.00 0.00 35.13 2.71
280 281 5.675684 AGTTTGTCAACCCAAAGATTGTT 57.324 34.783 0.00 0.00 35.13 2.83
281 282 6.048732 AGTTTGTCAACCCAAAGATTGTTT 57.951 33.333 0.00 0.00 35.13 2.83
282 283 5.874261 AGTTTGTCAACCCAAAGATTGTTTG 59.126 36.000 0.00 0.00 35.13 2.93
283 284 4.399004 TGTCAACCCAAAGATTGTTTGG 57.601 40.909 16.43 16.43 46.41 3.28
284 285 3.772025 TGTCAACCCAAAGATTGTTTGGT 59.228 39.130 20.37 8.86 45.63 3.67
285 286 4.119136 GTCAACCCAAAGATTGTTTGGTG 58.881 43.478 20.37 14.34 45.63 4.17
286 287 3.133721 TCAACCCAAAGATTGTTTGGTGG 59.866 43.478 20.37 10.95 45.63 4.61
287 288 2.837532 CCCAAAGATTGTTTGGTGGG 57.162 50.000 20.37 6.07 45.63 4.61
288 289 1.347378 CCCAAAGATTGTTTGGTGGGG 59.653 52.381 20.37 5.10 45.63 4.96
289 290 2.324541 CCAAAGATTGTTTGGTGGGGA 58.675 47.619 15.41 0.00 42.92 4.81
290 291 2.299867 CCAAAGATTGTTTGGTGGGGAG 59.700 50.000 15.41 0.00 42.92 4.30
291 292 2.965147 CAAAGATTGTTTGGTGGGGAGT 59.035 45.455 0.00 0.00 0.00 3.85
292 293 2.292828 AGATTGTTTGGTGGGGAGTG 57.707 50.000 0.00 0.00 0.00 3.51
293 294 1.780309 AGATTGTTTGGTGGGGAGTGA 59.220 47.619 0.00 0.00 0.00 3.41
294 295 2.379907 AGATTGTTTGGTGGGGAGTGAT 59.620 45.455 0.00 0.00 0.00 3.06
295 296 3.591527 AGATTGTTTGGTGGGGAGTGATA 59.408 43.478 0.00 0.00 0.00 2.15
296 297 2.871096 TGTTTGGTGGGGAGTGATAC 57.129 50.000 0.00 0.00 0.00 2.24
297 298 2.058705 TGTTTGGTGGGGAGTGATACA 58.941 47.619 0.00 0.00 0.00 2.29
298 299 2.443632 TGTTTGGTGGGGAGTGATACAA 59.556 45.455 0.00 0.00 0.00 2.41
299 300 3.075283 TGTTTGGTGGGGAGTGATACAAT 59.925 43.478 0.00 0.00 0.00 2.71
300 301 3.644966 TTGGTGGGGAGTGATACAATC 57.355 47.619 0.00 0.00 0.00 2.67
301 302 1.484653 TGGTGGGGAGTGATACAATCG 59.515 52.381 0.00 0.00 28.47 3.34
302 303 1.760613 GGTGGGGAGTGATACAATCGA 59.239 52.381 0.00 0.00 28.47 3.59
303 304 2.368875 GGTGGGGAGTGATACAATCGAT 59.631 50.000 0.00 0.00 28.47 3.59
304 305 3.555168 GGTGGGGAGTGATACAATCGATC 60.555 52.174 0.00 0.00 28.47 3.69
305 306 3.322254 GTGGGGAGTGATACAATCGATCT 59.678 47.826 0.00 0.00 28.47 2.75
306 307 3.574396 TGGGGAGTGATACAATCGATCTC 59.426 47.826 0.00 0.00 28.47 2.75
307 308 3.574396 GGGGAGTGATACAATCGATCTCA 59.426 47.826 0.00 0.00 28.47 3.27
308 309 4.039245 GGGGAGTGATACAATCGATCTCAA 59.961 45.833 0.00 0.00 28.47 3.02
309 310 5.279708 GGGGAGTGATACAATCGATCTCAAT 60.280 44.000 0.00 0.00 28.47 2.57
310 311 5.636965 GGGAGTGATACAATCGATCTCAATG 59.363 44.000 0.00 0.00 28.47 2.82
311 312 6.219473 GGAGTGATACAATCGATCTCAATGT 58.781 40.000 0.00 1.15 28.47 2.71
312 313 6.703607 GGAGTGATACAATCGATCTCAATGTT 59.296 38.462 0.00 0.00 28.47 2.71
313 314 7.867909 GGAGTGATACAATCGATCTCAATGTTA 59.132 37.037 0.00 0.00 28.47 2.41
314 315 9.249457 GAGTGATACAATCGATCTCAATGTTAA 57.751 33.333 0.00 0.00 0.00 2.01
315 316 9.254133 AGTGATACAATCGATCTCAATGTTAAG 57.746 33.333 0.00 0.00 0.00 1.85
316 317 9.035607 GTGATACAATCGATCTCAATGTTAAGT 57.964 33.333 0.00 0.00 0.00 2.24
321 322 9.599866 ACAATCGATCTCAATGTTAAGTATCAA 57.400 29.630 0.00 0.00 0.00 2.57
324 325 9.689976 ATCGATCTCAATGTTAAGTATCAAGAG 57.310 33.333 0.00 0.00 0.00 2.85
325 326 8.138074 TCGATCTCAATGTTAAGTATCAAGAGG 58.862 37.037 0.00 0.00 0.00 3.69
326 327 7.383572 CGATCTCAATGTTAAGTATCAAGAGGG 59.616 40.741 0.00 0.00 0.00 4.30
327 328 7.496346 TCTCAATGTTAAGTATCAAGAGGGT 57.504 36.000 0.00 0.00 0.00 4.34
328 329 7.918076 TCTCAATGTTAAGTATCAAGAGGGTT 58.082 34.615 0.00 0.00 0.00 4.11
331 332 5.174037 TGTTAAGTATCAAGAGGGTTGGG 57.826 43.478 0.00 0.00 0.00 4.12
338 339 7.226059 AGTATCAAGAGGGTTGGGATTAAAT 57.774 36.000 0.00 0.00 0.00 1.40
340 341 8.218488 AGTATCAAGAGGGTTGGGATTAAATAC 58.782 37.037 0.00 0.00 0.00 1.89
341 342 6.652205 TCAAGAGGGTTGGGATTAAATACT 57.348 37.500 0.00 0.00 0.00 2.12
387 388 6.496218 TGTGATGATCTACAATGGCTAGATCT 59.504 38.462 17.37 0.00 43.75 2.75
388 389 7.035004 GTGATGATCTACAATGGCTAGATCTC 58.965 42.308 17.37 13.59 43.75 2.75
399 405 5.735285 TGGCTAGATCTCAATGTAGGATG 57.265 43.478 0.00 0.00 31.07 3.51
406 412 6.262980 AGATCTCAATGTAGGATGGCTAGAT 58.737 40.000 0.00 0.00 0.00 1.98
412 418 9.814899 CTCAATGTAGGATGGCTAGATTTATAG 57.185 37.037 0.00 0.00 0.00 1.31
413 419 9.326489 TCAATGTAGGATGGCTAGATTTATAGT 57.674 33.333 0.00 0.00 0.00 2.12
417 423 5.415961 AGGATGGCTAGATTTATAGTGGGT 58.584 41.667 0.00 0.00 0.00 4.51
424 430 6.826741 GGCTAGATTTATAGTGGGTTGTCAAA 59.173 38.462 0.00 0.00 0.00 2.69
437 443 4.383661 GGGTTGTCAAAATTCCAACAGGTT 60.384 41.667 0.00 0.00 40.10 3.50
439 445 5.064579 GGTTGTCAAAATTCCAACAGGTTTG 59.935 40.000 0.00 0.00 40.10 2.93
440 446 4.764172 TGTCAAAATTCCAACAGGTTTGG 58.236 39.130 0.00 0.00 40.87 3.28
449 455 3.053544 TCCAACAGGTTTGGTAAAGGACA 60.054 43.478 3.04 0.00 40.40 4.02
455 461 3.396611 AGGTTTGGTAAAGGACAGGCTTA 59.603 43.478 0.00 0.00 0.00 3.09
456 462 4.141111 AGGTTTGGTAAAGGACAGGCTTAA 60.141 41.667 0.00 0.00 0.00 1.85
481 487 1.007038 CGAACGTTCGTTGGGGAGA 60.007 57.895 35.92 0.00 45.09 3.71
496 502 1.469767 GGGAGAATGGCAAATGCGAAC 60.470 52.381 0.00 0.00 43.26 3.95
506 512 3.670991 GGCAAATGCGAACGTTTTTCATA 59.329 39.130 0.46 0.00 43.26 2.15
514 520 5.116377 TGCGAACGTTTTTCATAGCAATTTC 59.884 36.000 0.46 0.00 0.00 2.17
519 525 8.419076 AACGTTTTTCATAGCAATTTCTGTTT 57.581 26.923 0.00 0.00 0.00 2.83
520 526 8.061125 ACGTTTTTCATAGCAATTTCTGTTTC 57.939 30.769 0.00 0.00 0.00 2.78
521 527 7.920682 ACGTTTTTCATAGCAATTTCTGTTTCT 59.079 29.630 0.00 0.00 0.00 2.52
522 528 8.755018 CGTTTTTCATAGCAATTTCTGTTTCTT 58.245 29.630 0.00 0.00 0.00 2.52
531 537 5.279156 GCAATTTCTGTTTCTTGAGGATGGT 60.279 40.000 0.00 0.00 0.00 3.55
534 540 8.359642 CAATTTCTGTTTCTTGAGGATGGTAAA 58.640 33.333 0.00 0.00 0.00 2.01
552 558 6.862209 TGGTAAATTTAGTTAGCAAGCATGG 58.138 36.000 0.00 0.00 38.25 3.66
553 559 6.435904 TGGTAAATTTAGTTAGCAAGCATGGT 59.564 34.615 0.00 0.00 38.25 3.55
555 561 8.463607 GGTAAATTTAGTTAGCAAGCATGGTAA 58.536 33.333 9.35 9.35 44.80 2.85
568 574 3.642938 TGGTAAATCCAGCGCAGTT 57.357 47.368 11.47 0.00 41.93 3.16
569 575 1.448985 TGGTAAATCCAGCGCAGTTC 58.551 50.000 11.47 0.00 41.93 3.01
570 576 1.271108 TGGTAAATCCAGCGCAGTTCA 60.271 47.619 11.47 0.00 41.93 3.18
571 577 1.810151 GGTAAATCCAGCGCAGTTCAA 59.190 47.619 11.47 0.00 35.97 2.69
572 578 2.423538 GGTAAATCCAGCGCAGTTCAAT 59.576 45.455 11.47 0.00 35.97 2.57
576 582 2.704725 TCCAGCGCAGTTCAATTTTC 57.295 45.000 11.47 0.00 0.00 2.29
579 585 2.287788 CCAGCGCAGTTCAATTTTCTGT 60.288 45.455 11.47 0.00 0.00 3.41
590 596 6.041296 AGTTCAATTTTCTGTCAGGATTTGCT 59.959 34.615 0.00 0.00 0.00 3.91
591 597 5.775686 TCAATTTTCTGTCAGGATTTGCTG 58.224 37.500 0.00 0.00 0.00 4.41
608 614 4.589216 TGCTGTGCTTGCTAAAAGAAAT 57.411 36.364 0.00 0.00 0.00 2.17
611 617 5.463061 TGCTGTGCTTGCTAAAAGAAATTTC 59.537 36.000 10.33 10.33 32.27 2.17
612 618 5.107337 GCTGTGCTTGCTAAAAGAAATTTCC 60.107 40.000 14.61 0.00 32.27 3.13
613 619 5.911752 TGTGCTTGCTAAAAGAAATTTCCA 58.088 33.333 14.61 1.72 32.27 3.53
614 620 6.523840 TGTGCTTGCTAAAAGAAATTTCCAT 58.476 32.000 14.61 1.43 32.27 3.41
615 621 6.646240 TGTGCTTGCTAAAAGAAATTTCCATC 59.354 34.615 14.61 0.00 32.27 3.51
616 622 6.091305 GTGCTTGCTAAAAGAAATTTCCATCC 59.909 38.462 14.61 0.21 32.27 3.51
617 623 5.289434 GCTTGCTAAAAGAAATTTCCATCCG 59.711 40.000 14.61 2.76 32.27 4.18
618 624 5.975693 TGCTAAAAGAAATTTCCATCCGT 57.024 34.783 14.61 0.00 32.27 4.69
619 625 5.708948 TGCTAAAAGAAATTTCCATCCGTG 58.291 37.500 14.61 1.52 32.27 4.94
620 626 5.242838 TGCTAAAAGAAATTTCCATCCGTGT 59.757 36.000 14.61 0.00 32.27 4.49
621 627 5.572896 GCTAAAAGAAATTTCCATCCGTGTG 59.427 40.000 14.61 0.00 32.27 3.82
622 628 5.782893 AAAAGAAATTTCCATCCGTGTGA 57.217 34.783 14.61 0.00 0.00 3.58
623 629 4.766404 AAGAAATTTCCATCCGTGTGAC 57.234 40.909 14.61 0.00 0.00 3.67
624 630 3.750371 AGAAATTTCCATCCGTGTGACA 58.250 40.909 14.61 0.00 0.00 3.58
625 631 4.141287 AGAAATTTCCATCCGTGTGACAA 58.859 39.130 14.61 0.00 0.00 3.18
626 632 4.766891 AGAAATTTCCATCCGTGTGACAAT 59.233 37.500 14.61 0.00 0.00 2.71
627 633 5.243730 AGAAATTTCCATCCGTGTGACAATT 59.756 36.000 14.61 0.00 0.00 2.32
628 634 5.467035 AATTTCCATCCGTGTGACAATTT 57.533 34.783 0.00 0.00 0.00 1.82
629 635 6.582677 AATTTCCATCCGTGTGACAATTTA 57.417 33.333 0.00 0.00 0.00 1.40
630 636 6.582677 ATTTCCATCCGTGTGACAATTTAA 57.417 33.333 0.00 0.00 0.00 1.52
631 637 6.392625 TTTCCATCCGTGTGACAATTTAAA 57.607 33.333 0.00 0.00 0.00 1.52
632 638 6.582677 TTCCATCCGTGTGACAATTTAAAT 57.417 33.333 0.00 0.00 0.00 1.40
633 639 6.582677 TCCATCCGTGTGACAATTTAAATT 57.417 33.333 7.64 7.64 0.00 1.82
666 672 7.951530 AAACATTCAATTTGTCATTCTGTCC 57.048 32.000 0.00 0.00 0.00 4.02
667 673 6.653526 ACATTCAATTTGTCATTCTGTCCA 57.346 33.333 0.00 0.00 0.00 4.02
671 677 4.583907 TCAATTTGTCATTCTGTCCAAGCA 59.416 37.500 0.00 0.00 0.00 3.91
678 684 2.031258 TTCTGTCCAAGCAAACGTCA 57.969 45.000 0.00 0.00 0.00 4.35
681 687 0.746204 TGTCCAAGCAAACGTCAGCA 60.746 50.000 13.67 0.00 0.00 4.41
717 723 0.896923 TGGTAAATCCGTACGCACCT 59.103 50.000 10.49 0.00 39.52 4.00
729 735 2.209838 ACGCACCTATGACGAATCAG 57.790 50.000 0.00 0.00 38.57 2.90
731 737 1.221414 GCACCTATGACGAATCAGGC 58.779 55.000 0.00 0.00 38.57 4.85
732 738 1.871080 CACCTATGACGAATCAGGCC 58.129 55.000 0.00 0.00 38.57 5.19
733 739 1.138859 CACCTATGACGAATCAGGCCA 59.861 52.381 5.01 0.00 38.57 5.36
769 775 8.330302 GTTTTGTTTGAAATGAAATCAGGAGTG 58.670 33.333 0.00 0.00 0.00 3.51
770 776 6.713762 TGTTTGAAATGAAATCAGGAGTGT 57.286 33.333 0.00 0.00 0.00 3.55
777 783 3.668447 TGAAATCAGGAGTGTGAGCTTC 58.332 45.455 0.00 0.00 0.00 3.86
785 791 2.323959 GAGTGTGAGCTTCTCAACTCG 58.676 52.381 15.91 0.00 42.46 4.18
787 793 0.318441 TGTGAGCTTCTCAACTCGGG 59.682 55.000 0.00 0.00 42.46 5.14
788 794 0.603569 GTGAGCTTCTCAACTCGGGA 59.396 55.000 0.00 0.00 42.46 5.14
869 876 0.744414 TAGGCTGGTGCGCTCATTTC 60.744 55.000 9.73 0.00 40.82 2.17
875 882 2.358615 TGCGCTCATTTCGGCTGT 60.359 55.556 9.73 0.00 0.00 4.40
878 885 1.911293 GCGCTCATTTCGGCTGTGAA 61.911 55.000 0.00 0.00 0.00 3.18
881 888 1.202222 GCTCATTTCGGCTGTGAATGG 60.202 52.381 17.98 12.50 0.00 3.16
914 921 2.169769 TCACTCCATCCGTATGTTTCCC 59.830 50.000 0.00 0.00 0.00 3.97
1034 1054 2.409651 GTCGCTACTCCGCTCCTG 59.590 66.667 0.00 0.00 0.00 3.86
1035 1055 2.045242 TCGCTACTCCGCTCCTGT 60.045 61.111 0.00 0.00 0.00 4.00
1036 1056 1.677966 TCGCTACTCCGCTCCTGTT 60.678 57.895 0.00 0.00 0.00 3.16
1088 1108 1.048724 TCTTCCATCGGCCTAGGTGG 61.049 60.000 11.31 10.25 39.35 4.61
1200 1220 1.066858 CAGCAGGAAGTATGTGACGGT 60.067 52.381 0.00 0.00 0.00 4.83
1202 1222 1.067142 GCAGGAAGTATGTGACGGTCA 60.067 52.381 6.76 6.76 0.00 4.02
1209 1229 5.291128 GGAAGTATGTGACGGTCATTAGTTG 59.709 44.000 14.78 0.00 0.00 3.16
1244 1264 3.175710 AAGGTTGCCCGTGGAGGT 61.176 61.111 0.00 0.00 38.74 3.85
1246 1266 4.265056 GGTTGCCCGTGGAGGTGT 62.265 66.667 0.00 0.00 38.74 4.16
1320 1340 0.602638 TCAAGTCAATGCTCGCCGTT 60.603 50.000 0.00 0.00 0.00 4.44
1348 1368 2.109799 AAGGCATCGGCTGGATCG 59.890 61.111 0.00 0.00 38.81 3.69
1366 1386 6.406370 TGGATCGTTGAAGATAATTGACACT 58.594 36.000 0.00 0.00 0.00 3.55
1413 1433 7.929245 TCAAATGTCTAGCTAATTGGCGTATTA 59.071 33.333 8.26 0.00 37.29 0.98
1428 1450 4.331717 GGCGTATTATGTACACTTTGTGCT 59.668 41.667 0.00 0.00 36.98 4.40
1478 1500 2.291540 CCATAGGTCTTCCTTTTGGCCA 60.292 50.000 0.00 0.00 42.12 5.36
1484 1506 4.904853 AGGTCTTCCTTTTGGCCATTTTAA 59.095 37.500 6.09 0.00 42.12 1.52
1490 1512 4.283212 TCCTTTTGGCCATTTTAAGACCTG 59.717 41.667 6.09 0.00 40.12 4.00
1685 1770 8.133024 TGAAAATAGCATGAAATAGGGTTTGT 57.867 30.769 0.00 0.00 0.00 2.83
1701 1786 3.699538 GGTTTGTTCCTATTCATGGGGAC 59.300 47.826 0.00 0.00 37.43 4.46
1728 1813 8.132362 TCCGTAAATATCCCATTTCAAAAATCG 58.868 33.333 0.00 0.00 0.00 3.34
1735 1820 6.836577 TCCCATTTCAAAAATCGAAACAAC 57.163 33.333 0.00 0.00 35.31 3.32
1768 1853 9.547279 AGGGAAAAACATAGGAATTCTACAATT 57.453 29.630 5.23 0.00 34.70 2.32
1800 1885 9.129209 GAACCACTTTCTTAAATTTCTATGCAC 57.871 33.333 0.00 0.00 0.00 4.57
1911 2000 4.452455 CACACACTTCACCAAGGAGAATAC 59.548 45.833 0.00 0.00 33.37 1.89
1930 2019 2.545810 ACTAGCTTTGCCTTCTCTCCT 58.454 47.619 0.00 0.00 0.00 3.69
1950 2039 6.069673 TCTCCTGGTGAAAACACATATGGTAT 60.070 38.462 7.80 0.00 0.00 2.73
2020 2115 7.749126 GCTTAAATAACACCTACACATCAACAC 59.251 37.037 0.00 0.00 0.00 3.32
2029 2124 2.517959 ACACATCAACACATTCCCCAG 58.482 47.619 0.00 0.00 0.00 4.45
2030 2125 1.203052 CACATCAACACATTCCCCAGC 59.797 52.381 0.00 0.00 0.00 4.85
2040 2135 2.172229 ATTCCCCAGCCACCATGCTT 62.172 55.000 0.00 0.00 40.32 3.91
2070 2165 2.617774 GGCGTGGTAACCAAACACTAAA 59.382 45.455 0.00 0.00 34.18 1.85
2114 2314 4.284490 TCCTATAATCACTCCAGGATGCAC 59.716 45.833 0.00 0.00 30.43 4.57
2129 2329 2.566833 TGCACAAGACTAGCCAACAT 57.433 45.000 0.00 0.00 0.00 2.71
2131 2331 1.135575 GCACAAGACTAGCCAACATGC 60.136 52.381 0.00 0.00 0.00 4.06
2132 2332 2.430465 CACAAGACTAGCCAACATGCT 58.570 47.619 0.00 0.00 45.38 3.79
2133 2333 3.599343 CACAAGACTAGCCAACATGCTA 58.401 45.455 0.00 0.00 42.75 3.49
2134 2334 4.002982 CACAAGACTAGCCAACATGCTAA 58.997 43.478 0.00 0.00 42.93 3.09
2135 2335 4.003648 ACAAGACTAGCCAACATGCTAAC 58.996 43.478 0.00 0.00 42.93 2.34
2136 2336 3.981071 AGACTAGCCAACATGCTAACA 57.019 42.857 0.00 0.00 42.93 2.41
2137 2337 3.600388 AGACTAGCCAACATGCTAACAC 58.400 45.455 0.00 0.00 42.93 3.32
2138 2338 3.007940 AGACTAGCCAACATGCTAACACA 59.992 43.478 0.00 0.00 42.93 3.72
2139 2339 3.074412 ACTAGCCAACATGCTAACACAC 58.926 45.455 0.00 0.00 42.93 3.82
2140 2340 0.874390 AGCCAACATGCTAACACACG 59.126 50.000 0.00 0.00 40.56 4.49
2141 2341 0.729140 GCCAACATGCTAACACACGC 60.729 55.000 0.00 0.00 0.00 5.34
2142 2342 0.590682 CCAACATGCTAACACACGCA 59.409 50.000 0.00 0.00 40.87 5.24
2143 2343 1.199789 CCAACATGCTAACACACGCAT 59.800 47.619 0.00 0.00 46.98 4.73
2148 2348 2.679355 TGCTAACACACGCATGAAAC 57.321 45.000 0.00 0.00 0.00 2.78
2149 2349 2.217750 TGCTAACACACGCATGAAACT 58.782 42.857 0.00 0.00 0.00 2.66
2150 2350 3.394719 TGCTAACACACGCATGAAACTA 58.605 40.909 0.00 0.00 0.00 2.24
2151 2351 3.431912 TGCTAACACACGCATGAAACTAG 59.568 43.478 0.00 0.00 0.00 2.57
2152 2352 2.969443 AACACACGCATGAAACTAGC 57.031 45.000 0.00 0.00 0.00 3.42
2153 2353 1.877637 ACACACGCATGAAACTAGCA 58.122 45.000 0.00 0.00 0.00 3.49
2154 2354 1.531149 ACACACGCATGAAACTAGCAC 59.469 47.619 0.00 0.00 0.00 4.40
2155 2355 1.530720 CACACGCATGAAACTAGCACA 59.469 47.619 0.00 0.00 0.00 4.57
2156 2356 1.531149 ACACGCATGAAACTAGCACAC 59.469 47.619 0.00 0.00 0.00 3.82
2157 2357 1.135972 CACGCATGAAACTAGCACACC 60.136 52.381 0.00 0.00 0.00 4.16
2158 2358 1.155889 CGCATGAAACTAGCACACCA 58.844 50.000 0.00 0.00 0.00 4.17
2164 2364 5.565439 GCATGAAACTAGCACACCAATTCTT 60.565 40.000 0.00 0.00 0.00 2.52
2169 2369 0.598065 AGCACACCAATTCTTTCGGC 59.402 50.000 0.00 0.00 0.00 5.54
2193 2393 4.258702 ACACTTCTACAGCTCGTTGATT 57.741 40.909 0.00 0.00 0.00 2.57
2215 2415 2.910199 TGAGCACCTGCACTGATAATC 58.090 47.619 0.00 0.00 45.16 1.75
2310 2510 4.214971 GTGCATGACATCCATCCATCTAAC 59.785 45.833 0.00 0.00 31.94 2.34
2311 2511 4.141436 TGCATGACATCCATCCATCTAACA 60.141 41.667 0.00 0.00 31.94 2.41
2312 2512 4.214971 GCATGACATCCATCCATCTAACAC 59.785 45.833 0.00 0.00 31.94 3.32
2313 2513 5.618236 CATGACATCCATCCATCTAACACT 58.382 41.667 0.00 0.00 31.94 3.55
2314 2514 5.698741 TGACATCCATCCATCTAACACTT 57.301 39.130 0.00 0.00 0.00 3.16
2315 2515 6.806668 TGACATCCATCCATCTAACACTTA 57.193 37.500 0.00 0.00 0.00 2.24
2316 2516 7.379059 TGACATCCATCCATCTAACACTTAT 57.621 36.000 0.00 0.00 0.00 1.73
2317 2517 7.445121 TGACATCCATCCATCTAACACTTATC 58.555 38.462 0.00 0.00 0.00 1.75
2318 2518 7.071071 TGACATCCATCCATCTAACACTTATCA 59.929 37.037 0.00 0.00 0.00 2.15
2319 2519 7.982252 ACATCCATCCATCTAACACTTATCAT 58.018 34.615 0.00 0.00 0.00 2.45
2320 2520 7.881751 ACATCCATCCATCTAACACTTATCATG 59.118 37.037 0.00 0.00 0.00 3.07
2321 2521 7.379059 TCCATCCATCTAACACTTATCATGT 57.621 36.000 0.00 0.00 0.00 3.21
2322 2522 8.491045 TCCATCCATCTAACACTTATCATGTA 57.509 34.615 0.00 0.00 0.00 2.29
2323 2523 8.933653 TCCATCCATCTAACACTTATCATGTAA 58.066 33.333 0.00 0.00 0.00 2.41
2324 2524 9.212641 CCATCCATCTAACACTTATCATGTAAG 57.787 37.037 11.28 11.28 0.00 2.34
2325 2525 9.212641 CATCCATCTAACACTTATCATGTAAGG 57.787 37.037 15.13 9.25 0.00 2.69
2326 2526 8.547481 TCCATCTAACACTTATCATGTAAGGA 57.453 34.615 15.13 0.00 0.00 3.36
2327 2527 8.988060 TCCATCTAACACTTATCATGTAAGGAA 58.012 33.333 15.13 2.77 0.00 3.36
2328 2528 9.784531 CCATCTAACACTTATCATGTAAGGAAT 57.215 33.333 15.13 6.84 0.00 3.01
2337 2537 8.903820 ACTTATCATGTAAGGAATAAAACAGGC 58.096 33.333 15.13 0.00 0.00 4.85
2338 2538 6.715347 ATCATGTAAGGAATAAAACAGGCC 57.285 37.500 0.00 0.00 0.00 5.19
2339 2539 5.826643 TCATGTAAGGAATAAAACAGGCCT 58.173 37.500 0.00 0.00 0.00 5.19
2340 2540 5.652014 TCATGTAAGGAATAAAACAGGCCTG 59.348 40.000 31.60 31.60 0.00 4.85
2341 2541 5.249780 TGTAAGGAATAAAACAGGCCTGA 57.750 39.130 39.19 17.61 0.00 3.86
2342 2542 5.636123 TGTAAGGAATAAAACAGGCCTGAA 58.364 37.500 39.19 20.35 0.00 3.02
2343 2543 5.710099 TGTAAGGAATAAAACAGGCCTGAAG 59.290 40.000 39.19 14.00 0.00 3.02
2344 2544 3.092301 AGGAATAAAACAGGCCTGAAGC 58.908 45.455 39.19 18.45 42.60 3.86
2345 2545 3.092301 GGAATAAAACAGGCCTGAAGCT 58.908 45.455 39.19 20.83 43.05 3.74
2346 2546 3.511540 GGAATAAAACAGGCCTGAAGCTT 59.488 43.478 39.19 24.47 43.05 3.74
2351 2551 1.962144 CAGGCCTGAAGCTTGTTGG 59.038 57.895 29.88 4.01 43.36 3.77
2352 2552 0.538057 CAGGCCTGAAGCTTGTTGGA 60.538 55.000 29.88 0.00 43.36 3.53
2353 2553 0.407139 AGGCCTGAAGCTTGTTGGAT 59.593 50.000 3.11 0.00 43.05 3.41
2354 2554 0.813821 GGCCTGAAGCTTGTTGGATC 59.186 55.000 2.10 0.00 43.05 3.36
2355 2555 1.538047 GCCTGAAGCTTGTTGGATCA 58.462 50.000 2.10 0.00 38.99 2.92
2356 2556 1.200948 GCCTGAAGCTTGTTGGATCAC 59.799 52.381 2.10 0.00 38.99 3.06
2357 2557 2.507484 CCTGAAGCTTGTTGGATCACA 58.493 47.619 2.10 0.00 0.00 3.58
2358 2558 2.486982 CCTGAAGCTTGTTGGATCACAG 59.513 50.000 2.10 0.95 0.00 3.66
2359 2559 2.486982 CTGAAGCTTGTTGGATCACAGG 59.513 50.000 2.10 0.00 0.00 4.00
2361 2561 1.885871 GCTTGTTGGATCACAGGCC 59.114 57.895 8.58 0.00 42.47 5.19
2362 2562 1.926511 GCTTGTTGGATCACAGGCCG 61.927 60.000 8.58 0.00 42.47 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.618241 GACCAAACATGCAGAAGACACA 59.382 45.455 0.00 0.00 0.00 3.72
2 3 2.929641 TGACCAAACATGCAGAAGACA 58.070 42.857 0.00 0.00 0.00 3.41
3 4 3.565482 TCTTGACCAAACATGCAGAAGAC 59.435 43.478 0.00 0.00 0.00 3.01
4 5 3.819368 TCTTGACCAAACATGCAGAAGA 58.181 40.909 0.00 0.00 0.00 2.87
5 6 4.543692 CTTCTTGACCAAACATGCAGAAG 58.456 43.478 0.00 0.00 31.00 2.85
6 7 3.318839 CCTTCTTGACCAAACATGCAGAA 59.681 43.478 0.00 0.00 0.00 3.02
7 8 2.886523 CCTTCTTGACCAAACATGCAGA 59.113 45.455 0.00 0.00 0.00 4.26
8 9 2.886523 TCCTTCTTGACCAAACATGCAG 59.113 45.455 0.00 0.00 0.00 4.41
9 10 2.942804 TCCTTCTTGACCAAACATGCA 58.057 42.857 0.00 0.00 0.00 3.96
10 11 3.507233 TCATCCTTCTTGACCAAACATGC 59.493 43.478 0.00 0.00 0.00 4.06
11 12 5.909621 ATCATCCTTCTTGACCAAACATG 57.090 39.130 0.00 0.00 0.00 3.21
12 13 7.405292 TCTTATCATCCTTCTTGACCAAACAT 58.595 34.615 0.00 0.00 0.00 2.71
13 14 6.778821 TCTTATCATCCTTCTTGACCAAACA 58.221 36.000 0.00 0.00 0.00 2.83
14 15 6.317391 CCTCTTATCATCCTTCTTGACCAAAC 59.683 42.308 0.00 0.00 0.00 2.93
15 16 6.215431 TCCTCTTATCATCCTTCTTGACCAAA 59.785 38.462 0.00 0.00 0.00 3.28
16 17 5.726308 TCCTCTTATCATCCTTCTTGACCAA 59.274 40.000 0.00 0.00 0.00 3.67
17 18 5.280499 TCCTCTTATCATCCTTCTTGACCA 58.720 41.667 0.00 0.00 0.00 4.02
18 19 5.600484 TCTCCTCTTATCATCCTTCTTGACC 59.400 44.000 0.00 0.00 0.00 4.02
19 20 6.723298 TCTCCTCTTATCATCCTTCTTGAC 57.277 41.667 0.00 0.00 0.00 3.18
20 21 7.346698 ACAATCTCCTCTTATCATCCTTCTTGA 59.653 37.037 0.00 0.00 0.00 3.02
21 22 7.507829 ACAATCTCCTCTTATCATCCTTCTTG 58.492 38.462 0.00 0.00 0.00 3.02
22 23 7.688918 ACAATCTCCTCTTATCATCCTTCTT 57.311 36.000 0.00 0.00 0.00 2.52
23 24 7.419981 CCAACAATCTCCTCTTATCATCCTTCT 60.420 40.741 0.00 0.00 0.00 2.85
24 25 6.709846 CCAACAATCTCCTCTTATCATCCTTC 59.290 42.308 0.00 0.00 0.00 3.46
25 26 6.599445 CCAACAATCTCCTCTTATCATCCTT 58.401 40.000 0.00 0.00 0.00 3.36
26 27 5.455899 GCCAACAATCTCCTCTTATCATCCT 60.456 44.000 0.00 0.00 0.00 3.24
27 28 4.759183 GCCAACAATCTCCTCTTATCATCC 59.241 45.833 0.00 0.00 0.00 3.51
28 29 4.759183 GGCCAACAATCTCCTCTTATCATC 59.241 45.833 0.00 0.00 0.00 2.92
29 30 4.166725 TGGCCAACAATCTCCTCTTATCAT 59.833 41.667 0.61 0.00 0.00 2.45
30 31 3.523157 TGGCCAACAATCTCCTCTTATCA 59.477 43.478 0.61 0.00 0.00 2.15
31 32 3.879892 GTGGCCAACAATCTCCTCTTATC 59.120 47.826 7.24 0.00 0.00 1.75
32 33 3.266772 TGTGGCCAACAATCTCCTCTTAT 59.733 43.478 7.24 0.00 35.24 1.73
33 34 2.642311 TGTGGCCAACAATCTCCTCTTA 59.358 45.455 7.24 0.00 35.24 2.10
34 35 1.425066 TGTGGCCAACAATCTCCTCTT 59.575 47.619 7.24 0.00 35.24 2.85
35 36 1.067295 TGTGGCCAACAATCTCCTCT 58.933 50.000 7.24 0.00 35.24 3.69
36 37 1.168714 GTGTGGCCAACAATCTCCTC 58.831 55.000 7.24 0.00 41.57 3.71
37 38 0.478072 TGTGTGGCCAACAATCTCCT 59.522 50.000 7.24 0.00 41.57 3.69
38 39 1.549203 ATGTGTGGCCAACAATCTCC 58.451 50.000 19.94 2.23 41.57 3.71
39 40 6.262944 TCAATATATGTGTGGCCAACAATCTC 59.737 38.462 19.94 5.37 41.57 2.75
40 41 6.128486 TCAATATATGTGTGGCCAACAATCT 58.872 36.000 19.94 10.00 41.57 2.40
41 42 6.389830 TCAATATATGTGTGGCCAACAATC 57.610 37.500 19.94 4.30 41.57 2.67
42 43 6.380846 ACTTCAATATATGTGTGGCCAACAAT 59.619 34.615 19.94 16.45 41.57 2.71
43 44 5.714333 ACTTCAATATATGTGTGGCCAACAA 59.286 36.000 19.94 12.23 41.57 2.83
44 45 5.260424 ACTTCAATATATGTGTGGCCAACA 58.740 37.500 7.24 15.14 36.04 3.33
45 46 5.835113 ACTTCAATATATGTGTGGCCAAC 57.165 39.130 7.24 9.18 0.00 3.77
46 47 7.998383 AGATTACTTCAATATATGTGTGGCCAA 59.002 33.333 7.24 0.00 0.00 4.52
47 48 7.445096 CAGATTACTTCAATATATGTGTGGCCA 59.555 37.037 0.00 0.00 0.00 5.36
48 49 7.445402 ACAGATTACTTCAATATATGTGTGGCC 59.555 37.037 0.00 0.00 0.00 5.36
49 50 8.383318 ACAGATTACTTCAATATATGTGTGGC 57.617 34.615 0.00 0.00 0.00 5.01
58 59 9.739276 TGGTCAAAGAACAGATTACTTCAATAT 57.261 29.630 0.00 0.00 0.00 1.28
59 60 9.739276 ATGGTCAAAGAACAGATTACTTCAATA 57.261 29.630 0.00 0.00 30.70 1.90
60 61 8.517878 CATGGTCAAAGAACAGATTACTTCAAT 58.482 33.333 0.00 0.00 30.70 2.57
61 62 7.502226 ACATGGTCAAAGAACAGATTACTTCAA 59.498 33.333 0.00 0.00 30.70 2.69
62 63 6.998074 ACATGGTCAAAGAACAGATTACTTCA 59.002 34.615 0.00 0.00 30.70 3.02
63 64 7.041098 ACACATGGTCAAAGAACAGATTACTTC 60.041 37.037 0.00 0.00 30.70 3.01
64 65 6.772716 ACACATGGTCAAAGAACAGATTACTT 59.227 34.615 0.00 0.00 30.70 2.24
65 66 6.299141 ACACATGGTCAAAGAACAGATTACT 58.701 36.000 0.00 0.00 30.70 2.24
66 67 6.560253 ACACATGGTCAAAGAACAGATTAC 57.440 37.500 0.00 0.00 30.70 1.89
67 68 8.862325 AATACACATGGTCAAAGAACAGATTA 57.138 30.769 0.00 0.00 30.70 1.75
68 69 7.765695 AATACACATGGTCAAAGAACAGATT 57.234 32.000 0.00 0.00 30.70 2.40
69 70 7.765695 AAATACACATGGTCAAAGAACAGAT 57.234 32.000 0.00 0.00 30.70 2.90
70 71 7.581213 AAAATACACATGGTCAAAGAACAGA 57.419 32.000 0.00 0.00 30.70 3.41
71 72 7.920151 TGAAAAATACACATGGTCAAAGAACAG 59.080 33.333 0.00 0.00 30.70 3.16
72 73 7.704472 GTGAAAAATACACATGGTCAAAGAACA 59.296 33.333 0.00 0.00 38.05 3.18
73 74 7.704472 TGTGAAAAATACACATGGTCAAAGAAC 59.296 33.333 0.00 0.00 42.20 3.01
74 75 7.776107 TGTGAAAAATACACATGGTCAAAGAA 58.224 30.769 0.00 0.00 42.20 2.52
75 76 7.340122 TGTGAAAAATACACATGGTCAAAGA 57.660 32.000 0.00 0.00 42.20 2.52
76 77 8.417780 TTTGTGAAAAATACACATGGTCAAAG 57.582 30.769 0.00 0.00 45.52 2.77
77 78 8.954950 ATTTGTGAAAAATACACATGGTCAAA 57.045 26.923 0.00 0.00 45.52 2.69
78 79 8.824781 CAATTTGTGAAAAATACACATGGTCAA 58.175 29.630 0.00 0.00 45.52 3.18
79 80 8.200120 TCAATTTGTGAAAAATACACATGGTCA 58.800 29.630 0.00 0.00 45.52 4.02
80 81 8.586570 TCAATTTGTGAAAAATACACATGGTC 57.413 30.769 0.00 0.00 45.52 4.02
110 111 9.890629 CGGGATAGGATATTTAAATCTGATTGA 57.109 33.333 3.39 0.00 0.00 2.57
111 112 8.616076 GCGGGATAGGATATTTAAATCTGATTG 58.384 37.037 3.39 0.00 0.00 2.67
112 113 8.328758 TGCGGGATAGGATATTTAAATCTGATT 58.671 33.333 3.39 0.00 0.00 2.57
113 114 7.770897 GTGCGGGATAGGATATTTAAATCTGAT 59.229 37.037 3.39 0.00 0.00 2.90
114 115 7.103641 GTGCGGGATAGGATATTTAAATCTGA 58.896 38.462 3.39 0.00 0.00 3.27
115 116 6.878923 TGTGCGGGATAGGATATTTAAATCTG 59.121 38.462 3.39 0.00 0.00 2.90
116 117 7.016153 TGTGCGGGATAGGATATTTAAATCT 57.984 36.000 3.39 0.00 0.00 2.40
117 118 7.336931 ACATGTGCGGGATAGGATATTTAAATC 59.663 37.037 3.39 0.00 0.00 2.17
118 119 7.175104 ACATGTGCGGGATAGGATATTTAAAT 58.825 34.615 5.89 5.89 0.00 1.40
119 120 6.539173 ACATGTGCGGGATAGGATATTTAAA 58.461 36.000 0.00 0.00 0.00 1.52
120 121 6.121776 ACATGTGCGGGATAGGATATTTAA 57.878 37.500 0.00 0.00 0.00 1.52
121 122 5.755409 ACATGTGCGGGATAGGATATTTA 57.245 39.130 0.00 0.00 0.00 1.40
122 123 4.640771 ACATGTGCGGGATAGGATATTT 57.359 40.909 0.00 0.00 0.00 1.40
123 124 4.640771 AACATGTGCGGGATAGGATATT 57.359 40.909 0.00 0.00 0.00 1.28
124 125 4.640771 AAACATGTGCGGGATAGGATAT 57.359 40.909 0.00 0.00 0.00 1.63
125 126 4.102524 AGAAAACATGTGCGGGATAGGATA 59.897 41.667 0.00 0.00 0.00 2.59
126 127 3.117888 AGAAAACATGTGCGGGATAGGAT 60.118 43.478 0.00 0.00 0.00 3.24
127 128 2.238646 AGAAAACATGTGCGGGATAGGA 59.761 45.455 0.00 0.00 0.00 2.94
128 129 2.355756 CAGAAAACATGTGCGGGATAGG 59.644 50.000 0.00 0.00 0.00 2.57
129 130 3.009723 ACAGAAAACATGTGCGGGATAG 58.990 45.455 0.00 0.00 0.00 2.08
130 131 2.746904 CACAGAAAACATGTGCGGGATA 59.253 45.455 0.00 0.00 41.39 2.59
131 132 1.541147 CACAGAAAACATGTGCGGGAT 59.459 47.619 0.00 0.00 41.39 3.85
132 133 0.950836 CACAGAAAACATGTGCGGGA 59.049 50.000 0.00 0.00 41.39 5.14
133 134 3.477504 CACAGAAAACATGTGCGGG 57.522 52.632 0.00 0.00 41.39 6.13
144 145 9.959749 GTCCATTAAGTAATTCAAACACAGAAA 57.040 29.630 0.00 0.00 0.00 2.52
145 146 8.573035 GGTCCATTAAGTAATTCAAACACAGAA 58.427 33.333 0.00 0.00 0.00 3.02
146 147 7.942341 AGGTCCATTAAGTAATTCAAACACAGA 59.058 33.333 0.00 0.00 0.00 3.41
147 148 8.023128 CAGGTCCATTAAGTAATTCAAACACAG 58.977 37.037 0.00 0.00 0.00 3.66
148 149 7.040062 CCAGGTCCATTAAGTAATTCAAACACA 60.040 37.037 0.00 0.00 0.00 3.72
149 150 7.039993 ACCAGGTCCATTAAGTAATTCAAACAC 60.040 37.037 0.00 0.00 0.00 3.32
150 151 7.007723 ACCAGGTCCATTAAGTAATTCAAACA 58.992 34.615 0.00 0.00 0.00 2.83
151 152 7.462571 ACCAGGTCCATTAAGTAATTCAAAC 57.537 36.000 0.00 0.00 0.00 2.93
152 153 9.238368 CTTACCAGGTCCATTAAGTAATTCAAA 57.762 33.333 0.00 0.00 0.00 2.69
153 154 8.607713 TCTTACCAGGTCCATTAAGTAATTCAA 58.392 33.333 0.00 0.00 0.00 2.69
154 155 8.153221 TCTTACCAGGTCCATTAAGTAATTCA 57.847 34.615 0.00 0.00 0.00 2.57
155 156 8.483758 TCTCTTACCAGGTCCATTAAGTAATTC 58.516 37.037 0.00 0.00 0.00 2.17
156 157 8.265764 GTCTCTTACCAGGTCCATTAAGTAATT 58.734 37.037 0.00 0.00 0.00 1.40
157 158 7.624077 AGTCTCTTACCAGGTCCATTAAGTAAT 59.376 37.037 0.00 0.00 0.00 1.89
158 159 6.958192 AGTCTCTTACCAGGTCCATTAAGTAA 59.042 38.462 0.00 0.00 0.00 2.24
159 160 6.500336 AGTCTCTTACCAGGTCCATTAAGTA 58.500 40.000 0.00 0.00 0.00 2.24
160 161 5.342866 AGTCTCTTACCAGGTCCATTAAGT 58.657 41.667 0.00 0.00 0.00 2.24
161 162 5.941555 AGTCTCTTACCAGGTCCATTAAG 57.058 43.478 0.00 0.00 0.00 1.85
162 163 5.783360 TCAAGTCTCTTACCAGGTCCATTAA 59.217 40.000 0.00 0.00 0.00 1.40
163 164 5.338632 TCAAGTCTCTTACCAGGTCCATTA 58.661 41.667 0.00 0.00 0.00 1.90
164 165 4.168101 TCAAGTCTCTTACCAGGTCCATT 58.832 43.478 0.00 0.00 0.00 3.16
165 166 3.791320 TCAAGTCTCTTACCAGGTCCAT 58.209 45.455 0.00 0.00 0.00 3.41
166 167 3.254093 TCAAGTCTCTTACCAGGTCCA 57.746 47.619 0.00 0.00 0.00 4.02
167 168 4.828072 AATCAAGTCTCTTACCAGGTCC 57.172 45.455 0.00 0.00 0.00 4.46
168 169 6.468543 AGAAAATCAAGTCTCTTACCAGGTC 58.531 40.000 0.00 0.00 0.00 3.85
169 170 6.441088 AGAAAATCAAGTCTCTTACCAGGT 57.559 37.500 0.00 0.00 0.00 4.00
170 171 8.887717 CATAAGAAAATCAAGTCTCTTACCAGG 58.112 37.037 0.00 0.00 34.20 4.45
171 172 9.658799 TCATAAGAAAATCAAGTCTCTTACCAG 57.341 33.333 0.00 0.00 34.20 4.00
188 189 9.474920 CATGCAAAGTAACCTTTTCATAAGAAA 57.525 29.630 0.00 0.00 40.88 2.52
189 190 8.087750 CCATGCAAAGTAACCTTTTCATAAGAA 58.912 33.333 0.00 0.00 40.88 2.52
190 191 7.450014 TCCATGCAAAGTAACCTTTTCATAAGA 59.550 33.333 0.00 0.23 40.88 2.10
191 192 7.601856 TCCATGCAAAGTAACCTTTTCATAAG 58.398 34.615 0.00 0.00 40.88 1.73
192 193 7.531857 TCCATGCAAAGTAACCTTTTCATAA 57.468 32.000 0.00 0.00 40.88 1.90
193 194 7.531857 TTCCATGCAAAGTAACCTTTTCATA 57.468 32.000 0.00 0.00 40.88 2.15
194 195 6.418057 TTCCATGCAAAGTAACCTTTTCAT 57.582 33.333 0.00 0.00 42.71 2.57
195 196 5.860941 TTCCATGCAAAGTAACCTTTTCA 57.139 34.783 0.00 0.00 38.87 2.69
196 197 6.983890 TCTTTTCCATGCAAAGTAACCTTTTC 59.016 34.615 12.78 0.00 38.87 2.29
197 198 6.883744 TCTTTTCCATGCAAAGTAACCTTTT 58.116 32.000 12.78 0.00 38.87 2.27
198 199 6.462909 CCTCTTTTCCATGCAAAGTAACCTTT 60.463 38.462 12.78 0.00 41.62 3.11
199 200 5.011023 CCTCTTTTCCATGCAAAGTAACCTT 59.989 40.000 12.78 0.00 33.61 3.50
200 201 4.524328 CCTCTTTTCCATGCAAAGTAACCT 59.476 41.667 12.78 0.00 33.61 3.50
201 202 4.280929 ACCTCTTTTCCATGCAAAGTAACC 59.719 41.667 12.78 0.00 33.61 2.85
202 203 5.453567 ACCTCTTTTCCATGCAAAGTAAC 57.546 39.130 12.78 0.00 33.61 2.50
203 204 6.539173 TCTACCTCTTTTCCATGCAAAGTAA 58.461 36.000 12.78 0.00 33.61 2.24
204 205 6.121776 TCTACCTCTTTTCCATGCAAAGTA 57.878 37.500 12.78 0.00 33.61 2.24
205 206 4.985538 TCTACCTCTTTTCCATGCAAAGT 58.014 39.130 12.78 0.00 33.61 2.66
206 207 7.630242 TTATCTACCTCTTTTCCATGCAAAG 57.370 36.000 8.61 8.61 33.22 2.77
207 208 8.415950 TTTTATCTACCTCTTTTCCATGCAAA 57.584 30.769 0.00 0.00 0.00 3.68
208 209 8.415950 TTTTTATCTACCTCTTTTCCATGCAA 57.584 30.769 0.00 0.00 0.00 4.08
209 210 7.669722 ACTTTTTATCTACCTCTTTTCCATGCA 59.330 33.333 0.00 0.00 0.00 3.96
210 211 8.056407 ACTTTTTATCTACCTCTTTTCCATGC 57.944 34.615 0.00 0.00 0.00 4.06
212 213 9.682465 GGTACTTTTTATCTACCTCTTTTCCAT 57.318 33.333 0.00 0.00 0.00 3.41
213 214 8.662255 TGGTACTTTTTATCTACCTCTTTTCCA 58.338 33.333 0.00 0.00 32.50 3.53
214 215 9.682465 ATGGTACTTTTTATCTACCTCTTTTCC 57.318 33.333 0.00 0.00 32.50 3.13
219 220 9.490083 ACTACATGGTACTTTTTATCTACCTCT 57.510 33.333 0.00 0.00 32.50 3.69
243 244 8.837389 GGTTGACAAACTTTATCTCAACTTACT 58.163 33.333 0.00 0.00 40.31 2.24
244 245 8.074370 GGGTTGACAAACTTTATCTCAACTTAC 58.926 37.037 2.68 0.00 40.31 2.34
245 246 7.776030 TGGGTTGACAAACTTTATCTCAACTTA 59.224 33.333 2.68 0.00 40.31 2.24
246 247 6.605594 TGGGTTGACAAACTTTATCTCAACTT 59.394 34.615 2.68 0.00 40.31 2.66
247 248 6.126409 TGGGTTGACAAACTTTATCTCAACT 58.874 36.000 2.68 0.00 40.31 3.16
248 249 6.385649 TGGGTTGACAAACTTTATCTCAAC 57.614 37.500 2.68 0.00 39.91 3.18
249 250 7.340743 TCTTTGGGTTGACAAACTTTATCTCAA 59.659 33.333 2.68 0.00 35.57 3.02
250 251 6.831353 TCTTTGGGTTGACAAACTTTATCTCA 59.169 34.615 2.68 0.00 35.57 3.27
251 252 7.272037 TCTTTGGGTTGACAAACTTTATCTC 57.728 36.000 2.68 0.00 35.57 2.75
252 253 7.839680 ATCTTTGGGTTGACAAACTTTATCT 57.160 32.000 2.68 0.00 35.57 1.98
253 254 7.926018 ACAATCTTTGGGTTGACAAACTTTATC 59.074 33.333 2.68 0.00 35.57 1.75
254 255 7.791029 ACAATCTTTGGGTTGACAAACTTTAT 58.209 30.769 2.68 0.00 35.57 1.40
255 256 7.176589 ACAATCTTTGGGTTGACAAACTTTA 57.823 32.000 2.68 0.00 35.57 1.85
256 257 6.048732 ACAATCTTTGGGTTGACAAACTTT 57.951 33.333 2.68 0.00 35.57 2.66
257 258 5.675684 ACAATCTTTGGGTTGACAAACTT 57.324 34.783 2.68 0.00 35.57 2.66
258 259 5.675684 AACAATCTTTGGGTTGACAAACT 57.324 34.783 2.68 0.00 35.57 2.66
259 260 5.064579 CCAAACAATCTTTGGGTTGACAAAC 59.935 40.000 4.20 0.00 43.88 2.93
260 261 5.181748 CCAAACAATCTTTGGGTTGACAAA 58.818 37.500 4.20 0.00 43.88 2.83
261 262 4.764172 CCAAACAATCTTTGGGTTGACAA 58.236 39.130 4.20 0.00 43.88 3.18
262 263 4.399004 CCAAACAATCTTTGGGTTGACA 57.601 40.909 4.20 0.00 43.88 3.58
270 271 2.965147 ACTCCCCACCAAACAATCTTTG 59.035 45.455 0.00 0.00 0.00 2.77
271 272 2.965147 CACTCCCCACCAAACAATCTTT 59.035 45.455 0.00 0.00 0.00 2.52
272 273 2.176798 TCACTCCCCACCAAACAATCTT 59.823 45.455 0.00 0.00 0.00 2.40
273 274 1.780309 TCACTCCCCACCAAACAATCT 59.220 47.619 0.00 0.00 0.00 2.40
274 275 2.286365 TCACTCCCCACCAAACAATC 57.714 50.000 0.00 0.00 0.00 2.67
275 276 2.999185 ATCACTCCCCACCAAACAAT 57.001 45.000 0.00 0.00 0.00 2.71
276 277 2.443632 TGTATCACTCCCCACCAAACAA 59.556 45.455 0.00 0.00 0.00 2.83
277 278 2.058705 TGTATCACTCCCCACCAAACA 58.941 47.619 0.00 0.00 0.00 2.83
278 279 2.871096 TGTATCACTCCCCACCAAAC 57.129 50.000 0.00 0.00 0.00 2.93
279 280 3.621214 CGATTGTATCACTCCCCACCAAA 60.621 47.826 0.00 0.00 0.00 3.28
280 281 2.093181 CGATTGTATCACTCCCCACCAA 60.093 50.000 0.00 0.00 0.00 3.67
281 282 1.484653 CGATTGTATCACTCCCCACCA 59.515 52.381 0.00 0.00 0.00 4.17
282 283 1.760613 TCGATTGTATCACTCCCCACC 59.239 52.381 0.00 0.00 0.00 4.61
283 284 3.322254 AGATCGATTGTATCACTCCCCAC 59.678 47.826 0.00 0.00 0.00 4.61
284 285 3.574396 GAGATCGATTGTATCACTCCCCA 59.426 47.826 0.00 0.00 0.00 4.96
285 286 3.574396 TGAGATCGATTGTATCACTCCCC 59.426 47.826 0.00 0.00 0.00 4.81
286 287 4.855715 TGAGATCGATTGTATCACTCCC 57.144 45.455 0.00 0.00 0.00 4.30
287 288 6.219473 ACATTGAGATCGATTGTATCACTCC 58.781 40.000 0.00 0.00 0.00 3.85
288 289 7.706281 AACATTGAGATCGATTGTATCACTC 57.294 36.000 0.00 0.00 0.00 3.51
289 290 9.254133 CTTAACATTGAGATCGATTGTATCACT 57.746 33.333 0.00 0.00 0.00 3.41
290 291 9.035607 ACTTAACATTGAGATCGATTGTATCAC 57.964 33.333 0.00 0.00 0.00 3.06
295 296 9.599866 TTGATACTTAACATTGAGATCGATTGT 57.400 29.630 0.00 0.00 0.00 2.71
298 299 9.689976 CTCTTGATACTTAACATTGAGATCGAT 57.310 33.333 0.00 0.00 0.00 3.59
299 300 8.138074 CCTCTTGATACTTAACATTGAGATCGA 58.862 37.037 0.00 0.00 0.00 3.59
300 301 7.383572 CCCTCTTGATACTTAACATTGAGATCG 59.616 40.741 0.00 0.00 0.00 3.69
301 302 8.207545 ACCCTCTTGATACTTAACATTGAGATC 58.792 37.037 0.00 0.00 0.00 2.75
302 303 8.095452 ACCCTCTTGATACTTAACATTGAGAT 57.905 34.615 0.00 0.00 0.00 2.75
303 304 7.496346 ACCCTCTTGATACTTAACATTGAGA 57.504 36.000 0.00 0.00 0.00 3.27
304 305 7.066284 CCAACCCTCTTGATACTTAACATTGAG 59.934 40.741 0.00 0.00 0.00 3.02
305 306 6.884295 CCAACCCTCTTGATACTTAACATTGA 59.116 38.462 0.00 0.00 0.00 2.57
306 307 6.095440 CCCAACCCTCTTGATACTTAACATTG 59.905 42.308 0.00 0.00 0.00 2.82
307 308 6.011981 TCCCAACCCTCTTGATACTTAACATT 60.012 38.462 0.00 0.00 0.00 2.71
308 309 5.491078 TCCCAACCCTCTTGATACTTAACAT 59.509 40.000 0.00 0.00 0.00 2.71
309 310 4.847512 TCCCAACCCTCTTGATACTTAACA 59.152 41.667 0.00 0.00 0.00 2.41
310 311 5.431179 TCCCAACCCTCTTGATACTTAAC 57.569 43.478 0.00 0.00 0.00 2.01
311 312 6.652205 AATCCCAACCCTCTTGATACTTAA 57.348 37.500 0.00 0.00 0.00 1.85
312 313 7.758820 TTAATCCCAACCCTCTTGATACTTA 57.241 36.000 0.00 0.00 0.00 2.24
313 314 6.652205 TTAATCCCAACCCTCTTGATACTT 57.348 37.500 0.00 0.00 0.00 2.24
314 315 6.652205 TTTAATCCCAACCCTCTTGATACT 57.348 37.500 0.00 0.00 0.00 2.12
315 316 8.218488 AGTATTTAATCCCAACCCTCTTGATAC 58.782 37.037 0.00 0.00 0.00 2.24
316 317 8.344939 AGTATTTAATCCCAACCCTCTTGATA 57.655 34.615 0.00 0.00 0.00 2.15
317 318 7.129504 AGAGTATTTAATCCCAACCCTCTTGAT 59.870 37.037 0.00 0.00 0.00 2.57
318 319 6.447084 AGAGTATTTAATCCCAACCCTCTTGA 59.553 38.462 0.00 0.00 0.00 3.02
319 320 6.543831 CAGAGTATTTAATCCCAACCCTCTTG 59.456 42.308 0.00 0.00 0.00 3.02
320 321 6.353951 CCAGAGTATTTAATCCCAACCCTCTT 60.354 42.308 0.00 0.00 0.00 2.85
321 322 5.132816 CCAGAGTATTTAATCCCAACCCTCT 59.867 44.000 0.00 0.00 0.00 3.69
322 323 5.132144 TCCAGAGTATTTAATCCCAACCCTC 59.868 44.000 0.00 0.00 0.00 4.30
323 324 5.043762 TCCAGAGTATTTAATCCCAACCCT 58.956 41.667 0.00 0.00 0.00 4.34
324 325 5.382664 TCCAGAGTATTTAATCCCAACCC 57.617 43.478 0.00 0.00 0.00 4.11
325 326 7.898014 ATTTCCAGAGTATTTAATCCCAACC 57.102 36.000 0.00 0.00 0.00 3.77
328 329 9.983024 TGTTTATTTCCAGAGTATTTAATCCCA 57.017 29.630 0.00 0.00 0.00 4.37
355 356 7.776969 AGCCATTGTAGATCATCACAAAAGTAT 59.223 33.333 10.41 0.00 38.11 2.12
387 388 9.326489 ACTATAAATCTAGCCATCCTACATTGA 57.674 33.333 0.00 0.00 0.00 2.57
388 389 9.376075 CACTATAAATCTAGCCATCCTACATTG 57.624 37.037 0.00 0.00 0.00 2.82
399 405 5.925509 TGACAACCCACTATAAATCTAGCC 58.074 41.667 0.00 0.00 0.00 3.93
406 412 7.841282 TGGAATTTTGACAACCCACTATAAA 57.159 32.000 0.00 0.00 0.00 1.40
412 418 4.119136 CTGTTGGAATTTTGACAACCCAC 58.881 43.478 0.00 0.00 42.75 4.61
413 419 3.133721 CCTGTTGGAATTTTGACAACCCA 59.866 43.478 0.00 0.00 42.75 4.51
417 423 5.181748 CCAAACCTGTTGGAATTTTGACAA 58.818 37.500 0.00 0.00 42.06 3.18
424 430 5.069914 GTCCTTTACCAAACCTGTTGGAATT 59.930 40.000 11.96 0.00 42.06 2.17
427 433 3.053544 TGTCCTTTACCAAACCTGTTGGA 60.054 43.478 11.96 0.00 42.06 3.53
428 434 3.292460 TGTCCTTTACCAAACCTGTTGG 58.708 45.455 3.55 3.55 44.91 3.77
437 443 4.585581 GGTTTTAAGCCTGTCCTTTACCAA 59.414 41.667 0.00 0.00 0.00 3.67
439 445 4.146564 TGGTTTTAAGCCTGTCCTTTACC 58.853 43.478 0.00 0.00 0.00 2.85
440 446 4.321008 GCTGGTTTTAAGCCTGTCCTTTAC 60.321 45.833 6.59 0.00 34.45 2.01
449 455 0.872388 CGTTCGCTGGTTTTAAGCCT 59.128 50.000 0.00 0.00 37.37 4.58
473 479 0.903942 GCATTTGCCATTCTCCCCAA 59.096 50.000 0.00 0.00 34.31 4.12
481 487 2.147436 AAACGTTCGCATTTGCCATT 57.853 40.000 0.00 0.00 37.91 3.16
496 502 8.285776 AGAAACAGAAATTGCTATGAAAAACG 57.714 30.769 0.00 0.00 0.00 3.60
506 512 5.047519 CCATCCTCAAGAAACAGAAATTGCT 60.048 40.000 0.00 0.00 0.00 3.91
514 520 9.014297 ACTAAATTTACCATCCTCAAGAAACAG 57.986 33.333 0.00 0.00 0.00 3.16
519 525 8.325787 TGCTAACTAAATTTACCATCCTCAAGA 58.674 33.333 0.00 0.00 0.00 3.02
520 526 8.506168 TGCTAACTAAATTTACCATCCTCAAG 57.494 34.615 0.00 0.00 0.00 3.02
521 527 8.871629 TTGCTAACTAAATTTACCATCCTCAA 57.128 30.769 0.00 0.00 0.00 3.02
522 528 7.067008 GCTTGCTAACTAAATTTACCATCCTCA 59.933 37.037 0.00 0.00 0.00 3.86
534 540 7.341769 TGGATTTACCATGCTTGCTAACTAAAT 59.658 33.333 0.00 0.00 44.64 1.40
552 558 3.764885 ATTGAACTGCGCTGGATTTAC 57.235 42.857 18.98 3.96 0.00 2.01
553 559 4.782019 AAATTGAACTGCGCTGGATTTA 57.218 36.364 18.98 0.00 0.00 1.40
555 561 3.256631 AGAAAATTGAACTGCGCTGGATT 59.743 39.130 18.98 4.52 0.00 3.01
556 562 2.821969 AGAAAATTGAACTGCGCTGGAT 59.178 40.909 18.98 6.89 0.00 3.41
557 563 2.030893 CAGAAAATTGAACTGCGCTGGA 60.031 45.455 18.98 2.10 0.00 3.86
559 565 2.975851 GACAGAAAATTGAACTGCGCTG 59.024 45.455 13.23 13.23 35.38 5.18
560 566 2.618241 TGACAGAAAATTGAACTGCGCT 59.382 40.909 9.73 0.00 35.38 5.92
561 567 2.975851 CTGACAGAAAATTGAACTGCGC 59.024 45.455 0.00 0.00 35.38 6.09
562 568 3.250762 TCCTGACAGAAAATTGAACTGCG 59.749 43.478 3.32 0.00 35.38 5.18
563 569 4.836125 TCCTGACAGAAAATTGAACTGC 57.164 40.909 3.32 0.00 35.38 4.40
564 570 6.145048 GCAAATCCTGACAGAAAATTGAACTG 59.855 38.462 3.32 0.00 37.62 3.16
565 571 6.041296 AGCAAATCCTGACAGAAAATTGAACT 59.959 34.615 3.32 0.00 0.00 3.01
566 572 6.145048 CAGCAAATCCTGACAGAAAATTGAAC 59.855 38.462 3.32 0.00 34.77 3.18
567 573 6.183360 ACAGCAAATCCTGACAGAAAATTGAA 60.183 34.615 3.32 0.00 36.67 2.69
568 574 5.302568 ACAGCAAATCCTGACAGAAAATTGA 59.697 36.000 3.32 0.00 36.67 2.57
569 575 5.404366 CACAGCAAATCCTGACAGAAAATTG 59.596 40.000 3.32 5.14 36.67 2.32
570 576 5.535333 CACAGCAAATCCTGACAGAAAATT 58.465 37.500 3.32 0.00 36.67 1.82
571 577 4.560108 GCACAGCAAATCCTGACAGAAAAT 60.560 41.667 3.32 0.00 36.67 1.82
572 578 3.243501 GCACAGCAAATCCTGACAGAAAA 60.244 43.478 3.32 0.00 36.67 2.29
576 582 1.531423 AGCACAGCAAATCCTGACAG 58.469 50.000 0.00 0.00 36.67 3.51
579 585 0.599558 GCAAGCACAGCAAATCCTGA 59.400 50.000 0.00 0.00 36.67 3.86
590 596 5.911752 TGGAAATTTCTTTTAGCAAGCACA 58.088 33.333 17.42 0.09 0.00 4.57
591 597 6.091305 GGATGGAAATTTCTTTTAGCAAGCAC 59.909 38.462 17.42 0.00 0.00 4.40
608 614 6.392625 TTTAAATTGTCACACGGATGGAAA 57.607 33.333 0.00 0.00 0.00 3.13
611 617 6.630676 CAATTTAAATTGTCACACGGATGG 57.369 37.500 26.14 3.00 40.61 3.51
630 636 9.474920 ACAAATTGAATGTTTATCACGACAATT 57.525 25.926 0.00 0.00 37.64 2.32
631 637 9.128107 GACAAATTGAATGTTTATCACGACAAT 57.872 29.630 0.00 0.00 32.47 2.71
632 638 8.131731 TGACAAATTGAATGTTTATCACGACAA 58.868 29.630 0.00 0.00 0.00 3.18
633 639 7.643579 TGACAAATTGAATGTTTATCACGACA 58.356 30.769 0.00 0.00 0.00 4.35
634 640 8.673626 ATGACAAATTGAATGTTTATCACGAC 57.326 30.769 0.00 0.00 26.18 4.34
635 641 9.340695 GAATGACAAATTGAATGTTTATCACGA 57.659 29.630 0.00 0.00 26.18 4.35
636 642 9.345517 AGAATGACAAATTGAATGTTTATCACG 57.654 29.630 0.00 0.00 26.18 4.35
640 646 9.643693 GGACAGAATGACAAATTGAATGTTTAT 57.356 29.630 0.00 0.00 39.69 1.40
641 647 8.637099 TGGACAGAATGACAAATTGAATGTTTA 58.363 29.630 0.00 0.00 39.69 2.01
642 648 7.499292 TGGACAGAATGACAAATTGAATGTTT 58.501 30.769 0.00 0.00 39.69 2.83
643 649 7.053316 TGGACAGAATGACAAATTGAATGTT 57.947 32.000 0.00 0.00 39.69 2.71
644 650 6.653526 TGGACAGAATGACAAATTGAATGT 57.346 33.333 0.00 0.00 39.69 2.71
645 651 6.090358 GCTTGGACAGAATGACAAATTGAATG 59.910 38.462 0.00 0.00 39.69 2.67
646 652 6.161381 GCTTGGACAGAATGACAAATTGAAT 58.839 36.000 0.00 0.00 39.69 2.57
647 653 5.068855 TGCTTGGACAGAATGACAAATTGAA 59.931 36.000 0.00 0.00 39.69 2.69
648 654 4.583907 TGCTTGGACAGAATGACAAATTGA 59.416 37.500 0.00 0.00 39.69 2.57
649 655 4.873817 TGCTTGGACAGAATGACAAATTG 58.126 39.130 0.00 0.00 39.69 2.32
650 656 5.534207 TTGCTTGGACAGAATGACAAATT 57.466 34.783 0.00 0.00 39.69 1.82
666 672 1.369209 CCGTGCTGACGTTTGCTTG 60.369 57.895 13.40 6.92 44.54 4.01
667 673 0.531090 TACCGTGCTGACGTTTGCTT 60.531 50.000 13.40 1.10 44.54 3.91
671 677 1.873698 ATGTTACCGTGCTGACGTTT 58.126 45.000 0.00 0.00 44.54 3.60
678 684 2.450609 AACGAGAATGTTACCGTGCT 57.549 45.000 0.00 0.00 35.28 4.40
681 687 3.116079 ACCAAACGAGAATGTTACCGT 57.884 42.857 0.00 0.00 36.77 4.83
683 689 6.549061 GGATTTACCAAACGAGAATGTTACC 58.451 40.000 0.00 0.00 38.79 2.85
684 690 6.128472 ACGGATTTACCAAACGAGAATGTTAC 60.128 38.462 0.00 0.00 38.90 2.50
717 723 3.627395 AAGTTGGCCTGATTCGTCATA 57.373 42.857 3.32 0.00 0.00 2.15
729 735 1.298602 CAAAACCAGCAAAGTTGGCC 58.701 50.000 0.00 0.00 39.39 5.36
731 737 3.999663 TCAAACAAAACCAGCAAAGTTGG 59.000 39.130 0.00 0.00 41.60 3.77
732 738 5.604010 TTCAAACAAAACCAGCAAAGTTG 57.396 34.783 0.00 0.00 0.00 3.16
733 739 6.429385 TCATTTCAAACAAAACCAGCAAAGTT 59.571 30.769 0.00 0.00 0.00 2.66
769 775 0.603569 TCCCGAGTTGAGAAGCTCAC 59.396 55.000 0.00 0.00 40.46 3.51
770 776 1.338107 TTCCCGAGTTGAGAAGCTCA 58.662 50.000 0.00 0.00 38.87 4.26
795 801 8.798402 CCAACTTATATTTTGTGGGTCAGTTTA 58.202 33.333 0.00 0.00 0.00 2.01
852 859 2.486966 GAAATGAGCGCACCAGCC 59.513 61.111 11.47 0.00 37.52 4.85
858 865 2.358615 ACAGCCGAAATGAGCGCA 60.359 55.556 11.47 0.00 0.00 6.09
860 867 0.729116 ATTCACAGCCGAAATGAGCG 59.271 50.000 0.00 0.00 0.00 5.03
869 876 3.499737 GCCGTCCATTCACAGCCG 61.500 66.667 0.00 0.00 0.00 5.52
875 882 0.107214 GAATCCAGGCCGTCCATTCA 60.107 55.000 12.33 0.00 33.74 2.57
878 885 1.224592 GTGAATCCAGGCCGTCCAT 59.775 57.895 0.00 0.00 33.74 3.41
881 888 4.522971 GAGTGAATCCAGGCCGTC 57.477 61.111 0.00 0.00 0.00 4.79
951 961 4.208686 CCCTACCGAGACGCTGCC 62.209 72.222 0.00 0.00 0.00 4.85
1010 1030 3.450115 GGAGTAGCGACCTGGCGT 61.450 66.667 11.14 2.96 38.18 5.68
1034 1054 2.506438 CGCGGAGAACGGAGGAAC 60.506 66.667 0.00 0.00 44.51 3.62
1035 1055 4.430765 GCGCGGAGAACGGAGGAA 62.431 66.667 8.83 0.00 44.51 3.36
1100 1120 2.669569 CAGACAACAGGCGGTGGG 60.670 66.667 0.00 0.00 0.00 4.61
1108 1128 4.335647 AGGGGGCGCAGACAACAG 62.336 66.667 10.83 0.00 37.00 3.16
1109 1129 4.329545 GAGGGGGCGCAGACAACA 62.330 66.667 10.83 0.00 37.00 3.33
1131 1151 4.338012 TGAATCTTGGTACGTACCTGAGA 58.662 43.478 37.37 35.14 46.58 3.27
1209 1229 7.684062 CAACCTTGCAAGCACATATAATAAC 57.316 36.000 21.43 0.00 0.00 1.89
1244 1264 1.372683 GACTCCAGGCAGAAGCACA 59.627 57.895 0.00 0.00 44.61 4.57
1246 1266 2.659016 CGACTCCAGGCAGAAGCA 59.341 61.111 0.00 0.00 44.61 3.91
1296 1316 1.436600 CGAGCATTGACTTGAGCAGT 58.563 50.000 0.00 0.00 39.07 4.40
1298 1318 1.300971 GGCGAGCATTGACTTGAGCA 61.301 55.000 0.00 0.00 0.00 4.26
1348 1368 6.073058 TGTCTGCAGTGTCAATTATCTTCAAC 60.073 38.462 14.67 0.00 0.00 3.18
1366 1386 7.509141 TTGAACAAGAGATAAATTGTCTGCA 57.491 32.000 0.00 0.00 38.66 4.41
1413 1433 8.175069 CGTAATCAATAAGCACAAAGTGTACAT 58.825 33.333 0.00 0.00 35.75 2.29
1428 1450 7.108841 AGTGCTTCCTCTACGTAATCAATAA 57.891 36.000 0.00 0.00 0.00 1.40
1438 1460 2.288825 TGGTTGAAGTGCTTCCTCTACG 60.289 50.000 9.18 0.00 38.77 3.51
1490 1512 7.778470 TCCATTTGTATGTTTTGAACCAAAC 57.222 32.000 0.00 0.00 32.79 2.93
1525 1566 6.658188 ATCGGTTATTCCTTTGAACCAAAA 57.342 33.333 4.09 0.00 42.36 2.44
1562 1647 4.902448 GGTATTAAGACCACTCCCTGAGAT 59.098 45.833 14.45 0.00 39.51 2.75
1675 1760 5.400189 CCCCATGAATAGGAACAAACCCTAT 60.400 44.000 0.00 0.00 46.11 2.57
1678 1763 3.031013 CCCCATGAATAGGAACAAACCC 58.969 50.000 0.00 0.00 0.00 4.11
1685 1770 2.047061 CGGAGTCCCCATGAATAGGAA 58.953 52.381 2.80 0.00 34.14 3.36
1695 1780 2.332117 GGGATATTTACGGAGTCCCCA 58.668 52.381 2.80 0.00 43.93 4.96
1701 1786 9.463443 GATTTTTGAAATGGGATATTTACGGAG 57.537 33.333 0.00 0.00 0.00 4.63
1728 1813 3.678915 TTTCCCTCGAAACGTTGTTTC 57.321 42.857 0.00 11.42 32.96 2.78
1735 1820 3.998341 TCCTATGTTTTTCCCTCGAAACG 59.002 43.478 0.00 0.00 37.72 3.60
1741 1826 8.575649 TTGTAGAATTCCTATGTTTTTCCCTC 57.424 34.615 0.65 0.00 0.00 4.30
1743 1828 9.803315 GAATTGTAGAATTCCTATGTTTTTCCC 57.197 33.333 13.11 0.00 41.14 3.97
1768 1853 8.966868 AGAAATTTAAGAAAGTGGTTCAAGTGA 58.033 29.630 0.00 0.00 38.86 3.41
1800 1885 2.282462 AACAAAGGGGCTGCGAGG 60.282 61.111 0.00 0.00 0.00 4.63
1911 2000 2.419851 CCAGGAGAGAAGGCAAAGCTAG 60.420 54.545 0.00 0.00 0.00 3.42
2020 2115 2.428925 GCATGGTGGCTGGGGAATG 61.429 63.158 0.00 0.00 0.00 2.67
2055 2150 9.174166 AGGATCATGTATTTAGTGTTTGGTTAC 57.826 33.333 0.00 0.00 0.00 2.50
2070 2165 7.529534 AGGAGAGAGAGATAGGATCATGTAT 57.470 40.000 0.00 0.00 0.00 2.29
2114 2314 4.002982 TGTTAGCATGTTGGCTAGTCTTG 58.997 43.478 0.00 0.00 46.25 3.02
2131 2331 3.431912 TGCTAGTTTCATGCGTGTGTTAG 59.568 43.478 5.68 5.66 0.00 2.34
2132 2332 3.185594 GTGCTAGTTTCATGCGTGTGTTA 59.814 43.478 5.68 0.00 0.00 2.41
2133 2333 2.032030 GTGCTAGTTTCATGCGTGTGTT 60.032 45.455 5.68 0.00 0.00 3.32
2134 2334 1.531149 GTGCTAGTTTCATGCGTGTGT 59.469 47.619 5.68 0.00 0.00 3.72
2135 2335 1.530720 TGTGCTAGTTTCATGCGTGTG 59.469 47.619 5.68 0.00 0.00 3.82
2136 2336 1.531149 GTGTGCTAGTTTCATGCGTGT 59.469 47.619 5.68 0.00 0.00 4.49
2137 2337 1.135972 GGTGTGCTAGTTTCATGCGTG 60.136 52.381 0.00 0.00 0.00 5.34
2138 2338 1.156736 GGTGTGCTAGTTTCATGCGT 58.843 50.000 0.00 0.00 0.00 5.24
2139 2339 1.155889 TGGTGTGCTAGTTTCATGCG 58.844 50.000 0.00 0.00 0.00 4.73
2140 2340 3.855689 ATTGGTGTGCTAGTTTCATGC 57.144 42.857 0.00 0.00 0.00 4.06
2141 2341 5.633830 AGAATTGGTGTGCTAGTTTCATG 57.366 39.130 0.00 0.00 0.00 3.07
2142 2342 6.568462 CGAAAGAATTGGTGTGCTAGTTTCAT 60.568 38.462 0.00 0.00 0.00 2.57
2143 2343 5.277779 CGAAAGAATTGGTGTGCTAGTTTCA 60.278 40.000 0.00 0.00 0.00 2.69
2144 2344 5.147162 CGAAAGAATTGGTGTGCTAGTTTC 58.853 41.667 0.00 0.00 0.00 2.78
2145 2345 4.023193 CCGAAAGAATTGGTGTGCTAGTTT 60.023 41.667 0.00 0.00 0.00 2.66
2146 2346 3.502211 CCGAAAGAATTGGTGTGCTAGTT 59.498 43.478 0.00 0.00 0.00 2.24
2147 2347 3.074412 CCGAAAGAATTGGTGTGCTAGT 58.926 45.455 0.00 0.00 0.00 2.57
2148 2348 2.159517 GCCGAAAGAATTGGTGTGCTAG 60.160 50.000 0.00 0.00 0.00 3.42
2149 2349 1.810151 GCCGAAAGAATTGGTGTGCTA 59.190 47.619 0.00 0.00 0.00 3.49
2150 2350 0.598065 GCCGAAAGAATTGGTGTGCT 59.402 50.000 0.00 0.00 0.00 4.40
2151 2351 0.388520 GGCCGAAAGAATTGGTGTGC 60.389 55.000 0.00 0.00 0.00 4.57
2152 2352 0.958091 TGGCCGAAAGAATTGGTGTG 59.042 50.000 0.00 0.00 0.00 3.82
2153 2353 1.339929 GTTGGCCGAAAGAATTGGTGT 59.660 47.619 0.00 0.00 0.00 4.16
2154 2354 1.339610 TGTTGGCCGAAAGAATTGGTG 59.660 47.619 0.00 0.00 0.00 4.17
2155 2355 1.339929 GTGTTGGCCGAAAGAATTGGT 59.660 47.619 0.00 0.00 0.00 3.67
2156 2356 1.613437 AGTGTTGGCCGAAAGAATTGG 59.387 47.619 0.00 0.00 0.00 3.16
2157 2357 3.004734 AGAAGTGTTGGCCGAAAGAATTG 59.995 43.478 0.00 0.00 0.00 2.32
2158 2358 3.222603 AGAAGTGTTGGCCGAAAGAATT 58.777 40.909 0.00 0.00 0.00 2.17
2164 2364 1.876416 GCTGTAGAAGTGTTGGCCGAA 60.876 52.381 0.00 0.00 0.00 4.30
2169 2369 2.440539 ACGAGCTGTAGAAGTGTTGG 57.559 50.000 0.00 0.00 0.00 3.77
2193 2393 2.857186 TATCAGTGCAGGTGCTCAAA 57.143 45.000 3.18 0.00 42.66 2.69
2311 2511 8.903820 GCCTGTTTTATTCCTTACATGATAAGT 58.096 33.333 0.00 0.00 0.00 2.24
2312 2512 8.352942 GGCCTGTTTTATTCCTTACATGATAAG 58.647 37.037 0.00 4.00 0.00 1.73
2313 2513 8.058847 AGGCCTGTTTTATTCCTTACATGATAA 58.941 33.333 3.11 0.00 0.00 1.75
2314 2514 7.502226 CAGGCCTGTTTTATTCCTTACATGATA 59.498 37.037 25.53 0.00 0.00 2.15
2315 2515 6.322201 CAGGCCTGTTTTATTCCTTACATGAT 59.678 38.462 25.53 0.00 0.00 2.45
2316 2516 5.652014 CAGGCCTGTTTTATTCCTTACATGA 59.348 40.000 25.53 0.00 0.00 3.07
2317 2517 5.652014 TCAGGCCTGTTTTATTCCTTACATG 59.348 40.000 31.58 0.76 0.00 3.21
2318 2518 5.826643 TCAGGCCTGTTTTATTCCTTACAT 58.173 37.500 31.58 0.00 0.00 2.29
2319 2519 5.249780 TCAGGCCTGTTTTATTCCTTACA 57.750 39.130 31.58 4.68 0.00 2.41
2320 2520 5.393135 GCTTCAGGCCTGTTTTATTCCTTAC 60.393 44.000 31.58 5.02 34.27 2.34
2321 2521 4.705023 GCTTCAGGCCTGTTTTATTCCTTA 59.295 41.667 31.58 5.39 34.27 2.69
2322 2522 3.511540 GCTTCAGGCCTGTTTTATTCCTT 59.488 43.478 31.58 0.00 34.27 3.36
2323 2523 3.092301 GCTTCAGGCCTGTTTTATTCCT 58.908 45.455 31.58 0.00 34.27 3.36
2324 2524 3.092301 AGCTTCAGGCCTGTTTTATTCC 58.908 45.455 31.58 12.48 43.05 3.01
2325 2525 4.021981 ACAAGCTTCAGGCCTGTTTTATTC 60.022 41.667 31.58 14.51 42.30 1.75
2326 2526 3.897505 ACAAGCTTCAGGCCTGTTTTATT 59.102 39.130 31.58 17.71 42.30 1.40
2327 2527 3.500343 ACAAGCTTCAGGCCTGTTTTAT 58.500 40.909 31.58 14.18 42.30 1.40
2328 2528 2.944129 ACAAGCTTCAGGCCTGTTTTA 58.056 42.857 31.58 10.48 42.30 1.52
2329 2529 1.780503 ACAAGCTTCAGGCCTGTTTT 58.219 45.000 31.58 17.96 42.30 2.43
2330 2530 3.520623 ACAAGCTTCAGGCCTGTTT 57.479 47.368 31.58 18.29 42.30 2.83
2331 2531 3.520623 AACAAGCTTCAGGCCTGTT 57.479 47.368 31.58 16.32 46.88 3.16
2332 2532 0.825010 CCAACAAGCTTCAGGCCTGT 60.825 55.000 31.58 10.48 46.35 4.00
2333 2533 0.538057 TCCAACAAGCTTCAGGCCTG 60.538 55.000 27.87 27.87 43.05 4.85
2334 2534 0.407139 ATCCAACAAGCTTCAGGCCT 59.593 50.000 0.00 0.00 43.05 5.19
2335 2535 0.813821 GATCCAACAAGCTTCAGGCC 59.186 55.000 0.00 0.00 43.05 5.19
2336 2536 1.200948 GTGATCCAACAAGCTTCAGGC 59.799 52.381 0.00 0.00 42.19 4.85
2337 2537 2.486982 CTGTGATCCAACAAGCTTCAGG 59.513 50.000 0.00 0.00 0.00 3.86
2338 2538 2.486982 CCTGTGATCCAACAAGCTTCAG 59.513 50.000 0.00 0.00 0.00 3.02
2339 2539 2.507484 CCTGTGATCCAACAAGCTTCA 58.493 47.619 0.00 0.00 0.00 3.02
2340 2540 1.200948 GCCTGTGATCCAACAAGCTTC 59.799 52.381 0.00 0.00 35.14 3.86
2341 2541 1.251251 GCCTGTGATCCAACAAGCTT 58.749 50.000 0.00 0.00 35.14 3.74
2342 2542 0.610232 GGCCTGTGATCCAACAAGCT 60.610 55.000 0.00 0.00 37.60 3.74
2343 2543 1.885871 GGCCTGTGATCCAACAAGC 59.114 57.895 0.00 0.00 36.88 4.01
2344 2544 2.174334 CGGCCTGTGATCCAACAAG 58.826 57.895 0.00 0.00 0.00 3.16
2345 2545 4.395519 CGGCCTGTGATCCAACAA 57.604 55.556 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.