Multiple sequence alignment - TraesCS6A01G005600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G005600 chr6A 100.000 2654 0 0 2315 4968 2179425 2176772 0.000000e+00 4902.0
1 TraesCS6A01G005600 chr6A 100.000 1958 0 0 1 1958 2181739 2179782 0.000000e+00 3616.0
2 TraesCS6A01G005600 chr6B 89.698 2184 178 24 2422 4572 6629834 6627665 0.000000e+00 2743.0
3 TraesCS6A01G005600 chr6B 86.980 1129 78 12 406 1499 6631170 6630076 0.000000e+00 1206.0
4 TraesCS6A01G005600 chr6B 87.566 378 45 2 4591 4968 6627305 6626930 2.120000e-118 436.0
5 TraesCS6A01G005600 chr6B 87.368 190 12 3 1567 1744 6630027 6629838 1.810000e-49 207.0
6 TraesCS6A01G005600 chr6D 92.242 1869 128 12 2422 4282 3346409 3344550 0.000000e+00 2632.0
7 TraesCS6A01G005600 chr6D 84.148 1760 194 35 3254 4968 3352529 3350810 0.000000e+00 1626.0
8 TraesCS6A01G005600 chr6D 94.467 741 40 1 844 1583 3347409 3346669 0.000000e+00 1140.0
9 TraesCS6A01G005600 chr6D 87.918 389 43 2 4580 4968 3344518 3344134 5.860000e-124 455.0
10 TraesCS6A01G005600 chr6D 91.791 268 15 3 287 547 3347924 3347657 2.830000e-97 366.0
11 TraesCS6A01G005600 chr6D 93.678 174 11 0 1785 1958 86728344 86728517 1.370000e-65 261.0
12 TraesCS6A01G005600 chr6D 93.182 176 12 0 580 755 3347658 3347483 4.930000e-65 259.0
13 TraesCS6A01G005600 chr6D 89.831 177 6 3 1580 1744 3346589 3346413 3.010000e-52 217.0
14 TraesCS6A01G005600 chr7B 87.145 739 93 2 3003 3740 454182510 454183247 0.000000e+00 837.0
15 TraesCS6A01G005600 chr7B 83.633 611 57 17 928 1499 454181460 454182066 7.320000e-148 534.0
16 TraesCS6A01G005600 chr3B 88.791 678 74 2 3043 3719 829392298 829392974 0.000000e+00 830.0
17 TraesCS6A01G005600 chr3B 80.182 661 90 22 844 1468 829391522 829392177 1.630000e-124 457.0
18 TraesCS6A01G005600 chr3B 86.188 181 20 4 2422 2600 611153336 611153513 1.830000e-44 191.0
19 TraesCS6A01G005600 chr3B 89.815 108 10 1 2315 2421 144177894 144177787 2.410000e-28 137.0
20 TraesCS6A01G005600 chr7A 86.810 743 89 7 3003 3738 487480371 487481111 0.000000e+00 821.0
21 TraesCS6A01G005600 chr7A 84.603 604 65 18 928 1504 487479087 487479689 4.310000e-160 575.0
22 TraesCS6A01G005600 chr3D 87.840 699 80 3 3043 3737 611673987 611674684 0.000000e+00 815.0
23 TraesCS6A01G005600 chr3D 80.000 660 89 21 844 1468 611673194 611673845 9.810000e-122 448.0
24 TraesCS6A01G005600 chr3D 82.353 238 27 12 2643 2876 497823196 497823422 5.080000e-45 193.0
25 TraesCS6A01G005600 chr7D 86.649 734 95 3 3007 3738 437203669 437204401 0.000000e+00 809.0
26 TraesCS6A01G005600 chr7D 83.279 610 68 20 928 1504 437202610 437203218 9.470000e-147 531.0
27 TraesCS6A01G005600 chr7D 74.747 693 149 23 3042 3718 629450447 629449765 2.260000e-73 287.0
28 TraesCS6A01G005600 chr7D 93.182 176 12 0 1783 1958 433896375 433896550 4.930000e-65 259.0
29 TraesCS6A01G005600 chr7D 92.308 182 12 2 1778 1958 623796099 623796279 1.770000e-64 257.0
30 TraesCS6A01G005600 chr7D 83.117 77 6 3 3909 3978 437204591 437204667 4.150000e-06 63.9
31 TraesCS6A01G005600 chr3A 87.213 696 84 3 3043 3734 746462860 746463554 0.000000e+00 787.0
32 TraesCS6A01G005600 chr3A 80.182 661 92 24 844 1468 746462083 746462740 4.530000e-125 459.0
33 TraesCS6A01G005600 chr2D 76.232 690 143 16 3044 3718 636372987 636373670 3.680000e-91 346.0
34 TraesCS6A01G005600 chr2D 81.172 239 42 3 2648 2883 571230115 571229877 6.570000e-44 189.0
35 TraesCS6A01G005600 chrUn 93.714 175 10 1 1784 1958 175473801 175473974 1.370000e-65 261.0
36 TraesCS6A01G005600 chr5D 93.714 175 10 1 1784 1958 149772392 149772565 1.370000e-65 261.0
37 TraesCS6A01G005600 chr5D 94.152 171 10 0 1788 1958 446576043 446575873 1.370000e-65 261.0
38 TraesCS6A01G005600 chr5D 92.697 178 12 1 1781 1958 421386159 421386335 6.380000e-64 255.0
39 TraesCS6A01G005600 chr5D 77.835 388 78 6 1070 1453 524249470 524249853 2.990000e-57 233.0
40 TraesCS6A01G005600 chr5A 93.143 175 11 1 1784 1958 313814608 313814435 6.380000e-64 255.0
41 TraesCS6A01G005600 chr5A 85.153 229 24 6 2650 2875 692767817 692767596 5.000000e-55 226.0
42 TraesCS6A01G005600 chr5A 80.784 255 36 3 2635 2876 3365502 3365248 2.360000e-43 187.0
43 TraesCS6A01G005600 chr5A 84.694 98 12 2 2503 2600 475613941 475614035 1.470000e-15 95.3
44 TraesCS6A01G005600 chr1D 93.567 171 11 0 1788 1958 473696506 473696336 6.380000e-64 255.0
45 TraesCS6A01G005600 chr4B 83.966 237 32 4 2649 2879 396716266 396716030 6.470000e-54 222.0
46 TraesCS6A01G005600 chr4D 83.613 238 32 3 2649 2879 319269848 319269611 3.010000e-52 217.0
47 TraesCS6A01G005600 chr4A 81.818 231 38 3 2650 2876 121480428 121480198 1.830000e-44 191.0
48 TraesCS6A01G005600 chr4A 84.916 179 20 4 2428 2599 522959009 522959187 1.840000e-39 174.0
49 TraesCS6A01G005600 chr4A 80.749 187 24 5 2426 2600 646311807 646311993 8.670000e-28 135.0
50 TraesCS6A01G005600 chr2A 81.111 180 28 3 2422 2600 761850140 761850314 6.710000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G005600 chr6A 2176772 2181739 4967 True 4259.000000 4902 100.000000 1 4968 2 chr6A.!!$R1 4967
1 TraesCS6A01G005600 chr6B 6626930 6631170 4240 True 1148.000000 2743 87.903000 406 4968 4 chr6B.!!$R1 4562
2 TraesCS6A01G005600 chr6D 3344134 3352529 8395 True 956.428571 2632 90.511286 287 4968 7 chr6D.!!$R1 4681
3 TraesCS6A01G005600 chr7B 454181460 454183247 1787 False 685.500000 837 85.389000 928 3740 2 chr7B.!!$F1 2812
4 TraesCS6A01G005600 chr3B 829391522 829392974 1452 False 643.500000 830 84.486500 844 3719 2 chr3B.!!$F2 2875
5 TraesCS6A01G005600 chr7A 487479087 487481111 2024 False 698.000000 821 85.706500 928 3738 2 chr7A.!!$F1 2810
6 TraesCS6A01G005600 chr3D 611673194 611674684 1490 False 631.500000 815 83.920000 844 3737 2 chr3D.!!$F2 2893
7 TraesCS6A01G005600 chr7D 437202610 437204667 2057 False 467.966667 809 84.348333 928 3978 3 chr7D.!!$F3 3050
8 TraesCS6A01G005600 chr7D 629449765 629450447 682 True 287.000000 287 74.747000 3042 3718 1 chr7D.!!$R1 676
9 TraesCS6A01G005600 chr3A 746462083 746463554 1471 False 623.000000 787 83.697500 844 3734 2 chr3A.!!$F1 2890
10 TraesCS6A01G005600 chr2D 636372987 636373670 683 False 346.000000 346 76.232000 3044 3718 1 chr2D.!!$F1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.036732 TTGCGCTGGAAACATCCTCT 59.963 50.0 9.73 0.0 41.51 3.69 F
336 4662 0.036765 TGTACTGCATCCGTCCCAAC 60.037 55.0 0.00 0.0 0.00 3.77 F
1014 5399 0.162507 CGCTCAGTCGCTCACAAAAG 59.837 55.0 0.00 0.0 0.00 2.27 F
1793 6716 0.107214 ACATGCAGATTACGGGGGTG 60.107 55.0 0.00 0.0 0.00 4.61 F
2394 7317 0.033796 TCACTCCGTAATCTCCCCGT 60.034 55.0 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 6697 0.107214 CACCCCCGTAATCTGCATGT 60.107 55.0 0.0 0.00 0.00 3.21 R
1789 6712 0.114364 ATCCCTGGAACCAAACACCC 59.886 55.0 0.0 0.00 0.00 4.61 R
2375 7298 0.033796 ACGGGGAGATTACGGAGTGA 60.034 55.0 0.0 0.00 45.73 3.41 R
3432 8387 0.035317 AATGCTCGTTGCTCCAGTCA 59.965 50.0 5.0 0.00 43.37 3.41 R
4295 9301 0.238289 CCACTACCGTTGCAAAGCAG 59.762 55.0 0.0 5.71 40.61 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.844451 GCCACTTGCGCTGGAAACA 61.844 57.895 17.65 0.00 39.59 2.83
23 24 1.959085 CCACTTGCGCTGGAAACAT 59.041 52.632 9.73 0.00 41.51 2.71
24 25 0.109597 CCACTTGCGCTGGAAACATC 60.110 55.000 9.73 0.00 41.51 3.06
25 26 0.109597 CACTTGCGCTGGAAACATCC 60.110 55.000 9.73 0.00 41.51 3.51
26 27 0.250901 ACTTGCGCTGGAAACATCCT 60.251 50.000 9.73 0.00 41.51 3.24
27 28 0.449388 CTTGCGCTGGAAACATCCTC 59.551 55.000 9.73 0.00 41.51 3.71
28 29 0.036732 TTGCGCTGGAAACATCCTCT 59.963 50.000 9.73 0.00 41.51 3.69
29 30 0.036732 TGCGCTGGAAACATCCTCTT 59.963 50.000 9.73 0.00 41.51 2.85
30 31 0.729690 GCGCTGGAAACATCCTCTTC 59.270 55.000 0.00 0.00 41.51 2.87
31 32 1.945819 GCGCTGGAAACATCCTCTTCA 60.946 52.381 0.00 0.00 41.51 3.02
32 33 2.636830 CGCTGGAAACATCCTCTTCAT 58.363 47.619 0.00 0.00 41.51 2.57
33 34 2.353889 CGCTGGAAACATCCTCTTCATG 59.646 50.000 0.00 0.00 41.51 3.07
34 35 3.350833 GCTGGAAACATCCTCTTCATGT 58.649 45.455 0.00 0.00 41.51 3.21
35 36 4.517285 GCTGGAAACATCCTCTTCATGTA 58.483 43.478 0.00 0.00 41.51 2.29
36 37 4.333926 GCTGGAAACATCCTCTTCATGTAC 59.666 45.833 0.00 0.00 41.51 2.90
38 39 5.491070 TGGAAACATCCTCTTCATGTACAG 58.509 41.667 0.33 0.00 33.12 2.74
39 40 4.878397 GGAAACATCCTCTTCATGTACAGG 59.122 45.833 0.00 0.00 33.12 4.00
40 41 5.338381 GGAAACATCCTCTTCATGTACAGGA 60.338 44.000 6.03 6.03 39.42 3.86
41 42 5.762179 AACATCCTCTTCATGTACAGGAA 57.238 39.130 20.70 20.70 38.56 3.36
42 43 5.965033 ACATCCTCTTCATGTACAGGAAT 57.035 39.130 22.01 5.51 38.56 3.01
43 44 7.437713 AACATCCTCTTCATGTACAGGAATA 57.562 36.000 22.01 14.63 38.56 1.75
44 45 7.437713 ACATCCTCTTCATGTACAGGAATAA 57.562 36.000 22.01 12.93 38.56 1.40
45 46 8.038862 ACATCCTCTTCATGTACAGGAATAAT 57.961 34.615 22.01 10.98 38.56 1.28
49 50 8.206867 TCCTCTTCATGTACAGGAATAATTCAG 58.793 37.037 22.01 9.70 31.78 3.02
50 51 7.041508 CCTCTTCATGTACAGGAATAATTCAGC 60.042 40.741 22.01 0.00 30.28 4.26
53 54 6.057533 TCATGTACAGGAATAATTCAGCAGG 58.942 40.000 7.95 0.00 0.00 4.85
54 55 5.435686 TGTACAGGAATAATTCAGCAGGT 57.564 39.130 0.00 0.00 0.00 4.00
55 56 5.185454 TGTACAGGAATAATTCAGCAGGTG 58.815 41.667 0.00 0.00 0.00 4.00
56 57 4.307032 ACAGGAATAATTCAGCAGGTGT 57.693 40.909 0.00 0.00 0.00 4.16
61 62 5.882557 AGGAATAATTCAGCAGGTGTAACTG 59.117 40.000 0.00 0.00 41.41 3.16
63 64 6.821665 GGAATAATTCAGCAGGTGTAACTGTA 59.178 38.462 0.00 0.00 40.59 2.74
65 66 7.849804 ATAATTCAGCAGGTGTAACTGTAAG 57.150 36.000 0.00 0.00 40.59 2.34
66 67 3.678056 TCAGCAGGTGTAACTGTAAGG 57.322 47.619 0.00 0.00 40.59 2.69
67 68 2.076863 CAGCAGGTGTAACTGTAAGGC 58.923 52.381 0.00 0.00 40.59 4.35
69 70 2.076863 GCAGGTGTAACTGTAAGGCTG 58.923 52.381 0.00 0.00 40.59 4.85
70 71 2.550208 GCAGGTGTAACTGTAAGGCTGT 60.550 50.000 0.00 0.00 40.59 4.40
71 72 3.067106 CAGGTGTAACTGTAAGGCTGTG 58.933 50.000 0.00 0.00 39.30 3.66
72 73 2.704065 AGGTGTAACTGTAAGGCTGTGT 59.296 45.455 0.00 0.00 39.30 3.72
73 74 2.806244 GGTGTAACTGTAAGGCTGTGTG 59.194 50.000 0.00 0.00 39.30 3.82
75 76 2.104111 TGTAACTGTAAGGCTGTGTGCT 59.896 45.455 0.00 0.00 42.39 4.40
76 77 3.322541 TGTAACTGTAAGGCTGTGTGCTA 59.677 43.478 0.00 0.00 42.39 3.49
77 78 3.703001 AACTGTAAGGCTGTGTGCTAT 57.297 42.857 0.00 0.00 42.39 2.97
80 81 6.479972 AACTGTAAGGCTGTGTGCTATATA 57.520 37.500 0.00 0.00 42.39 0.86
81 82 6.090483 ACTGTAAGGCTGTGTGCTATATAG 57.910 41.667 5.30 5.30 42.39 1.31
83 84 7.646583 ACTGTAAGGCTGTGTGCTATATAGCT 61.647 42.308 29.89 12.93 44.40 3.32
84 85 9.044290 ACTGTAAGGCTGTGTGCTATATAGCTT 62.044 40.741 29.89 17.83 44.40 3.74
107 108 6.861065 TGCAAAGAACTCGAATTAACTCTT 57.139 33.333 0.00 0.00 0.00 2.85
108 109 7.259290 TGCAAAGAACTCGAATTAACTCTTT 57.741 32.000 0.00 0.00 34.34 2.52
109 110 7.132213 TGCAAAGAACTCGAATTAACTCTTTG 58.868 34.615 12.22 12.22 46.40 2.77
110 111 7.132863 GCAAAGAACTCGAATTAACTCTTTGT 58.867 34.615 15.95 0.00 45.84 2.83
111 112 7.644157 GCAAAGAACTCGAATTAACTCTTTGTT 59.356 33.333 15.95 0.53 45.84 2.83
112 113 8.947940 CAAAGAACTCGAATTAACTCTTTGTTG 58.052 33.333 9.50 0.00 42.14 3.33
113 114 7.787725 AGAACTCGAATTAACTCTTTGTTGT 57.212 32.000 0.00 0.00 39.55 3.32
114 115 8.209917 AGAACTCGAATTAACTCTTTGTTGTT 57.790 30.769 0.00 0.00 39.55 2.83
117 118 8.836959 ACTCGAATTAACTCTTTGTTGTTTTC 57.163 30.769 0.00 0.00 39.55 2.29
118 119 8.674607 ACTCGAATTAACTCTTTGTTGTTTTCT 58.325 29.630 0.00 0.00 39.55 2.52
127 128 7.651808 ACTCTTTGTTGTTTTCTATGTGATGG 58.348 34.615 0.00 0.00 0.00 3.51
128 129 6.446318 TCTTTGTTGTTTTCTATGTGATGGC 58.554 36.000 0.00 0.00 0.00 4.40
130 131 7.446931 TCTTTGTTGTTTTCTATGTGATGGCTA 59.553 33.333 0.00 0.00 0.00 3.93
131 132 6.741992 TGTTGTTTTCTATGTGATGGCTAG 57.258 37.500 0.00 0.00 0.00 3.42
132 133 6.472016 TGTTGTTTTCTATGTGATGGCTAGA 58.528 36.000 0.00 0.00 0.00 2.43
133 134 7.112122 TGTTGTTTTCTATGTGATGGCTAGAT 58.888 34.615 0.00 0.00 0.00 1.98
135 136 9.277783 GTTGTTTTCTATGTGATGGCTAGATAT 57.722 33.333 0.00 0.00 0.00 1.63
136 137 8.837788 TGTTTTCTATGTGATGGCTAGATATG 57.162 34.615 0.00 0.00 0.00 1.78
137 138 7.388776 TGTTTTCTATGTGATGGCTAGATATGC 59.611 37.037 0.00 0.00 0.00 3.14
146 147 1.622811 GGCTAGATATGCCTGTGAGCT 59.377 52.381 0.00 0.00 46.38 4.09
147 148 2.828520 GGCTAGATATGCCTGTGAGCTA 59.171 50.000 0.00 0.00 46.38 3.32
148 149 3.450457 GGCTAGATATGCCTGTGAGCTAT 59.550 47.826 0.00 0.00 46.38 2.97
149 150 4.646945 GGCTAGATATGCCTGTGAGCTATA 59.353 45.833 0.00 0.00 46.38 1.31
150 151 5.304101 GGCTAGATATGCCTGTGAGCTATAT 59.696 44.000 0.00 0.00 46.38 0.86
151 152 6.183360 GGCTAGATATGCCTGTGAGCTATATT 60.183 42.308 0.00 0.00 46.38 1.28
152 153 7.014711 GGCTAGATATGCCTGTGAGCTATATTA 59.985 40.741 0.00 0.00 46.38 0.98
153 154 8.584157 GCTAGATATGCCTGTGAGCTATATTAT 58.416 37.037 0.00 0.00 0.00 1.28
154 155 9.911138 CTAGATATGCCTGTGAGCTATATTATG 57.089 37.037 0.00 0.00 0.00 1.90
155 156 8.316497 AGATATGCCTGTGAGCTATATTATGT 57.684 34.615 0.00 0.00 0.00 2.29
159 160 8.728337 ATGCCTGTGAGCTATATTATGTATTG 57.272 34.615 0.00 0.00 0.00 1.90
161 162 8.156820 TGCCTGTGAGCTATATTATGTATTGTT 58.843 33.333 0.00 0.00 0.00 2.83
179 180 9.976255 TGTATTGTTAATGAACGCTTAATGTAC 57.024 29.630 0.00 0.00 38.51 2.90
182 183 7.661127 TGTTAATGAACGCTTAATGTACTGT 57.339 32.000 0.00 0.00 38.51 3.55
184 185 8.225107 TGTTAATGAACGCTTAATGTACTGTTC 58.775 33.333 0.00 0.00 38.51 3.18
185 186 6.795098 AATGAACGCTTAATGTACTGTTCA 57.205 33.333 7.89 7.89 46.50 3.18
186 187 6.985188 ATGAACGCTTAATGTACTGTTCAT 57.015 33.333 11.41 11.41 46.25 2.57
188 189 5.121611 TGAACGCTTAATGTACTGTTCATGG 59.878 40.000 0.47 0.00 40.31 3.66
189 190 4.575885 ACGCTTAATGTACTGTTCATGGT 58.424 39.130 0.47 0.00 0.00 3.55
190 191 5.001232 ACGCTTAATGTACTGTTCATGGTT 58.999 37.500 0.47 0.00 0.00 3.67
191 192 5.106712 ACGCTTAATGTACTGTTCATGGTTG 60.107 40.000 0.47 0.00 0.00 3.77
192 193 5.095490 GCTTAATGTACTGTTCATGGTTGC 58.905 41.667 0.47 1.24 0.00 4.17
193 194 5.106157 GCTTAATGTACTGTTCATGGTTGCT 60.106 40.000 0.47 0.00 0.00 3.91
194 195 6.570378 GCTTAATGTACTGTTCATGGTTGCTT 60.570 38.462 0.47 0.00 0.00 3.91
195 196 5.789643 AATGTACTGTTCATGGTTGCTTT 57.210 34.783 0.47 0.00 0.00 3.51
196 197 5.789643 ATGTACTGTTCATGGTTGCTTTT 57.210 34.783 0.00 0.00 0.00 2.27
199 200 5.359576 TGTACTGTTCATGGTTGCTTTTCTT 59.640 36.000 0.00 0.00 0.00 2.52
200 201 4.685924 ACTGTTCATGGTTGCTTTTCTTG 58.314 39.130 0.00 0.00 0.00 3.02
201 202 4.160252 ACTGTTCATGGTTGCTTTTCTTGT 59.840 37.500 0.00 0.00 0.00 3.16
202 203 5.359576 ACTGTTCATGGTTGCTTTTCTTGTA 59.640 36.000 0.00 0.00 0.00 2.41
203 204 6.040842 ACTGTTCATGGTTGCTTTTCTTGTAT 59.959 34.615 0.00 0.00 0.00 2.29
204 205 6.815089 TGTTCATGGTTGCTTTTCTTGTATT 58.185 32.000 0.00 0.00 0.00 1.89
206 207 6.899393 TCATGGTTGCTTTTCTTGTATTCT 57.101 33.333 0.00 0.00 0.00 2.40
207 208 6.680810 TCATGGTTGCTTTTCTTGTATTCTG 58.319 36.000 0.00 0.00 0.00 3.02
208 209 4.870363 TGGTTGCTTTTCTTGTATTCTGC 58.130 39.130 0.00 0.00 0.00 4.26
209 210 4.584325 TGGTTGCTTTTCTTGTATTCTGCT 59.416 37.500 0.00 0.00 0.00 4.24
210 211 5.767665 TGGTTGCTTTTCTTGTATTCTGCTA 59.232 36.000 0.00 0.00 0.00 3.49
212 213 6.969473 GGTTGCTTTTCTTGTATTCTGCTATC 59.031 38.462 0.00 0.00 0.00 2.08
214 215 7.870509 TGCTTTTCTTGTATTCTGCTATCAT 57.129 32.000 0.00 0.00 0.00 2.45
215 216 8.284945 TGCTTTTCTTGTATTCTGCTATCATT 57.715 30.769 0.00 0.00 0.00 2.57
216 217 8.742777 TGCTTTTCTTGTATTCTGCTATCATTT 58.257 29.630 0.00 0.00 0.00 2.32
217 218 9.578439 GCTTTTCTTGTATTCTGCTATCATTTT 57.422 29.630 0.00 0.00 0.00 1.82
225 226 8.786898 TGTATTCTGCTATCATTTTTCTATGCC 58.213 33.333 0.00 0.00 0.00 4.40
226 227 9.007901 GTATTCTGCTATCATTTTTCTATGCCT 57.992 33.333 0.00 0.00 0.00 4.75
227 228 7.886629 TTCTGCTATCATTTTTCTATGCCTT 57.113 32.000 0.00 0.00 0.00 4.35
228 229 7.502120 TCTGCTATCATTTTTCTATGCCTTC 57.498 36.000 0.00 0.00 0.00 3.46
229 230 6.203530 TCTGCTATCATTTTTCTATGCCTTCG 59.796 38.462 0.00 0.00 0.00 3.79
232 233 5.757850 ATCATTTTTCTATGCCTTCGGTC 57.242 39.130 0.00 0.00 0.00 4.79
233 234 3.945285 TCATTTTTCTATGCCTTCGGTCC 59.055 43.478 0.00 0.00 0.00 4.46
234 235 3.713826 TTTTTCTATGCCTTCGGTCCT 57.286 42.857 0.00 0.00 0.00 3.85
236 237 1.120530 TTCTATGCCTTCGGTCCTCC 58.879 55.000 0.00 0.00 0.00 4.30
246 247 3.386237 GGTCCTCCGCTGCTCTGT 61.386 66.667 0.00 0.00 0.00 3.41
247 248 2.659610 GTCCTCCGCTGCTCTGTT 59.340 61.111 0.00 0.00 0.00 3.16
249 250 0.458716 GTCCTCCGCTGCTCTGTTAC 60.459 60.000 0.00 0.00 0.00 2.50
252 253 0.176680 CTCCGCTGCTCTGTTACCAT 59.823 55.000 0.00 0.00 0.00 3.55
253 254 1.409064 CTCCGCTGCTCTGTTACCATA 59.591 52.381 0.00 0.00 0.00 2.74
254 255 1.136305 TCCGCTGCTCTGTTACCATAC 59.864 52.381 0.00 0.00 0.00 2.39
256 257 1.134818 CGCTGCTCTGTTACCATACCA 60.135 52.381 0.00 0.00 0.00 3.25
257 258 2.483714 CGCTGCTCTGTTACCATACCAT 60.484 50.000 0.00 0.00 0.00 3.55
258 259 2.874701 GCTGCTCTGTTACCATACCATG 59.125 50.000 0.00 0.00 0.00 3.66
259 260 3.682718 GCTGCTCTGTTACCATACCATGT 60.683 47.826 0.00 0.00 0.00 3.21
260 261 4.122776 CTGCTCTGTTACCATACCATGTC 58.877 47.826 0.00 0.00 0.00 3.06
261 262 3.118408 TGCTCTGTTACCATACCATGTCC 60.118 47.826 0.00 0.00 0.00 4.02
262 263 3.744530 GCTCTGTTACCATACCATGTCCC 60.745 52.174 0.00 0.00 0.00 4.46
263 264 3.454447 CTCTGTTACCATACCATGTCCCA 59.546 47.826 0.00 0.00 0.00 4.37
264 265 3.199071 TCTGTTACCATACCATGTCCCAC 59.801 47.826 0.00 0.00 0.00 4.61
265 266 3.186283 TGTTACCATACCATGTCCCACT 58.814 45.455 0.00 0.00 0.00 4.00
266 267 3.589735 TGTTACCATACCATGTCCCACTT 59.410 43.478 0.00 0.00 0.00 3.16
267 268 4.043561 TGTTACCATACCATGTCCCACTTT 59.956 41.667 0.00 0.00 0.00 2.66
268 269 3.825908 ACCATACCATGTCCCACTTTT 57.174 42.857 0.00 0.00 0.00 2.27
269 270 4.126520 ACCATACCATGTCCCACTTTTT 57.873 40.909 0.00 0.00 0.00 1.94
271 272 3.831911 CCATACCATGTCCCACTTTTTGT 59.168 43.478 0.00 0.00 0.00 2.83
273 274 5.105917 CCATACCATGTCCCACTTTTTGTAC 60.106 44.000 0.00 0.00 0.00 2.90
274 275 2.882137 ACCATGTCCCACTTTTTGTACG 59.118 45.455 0.00 0.00 0.00 3.67
275 276 3.142951 CCATGTCCCACTTTTTGTACGA 58.857 45.455 0.00 0.00 0.00 3.43
276 277 3.756434 CCATGTCCCACTTTTTGTACGAT 59.244 43.478 0.00 0.00 0.00 3.73
277 278 4.217550 CCATGTCCCACTTTTTGTACGATT 59.782 41.667 0.00 0.00 0.00 3.34
278 279 5.390613 CATGTCCCACTTTTTGTACGATTC 58.609 41.667 0.00 0.00 0.00 2.52
280 281 3.816523 GTCCCACTTTTTGTACGATTCCA 59.183 43.478 0.00 0.00 0.00 3.53
281 282 4.276431 GTCCCACTTTTTGTACGATTCCAA 59.724 41.667 0.00 0.00 0.00 3.53
282 283 5.048294 GTCCCACTTTTTGTACGATTCCAAT 60.048 40.000 0.00 0.00 0.00 3.16
284 285 6.887545 TCCCACTTTTTGTACGATTCCAATAT 59.112 34.615 0.00 0.00 0.00 1.28
285 286 8.047911 TCCCACTTTTTGTACGATTCCAATATA 58.952 33.333 0.00 0.00 0.00 0.86
309 4629 7.724305 ATTCTGGCGTATTATGTATTCGTTT 57.276 32.000 0.00 0.00 30.62 3.60
310 4630 6.519353 TCTGGCGTATTATGTATTCGTTTG 57.481 37.500 0.00 0.00 30.62 2.93
311 4631 5.050634 TCTGGCGTATTATGTATTCGTTTGC 60.051 40.000 0.00 0.00 30.62 3.68
312 4632 4.024725 TGGCGTATTATGTATTCGTTTGCC 60.025 41.667 0.00 0.00 38.08 4.52
313 4633 4.024725 GGCGTATTATGTATTCGTTTGCCA 60.025 41.667 0.00 0.00 37.54 4.92
335 4661 0.249120 CTGTACTGCATCCGTCCCAA 59.751 55.000 0.00 0.00 0.00 4.12
336 4662 0.036765 TGTACTGCATCCGTCCCAAC 60.037 55.000 0.00 0.00 0.00 3.77
344 4670 2.231235 GCATCCGTCCCAACTTTGAATT 59.769 45.455 0.00 0.00 0.00 2.17
416 4743 2.038557 CAGCTTACTTACCTGGTGTGGT 59.961 50.000 10.23 7.88 43.66 4.16
489 4819 3.368739 CCATGAAAAGATTTGGGCTGTCC 60.369 47.826 0.00 0.00 0.00 4.02
523 4853 1.347707 GGGACACTCACCAACTCATCA 59.652 52.381 0.00 0.00 0.00 3.07
525 4855 2.037772 GGACACTCACCAACTCATCAGT 59.962 50.000 0.00 0.00 0.00 3.41
545 4875 7.921786 TCAGTATGTTGTAGCTTATTTTGCT 57.078 32.000 0.00 0.00 40.03 3.91
546 4876 8.335532 TCAGTATGTTGTAGCTTATTTTGCTT 57.664 30.769 0.00 0.00 38.54 3.91
547 4877 9.443323 TCAGTATGTTGTAGCTTATTTTGCTTA 57.557 29.630 0.00 0.00 38.54 3.09
565 4895 6.381481 TGCTTAAGGATGTATGCAAAGATG 57.619 37.500 4.29 0.00 32.84 2.90
570 4900 6.683974 AAGGATGTATGCAAAGATGTACAC 57.316 37.500 0.00 0.00 30.67 2.90
598 4928 6.937436 TTTCTTCCTTACCTTTTGAGTGAC 57.063 37.500 0.00 0.00 0.00 3.67
599 4929 4.628074 TCTTCCTTACCTTTTGAGTGACG 58.372 43.478 0.00 0.00 0.00 4.35
608 4938 6.535274 ACCTTTTGAGTGACGTTTATGTAC 57.465 37.500 0.00 0.00 0.00 2.90
659 4989 9.607988 ATGACCGATTCTAACAATGTATTTACA 57.392 29.630 0.00 0.00 40.98 2.41
687 5017 5.419788 TGTTTTTCATCTTCCATCCATCCAG 59.580 40.000 0.00 0.00 0.00 3.86
787 5141 6.701340 TGAGATATATGATCTGGGAAAACCG 58.299 40.000 0.00 0.00 44.64 4.44
824 5178 0.307760 GCGCCCCAAGATTATCAACG 59.692 55.000 0.00 0.00 0.00 4.10
825 5179 1.663695 CGCCCCAAGATTATCAACGT 58.336 50.000 0.00 0.00 0.00 3.99
826 5180 2.828877 CGCCCCAAGATTATCAACGTA 58.171 47.619 0.00 0.00 0.00 3.57
837 5191 8.723311 CAAGATTATCAACGTAAACAAACCCTA 58.277 33.333 0.00 0.00 0.00 3.53
838 5192 8.260270 AGATTATCAACGTAAACAAACCCTAC 57.740 34.615 0.00 0.00 0.00 3.18
903 5263 7.035612 GTGCCATATTTCTCCTTTACTTTTGG 58.964 38.462 0.00 0.00 0.00 3.28
925 5285 4.334481 GGTGAAGACCAAGAAGAAAAACGA 59.666 41.667 0.00 0.00 42.59 3.85
926 5286 5.502606 GTGAAGACCAAGAAGAAAAACGAG 58.497 41.667 0.00 0.00 0.00 4.18
972 5357 3.547903 CCCCATATAACCCCTTCCCATA 58.452 50.000 0.00 0.00 0.00 2.74
989 5374 3.138283 CCCATACTCCCTCCAAAGCATTA 59.862 47.826 0.00 0.00 0.00 1.90
1014 5399 0.162507 CGCTCAGTCGCTCACAAAAG 59.837 55.000 0.00 0.00 0.00 2.27
1025 5420 2.227388 GCTCACAAAAGACATCCACCAG 59.773 50.000 0.00 0.00 0.00 4.00
1033 5428 1.078214 ACATCCACCAGCACCATCG 60.078 57.895 0.00 0.00 0.00 3.84
1127 5552 0.600057 TCGGCTCATCATCGATCCTG 59.400 55.000 0.00 0.00 0.00 3.86
1169 5594 2.739996 CGAGCTGGGCCTCTTGGAT 61.740 63.158 4.53 0.00 34.57 3.41
1237 5662 1.889530 GCTAAGCTCCCGTCCACAGT 61.890 60.000 0.00 0.00 0.00 3.55
1304 5729 0.677288 CCTCGTACAAGGTGGTGTCA 59.323 55.000 0.00 0.00 32.75 3.58
1565 6078 7.923878 TCTTTTTCTTTCCCAAATTAAGTTCCG 59.076 33.333 0.00 0.00 0.00 4.30
1570 6099 1.476488 CCCAAATTAAGTTCCGGCAGG 59.524 52.381 0.00 0.00 39.46 4.85
1615 6515 9.918630 AAATTAGAGAACCTTGAACAATTCATG 57.081 29.630 0.00 0.00 39.84 3.07
1618 6518 9.739276 TTAGAGAACCTTGAACAATTCATGTAT 57.261 29.630 0.00 0.00 42.99 2.29
1660 6560 1.972795 TGGTGTGTGGGGTTAGAGTAC 59.027 52.381 0.00 0.00 0.00 2.73
1744 6667 5.179452 ACACCCAAATGATAAGTGCTACT 57.821 39.130 0.00 0.00 31.58 2.57
1745 6668 6.308015 ACACCCAAATGATAAGTGCTACTA 57.692 37.500 0.00 0.00 31.58 1.82
1746 6669 6.113411 ACACCCAAATGATAAGTGCTACTAC 58.887 40.000 0.00 0.00 31.58 2.73
1747 6670 5.527582 CACCCAAATGATAAGTGCTACTACC 59.472 44.000 0.00 0.00 0.00 3.18
1748 6671 5.190925 ACCCAAATGATAAGTGCTACTACCA 59.809 40.000 0.00 0.00 0.00 3.25
1749 6672 6.119536 CCCAAATGATAAGTGCTACTACCAA 58.880 40.000 0.00 0.00 0.00 3.67
1750 6673 6.601613 CCCAAATGATAAGTGCTACTACCAAA 59.398 38.462 0.00 0.00 0.00 3.28
1751 6674 7.122055 CCCAAATGATAAGTGCTACTACCAAAA 59.878 37.037 0.00 0.00 0.00 2.44
1752 6675 8.519526 CCAAATGATAAGTGCTACTACCAAAAA 58.480 33.333 0.00 0.00 0.00 1.94
1755 6678 7.083875 TGATAAGTGCTACTACCAAAAATGC 57.916 36.000 0.00 0.00 0.00 3.56
1756 6679 6.884295 TGATAAGTGCTACTACCAAAAATGCT 59.116 34.615 0.00 0.00 0.00 3.79
1757 6680 8.044309 TGATAAGTGCTACTACCAAAAATGCTA 58.956 33.333 0.00 0.00 0.00 3.49
1758 6681 8.980481 ATAAGTGCTACTACCAAAAATGCTAT 57.020 30.769 0.00 0.00 0.00 2.97
1760 6683 8.980481 AAGTGCTACTACCAAAAATGCTATAT 57.020 30.769 0.00 0.00 0.00 0.86
1761 6684 8.980481 AGTGCTACTACCAAAAATGCTATATT 57.020 30.769 0.00 0.00 0.00 1.28
1762 6685 9.057089 AGTGCTACTACCAAAAATGCTATATTC 57.943 33.333 0.00 0.00 0.00 1.75
1763 6686 8.836413 GTGCTACTACCAAAAATGCTATATTCA 58.164 33.333 0.00 0.00 0.00 2.57
1764 6687 8.836413 TGCTACTACCAAAAATGCTATATTCAC 58.164 33.333 0.00 0.00 0.00 3.18
1765 6688 8.836413 GCTACTACCAAAAATGCTATATTCACA 58.164 33.333 0.00 0.00 0.00 3.58
1768 6691 8.137437 ACTACCAAAAATGCTATATTCACATGC 58.863 33.333 0.00 0.00 0.00 4.06
1769 6692 6.282930 ACCAAAAATGCTATATTCACATGCC 58.717 36.000 0.00 0.00 0.00 4.40
1770 6693 5.697633 CCAAAAATGCTATATTCACATGCCC 59.302 40.000 0.00 0.00 0.00 5.36
1771 6694 6.282167 CAAAAATGCTATATTCACATGCCCA 58.718 36.000 0.00 0.00 0.00 5.36
1772 6695 6.675413 AAAATGCTATATTCACATGCCCAT 57.325 33.333 0.00 0.00 0.00 4.00
1773 6696 6.675413 AAATGCTATATTCACATGCCCATT 57.325 33.333 0.00 0.00 0.00 3.16
1774 6697 7.779754 AAATGCTATATTCACATGCCCATTA 57.220 32.000 0.00 0.00 0.00 1.90
1775 6698 6.764308 ATGCTATATTCACATGCCCATTAC 57.236 37.500 0.00 0.00 0.00 1.89
1776 6699 5.629125 TGCTATATTCACATGCCCATTACA 58.371 37.500 0.00 0.00 0.00 2.41
1777 6700 6.247676 TGCTATATTCACATGCCCATTACAT 58.752 36.000 0.00 0.00 0.00 2.29
1786 6709 4.801891 CATGCCCATTACATGCAGATTAC 58.198 43.478 0.00 0.00 38.58 1.89
1787 6710 2.877786 TGCCCATTACATGCAGATTACG 59.122 45.455 0.00 0.00 0.00 3.18
1788 6711 2.226437 GCCCATTACATGCAGATTACGG 59.774 50.000 0.00 0.00 0.00 4.02
1789 6712 2.813754 CCCATTACATGCAGATTACGGG 59.186 50.000 0.00 0.00 0.00 5.28
1790 6713 2.813754 CCATTACATGCAGATTACGGGG 59.186 50.000 0.00 0.00 0.00 5.73
1791 6714 2.631160 TTACATGCAGATTACGGGGG 57.369 50.000 0.00 0.00 0.00 5.40
1792 6715 1.502690 TACATGCAGATTACGGGGGT 58.497 50.000 0.00 0.00 0.00 4.95
1793 6716 0.107214 ACATGCAGATTACGGGGGTG 60.107 55.000 0.00 0.00 0.00 4.61
1794 6717 0.107214 CATGCAGATTACGGGGGTGT 60.107 55.000 0.00 0.00 0.00 4.16
1795 6718 0.623723 ATGCAGATTACGGGGGTGTT 59.376 50.000 0.00 0.00 0.00 3.32
1796 6719 0.402504 TGCAGATTACGGGGGTGTTT 59.597 50.000 0.00 0.00 0.00 2.83
1797 6720 0.808755 GCAGATTACGGGGGTGTTTG 59.191 55.000 0.00 0.00 0.00 2.93
1798 6721 1.459450 CAGATTACGGGGGTGTTTGG 58.541 55.000 0.00 0.00 0.00 3.28
1799 6722 1.069775 AGATTACGGGGGTGTTTGGT 58.930 50.000 0.00 0.00 0.00 3.67
1800 6723 1.426215 AGATTACGGGGGTGTTTGGTT 59.574 47.619 0.00 0.00 0.00 3.67
1801 6724 1.814394 GATTACGGGGGTGTTTGGTTC 59.186 52.381 0.00 0.00 0.00 3.62
1802 6725 0.178995 TTACGGGGGTGTTTGGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
1803 6726 1.351080 TACGGGGGTGTTTGGTTCCA 61.351 55.000 0.00 0.00 0.00 3.53
1804 6727 1.901464 CGGGGGTGTTTGGTTCCAG 60.901 63.158 0.00 0.00 0.00 3.86
1805 6728 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
1806 6729 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
1807 6730 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
1808 6731 0.114364 GGGTGTTTGGTTCCAGGGAT 59.886 55.000 0.00 0.00 0.00 3.85
1809 6732 1.482365 GGGTGTTTGGTTCCAGGGATT 60.482 52.381 0.00 0.00 0.00 3.01
1810 6733 2.325484 GGTGTTTGGTTCCAGGGATTT 58.675 47.619 0.00 0.00 0.00 2.17
1811 6734 2.703536 GGTGTTTGGTTCCAGGGATTTT 59.296 45.455 0.00 0.00 0.00 1.82
1812 6735 3.135712 GGTGTTTGGTTCCAGGGATTTTT 59.864 43.478 0.00 0.00 0.00 1.94
1851 6774 5.622346 AAAAATCCCTAGCAAACCAAACA 57.378 34.783 0.00 0.00 0.00 2.83
1852 6775 4.871933 AAATCCCTAGCAAACCAAACAG 57.128 40.909 0.00 0.00 0.00 3.16
1853 6776 2.286365 TCCCTAGCAAACCAAACAGG 57.714 50.000 0.00 0.00 45.67 4.00
1854 6777 1.777878 TCCCTAGCAAACCAAACAGGA 59.222 47.619 0.00 0.00 41.22 3.86
1855 6778 2.378547 TCCCTAGCAAACCAAACAGGAT 59.621 45.455 0.00 0.00 41.22 3.24
1856 6779 2.493278 CCCTAGCAAACCAAACAGGATG 59.507 50.000 0.00 0.00 46.00 3.51
1857 6780 2.493278 CCTAGCAAACCAAACAGGATGG 59.507 50.000 0.00 0.00 43.62 3.51
1858 6781 1.341080 AGCAAACCAAACAGGATGGG 58.659 50.000 0.00 0.00 43.62 4.00
1859 6782 1.133199 AGCAAACCAAACAGGATGGGA 60.133 47.619 0.00 0.00 43.62 4.37
1860 6783 1.000843 GCAAACCAAACAGGATGGGAC 59.999 52.381 0.00 0.00 43.62 4.46
1861 6784 2.597455 CAAACCAAACAGGATGGGACT 58.403 47.619 0.00 0.00 43.62 3.85
1862 6785 2.965147 CAAACCAAACAGGATGGGACTT 59.035 45.455 0.00 0.00 43.62 3.01
1863 6786 3.328535 AACCAAACAGGATGGGACTTT 57.671 42.857 0.00 0.00 43.62 2.66
1864 6787 3.328535 ACCAAACAGGATGGGACTTTT 57.671 42.857 0.00 0.00 43.62 2.27
1865 6788 3.653164 ACCAAACAGGATGGGACTTTTT 58.347 40.909 0.00 0.00 43.62 1.94
1886 6809 7.929941 TTTTTGGGACATTTTGCTAAAAGTT 57.070 28.000 3.19 0.00 37.32 2.66
1887 6810 7.546778 TTTTGGGACATTTTGCTAAAAGTTC 57.453 32.000 3.19 1.30 39.30 3.01
1888 6811 6.478512 TTGGGACATTTTGCTAAAAGTTCT 57.521 33.333 7.12 0.00 39.30 3.01
1892 6815 7.504238 TGGGACATTTTGCTAAAAGTTCTTAGA 59.496 33.333 7.12 0.00 33.22 2.10
1897 6820 8.694394 CATTTTGCTAAAAGTTCTTAGAAGCAC 58.306 33.333 3.82 0.00 38.15 4.40
1902 6825 4.984146 AAAGTTCTTAGAAGCACCTCCT 57.016 40.909 0.00 0.00 0.00 3.69
1905 6828 3.904339 AGTTCTTAGAAGCACCTCCTTGA 59.096 43.478 0.00 0.00 0.00 3.02
1906 6829 4.020662 AGTTCTTAGAAGCACCTCCTTGAG 60.021 45.833 0.00 0.00 0.00 3.02
1908 6831 3.766591 TCTTAGAAGCACCTCCTTGAGAG 59.233 47.826 0.00 0.00 42.83 3.20
1909 6832 2.022718 AGAAGCACCTCCTTGAGAGT 57.977 50.000 0.00 0.00 41.47 3.24
1910 6833 1.899142 AGAAGCACCTCCTTGAGAGTC 59.101 52.381 0.00 0.00 41.47 3.36
1911 6834 1.899142 GAAGCACCTCCTTGAGAGTCT 59.101 52.381 0.00 0.00 41.47 3.24
1912 6835 2.022718 AGCACCTCCTTGAGAGTCTT 57.977 50.000 0.00 0.00 41.47 3.01
1913 6836 2.334023 AGCACCTCCTTGAGAGTCTTT 58.666 47.619 0.00 0.00 41.47 2.52
1914 6837 2.708325 AGCACCTCCTTGAGAGTCTTTT 59.292 45.455 0.00 0.00 41.47 2.27
1915 6838 3.137360 AGCACCTCCTTGAGAGTCTTTTT 59.863 43.478 0.00 0.00 41.47 1.94
2331 7254 4.759205 ATTTCCAGGTGGGCGGGC 62.759 66.667 0.00 0.00 36.21 6.13
2358 7281 2.632831 CCCCCTTAGCCCAATCAGA 58.367 57.895 0.00 0.00 0.00 3.27
2359 7282 0.926293 CCCCCTTAGCCCAATCAGAA 59.074 55.000 0.00 0.00 0.00 3.02
2360 7283 1.287739 CCCCCTTAGCCCAATCAGAAA 59.712 52.381 0.00 0.00 0.00 2.52
2361 7284 2.379005 CCCCTTAGCCCAATCAGAAAC 58.621 52.381 0.00 0.00 0.00 2.78
2362 7285 2.024941 CCCCTTAGCCCAATCAGAAACT 60.025 50.000 0.00 0.00 0.00 2.66
2363 7286 3.019564 CCCTTAGCCCAATCAGAAACTG 58.980 50.000 0.00 0.00 0.00 3.16
2364 7287 2.424956 CCTTAGCCCAATCAGAAACTGC 59.575 50.000 0.00 0.00 0.00 4.40
2365 7288 2.128771 TAGCCCAATCAGAAACTGCC 57.871 50.000 0.00 0.00 0.00 4.85
2366 7289 0.112995 AGCCCAATCAGAAACTGCCA 59.887 50.000 0.00 0.00 0.00 4.92
2367 7290 0.968405 GCCCAATCAGAAACTGCCAA 59.032 50.000 0.00 0.00 0.00 4.52
2368 7291 1.067354 GCCCAATCAGAAACTGCCAAG 60.067 52.381 0.00 0.00 0.00 3.61
2369 7292 2.242043 CCCAATCAGAAACTGCCAAGT 58.758 47.619 0.00 0.00 38.71 3.16
2371 7294 3.553508 CCCAATCAGAAACTGCCAAGTTG 60.554 47.826 0.00 0.00 46.15 3.16
2372 7295 3.553508 CCAATCAGAAACTGCCAAGTTGG 60.554 47.826 18.17 18.17 46.15 3.77
2373 7296 2.727123 TCAGAAACTGCCAAGTTGGA 57.273 45.000 26.52 9.73 46.15 3.53
2374 7297 3.228188 TCAGAAACTGCCAAGTTGGAT 57.772 42.857 26.52 7.01 46.15 3.41
2375 7298 3.565307 TCAGAAACTGCCAAGTTGGATT 58.435 40.909 26.52 12.80 46.15 3.01
2376 7299 3.569701 TCAGAAACTGCCAAGTTGGATTC 59.430 43.478 26.52 20.16 46.15 2.52
2377 7300 3.318839 CAGAAACTGCCAAGTTGGATTCA 59.681 43.478 26.52 12.85 46.15 2.57
2378 7301 3.319122 AGAAACTGCCAAGTTGGATTCAC 59.681 43.478 26.52 7.79 46.15 3.18
2379 7302 2.664402 ACTGCCAAGTTGGATTCACT 57.336 45.000 26.52 0.56 40.96 3.41
2380 7303 2.508526 ACTGCCAAGTTGGATTCACTC 58.491 47.619 26.52 6.29 40.96 3.51
2381 7304 1.815003 CTGCCAAGTTGGATTCACTCC 59.185 52.381 26.52 5.53 40.96 3.85
2391 7314 3.388345 GGATTCACTCCGTAATCTCCC 57.612 52.381 0.00 0.00 33.29 4.30
2392 7315 2.037381 GGATTCACTCCGTAATCTCCCC 59.963 54.545 0.00 0.00 33.29 4.81
2393 7316 1.108776 TTCACTCCGTAATCTCCCCG 58.891 55.000 0.00 0.00 0.00 5.73
2394 7317 0.033796 TCACTCCGTAATCTCCCCGT 60.034 55.000 0.00 0.00 0.00 5.28
2395 7318 1.212688 TCACTCCGTAATCTCCCCGTA 59.787 52.381 0.00 0.00 0.00 4.02
2396 7319 2.026641 CACTCCGTAATCTCCCCGTAA 58.973 52.381 0.00 0.00 0.00 3.18
2397 7320 2.626743 CACTCCGTAATCTCCCCGTAAT 59.373 50.000 0.00 0.00 0.00 1.89
2398 7321 2.626743 ACTCCGTAATCTCCCCGTAATG 59.373 50.000 0.00 0.00 0.00 1.90
2399 7322 1.965643 TCCGTAATCTCCCCGTAATGG 59.034 52.381 0.00 0.00 37.55 3.16
2408 7331 4.997884 CCGTAATGGGCCCATGAA 57.002 55.556 38.06 25.56 36.68 2.57
2409 7332 3.437642 CCGTAATGGGCCCATGAAT 57.562 52.632 38.06 24.53 36.68 2.57
2410 7333 1.247567 CCGTAATGGGCCCATGAATC 58.752 55.000 38.06 24.15 36.68 2.52
2411 7334 1.202927 CCGTAATGGGCCCATGAATCT 60.203 52.381 38.06 23.75 36.68 2.40
2412 7335 2.039746 CCGTAATGGGCCCATGAATCTA 59.960 50.000 38.06 22.61 36.68 1.98
2413 7336 3.338249 CGTAATGGGCCCATGAATCTAG 58.662 50.000 38.06 19.77 36.68 2.43
2414 7337 2.299326 AATGGGCCCATGAATCTAGC 57.701 50.000 38.06 0.00 36.68 3.42
2415 7338 1.151760 ATGGGCCCATGAATCTAGCA 58.848 50.000 37.06 4.09 35.03 3.49
2416 7339 1.151760 TGGGCCCATGAATCTAGCAT 58.848 50.000 24.45 0.00 0.00 3.79
2417 7340 1.500303 TGGGCCCATGAATCTAGCATT 59.500 47.619 24.45 0.00 0.00 3.56
2418 7341 2.091166 TGGGCCCATGAATCTAGCATTT 60.091 45.455 24.45 0.00 0.00 2.32
2419 7342 2.967887 GGGCCCATGAATCTAGCATTTT 59.032 45.455 19.95 0.00 0.00 1.82
2420 7343 3.389002 GGGCCCATGAATCTAGCATTTTT 59.611 43.478 19.95 0.00 0.00 1.94
2533 7463 8.715191 AAAGTTGTCATGCTTCACAAATAAAA 57.285 26.923 0.00 0.00 34.33 1.52
2544 7474 7.444792 TGCTTCACAAATAAAATTGCCATCTTT 59.555 29.630 0.00 0.00 33.52 2.52
2600 7530 2.607526 CGAAATTGCTTCATGCCACACA 60.608 45.455 0.00 0.00 42.00 3.72
2604 7534 1.330234 TGCTTCATGCCACACATTGT 58.670 45.000 0.00 0.00 42.00 2.71
2668 7600 3.399330 ACCCAAACGATAAGTGTCACAG 58.601 45.455 5.62 0.00 0.00 3.66
2682 7614 0.250858 TCACAGGTGTGGCATGAAGG 60.251 55.000 10.18 0.00 45.65 3.46
2730 7662 7.521509 AACTAAAGTTATCGTCCGAATTGAG 57.478 36.000 0.00 0.00 36.32 3.02
2788 7722 4.778534 AGAAGTTGCCATGATTGACAAG 57.221 40.909 0.00 0.00 0.00 3.16
2805 7739 4.072131 GACAAGTAAAGTTGCCATCCTCA 58.928 43.478 0.00 0.00 0.00 3.86
2808 7742 1.737793 GTAAAGTTGCCATCCTCACGG 59.262 52.381 0.00 0.00 0.00 4.94
2809 7743 0.110486 AAAGTTGCCATCCTCACGGT 59.890 50.000 0.00 0.00 0.00 4.83
2829 7763 8.524487 TCACGGTACTAAATTTGGCATAAAAAT 58.476 29.630 0.00 0.00 0.00 1.82
2830 7764 8.591312 CACGGTACTAAATTTGGCATAAAAATG 58.409 33.333 0.00 0.00 0.00 2.32
2831 7765 8.524487 ACGGTACTAAATTTGGCATAAAAATGA 58.476 29.630 0.00 0.00 0.00 2.57
2843 7778 4.202050 GCATAAAAATGATCGGAGTTGCCT 60.202 41.667 0.00 0.00 0.00 4.75
2917 7852 2.218603 GTTGTGGTTTCCGACATCAGT 58.781 47.619 0.00 0.00 0.00 3.41
2945 7880 4.627284 TCCGGGACTTAACTTGAATCAA 57.373 40.909 0.00 0.00 0.00 2.57
3099 8045 0.322322 TCCCGTTCAACAAGGCGTAT 59.678 50.000 0.00 0.00 0.00 3.06
3115 8061 1.540146 CGTATGGGATGTCGGCATTCA 60.540 52.381 11.13 9.87 35.07 2.57
3210 8156 5.416952 CACCAAGAAGCTCCTTGAATTGTAT 59.583 40.000 15.15 0.00 44.66 2.29
3221 8167 6.122277 TCCTTGAATTGTATAAGGGCTTCAG 58.878 40.000 0.00 0.00 41.01 3.02
3323 8269 3.228188 AGGCATCAACTTTGACCTTCA 57.772 42.857 0.00 0.00 40.49 3.02
3324 8270 3.771216 AGGCATCAACTTTGACCTTCAT 58.229 40.909 0.00 0.00 40.49 2.57
3372 8324 4.920828 GGTGTCACCCACATTGGT 57.079 55.556 11.30 0.00 46.44 3.67
3432 8387 6.987748 CATCCTCATGAAGTGGATCCTCCAT 61.988 48.000 14.23 6.53 45.18 3.41
3518 8473 0.247736 AAGGTGATGCTCGTGGAGTC 59.752 55.000 0.00 0.00 31.39 3.36
3719 8674 6.094603 TGGGTTATCGAGTTCACTAAGTAGAC 59.905 42.308 0.00 0.00 0.00 2.59
3729 8691 5.324784 TCACTAAGTAGACGCATGACAAT 57.675 39.130 0.00 0.00 0.00 2.71
3853 8835 7.458397 TCCAAATACTATTGTTTGTGTCCTCT 58.542 34.615 2.46 0.00 33.19 3.69
3978 8979 8.367660 AGTGAAGTGTTATTGATCTTCCTCTA 57.632 34.615 0.00 0.00 36.47 2.43
4009 9010 1.129251 CAGCGCAACGACTCATGAATT 59.871 47.619 11.47 0.00 0.00 2.17
4054 9055 7.444183 GCACTTGATGTTATACTAATAGGGCAA 59.556 37.037 0.00 0.00 30.23 4.52
4069 9075 0.899717 GGCAATGGAAGTGGAGGCAA 60.900 55.000 0.00 0.00 28.90 4.52
4102 9108 2.596904 TCATAGCAAGGAAGCGTACC 57.403 50.000 0.00 0.00 40.15 3.34
4134 9140 7.615582 TTGGACATTCAATATGAACAGACTC 57.384 36.000 0.00 0.00 39.45 3.36
4137 9143 6.037610 GGACATTCAATATGAACAGACTCACC 59.962 42.308 0.00 0.00 39.45 4.02
4138 9144 6.475504 ACATTCAATATGAACAGACTCACCA 58.524 36.000 0.00 0.00 39.45 4.17
4139 9145 7.114754 ACATTCAATATGAACAGACTCACCAT 58.885 34.615 0.00 0.00 39.45 3.55
4140 9146 6.990341 TTCAATATGAACAGACTCACCATG 57.010 37.500 0.00 0.00 30.26 3.66
4306 9312 3.788616 TTGCCGGCTGCTTTGCAAC 62.789 57.895 29.70 0.00 38.68 4.17
4332 9338 2.388232 GCGGCCCACACTTACGAAG 61.388 63.158 0.00 0.00 0.00 3.79
4367 9377 2.622452 CCTGGTGGATGCTTTGGATCTT 60.622 50.000 0.00 0.00 34.57 2.40
4383 9393 1.674322 CTTTCACGGGCGTGGGAAT 60.674 57.895 0.00 0.00 45.43 3.01
4397 9407 1.216678 TGGGAATGTGGTGGTGACTTT 59.783 47.619 0.00 0.00 0.00 2.66
4403 9413 1.891919 TGGTGGTGACTTTCGCTGC 60.892 57.895 0.00 0.00 0.00 5.25
4406 9416 1.146041 TGGTGACTTTCGCTGCTGT 59.854 52.632 0.00 0.00 0.00 4.40
4412 9422 1.370900 CTTTCGCTGCTGTGTTGGC 60.371 57.895 3.96 0.00 0.00 4.52
4446 9459 1.135286 GGCATTGGCAGTTTAGCAGAC 60.135 52.381 5.17 0.00 43.71 3.51
4447 9460 1.541147 GCATTGGCAGTTTAGCAGACA 59.459 47.619 0.00 0.00 40.72 3.41
4455 9468 1.080093 TTTAGCAGACACGCGGAGG 60.080 57.895 12.47 1.38 36.85 4.30
4489 9502 2.046988 TCGGTGGACGCTACTCGA 60.047 61.111 0.00 0.00 43.86 4.04
4503 9516 2.433491 TCGATTTGCGGTGTCGGG 60.433 61.111 0.00 0.00 41.33 5.14
4505 9518 2.736682 CGATTTGCGGTGTCGGGTC 61.737 63.158 0.00 0.00 36.79 4.46
4508 9521 2.684192 ATTTGCGGTGTCGGGTCCAA 62.684 55.000 0.00 0.00 36.79 3.53
4509 9522 2.684192 TTTGCGGTGTCGGGTCCAAT 62.684 55.000 0.00 0.00 36.79 3.16
4527 9540 3.198068 CAATTGGATGTGGACTACTCGG 58.802 50.000 0.00 0.00 0.00 4.63
4528 9541 1.933021 TTGGATGTGGACTACTCGGT 58.067 50.000 0.00 0.00 0.00 4.69
4530 9543 2.253610 TGGATGTGGACTACTCGGTTT 58.746 47.619 0.00 0.00 0.00 3.27
4531 9544 2.028476 TGGATGTGGACTACTCGGTTTG 60.028 50.000 0.00 0.00 0.00 2.93
4532 9545 2.232941 GGATGTGGACTACTCGGTTTGA 59.767 50.000 0.00 0.00 0.00 2.69
4536 9549 3.057734 GTGGACTACTCGGTTTGACAAG 58.942 50.000 0.00 0.00 0.00 3.16
4537 9550 2.696707 TGGACTACTCGGTTTGACAAGT 59.303 45.455 0.00 0.00 0.00 3.16
4553 9572 4.021544 TGACAAGTTTTATTGTGGCCCATC 60.022 41.667 0.00 0.00 43.32 3.51
4565 9584 1.207791 GGCCCATCTCTTCTTGAGGA 58.792 55.000 0.00 0.00 42.86 3.71
4572 9591 4.324874 CCATCTCTTCTTGAGGAATTGGGT 60.325 45.833 0.00 0.00 42.86 4.51
4575 9594 2.986019 TCTTCTTGAGGAATTGGGTCCA 59.014 45.455 0.00 0.00 40.48 4.02
4577 9596 3.893753 TCTTGAGGAATTGGGTCCAAA 57.106 42.857 6.52 0.00 40.48 3.28
4579 9598 4.750941 TCTTGAGGAATTGGGTCCAAATT 58.249 39.130 3.66 3.66 40.48 1.82
4581 9600 3.172339 TGAGGAATTGGGTCCAAATTGG 58.828 45.455 9.11 5.48 40.48 3.16
4582 9601 3.181413 TGAGGAATTGGGTCCAAATTGGA 60.181 43.478 11.23 11.23 45.98 3.53
4627 9987 1.985159 GTGGGGGATGCCTGATACATA 59.015 52.381 2.19 0.00 0.00 2.29
4628 9988 2.578021 GTGGGGGATGCCTGATACATAT 59.422 50.000 2.19 0.00 0.00 1.78
4632 9992 4.660303 GGGGGATGCCTGATACATATATCA 59.340 45.833 2.19 0.00 44.07 2.15
4636 9996 6.341316 GGATGCCTGATACATATATCAACGT 58.659 40.000 0.00 0.00 45.26 3.99
4662 10022 0.470766 TCGTGGTGGCTGGTAACTTT 59.529 50.000 0.00 0.00 37.61 2.66
4663 10023 0.591170 CGTGGTGGCTGGTAACTTTG 59.409 55.000 0.00 0.00 37.61 2.77
4668 10028 2.566529 GCTGGTAACTTTGGCGGC 59.433 61.111 0.00 0.00 37.61 6.53
4701 10061 0.692476 TGGATGTGGCTGCTAGTTGT 59.308 50.000 0.00 0.00 0.00 3.32
4745 10105 0.684805 GTGGTTTGGGGTGTGGTTGA 60.685 55.000 0.00 0.00 0.00 3.18
4746 10106 0.263172 TGGTTTGGGGTGTGGTTGAT 59.737 50.000 0.00 0.00 0.00 2.57
4747 10107 0.678950 GGTTTGGGGTGTGGTTGATG 59.321 55.000 0.00 0.00 0.00 3.07
4748 10108 1.698506 GTTTGGGGTGTGGTTGATGA 58.301 50.000 0.00 0.00 0.00 2.92
4794 10157 0.402504 TTGGGCCTCTTTTTCGGCTA 59.597 50.000 4.53 0.00 45.57 3.93
4803 10166 2.490903 TCTTTTTCGGCTAGCTACGAGT 59.509 45.455 15.72 0.00 40.51 4.18
4872 10235 0.981183 AGGTCCCGTGCTCATGTTTA 59.019 50.000 0.00 0.00 0.00 2.01
4883 10246 4.025396 GTGCTCATGTTTATGATGGAGTCG 60.025 45.833 0.00 0.00 42.19 4.18
4885 10248 4.740634 GCTCATGTTTATGATGGAGTCGGA 60.741 45.833 0.00 0.00 42.19 4.55
4915 10278 1.152631 TGCGGTGAGATCGGGGATA 60.153 57.895 0.00 0.00 0.00 2.59
4918 10281 1.863662 CGGTGAGATCGGGGATACGG 61.864 65.000 0.00 0.00 37.60 4.02
4943 10306 1.757682 TGGACGAAAGCCTTGTGTTT 58.242 45.000 0.00 0.00 0.00 2.83
4951 10314 4.503910 GAAAGCCTTGTGTTTTCCTTGTT 58.496 39.130 0.00 0.00 0.00 2.83
4952 10315 5.656480 GAAAGCCTTGTGTTTTCCTTGTTA 58.344 37.500 0.00 0.00 0.00 2.41
4958 10321 3.357203 TGTGTTTTCCTTGTTAGCACCA 58.643 40.909 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.260869 TTTCCAGCGCAAGTGGCTC 61.261 57.895 11.47 0.00 39.08 4.70
4 5 2.050077 GTTTCCAGCGCAAGTGGC 60.050 61.111 11.47 0.00 38.08 5.01
5 6 0.109597 GATGTTTCCAGCGCAAGTGG 60.110 55.000 11.47 9.36 39.08 4.00
6 7 0.109597 GGATGTTTCCAGCGCAAGTG 60.110 55.000 11.47 0.00 42.12 3.16
7 8 0.250901 AGGATGTTTCCAGCGCAAGT 60.251 50.000 11.47 0.00 45.30 3.16
9 10 0.036732 AGAGGATGTTTCCAGCGCAA 59.963 50.000 11.47 0.00 45.30 4.85
10 11 0.036732 AAGAGGATGTTTCCAGCGCA 59.963 50.000 11.47 0.00 45.30 6.09
11 12 0.729690 GAAGAGGATGTTTCCAGCGC 59.270 55.000 0.00 0.00 45.30 5.92
12 13 2.099141 TGAAGAGGATGTTTCCAGCG 57.901 50.000 0.00 0.00 45.30 5.18
15 16 5.491070 CTGTACATGAAGAGGATGTTTCCA 58.509 41.667 0.00 0.00 45.30 3.53
16 17 4.878397 CCTGTACATGAAGAGGATGTTTCC 59.122 45.833 0.00 0.00 42.96 3.13
17 18 5.734720 TCCTGTACATGAAGAGGATGTTTC 58.265 41.667 0.00 0.00 34.17 2.78
18 19 5.762179 TCCTGTACATGAAGAGGATGTTT 57.238 39.130 0.00 0.00 34.17 2.83
19 20 5.762179 TTCCTGTACATGAAGAGGATGTT 57.238 39.130 9.25 0.00 38.62 2.71
20 21 5.965033 ATTCCTGTACATGAAGAGGATGT 57.035 39.130 16.98 0.00 38.62 3.06
22 23 8.717717 TGAATTATTCCTGTACATGAAGAGGAT 58.282 33.333 16.98 3.98 38.62 3.24
23 24 8.089625 TGAATTATTCCTGTACATGAAGAGGA 57.910 34.615 16.98 7.35 37.16 3.71
24 25 7.041508 GCTGAATTATTCCTGTACATGAAGAGG 60.042 40.741 16.98 5.16 0.00 3.69
25 26 7.496920 TGCTGAATTATTCCTGTACATGAAGAG 59.503 37.037 16.98 4.23 0.00 2.85
26 27 7.337938 TGCTGAATTATTCCTGTACATGAAGA 58.662 34.615 16.98 11.08 0.00 2.87
27 28 7.255035 CCTGCTGAATTATTCCTGTACATGAAG 60.255 40.741 16.98 4.97 0.00 3.02
28 29 6.543465 CCTGCTGAATTATTCCTGTACATGAA 59.457 38.462 14.78 14.78 0.00 2.57
29 30 6.057533 CCTGCTGAATTATTCCTGTACATGA 58.942 40.000 0.00 0.00 0.00 3.07
30 31 5.824624 ACCTGCTGAATTATTCCTGTACATG 59.175 40.000 0.00 0.00 0.00 3.21
31 32 5.824624 CACCTGCTGAATTATTCCTGTACAT 59.175 40.000 0.00 0.00 0.00 2.29
32 33 5.185454 CACCTGCTGAATTATTCCTGTACA 58.815 41.667 2.22 0.00 0.00 2.90
33 34 5.186198 ACACCTGCTGAATTATTCCTGTAC 58.814 41.667 2.22 0.00 0.00 2.90
34 35 5.435686 ACACCTGCTGAATTATTCCTGTA 57.564 39.130 2.22 0.00 0.00 2.74
35 36 4.307032 ACACCTGCTGAATTATTCCTGT 57.693 40.909 2.22 0.00 0.00 4.00
36 37 5.882557 AGTTACACCTGCTGAATTATTCCTG 59.117 40.000 2.22 0.00 0.00 3.86
38 39 5.648092 ACAGTTACACCTGCTGAATTATTCC 59.352 40.000 2.22 0.00 35.83 3.01
39 40 6.743575 ACAGTTACACCTGCTGAATTATTC 57.256 37.500 0.00 0.00 35.83 1.75
40 41 7.336931 CCTTACAGTTACACCTGCTGAATTATT 59.663 37.037 0.00 0.00 35.83 1.40
41 42 6.823689 CCTTACAGTTACACCTGCTGAATTAT 59.176 38.462 0.00 0.00 35.83 1.28
42 43 6.170506 CCTTACAGTTACACCTGCTGAATTA 58.829 40.000 0.00 0.00 35.83 1.40
43 44 5.003804 CCTTACAGTTACACCTGCTGAATT 58.996 41.667 0.00 0.00 35.83 2.17
44 45 4.579869 CCTTACAGTTACACCTGCTGAAT 58.420 43.478 0.00 0.00 35.83 2.57
45 46 3.805807 GCCTTACAGTTACACCTGCTGAA 60.806 47.826 0.00 0.00 35.83 3.02
49 50 2.076863 CAGCCTTACAGTTACACCTGC 58.923 52.381 0.00 0.00 35.83 4.85
50 51 3.067106 CACAGCCTTACAGTTACACCTG 58.933 50.000 0.00 0.00 38.45 4.00
53 54 2.223377 GCACACAGCCTTACAGTTACAC 59.777 50.000 0.00 0.00 37.23 2.90
54 55 2.489971 GCACACAGCCTTACAGTTACA 58.510 47.619 0.00 0.00 37.23 2.41
75 76 8.662781 AATTCGAGTTCTTTGCAAGCTATATA 57.337 30.769 0.00 0.00 0.00 0.86
76 77 7.559590 AATTCGAGTTCTTTGCAAGCTATAT 57.440 32.000 0.00 0.00 0.00 0.86
77 78 6.985188 AATTCGAGTTCTTTGCAAGCTATA 57.015 33.333 0.00 0.00 0.00 1.31
80 81 5.239525 AGTTAATTCGAGTTCTTTGCAAGCT 59.760 36.000 0.00 0.00 0.00 3.74
81 82 5.452777 AGTTAATTCGAGTTCTTTGCAAGC 58.547 37.500 0.00 0.00 0.00 4.01
83 84 6.861065 AGAGTTAATTCGAGTTCTTTGCAA 57.139 33.333 0.00 0.00 0.00 4.08
84 85 6.861065 AAGAGTTAATTCGAGTTCTTTGCA 57.139 33.333 0.00 0.00 0.00 4.08
85 86 7.540362 CAAAGAGTTAATTCGAGTTCTTTGC 57.460 36.000 15.48 0.00 42.26 3.68
87 88 8.674607 ACAACAAAGAGTTAATTCGAGTTCTTT 58.325 29.630 0.00 0.00 38.74 2.52
88 89 8.209917 ACAACAAAGAGTTAATTCGAGTTCTT 57.790 30.769 0.00 0.00 38.74 2.52
89 90 7.787725 ACAACAAAGAGTTAATTCGAGTTCT 57.212 32.000 0.00 0.00 38.74 3.01
90 91 8.836959 AAACAACAAAGAGTTAATTCGAGTTC 57.163 30.769 0.00 0.00 38.74 3.01
91 92 9.285770 GAAAACAACAAAGAGTTAATTCGAGTT 57.714 29.630 0.00 0.00 38.74 3.01
92 93 8.674607 AGAAAACAACAAAGAGTTAATTCGAGT 58.325 29.630 0.00 0.00 38.74 4.18
101 102 8.137437 CCATCACATAGAAAACAACAAAGAGTT 58.863 33.333 0.00 0.00 42.42 3.01
102 103 7.651808 CCATCACATAGAAAACAACAAAGAGT 58.348 34.615 0.00 0.00 0.00 3.24
103 104 6.583806 GCCATCACATAGAAAACAACAAAGAG 59.416 38.462 0.00 0.00 0.00 2.85
105 106 6.449698 AGCCATCACATAGAAAACAACAAAG 58.550 36.000 0.00 0.00 0.00 2.77
107 108 6.939730 TCTAGCCATCACATAGAAAACAACAA 59.060 34.615 0.00 0.00 0.00 2.83
108 109 6.472016 TCTAGCCATCACATAGAAAACAACA 58.528 36.000 0.00 0.00 0.00 3.33
109 110 6.985188 TCTAGCCATCACATAGAAAACAAC 57.015 37.500 0.00 0.00 0.00 3.32
110 111 9.276590 CATATCTAGCCATCACATAGAAAACAA 57.723 33.333 0.00 0.00 0.00 2.83
111 112 7.388776 GCATATCTAGCCATCACATAGAAAACA 59.611 37.037 0.00 0.00 0.00 2.83
112 113 7.746929 GCATATCTAGCCATCACATAGAAAAC 58.253 38.462 0.00 0.00 0.00 2.43
113 114 7.912056 GCATATCTAGCCATCACATAGAAAA 57.088 36.000 0.00 0.00 0.00 2.29
127 128 4.734398 ATAGCTCACAGGCATATCTAGC 57.266 45.455 0.00 0.00 34.17 3.42
128 129 9.911138 CATAATATAGCTCACAGGCATATCTAG 57.089 37.037 0.00 0.00 34.17 2.43
130 131 8.316497 ACATAATATAGCTCACAGGCATATCT 57.684 34.615 0.00 0.00 34.17 1.98
133 134 9.822185 CAATACATAATATAGCTCACAGGCATA 57.178 33.333 0.00 0.00 34.17 3.14
135 136 7.679783 ACAATACATAATATAGCTCACAGGCA 58.320 34.615 0.00 0.00 34.17 4.75
136 137 8.553459 AACAATACATAATATAGCTCACAGGC 57.447 34.615 0.00 0.00 0.00 4.85
153 154 9.976255 GTACATTAAGCGTTCATTAACAATACA 57.024 29.630 0.00 0.00 35.16 2.29
158 159 7.661127 ACAGTACATTAAGCGTTCATTAACA 57.339 32.000 0.00 0.00 35.16 2.41
159 160 8.225107 TGAACAGTACATTAAGCGTTCATTAAC 58.775 33.333 0.00 0.00 38.18 2.01
161 162 7.892778 TGAACAGTACATTAAGCGTTCATTA 57.107 32.000 0.00 0.00 38.18 1.90
163 164 6.985188 ATGAACAGTACATTAAGCGTTCAT 57.015 33.333 9.19 9.19 44.51 2.57
164 165 5.121611 CCATGAACAGTACATTAAGCGTTCA 59.878 40.000 5.36 5.36 44.67 3.18
165 166 5.121768 ACCATGAACAGTACATTAAGCGTTC 59.878 40.000 0.00 0.00 34.69 3.95
167 168 4.575885 ACCATGAACAGTACATTAAGCGT 58.424 39.130 0.00 0.00 0.00 5.07
168 169 5.323900 CAACCATGAACAGTACATTAAGCG 58.676 41.667 0.00 0.00 0.00 4.68
170 171 6.500684 AGCAACCATGAACAGTACATTAAG 57.499 37.500 0.00 0.00 0.00 1.85
171 172 6.892658 AAGCAACCATGAACAGTACATTAA 57.107 33.333 0.00 0.00 0.00 1.40
173 174 5.789643 AAAGCAACCATGAACAGTACATT 57.210 34.783 0.00 0.00 0.00 2.71
174 175 5.536161 AGAAAAGCAACCATGAACAGTACAT 59.464 36.000 0.00 0.00 0.00 2.29
176 177 5.438761 AGAAAAGCAACCATGAACAGTAC 57.561 39.130 0.00 0.00 0.00 2.73
179 180 4.685924 ACAAGAAAAGCAACCATGAACAG 58.314 39.130 0.00 0.00 0.00 3.16
180 181 4.734398 ACAAGAAAAGCAACCATGAACA 57.266 36.364 0.00 0.00 0.00 3.18
181 182 7.115378 CAGAATACAAGAAAAGCAACCATGAAC 59.885 37.037 0.00 0.00 0.00 3.18
182 183 7.147312 CAGAATACAAGAAAAGCAACCATGAA 58.853 34.615 0.00 0.00 0.00 2.57
184 185 5.346822 GCAGAATACAAGAAAAGCAACCATG 59.653 40.000 0.00 0.00 0.00 3.66
185 186 5.244626 AGCAGAATACAAGAAAAGCAACCAT 59.755 36.000 0.00 0.00 0.00 3.55
186 187 4.584325 AGCAGAATACAAGAAAAGCAACCA 59.416 37.500 0.00 0.00 0.00 3.67
188 189 7.530010 TGATAGCAGAATACAAGAAAAGCAAC 58.470 34.615 0.00 0.00 0.00 4.17
189 190 7.686438 TGATAGCAGAATACAAGAAAAGCAA 57.314 32.000 0.00 0.00 0.00 3.91
190 191 7.870509 ATGATAGCAGAATACAAGAAAAGCA 57.129 32.000 0.00 0.00 0.00 3.91
191 192 9.578439 AAAATGATAGCAGAATACAAGAAAAGC 57.422 29.630 0.00 0.00 0.00 3.51
199 200 8.786898 GGCATAGAAAAATGATAGCAGAATACA 58.213 33.333 0.00 0.00 0.00 2.29
200 201 9.007901 AGGCATAGAAAAATGATAGCAGAATAC 57.992 33.333 0.00 0.00 0.00 1.89
201 202 9.578576 AAGGCATAGAAAAATGATAGCAGAATA 57.421 29.630 0.00 0.00 0.00 1.75
202 203 8.474710 AAGGCATAGAAAAATGATAGCAGAAT 57.525 30.769 0.00 0.00 0.00 2.40
203 204 7.254898 CGAAGGCATAGAAAAATGATAGCAGAA 60.255 37.037 0.00 0.00 0.00 3.02
204 205 6.203530 CGAAGGCATAGAAAAATGATAGCAGA 59.796 38.462 0.00 0.00 0.00 4.26
206 207 5.239306 CCGAAGGCATAGAAAAATGATAGCA 59.761 40.000 0.00 0.00 46.14 3.49
207 208 5.693814 CCGAAGGCATAGAAAAATGATAGC 58.306 41.667 0.00 0.00 46.14 2.97
229 230 1.605058 TAACAGAGCAGCGGAGGACC 61.605 60.000 0.00 0.00 0.00 4.46
232 233 1.153549 GGTAACAGAGCAGCGGAGG 60.154 63.158 0.00 0.00 0.00 4.30
233 234 1.591703 TGGTAACAGAGCAGCGGAG 59.408 57.895 0.00 0.00 46.17 4.63
234 235 3.785982 TGGTAACAGAGCAGCGGA 58.214 55.556 0.00 0.00 46.17 5.54
245 246 3.926058 AGTGGGACATGGTATGGTAAC 57.074 47.619 0.00 0.00 44.52 2.50
246 247 4.938575 AAAGTGGGACATGGTATGGTAA 57.061 40.909 0.00 0.00 44.52 2.85
247 248 4.938575 AAAAGTGGGACATGGTATGGTA 57.061 40.909 0.00 0.00 44.52 3.25
249 250 3.831911 ACAAAAAGTGGGACATGGTATGG 59.168 43.478 0.00 0.00 44.52 2.74
252 253 4.066490 CGTACAAAAAGTGGGACATGGTA 58.934 43.478 0.00 0.00 44.52 3.25
253 254 2.882137 CGTACAAAAAGTGGGACATGGT 59.118 45.455 0.00 0.00 44.52 3.55
254 255 3.142951 TCGTACAAAAAGTGGGACATGG 58.857 45.455 0.00 0.00 44.52 3.66
256 257 4.457949 GGAATCGTACAAAAAGTGGGACAT 59.542 41.667 0.00 0.00 44.52 3.06
257 258 3.816523 GGAATCGTACAAAAAGTGGGACA 59.183 43.478 0.00 0.00 0.00 4.02
258 259 3.816523 TGGAATCGTACAAAAAGTGGGAC 59.183 43.478 0.00 0.00 0.00 4.46
259 260 4.088056 TGGAATCGTACAAAAAGTGGGA 57.912 40.909 0.00 0.00 0.00 4.37
260 261 4.839668 TTGGAATCGTACAAAAAGTGGG 57.160 40.909 0.00 0.00 0.00 4.61
266 267 8.564574 GCCAGAATATATTGGAATCGTACAAAA 58.435 33.333 1.78 0.00 36.55 2.44
267 268 7.095397 CGCCAGAATATATTGGAATCGTACAAA 60.095 37.037 1.78 0.00 36.55 2.83
268 269 6.367695 CGCCAGAATATATTGGAATCGTACAA 59.632 38.462 1.78 0.00 36.55 2.41
269 270 5.867174 CGCCAGAATATATTGGAATCGTACA 59.133 40.000 1.78 0.00 36.55 2.90
271 272 6.032956 ACGCCAGAATATATTGGAATCGTA 57.967 37.500 1.78 0.00 36.55 3.43
273 274 7.539712 AATACGCCAGAATATATTGGAATCG 57.460 36.000 1.78 2.12 36.55 3.34
275 276 9.905713 ACATAATACGCCAGAATATATTGGAAT 57.094 29.630 1.78 0.00 36.55 3.01
284 285 8.705134 CAAACGAATACATAATACGCCAGAATA 58.295 33.333 0.00 0.00 0.00 1.75
285 286 7.572759 CAAACGAATACATAATACGCCAGAAT 58.427 34.615 0.00 0.00 0.00 2.40
289 290 4.024725 GGCAAACGAATACATAATACGCCA 60.025 41.667 0.00 0.00 34.77 5.69
290 291 4.024725 TGGCAAACGAATACATAATACGCC 60.025 41.667 0.00 0.00 35.21 5.68
306 4626 3.428045 GGATGCAGTACAGATTGGCAAAC 60.428 47.826 3.01 0.42 38.08 2.93
307 4627 2.754552 GGATGCAGTACAGATTGGCAAA 59.245 45.455 3.01 0.00 38.08 3.68
309 4629 1.743431 CGGATGCAGTACAGATTGGCA 60.743 52.381 0.00 0.00 39.03 4.92
310 4630 0.940126 CGGATGCAGTACAGATTGGC 59.060 55.000 0.00 0.00 0.00 4.52
311 4631 2.205074 GACGGATGCAGTACAGATTGG 58.795 52.381 0.00 0.00 0.00 3.16
312 4632 2.205074 GGACGGATGCAGTACAGATTG 58.795 52.381 0.00 0.00 0.00 2.67
313 4633 1.139058 GGGACGGATGCAGTACAGATT 59.861 52.381 0.00 0.00 0.00 2.40
373 4700 2.141517 GACTCGGATGGATGATGCTTG 58.858 52.381 0.00 0.00 0.00 4.01
489 4819 3.390521 TCCCGTACCCTGCAGCAG 61.391 66.667 16.23 16.23 0.00 4.24
503 4833 1.347707 TGATGAGTTGGTGAGTGTCCC 59.652 52.381 0.00 0.00 0.00 4.46
525 4855 9.456147 TCCTTAAGCAAAATAAGCTACAACATA 57.544 29.630 0.00 0.00 42.53 2.29
545 4875 7.826744 TGTGTACATCTTTGCATACATCCTTAA 59.173 33.333 0.00 0.00 30.67 1.85
546 4876 7.334858 TGTGTACATCTTTGCATACATCCTTA 58.665 34.615 0.00 0.00 30.67 2.69
547 4877 6.179756 TGTGTACATCTTTGCATACATCCTT 58.820 36.000 0.00 0.00 30.67 3.36
565 4895 7.506328 AAGGTAAGGAAGAAAACATGTGTAC 57.494 36.000 0.00 0.00 0.00 2.90
570 4900 7.649306 CACTCAAAAGGTAAGGAAGAAAACATG 59.351 37.037 0.00 0.00 0.00 3.21
598 4928 7.221452 AGCGTTACTATTCCTTGTACATAAACG 59.779 37.037 0.00 1.70 0.00 3.60
599 4929 8.325997 CAGCGTTACTATTCCTTGTACATAAAC 58.674 37.037 0.00 0.00 0.00 2.01
608 4938 6.504398 TCAGTATCAGCGTTACTATTCCTTG 58.496 40.000 0.00 0.00 0.00 3.61
659 4989 4.582656 TGGATGGAAGATGAAAAACACGTT 59.417 37.500 0.00 0.00 0.00 3.99
687 5017 8.532977 AACATTTATATCCAACAAAACACTGC 57.467 30.769 0.00 0.00 0.00 4.40
787 5141 1.670811 CGCTGGTGTATGTTGGGATTC 59.329 52.381 0.00 0.00 0.00 2.52
824 5178 8.623030 TGTTGTTGATAAGTAGGGTTTGTTTAC 58.377 33.333 0.00 0.00 0.00 2.01
825 5179 8.749026 TGTTGTTGATAAGTAGGGTTTGTTTA 57.251 30.769 0.00 0.00 0.00 2.01
826 5180 7.648039 TGTTGTTGATAAGTAGGGTTTGTTT 57.352 32.000 0.00 0.00 0.00 2.83
837 5191 9.195411 CTTGCATTATTGTTGTTGTTGATAAGT 57.805 29.630 0.00 0.00 0.00 2.24
838 5192 9.409312 TCTTGCATTATTGTTGTTGTTGATAAG 57.591 29.630 0.00 0.00 0.00 1.73
903 5263 5.479716 TCGTTTTTCTTCTTGGTCTTCAC 57.520 39.130 0.00 0.00 0.00 3.18
923 5283 0.884704 CTTCACCAACCACCACCTCG 60.885 60.000 0.00 0.00 0.00 4.63
925 5285 1.152756 GCTTCACCAACCACCACCT 60.153 57.895 0.00 0.00 0.00 4.00
926 5286 2.200337 GGCTTCACCAACCACCACC 61.200 63.158 0.00 0.00 38.86 4.61
972 5357 2.912956 TGAGTAATGCTTTGGAGGGAGT 59.087 45.455 0.00 0.00 0.00 3.85
989 5374 1.308783 TGAGCGACTGAGCGATGAGT 61.309 55.000 0.00 0.00 43.00 3.41
1014 5399 1.091771 CGATGGTGCTGGTGGATGTC 61.092 60.000 0.00 0.00 0.00 3.06
1025 5420 2.526120 GCCGAGCTAACGATGGTGC 61.526 63.158 0.00 0.00 35.09 5.01
1033 5428 0.108615 TTCTCTGCAGCCGAGCTAAC 60.109 55.000 9.47 0.00 36.40 2.34
1127 5552 1.710339 GTTCTTGAGCGTCATCGGC 59.290 57.895 0.00 0.00 37.56 5.54
1169 5594 2.203922 TCAGCAGCCACCAGGGTA 60.204 61.111 0.00 0.00 45.83 3.69
1220 5645 0.541063 TCACTGTGGACGGGAGCTTA 60.541 55.000 8.11 0.00 0.00 3.09
1304 5729 3.402681 CCCTCCTCCACGGTGCAT 61.403 66.667 1.68 0.00 0.00 3.96
1311 5736 2.671682 GTCCTTGCCCTCCTCCAC 59.328 66.667 0.00 0.00 0.00 4.02
1394 5819 3.453070 GAGAGGCGCCATGGAGACC 62.453 68.421 31.54 17.89 0.00 3.85
1409 5834 0.249197 CCTGATTCATGAGCGCGAGA 60.249 55.000 12.10 0.00 0.00 4.04
1526 5960 4.352600 AGAAAAAGAATCATGCAGAGCG 57.647 40.909 0.00 0.00 0.00 5.03
1565 6078 7.830099 TTAGTACTACTATTTACCTCCTGCC 57.170 40.000 0.91 0.00 29.64 4.85
1618 6518 9.964354 CACCATCCAATTATCCAAAGAGATATA 57.036 33.333 0.00 0.00 0.00 0.86
1642 6542 2.289257 GGTGTACTCTAACCCCACACAC 60.289 54.545 5.62 0.00 40.95 3.82
1715 6638 7.397192 AGCACTTATCATTTGGGTGTAAGAAAT 59.603 33.333 0.00 0.00 0.00 2.17
1744 6667 7.432869 GGCATGTGAATATAGCATTTTTGGTA 58.567 34.615 0.00 0.00 0.00 3.25
1745 6668 6.282930 GGCATGTGAATATAGCATTTTTGGT 58.717 36.000 0.00 0.00 0.00 3.67
1746 6669 5.697633 GGGCATGTGAATATAGCATTTTTGG 59.302 40.000 0.00 0.00 0.00 3.28
1747 6670 6.282167 TGGGCATGTGAATATAGCATTTTTG 58.718 36.000 0.00 0.00 0.00 2.44
1748 6671 6.482898 TGGGCATGTGAATATAGCATTTTT 57.517 33.333 0.00 0.00 0.00 1.94
1749 6672 6.675413 ATGGGCATGTGAATATAGCATTTT 57.325 33.333 0.00 0.00 0.00 1.82
1750 6673 6.675413 AATGGGCATGTGAATATAGCATTT 57.325 33.333 0.00 0.00 0.00 2.32
1751 6674 6.720748 TGTAATGGGCATGTGAATATAGCATT 59.279 34.615 0.00 0.00 0.00 3.56
1752 6675 6.247676 TGTAATGGGCATGTGAATATAGCAT 58.752 36.000 0.00 0.00 0.00 3.79
1753 6676 5.629125 TGTAATGGGCATGTGAATATAGCA 58.371 37.500 0.00 0.00 0.00 3.49
1754 6677 6.558009 CATGTAATGGGCATGTGAATATAGC 58.442 40.000 0.00 0.00 41.79 2.97
1755 6678 6.151480 TGCATGTAATGGGCATGTGAATATAG 59.849 38.462 7.06 0.00 46.86 1.31
1756 6679 6.008960 TGCATGTAATGGGCATGTGAATATA 58.991 36.000 7.06 0.00 46.86 0.86
1757 6680 4.833938 TGCATGTAATGGGCATGTGAATAT 59.166 37.500 7.06 0.00 46.86 1.28
1758 6681 4.213513 TGCATGTAATGGGCATGTGAATA 58.786 39.130 7.06 0.00 46.86 1.75
1759 6682 3.032459 TGCATGTAATGGGCATGTGAAT 58.968 40.909 7.06 0.00 46.86 2.57
1760 6683 2.427812 CTGCATGTAATGGGCATGTGAA 59.572 45.455 7.06 0.00 46.86 3.18
1761 6684 2.025898 CTGCATGTAATGGGCATGTGA 58.974 47.619 7.06 0.00 46.86 3.58
1762 6685 2.025898 TCTGCATGTAATGGGCATGTG 58.974 47.619 7.06 2.06 46.86 3.21
1763 6686 2.440517 TCTGCATGTAATGGGCATGT 57.559 45.000 7.06 0.00 46.86 3.21
1764 6687 4.614306 CGTAATCTGCATGTAATGGGCATG 60.614 45.833 0.00 0.00 46.86 4.06
1765 6688 3.503363 CGTAATCTGCATGTAATGGGCAT 59.497 43.478 0.00 0.00 46.86 4.40
1766 6689 2.877786 CGTAATCTGCATGTAATGGGCA 59.122 45.455 0.00 0.00 46.86 5.36
1767 6690 2.226437 CCGTAATCTGCATGTAATGGGC 59.774 50.000 0.00 0.00 46.86 5.36
1768 6691 2.813754 CCCGTAATCTGCATGTAATGGG 59.186 50.000 0.00 0.00 46.86 4.00
1769 6692 2.813754 CCCCGTAATCTGCATGTAATGG 59.186 50.000 0.00 0.00 46.86 3.16
1771 6694 2.441750 ACCCCCGTAATCTGCATGTAAT 59.558 45.455 0.00 0.00 0.00 1.89
1772 6695 1.841277 ACCCCCGTAATCTGCATGTAA 59.159 47.619 0.00 0.00 0.00 2.41
1773 6696 1.140052 CACCCCCGTAATCTGCATGTA 59.860 52.381 0.00 0.00 0.00 2.29
1774 6697 0.107214 CACCCCCGTAATCTGCATGT 60.107 55.000 0.00 0.00 0.00 3.21
1775 6698 0.107214 ACACCCCCGTAATCTGCATG 60.107 55.000 0.00 0.00 0.00 4.06
1776 6699 0.623723 AACACCCCCGTAATCTGCAT 59.376 50.000 0.00 0.00 0.00 3.96
1777 6700 0.402504 AAACACCCCCGTAATCTGCA 59.597 50.000 0.00 0.00 0.00 4.41
1778 6701 0.808755 CAAACACCCCCGTAATCTGC 59.191 55.000 0.00 0.00 0.00 4.26
1779 6702 1.271707 ACCAAACACCCCCGTAATCTG 60.272 52.381 0.00 0.00 0.00 2.90
1780 6703 1.069775 ACCAAACACCCCCGTAATCT 58.930 50.000 0.00 0.00 0.00 2.40
1781 6704 1.814394 GAACCAAACACCCCCGTAATC 59.186 52.381 0.00 0.00 0.00 1.75
1782 6705 1.548355 GGAACCAAACACCCCCGTAAT 60.548 52.381 0.00 0.00 0.00 1.89
1783 6706 0.178995 GGAACCAAACACCCCCGTAA 60.179 55.000 0.00 0.00 0.00 3.18
1784 6707 1.351080 TGGAACCAAACACCCCCGTA 61.351 55.000 0.00 0.00 0.00 4.02
1785 6708 2.196502 GGAACCAAACACCCCCGT 59.803 61.111 0.00 0.00 0.00 5.28
1786 6709 1.901464 CTGGAACCAAACACCCCCG 60.901 63.158 0.00 0.00 0.00 5.73
1787 6710 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
1788 6711 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
1789 6712 0.114364 ATCCCTGGAACCAAACACCC 59.886 55.000 0.00 0.00 0.00 4.61
1790 6713 2.009681 AATCCCTGGAACCAAACACC 57.990 50.000 0.00 0.00 0.00 4.16
1791 6714 4.415881 AAAAATCCCTGGAACCAAACAC 57.584 40.909 0.00 0.00 0.00 3.32
1829 6752 5.454613 CCTGTTTGGTTTGCTAGGGATTTTT 60.455 40.000 0.00 0.00 0.00 1.94
1830 6753 4.040339 CCTGTTTGGTTTGCTAGGGATTTT 59.960 41.667 0.00 0.00 0.00 1.82
1831 6754 3.578282 CCTGTTTGGTTTGCTAGGGATTT 59.422 43.478 0.00 0.00 0.00 2.17
1832 6755 3.165071 CCTGTTTGGTTTGCTAGGGATT 58.835 45.455 0.00 0.00 0.00 3.01
1833 6756 2.378547 TCCTGTTTGGTTTGCTAGGGAT 59.621 45.455 0.00 0.00 37.07 3.85
1834 6757 1.777878 TCCTGTTTGGTTTGCTAGGGA 59.222 47.619 0.00 0.00 37.07 4.20
1835 6758 2.286365 TCCTGTTTGGTTTGCTAGGG 57.714 50.000 0.00 0.00 37.07 3.53
1836 6759 2.493278 CCATCCTGTTTGGTTTGCTAGG 59.507 50.000 0.00 0.00 37.07 3.02
1837 6760 2.493278 CCCATCCTGTTTGGTTTGCTAG 59.507 50.000 0.00 0.00 37.07 3.42
1838 6761 2.109128 TCCCATCCTGTTTGGTTTGCTA 59.891 45.455 0.00 0.00 37.07 3.49
1839 6762 1.133199 TCCCATCCTGTTTGGTTTGCT 60.133 47.619 0.00 0.00 37.07 3.91
1840 6763 1.000843 GTCCCATCCTGTTTGGTTTGC 59.999 52.381 0.00 0.00 37.07 3.68
1841 6764 2.597455 AGTCCCATCCTGTTTGGTTTG 58.403 47.619 0.00 0.00 37.07 2.93
1842 6765 3.328535 AAGTCCCATCCTGTTTGGTTT 57.671 42.857 0.00 0.00 37.07 3.27
1843 6766 3.328535 AAAGTCCCATCCTGTTTGGTT 57.671 42.857 0.00 0.00 37.07 3.67
1844 6767 3.328535 AAAAGTCCCATCCTGTTTGGT 57.671 42.857 0.00 0.00 37.07 3.67
1862 6785 7.826744 AGAACTTTTAGCAAAATGTCCCAAAAA 59.173 29.630 0.00 0.00 33.24 1.94
1863 6786 7.334858 AGAACTTTTAGCAAAATGTCCCAAAA 58.665 30.769 0.00 0.00 33.24 2.44
1864 6787 6.883744 AGAACTTTTAGCAAAATGTCCCAAA 58.116 32.000 0.00 0.00 33.24 3.28
1865 6788 6.478512 AGAACTTTTAGCAAAATGTCCCAA 57.521 33.333 0.00 0.00 33.24 4.12
1866 6789 6.478512 AAGAACTTTTAGCAAAATGTCCCA 57.521 33.333 0.00 0.00 33.24 4.37
1867 6790 7.882179 TCTAAGAACTTTTAGCAAAATGTCCC 58.118 34.615 0.00 0.00 33.24 4.46
1868 6791 9.399403 CTTCTAAGAACTTTTAGCAAAATGTCC 57.601 33.333 0.00 0.00 33.24 4.02
1869 6792 8.906693 GCTTCTAAGAACTTTTAGCAAAATGTC 58.093 33.333 0.00 0.00 33.24 3.06
1870 6793 8.413229 TGCTTCTAAGAACTTTTAGCAAAATGT 58.587 29.630 12.09 0.00 35.20 2.71
1871 6794 8.694394 GTGCTTCTAAGAACTTTTAGCAAAATG 58.306 33.333 14.46 0.00 31.51 2.32
1872 6795 7.867909 GGTGCTTCTAAGAACTTTTAGCAAAAT 59.132 33.333 14.46 0.00 34.81 1.82
1873 6796 7.068226 AGGTGCTTCTAAGAACTTTTAGCAAAA 59.932 33.333 14.46 0.00 34.81 2.44
1874 6797 6.546034 AGGTGCTTCTAAGAACTTTTAGCAAA 59.454 34.615 14.46 0.00 34.81 3.68
1875 6798 6.062095 AGGTGCTTCTAAGAACTTTTAGCAA 58.938 36.000 14.46 3.51 34.81 3.91
1876 6799 5.621193 AGGTGCTTCTAAGAACTTTTAGCA 58.379 37.500 0.94 11.11 34.81 3.49
1877 6800 5.122554 GGAGGTGCTTCTAAGAACTTTTAGC 59.877 44.000 0.94 0.00 34.81 3.09
1878 6801 6.468543 AGGAGGTGCTTCTAAGAACTTTTAG 58.531 40.000 0.94 0.00 34.81 1.85
1879 6802 6.435292 AGGAGGTGCTTCTAAGAACTTTTA 57.565 37.500 0.94 0.00 34.81 1.52
1880 6803 5.311844 AGGAGGTGCTTCTAAGAACTTTT 57.688 39.130 0.94 0.00 34.81 2.27
1881 6804 4.984146 AGGAGGTGCTTCTAAGAACTTT 57.016 40.909 0.94 0.00 34.81 2.66
1882 6805 4.348168 TCAAGGAGGTGCTTCTAAGAACTT 59.652 41.667 0.94 0.00 34.81 2.66
1883 6806 3.904339 TCAAGGAGGTGCTTCTAAGAACT 59.096 43.478 0.94 0.00 34.81 3.01
1884 6807 4.021016 TCTCAAGGAGGTGCTTCTAAGAAC 60.021 45.833 0.00 0.00 33.56 3.01
1885 6808 4.160329 TCTCAAGGAGGTGCTTCTAAGAA 58.840 43.478 0.00 0.00 0.00 2.52
1886 6809 3.766591 CTCTCAAGGAGGTGCTTCTAAGA 59.233 47.826 0.00 0.00 38.35 2.10
1887 6810 3.513515 ACTCTCAAGGAGGTGCTTCTAAG 59.486 47.826 0.00 0.00 45.83 2.18
1888 6811 3.511477 ACTCTCAAGGAGGTGCTTCTAA 58.489 45.455 0.00 0.00 45.83 2.10
1892 6815 2.022718 AGACTCTCAAGGAGGTGCTT 57.977 50.000 0.00 0.00 45.83 3.91
2314 7237 4.759205 GCCCGCCCACCTGGAAAT 62.759 66.667 0.00 0.00 37.39 2.17
2340 7263 0.926293 TTCTGATTGGGCTAAGGGGG 59.074 55.000 0.00 0.00 0.00 5.40
2341 7264 2.024941 AGTTTCTGATTGGGCTAAGGGG 60.025 50.000 0.00 0.00 0.00 4.79
2342 7265 3.019564 CAGTTTCTGATTGGGCTAAGGG 58.980 50.000 0.00 0.00 32.44 3.95
2343 7266 2.424956 GCAGTTTCTGATTGGGCTAAGG 59.575 50.000 0.66 0.00 32.44 2.69
2344 7267 2.424956 GGCAGTTTCTGATTGGGCTAAG 59.575 50.000 0.66 0.00 32.44 2.18
2345 7268 2.224992 TGGCAGTTTCTGATTGGGCTAA 60.225 45.455 0.66 0.00 32.44 3.09
2346 7269 1.354031 TGGCAGTTTCTGATTGGGCTA 59.646 47.619 0.66 0.00 32.44 3.93
2347 7270 0.112995 TGGCAGTTTCTGATTGGGCT 59.887 50.000 0.66 0.00 32.44 5.19
2348 7271 0.968405 TTGGCAGTTTCTGATTGGGC 59.032 50.000 0.66 0.00 32.44 5.36
2349 7272 2.242043 ACTTGGCAGTTTCTGATTGGG 58.758 47.619 0.66 0.00 32.44 4.12
2350 7273 3.553508 CCAACTTGGCAGTTTCTGATTGG 60.554 47.826 0.00 0.00 40.66 3.16
2351 7274 3.318839 TCCAACTTGGCAGTTTCTGATTG 59.681 43.478 2.52 0.00 40.66 2.67
2352 7275 3.565307 TCCAACTTGGCAGTTTCTGATT 58.435 40.909 2.52 0.00 40.66 2.57
2353 7276 3.228188 TCCAACTTGGCAGTTTCTGAT 57.772 42.857 2.52 0.00 40.66 2.90
2354 7277 2.727123 TCCAACTTGGCAGTTTCTGA 57.273 45.000 2.52 0.00 40.66 3.27
2355 7278 3.318839 TGAATCCAACTTGGCAGTTTCTG 59.681 43.478 2.52 0.00 40.66 3.02
2356 7279 3.319122 GTGAATCCAACTTGGCAGTTTCT 59.681 43.478 2.52 0.00 40.66 2.52
2357 7280 3.319122 AGTGAATCCAACTTGGCAGTTTC 59.681 43.478 2.52 4.76 40.66 2.78
2358 7281 3.299503 AGTGAATCCAACTTGGCAGTTT 58.700 40.909 2.52 0.00 40.66 2.66
2359 7282 2.887152 GAGTGAATCCAACTTGGCAGTT 59.113 45.455 2.52 0.00 44.72 3.16
2360 7283 2.508526 GAGTGAATCCAACTTGGCAGT 58.491 47.619 2.52 0.00 37.47 4.40
2371 7294 2.037381 GGGGAGATTACGGAGTGAATCC 59.963 54.545 0.00 0.00 45.73 3.01
2372 7295 2.288273 CGGGGAGATTACGGAGTGAATC 60.288 54.545 0.00 0.00 45.73 2.52
2373 7296 1.687123 CGGGGAGATTACGGAGTGAAT 59.313 52.381 0.00 0.00 45.73 2.57
2374 7297 1.108776 CGGGGAGATTACGGAGTGAA 58.891 55.000 0.00 0.00 45.73 3.18
2375 7298 0.033796 ACGGGGAGATTACGGAGTGA 60.034 55.000 0.00 0.00 45.73 3.41
2376 7299 1.683943 TACGGGGAGATTACGGAGTG 58.316 55.000 0.00 0.00 45.73 3.51
2378 7301 2.029290 CCATTACGGGGAGATTACGGAG 60.029 54.545 0.00 0.00 0.00 4.63
2379 7302 1.965643 CCATTACGGGGAGATTACGGA 59.034 52.381 0.00 0.00 0.00 4.69
2380 7303 2.450609 CCATTACGGGGAGATTACGG 57.549 55.000 0.00 0.00 0.00 4.02
2391 7314 1.202927 AGATTCATGGGCCCATTACGG 60.203 52.381 35.69 23.22 33.90 4.02
2392 7315 2.276732 AGATTCATGGGCCCATTACG 57.723 50.000 35.69 23.60 33.90 3.18
2393 7316 3.084786 GCTAGATTCATGGGCCCATTAC 58.915 50.000 35.69 23.49 33.90 1.89
2394 7317 2.715880 TGCTAGATTCATGGGCCCATTA 59.284 45.455 35.69 25.45 33.90 1.90
2395 7318 1.500303 TGCTAGATTCATGGGCCCATT 59.500 47.619 35.69 21.61 33.90 3.16
2396 7319 1.151760 TGCTAGATTCATGGGCCCAT 58.848 50.000 32.75 32.75 37.08 4.00
2397 7320 1.151760 ATGCTAGATTCATGGGCCCA 58.848 50.000 30.92 30.92 0.00 5.36
2398 7321 2.299326 AATGCTAGATTCATGGGCCC 57.701 50.000 17.59 17.59 0.00 5.80
2399 7322 4.677673 AAAAATGCTAGATTCATGGGCC 57.322 40.909 0.00 0.00 0.00 5.80
2417 7340 9.685828 GAATGGTATTACTTTGTGCTACAAAAA 57.314 29.630 13.10 7.97 46.15 1.94
2418 7341 9.073475 AGAATGGTATTACTTTGTGCTACAAAA 57.927 29.630 13.10 2.94 46.15 2.44
2419 7342 8.511321 CAGAATGGTATTACTTTGTGCTACAAA 58.489 33.333 12.00 12.00 44.91 2.83
2420 7343 7.880713 TCAGAATGGTATTACTTTGTGCTACAA 59.119 33.333 0.00 0.00 34.27 2.41
2421 7344 7.333423 GTCAGAATGGTATTACTTTGTGCTACA 59.667 37.037 0.00 0.00 36.16 2.74
2422 7345 7.333423 TGTCAGAATGGTATTACTTTGTGCTAC 59.667 37.037 0.00 0.00 36.16 3.58
2423 7346 7.390823 TGTCAGAATGGTATTACTTTGTGCTA 58.609 34.615 0.00 0.00 36.16 3.49
2424 7347 6.237901 TGTCAGAATGGTATTACTTTGTGCT 58.762 36.000 0.00 0.00 36.16 4.40
2533 7463 5.105351 GCTTTAGTTACCCAAAGATGGCAAT 60.105 40.000 10.13 0.00 46.09 3.56
2544 7474 2.307392 TGATGGCAGCTTTAGTTACCCA 59.693 45.455 3.69 0.00 0.00 4.51
2600 7530 3.689347 TGCTTGCCACATCTTCTACAAT 58.311 40.909 0.00 0.00 0.00 2.71
2604 7534 1.742761 GCTGCTTGCCACATCTTCTA 58.257 50.000 0.00 0.00 35.15 2.10
2668 7600 0.678048 GGAGTCCTTCATGCCACACC 60.678 60.000 0.41 0.00 0.00 4.16
2682 7614 2.206576 AAAATGTCAGGGCTGGAGTC 57.793 50.000 0.00 0.00 0.00 3.36
2746 7678 0.250727 TTCGGAGGGCAAGTTTCAGG 60.251 55.000 0.00 0.00 0.00 3.86
2747 7679 1.604604 TTTCGGAGGGCAAGTTTCAG 58.395 50.000 0.00 0.00 0.00 3.02
2748 7680 1.953686 CTTTTCGGAGGGCAAGTTTCA 59.046 47.619 0.00 0.00 0.00 2.69
2749 7681 2.227194 TCTTTTCGGAGGGCAAGTTTC 58.773 47.619 0.00 0.00 0.00 2.78
2759 7693 2.813754 TCATGGCAACTTCTTTTCGGAG 59.186 45.455 0.00 0.00 37.61 4.63
2805 7739 8.524487 TCATTTTTATGCCAAATTTAGTACCGT 58.476 29.630 0.00 0.00 0.00 4.83
2809 7743 9.743057 CCGATCATTTTTATGCCAAATTTAGTA 57.257 29.630 0.00 0.00 0.00 1.82
2884 7819 0.817634 CCACAACCCGTCAGCAGAAA 60.818 55.000 0.00 0.00 0.00 2.52
2917 7852 2.463752 AGTTAAGTCCCGGATACTGCA 58.536 47.619 0.73 0.00 0.00 4.41
2956 7892 3.010027 TGCCAGTAACTGAATCAATGGGA 59.990 43.478 0.00 0.00 32.44 4.37
3005 7942 6.569780 ACAAACACAATTTACTCCAAGAACC 58.430 36.000 0.00 0.00 0.00 3.62
3099 8045 0.327924 ACTTGAATGCCGACATCCCA 59.672 50.000 0.00 0.00 34.62 4.37
3115 8061 0.180406 GGGTCCGTGCCATGATACTT 59.820 55.000 0.00 0.00 0.00 2.24
3323 8269 0.753479 AGCCTCGGAGATGACGTGAT 60.753 55.000 6.58 0.00 33.89 3.06
3324 8270 1.377366 GAGCCTCGGAGATGACGTGA 61.377 60.000 6.58 0.00 33.89 4.35
3367 8319 3.524095 TTGGAACATGTCTCCACCAAT 57.476 42.857 21.86 0.00 42.76 3.16
3372 8324 4.766891 GGAATCTTTTGGAACATGTCTCCA 59.233 41.667 19.56 19.56 41.33 3.86
3432 8387 0.035317 AATGCTCGTTGCTCCAGTCA 59.965 50.000 5.00 0.00 43.37 3.41
3442 8397 1.370414 GCGTTGCACAATGCTCGTT 60.370 52.632 18.08 0.00 46.74 3.85
3518 8473 2.438434 GGTTCACCGGCAGGATGG 60.438 66.667 10.86 0.00 41.02 3.51
3573 8528 0.795085 GCGCTAGCATGATCATGTCC 59.205 55.000 31.09 18.58 44.35 4.02
3699 8654 4.872124 TGCGTCTACTTAGTGAACTCGATA 59.128 41.667 0.00 0.00 0.00 2.92
3719 8674 1.018752 TCGGTGGACATTGTCATGCG 61.019 55.000 18.09 5.11 33.68 4.73
3729 8691 2.107366 TGAGCAAGATATCGGTGGACA 58.893 47.619 10.36 1.11 0.00 4.02
3991 8992 2.247311 AAATTCATGAGTCGTTGCGC 57.753 45.000 0.00 0.00 0.00 6.09
4030 9031 9.507329 CATTGCCCTATTAGTATAACATCAAGT 57.493 33.333 0.00 0.00 0.00 3.16
4031 9032 8.950210 CCATTGCCCTATTAGTATAACATCAAG 58.050 37.037 0.00 0.00 0.00 3.02
4049 9050 2.054453 GCCTCCACTTCCATTGCCC 61.054 63.158 0.00 0.00 0.00 5.36
4054 9055 1.707427 AGAAGTTGCCTCCACTTCCAT 59.293 47.619 8.80 0.00 40.32 3.41
4069 9075 5.996513 CCTTGCTATGATTGCATCTAGAAGT 59.003 40.000 1.85 0.00 40.34 3.01
4134 9140 6.802608 ACAGAATGAAGAATAATGCATGGTG 58.197 36.000 0.00 0.00 39.69 4.17
4175 9181 2.699954 AGTGTATTGCTTGGTTCGAGG 58.300 47.619 0.00 0.00 0.00 4.63
4237 9243 2.269520 TAGTGGCGGCGGTCTAGGTA 62.270 60.000 9.78 0.00 0.00 3.08
4259 9265 3.003763 GGGCACCGAGAGAGGGTT 61.004 66.667 0.00 0.00 40.86 4.11
4295 9301 0.238289 CCACTACCGTTGCAAAGCAG 59.762 55.000 0.00 5.71 40.61 4.24
4321 9327 1.202604 CCACACCACCTTCGTAAGTGT 60.203 52.381 0.00 0.00 38.53 3.55
4332 9338 2.750350 CAGGTCTCCCACACCACC 59.250 66.667 0.00 0.00 36.23 4.61
4349 9359 3.091545 TGAAAGATCCAAAGCATCCACC 58.908 45.455 0.00 0.00 0.00 4.61
4357 9367 0.447801 CGCCCGTGAAAGATCCAAAG 59.552 55.000 0.00 0.00 0.00 2.77
4383 9393 0.813610 CAGCGAAAGTCACCACCACA 60.814 55.000 0.00 0.00 0.00 4.17
4421 9434 1.474077 CTAAACTGCCAATGCCACCTC 59.526 52.381 0.00 0.00 36.33 3.85
4427 9440 1.541147 TGTCTGCTAAACTGCCAATGC 59.459 47.619 0.00 0.00 38.26 3.56
4446 9459 3.197790 CAGCCAATCCTCCGCGTG 61.198 66.667 4.92 0.00 0.00 5.34
4474 9487 1.278238 CAAATCGAGTAGCGTCCACC 58.722 55.000 0.00 0.00 41.80 4.61
4484 9497 1.736645 CCGACACCGCAAATCGAGT 60.737 57.895 0.00 0.00 41.67 4.18
4489 9502 2.359478 GGACCCGACACCGCAAAT 60.359 61.111 0.00 0.00 0.00 2.32
4505 9518 3.198068 CGAGTAGTCCACATCCAATTGG 58.802 50.000 19.08 19.08 0.00 3.16
4508 9521 2.467880 ACCGAGTAGTCCACATCCAAT 58.532 47.619 0.00 0.00 0.00 3.16
4509 9522 1.933021 ACCGAGTAGTCCACATCCAA 58.067 50.000 0.00 0.00 0.00 3.53
4527 9540 4.509970 GGGCCACAATAAAACTTGTCAAAC 59.490 41.667 4.39 0.00 37.25 2.93
4528 9541 4.162320 TGGGCCACAATAAAACTTGTCAAA 59.838 37.500 0.00 0.00 37.25 2.69
4530 9543 3.300388 TGGGCCACAATAAAACTTGTCA 58.700 40.909 0.00 0.00 37.25 3.58
4531 9544 4.220602 AGATGGGCCACAATAAAACTTGTC 59.779 41.667 9.28 0.00 37.25 3.18
4532 9545 4.159557 AGATGGGCCACAATAAAACTTGT 58.840 39.130 9.28 0.00 39.91 3.16
4536 9549 4.706962 AGAAGAGATGGGCCACAATAAAAC 59.293 41.667 9.28 0.00 0.00 2.43
4537 9550 4.934356 AGAAGAGATGGGCCACAATAAAA 58.066 39.130 9.28 0.00 0.00 1.52
4553 9572 3.009473 TGGACCCAATTCCTCAAGAAGAG 59.991 47.826 0.00 0.00 44.31 2.85
4572 9591 5.804944 ATGTCATTGTTGTCCAATTTGGA 57.195 34.783 14.24 14.24 45.98 3.53
4575 9594 7.872483 GGAAGTAATGTCATTGTTGTCCAATTT 59.128 33.333 8.39 0.00 41.93 1.82
4577 9596 6.349280 CGGAAGTAATGTCATTGTTGTCCAAT 60.349 38.462 8.39 0.00 44.73 3.16
4579 9598 4.454161 CGGAAGTAATGTCATTGTTGTCCA 59.546 41.667 8.39 0.00 0.00 4.02
4581 9600 5.607119 ACGGAAGTAATGTCATTGTTGTC 57.393 39.130 8.39 1.01 46.88 3.18
4627 9987 1.999735 CACGAGGTGCAACGTTGATAT 59.000 47.619 31.62 13.42 38.36 1.63
4628 9988 1.424403 CACGAGGTGCAACGTTGATA 58.576 50.000 31.62 16.33 38.36 2.15
4652 10012 2.686816 CCGCCGCCAAAGTTACCAG 61.687 63.158 0.00 0.00 0.00 4.00
4680 10040 0.692476 AACTAGCAGCCACATCCACA 59.308 50.000 0.00 0.00 0.00 4.17
4686 10046 1.600636 GCCACAACTAGCAGCCACA 60.601 57.895 0.00 0.00 0.00 4.17
4794 10157 3.141488 CTCCCGGCACTCGTAGCT 61.141 66.667 0.00 0.00 37.11 3.32
4872 10235 2.103771 CACCATCTTCCGACTCCATCAT 59.896 50.000 0.00 0.00 0.00 2.45
4883 10246 2.040544 CCGCACCACACCATCTTCC 61.041 63.158 0.00 0.00 0.00 3.46
4885 10248 1.600636 CACCGCACCACACCATCTT 60.601 57.895 0.00 0.00 0.00 2.40
4915 10278 0.872388 GCTTTCGTCCAAATCACCGT 59.128 50.000 0.00 0.00 0.00 4.83
4918 10281 2.293399 ACAAGGCTTTCGTCCAAATCAC 59.707 45.455 0.00 0.00 0.00 3.06
4943 10306 2.811431 CGTCATTGGTGCTAACAAGGAA 59.189 45.455 3.47 0.00 39.86 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.