Multiple sequence alignment - TraesCS6A01G004800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G004800 chr6A 100.000 3273 0 0 444 3716 1900259 1903531 0.000000e+00 6045.0
1 TraesCS6A01G004800 chr6A 100.000 128 0 0 1 128 1899816 1899943 1.730000e-58 237.0
2 TraesCS6A01G004800 chr6A 94.737 76 4 0 2753 2828 1902459 1902534 6.520000e-23 119.0
3 TraesCS6A01G004800 chr6A 94.737 76 4 0 2644 2719 1902568 1902643 6.520000e-23 119.0
4 TraesCS6A01G004800 chr6B 89.454 1631 113 33 626 2230 6028476 6030073 0.000000e+00 2004.0
5 TraesCS6A01G004800 chr6B 84.447 868 87 20 462 1305 6044050 6044893 0.000000e+00 811.0
6 TraesCS6A01G004800 chr6B 89.333 600 44 7 2753 3341 6030405 6030995 0.000000e+00 736.0
7 TraesCS6A01G004800 chr6B 91.518 448 24 6 2324 2757 6030072 6030519 4.110000e-169 604.0
8 TraesCS6A01G004800 chr6B 92.969 256 18 0 1975 2230 6045082 6045337 1.260000e-99 374.0
9 TraesCS6A01G004800 chr6B 87.687 268 19 10 3378 3641 6030993 6031250 2.170000e-77 300.0
10 TraesCS6A01G004800 chr6B 88.119 202 12 3 578 779 6044895 6045084 2.890000e-56 230.0
11 TraesCS6A01G004800 chr6B 86.408 103 3 3 2354 2445 6045354 6045456 6.570000e-18 102.0
12 TraesCS6A01G004800 chr6D 94.431 1239 61 1 1000 2230 2919698 2920936 0.000000e+00 1899.0
13 TraesCS6A01G004800 chr6D 90.411 511 41 3 2831 3341 2921404 2921906 0.000000e+00 665.0
14 TraesCS6A01G004800 chr6D 92.494 413 23 5 2324 2728 2920935 2921347 5.350000e-163 584.0
15 TraesCS6A01G004800 chr6D 87.941 340 37 4 3378 3716 2921904 2922240 7.480000e-107 398.0
16 TraesCS6A01G004800 chr6D 92.140 229 16 1 639 867 2919240 2919466 4.630000e-84 322.0
17 TraesCS6A01G004800 chr6D 94.304 158 4 1 850 1002 2919479 2919636 1.730000e-58 237.0
18 TraesCS6A01G004800 chr6D 89.796 98 10 0 2228 2325 413048057 413047960 3.900000e-25 126.0
19 TraesCS6A01G004800 chr5D 85.119 168 22 3 444 610 483376138 483376303 6.380000e-38 169.0
20 TraesCS6A01G004800 chr5A 86.452 155 18 3 466 620 604314587 604314738 2.300000e-37 167.0
21 TraesCS6A01G004800 chr2A 91.837 98 6 2 2229 2325 128720669 128720573 6.470000e-28 135.0
22 TraesCS6A01G004800 chr7A 90.816 98 7 2 2229 2325 558749294 558749198 3.010000e-26 130.0
23 TraesCS6A01G004800 chr7A 90.816 98 7 2 2229 2325 566097233 566097329 3.010000e-26 130.0
24 TraesCS6A01G004800 chr5B 90.196 102 7 3 2229 2328 147461729 147461829 3.010000e-26 130.0
25 TraesCS6A01G004800 chr3D 90.099 101 8 2 2227 2326 582796861 582796960 3.010000e-26 130.0
26 TraesCS6A01G004800 chr3A 90.816 98 7 2 2229 2325 83768565 83768661 3.010000e-26 130.0
27 TraesCS6A01G004800 chr3A 86.364 66 8 1 494 559 439910668 439910604 1.850000e-08 71.3
28 TraesCS6A01G004800 chr1B 81.935 155 27 1 466 620 495972442 495972289 3.010000e-26 130.0
29 TraesCS6A01G004800 chr1B 81.290 155 17 3 466 620 665823871 665824013 8.430000e-22 115.0
30 TraesCS6A01G004800 chr7B 89.320 103 8 3 2229 2330 705887389 705887489 3.900000e-25 126.0
31 TraesCS6A01G004800 chr1A 89.216 102 8 3 2225 2325 324495729 324495828 1.400000e-24 124.0
32 TraesCS6A01G004800 chr4B 84.158 101 8 1 3 95 46974926 46974826 1.420000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G004800 chr6A 1899816 1903531 3715 False 1630.000000 6045 97.36850 1 3716 4 chr6A.!!$F1 3715
1 TraesCS6A01G004800 chr6B 6028476 6031250 2774 False 911.000000 2004 89.49800 626 3641 4 chr6B.!!$F1 3015
2 TraesCS6A01G004800 chr6B 6044050 6045456 1406 False 379.250000 811 87.98575 462 2445 4 chr6B.!!$F2 1983
3 TraesCS6A01G004800 chr6D 2919240 2922240 3000 False 684.166667 1899 91.95350 639 3716 6 chr6D.!!$F1 3077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.105964 TAATGGAGATGGGTTCGCGG 59.894 55.0 6.13 0.0 0.00 6.46 F
1103 1228 0.250513 GAACAAGGATCACCGGAGCT 59.749 55.0 9.46 0.0 41.83 4.09 F
2494 2709 0.321919 GAACATGGCTGACCTGCTCA 60.322 55.0 0.00 0.0 36.63 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1853 0.454196 GAAGGTGAGAGGCTCGAGAC 59.546 60.0 18.75 15.26 32.35 3.36 R
2563 2778 0.103208 GGTGCATTCTCGTCCTCGAT 59.897 55.0 0.00 0.00 45.21 3.59 R
3367 3634 0.885196 GCCGGTCAATTTTAGCACCA 59.115 50.0 1.90 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.124088 GTGTGATACATGTGAGGGATTTTC 57.876 41.667 9.11 0.00 0.00 2.29
24 25 5.066505 GTGTGATACATGTGAGGGATTTTCC 59.933 44.000 9.11 0.00 35.23 3.13
25 26 5.192927 GTGATACATGTGAGGGATTTTCCA 58.807 41.667 9.11 0.00 38.64 3.53
26 27 5.652014 GTGATACATGTGAGGGATTTTCCAA 59.348 40.000 9.11 0.00 38.64 3.53
27 28 6.152661 GTGATACATGTGAGGGATTTTCCAAA 59.847 38.462 9.11 0.00 38.64 3.28
28 29 6.896860 TGATACATGTGAGGGATTTTCCAAAT 59.103 34.615 9.11 0.00 38.64 2.32
29 30 5.410355 ACATGTGAGGGATTTTCCAAATG 57.590 39.130 0.00 0.00 38.64 2.32
30 31 3.959535 TGTGAGGGATTTTCCAAATGC 57.040 42.857 0.00 0.00 38.64 3.56
31 32 2.566724 TGTGAGGGATTTTCCAAATGCC 59.433 45.455 10.86 10.86 38.64 4.40
32 33 2.093500 GTGAGGGATTTTCCAAATGCCC 60.093 50.000 14.25 10.73 38.64 5.36
33 34 2.187100 GAGGGATTTTCCAAATGCCCA 58.813 47.619 14.25 0.00 38.64 5.36
34 35 2.571202 GAGGGATTTTCCAAATGCCCAA 59.429 45.455 14.25 0.00 38.64 4.12
35 36 2.305635 AGGGATTTTCCAAATGCCCAAC 59.694 45.455 14.25 0.00 38.64 3.77
36 37 2.039613 GGGATTTTCCAAATGCCCAACA 59.960 45.455 8.23 0.00 38.64 3.33
37 38 3.308331 GGGATTTTCCAAATGCCCAACAT 60.308 43.478 8.23 0.00 38.49 2.71
38 39 4.080638 GGGATTTTCCAAATGCCCAACATA 60.081 41.667 8.23 0.00 36.63 2.29
39 40 5.397786 GGGATTTTCCAAATGCCCAACATAT 60.398 40.000 8.23 0.00 36.63 1.78
40 41 6.183361 GGGATTTTCCAAATGCCCAACATATA 60.183 38.462 8.23 0.00 36.63 0.86
41 42 7.452562 GGATTTTCCAAATGCCCAACATATAT 58.547 34.615 0.00 0.00 35.46 0.86
42 43 7.388500 GGATTTTCCAAATGCCCAACATATATG 59.612 37.037 11.29 11.29 35.46 1.78
43 44 4.870123 TCCAAATGCCCAACATATATGC 57.130 40.909 12.79 0.00 38.34 3.14
44 45 4.221530 TCCAAATGCCCAACATATATGCA 58.778 39.130 12.79 4.93 38.34 3.96
45 46 4.281435 TCCAAATGCCCAACATATATGCAG 59.719 41.667 12.79 5.42 38.34 4.41
46 47 4.039488 CCAAATGCCCAACATATATGCAGT 59.961 41.667 12.79 0.98 38.34 4.40
47 48 5.243507 CCAAATGCCCAACATATATGCAGTA 59.756 40.000 12.79 0.00 38.34 2.74
48 49 5.964958 AATGCCCAACATATATGCAGTAC 57.035 39.130 12.79 1.16 38.34 2.73
49 50 4.705110 TGCCCAACATATATGCAGTACT 57.295 40.909 12.79 0.00 0.00 2.73
50 51 5.816955 TGCCCAACATATATGCAGTACTA 57.183 39.130 12.79 0.00 0.00 1.82
51 52 6.373005 TGCCCAACATATATGCAGTACTAT 57.627 37.500 12.79 0.00 0.00 2.12
52 53 7.489239 TGCCCAACATATATGCAGTACTATA 57.511 36.000 12.79 0.00 0.00 1.31
53 54 8.089625 TGCCCAACATATATGCAGTACTATAT 57.910 34.615 12.79 0.00 0.00 0.86
54 55 7.986889 TGCCCAACATATATGCAGTACTATATG 59.013 37.037 17.65 17.65 41.18 1.78
55 56 7.442364 GCCCAACATATATGCAGTACTATATGG 59.558 40.741 21.01 11.32 40.35 2.74
56 57 8.704668 CCCAACATATATGCAGTACTATATGGA 58.295 37.037 21.01 3.14 40.35 3.41
60 61 9.803315 ACATATATGCAGTACTATATGGAAACG 57.197 33.333 21.01 4.29 40.35 3.60
61 62 9.803315 CATATATGCAGTACTATATGGAAACGT 57.197 33.333 13.74 0.00 35.82 3.99
64 65 5.513376 TGCAGTACTATATGGAAACGTACG 58.487 41.667 15.01 15.01 36.48 3.67
65 66 5.066375 TGCAGTACTATATGGAAACGTACGT 59.934 40.000 16.72 16.72 36.48 3.57
66 67 5.622856 GCAGTACTATATGGAAACGTACGTC 59.377 44.000 23.05 10.11 36.48 4.34
67 68 6.512415 GCAGTACTATATGGAAACGTACGTCT 60.512 42.308 23.05 7.97 36.48 4.18
68 69 7.068341 CAGTACTATATGGAAACGTACGTCTC 58.932 42.308 23.05 17.98 36.48 3.36
69 70 6.989169 AGTACTATATGGAAACGTACGTCTCT 59.011 38.462 23.05 9.39 36.48 3.10
70 71 6.057627 ACTATATGGAAACGTACGTCTCTG 57.942 41.667 23.05 7.44 33.87 3.35
71 72 4.978083 ATATGGAAACGTACGTCTCTGT 57.022 40.909 23.05 12.33 33.87 3.41
72 73 2.410785 TGGAAACGTACGTCTCTGTG 57.589 50.000 23.05 0.00 0.00 3.66
73 74 1.001048 TGGAAACGTACGTCTCTGTGG 60.001 52.381 23.05 0.00 0.00 4.17
74 75 1.058404 GAAACGTACGTCTCTGTGGC 58.942 55.000 23.05 1.54 0.00 5.01
75 76 0.319297 AAACGTACGTCTCTGTGGCC 60.319 55.000 23.05 0.00 0.00 5.36
76 77 1.457823 AACGTACGTCTCTGTGGCCA 61.458 55.000 23.05 0.00 0.00 5.36
77 78 1.443872 CGTACGTCTCTGTGGCCAC 60.444 63.158 29.67 29.67 0.00 5.01
78 79 1.443872 GTACGTCTCTGTGGCCACG 60.444 63.158 30.07 23.48 38.24 4.94
79 80 1.900016 TACGTCTCTGTGGCCACGT 60.900 57.895 30.07 24.12 46.66 4.49
80 81 1.457823 TACGTCTCTGTGGCCACGTT 61.458 55.000 30.07 11.44 42.67 3.99
81 82 1.594293 CGTCTCTGTGGCCACGTTT 60.594 57.895 30.07 0.00 0.00 3.60
82 83 1.557443 CGTCTCTGTGGCCACGTTTC 61.557 60.000 30.07 17.39 0.00 2.78
83 84 1.300620 TCTCTGTGGCCACGTTTCG 60.301 57.895 30.07 16.23 0.00 3.46
84 85 1.300620 CTCTGTGGCCACGTTTCGA 60.301 57.895 30.07 18.57 0.00 3.71
85 86 0.670546 CTCTGTGGCCACGTTTCGAT 60.671 55.000 30.07 0.00 0.00 3.59
86 87 0.250124 TCTGTGGCCACGTTTCGATT 60.250 50.000 30.07 0.00 0.00 3.34
87 88 0.110238 CTGTGGCCACGTTTCGATTG 60.110 55.000 30.07 8.08 0.00 2.67
88 89 1.209127 GTGGCCACGTTTCGATTGG 59.791 57.895 22.49 0.00 0.00 3.16
89 90 1.071642 TGGCCACGTTTCGATTGGA 59.928 52.632 0.00 0.00 31.39 3.53
90 91 0.535328 TGGCCACGTTTCGATTGGAA 60.535 50.000 0.00 0.00 31.39 3.53
91 92 0.168128 GGCCACGTTTCGATTGGAAG 59.832 55.000 0.00 0.00 35.70 3.46
92 93 0.872388 GCCACGTTTCGATTGGAAGT 59.128 50.000 6.98 0.00 35.70 3.01
93 94 1.399727 GCCACGTTTCGATTGGAAGTG 60.400 52.381 6.98 3.39 35.70 3.16
94 95 1.871039 CCACGTTTCGATTGGAAGTGT 59.129 47.619 0.00 0.00 35.70 3.55
95 96 3.061322 CCACGTTTCGATTGGAAGTGTA 58.939 45.455 0.00 0.00 35.70 2.90
96 97 3.682858 CCACGTTTCGATTGGAAGTGTAT 59.317 43.478 0.00 0.00 35.70 2.29
97 98 4.865925 CCACGTTTCGATTGGAAGTGTATA 59.134 41.667 0.00 0.00 35.70 1.47
98 99 5.349270 CCACGTTTCGATTGGAAGTGTATAA 59.651 40.000 0.00 0.00 35.70 0.98
99 100 6.036735 CCACGTTTCGATTGGAAGTGTATAAT 59.963 38.462 0.00 0.00 35.70 1.28
100 101 6.899771 CACGTTTCGATTGGAAGTGTATAATG 59.100 38.462 0.00 0.00 35.70 1.90
101 102 6.036735 ACGTTTCGATTGGAAGTGTATAATGG 59.963 38.462 0.00 0.00 35.70 3.16
102 103 6.256975 CGTTTCGATTGGAAGTGTATAATGGA 59.743 38.462 0.00 0.00 35.70 3.41
103 104 7.516785 CGTTTCGATTGGAAGTGTATAATGGAG 60.517 40.741 0.00 0.00 35.70 3.86
104 105 6.724893 TCGATTGGAAGTGTATAATGGAGA 57.275 37.500 0.00 0.00 0.00 3.71
105 106 7.303182 TCGATTGGAAGTGTATAATGGAGAT 57.697 36.000 0.00 0.00 0.00 2.75
106 107 7.154656 TCGATTGGAAGTGTATAATGGAGATG 58.845 38.462 0.00 0.00 0.00 2.90
107 108 6.369890 CGATTGGAAGTGTATAATGGAGATGG 59.630 42.308 0.00 0.00 0.00 3.51
108 109 5.567037 TGGAAGTGTATAATGGAGATGGG 57.433 43.478 0.00 0.00 0.00 4.00
109 110 4.975147 TGGAAGTGTATAATGGAGATGGGT 59.025 41.667 0.00 0.00 0.00 4.51
110 111 5.431731 TGGAAGTGTATAATGGAGATGGGTT 59.568 40.000 0.00 0.00 0.00 4.11
111 112 5.998363 GGAAGTGTATAATGGAGATGGGTTC 59.002 44.000 0.00 0.00 0.00 3.62
112 113 5.215252 AGTGTATAATGGAGATGGGTTCG 57.785 43.478 0.00 0.00 0.00 3.95
113 114 3.746492 GTGTATAATGGAGATGGGTTCGC 59.254 47.826 0.00 0.00 0.00 4.70
114 115 2.169832 ATAATGGAGATGGGTTCGCG 57.830 50.000 0.00 0.00 0.00 5.87
115 116 0.105964 TAATGGAGATGGGTTCGCGG 59.894 55.000 6.13 0.00 0.00 6.46
116 117 1.910580 AATGGAGATGGGTTCGCGGT 61.911 55.000 6.13 0.00 0.00 5.68
117 118 2.202892 GGAGATGGGTTCGCGGTC 60.203 66.667 6.13 0.00 0.00 4.79
118 119 2.582498 GAGATGGGTTCGCGGTCG 60.582 66.667 6.13 0.00 0.00 4.79
119 120 4.143333 AGATGGGTTCGCGGTCGG 62.143 66.667 6.13 0.00 36.13 4.79
120 121 4.446413 GATGGGTTCGCGGTCGGT 62.446 66.667 6.13 0.00 36.13 4.69
121 122 3.945304 GATGGGTTCGCGGTCGGTT 62.945 63.158 6.13 0.00 36.13 4.44
122 123 4.973055 TGGGTTCGCGGTCGGTTG 62.973 66.667 6.13 0.00 36.13 3.77
123 124 4.974989 GGGTTCGCGGTCGGTTGT 62.975 66.667 6.13 0.00 36.13 3.32
124 125 2.049248 GGTTCGCGGTCGGTTGTA 60.049 61.111 6.13 0.00 36.13 2.41
125 126 2.374995 GGTTCGCGGTCGGTTGTAC 61.375 63.158 6.13 0.00 36.13 2.90
126 127 1.661197 GTTCGCGGTCGGTTGTACA 60.661 57.895 6.13 0.00 36.13 2.90
127 128 1.372004 TTCGCGGTCGGTTGTACAG 60.372 57.895 6.13 0.00 36.13 2.74
460 461 2.900273 AATAGCGCCGCCTGAGAA 59.100 55.556 4.98 0.00 0.00 2.87
486 487 2.101835 GCGGTAAAATCGGCGTGGA 61.102 57.895 6.85 0.00 0.00 4.02
489 490 1.004595 GGTAAAATCGGCGTGGAGAC 58.995 55.000 6.85 0.98 0.00 3.36
493 494 2.939261 AATCGGCGTGGAGACGGTT 61.939 57.895 6.85 0.00 46.97 4.44
501 502 0.887836 GTGGAGACGGTTGGTTTCCC 60.888 60.000 1.54 0.00 46.80 3.97
502 503 1.346479 TGGAGACGGTTGGTTTCCCA 61.346 55.000 1.54 0.00 46.80 4.37
503 504 2.870833 TGGAGACGGTTGGTTTCCCAA 61.871 52.381 1.54 0.00 46.80 4.12
509 510 3.674906 TTGGTTTCCCAATCGCCG 58.325 55.556 0.00 0.00 45.93 6.46
510 511 2.631580 TTGGTTTCCCAATCGCCGC 61.632 57.895 0.00 0.00 45.93 6.53
511 512 2.750237 GGTTTCCCAATCGCCGCT 60.750 61.111 0.00 0.00 0.00 5.52
551 552 3.242284 GCCGCTTTTTGAAAACCAAAGTC 60.242 43.478 0.00 0.00 44.67 3.01
554 555 4.502645 CGCTTTTTGAAAACCAAAGTCGAT 59.497 37.500 0.00 0.00 44.67 3.59
562 563 8.485976 TTGAAAACCAAAGTCGATCAAAATTT 57.514 26.923 0.00 0.00 0.00 1.82
573 574 6.071391 AGTCGATCAAAATTTGGCCAAACTAT 60.071 34.615 32.62 19.80 32.51 2.12
576 577 6.183360 CGATCAAAATTTGGCCAAACTATGTG 60.183 38.462 32.62 24.05 32.51 3.21
598 599 4.109050 GCAAAACGACACAAATTTGGAGA 58.891 39.130 21.74 0.00 34.25 3.71
604 605 7.463469 AACGACACAAATTTGGAGAAAATTC 57.537 32.000 21.74 6.72 45.73 2.17
607 608 6.144402 CGACACAAATTTGGAGAAAATTCAGG 59.856 38.462 21.74 0.00 45.73 3.86
621 622 3.855689 ATTCAGGCGGTTTCATTGAAG 57.144 42.857 0.00 0.00 32.00 3.02
624 625 1.135972 CAGGCGGTTTCATTGAAGACG 60.136 52.381 15.92 15.92 0.00 4.18
636 638 1.847818 TGAAGACGAGTCAACAACCG 58.152 50.000 5.99 0.00 0.00 4.44
743 760 5.705441 CAGGCGCTCCCTTATTTATTTGATA 59.295 40.000 7.64 0.00 43.06 2.15
744 761 6.206634 CAGGCGCTCCCTTATTTATTTGATAA 59.793 38.462 7.64 0.00 43.06 1.75
775 792 3.795688 TTGTCTTCCTCCAAGCAGAAT 57.204 42.857 0.00 0.00 31.26 2.40
779 796 3.688673 GTCTTCCTCCAAGCAGAATCAAG 59.311 47.826 0.00 0.00 31.26 3.02
780 797 3.584406 TCTTCCTCCAAGCAGAATCAAGA 59.416 43.478 0.00 0.00 31.26 3.02
809 827 2.033602 TGGTCGGTCGCTCTCTCA 59.966 61.111 0.00 0.00 0.00 3.27
896 944 0.469917 ACACAATATGCGAGGGAGGG 59.530 55.000 0.00 0.00 0.00 4.30
950 1003 1.071471 AGCCAAGTGAGGTTGTCCG 59.929 57.895 0.00 0.00 39.05 4.79
951 1004 1.227853 GCCAAGTGAGGTTGTCCGT 60.228 57.895 0.00 0.00 39.05 4.69
952 1005 1.228657 GCCAAGTGAGGTTGTCCGTC 61.229 60.000 0.00 0.00 39.05 4.79
960 1021 1.153997 GGTTGTCCGTCTCTCGCTC 60.154 63.158 0.00 0.00 38.35 5.03
979 1040 1.745264 GCCCGATCTCTTCCTCCTG 59.255 63.158 0.00 0.00 0.00 3.86
995 1056 0.395862 CCTGCCTTCCCTCTCGTCTA 60.396 60.000 0.00 0.00 0.00 2.59
1007 1132 3.490933 CCTCTCGTCTATTTCATGGCGAA 60.491 47.826 0.00 0.00 0.00 4.70
1103 1228 0.250513 GAACAAGGATCACCGGAGCT 59.749 55.000 9.46 0.00 41.83 4.09
1270 1395 9.979270 GTCTCTCTTGAAATGTTATGTTATGTG 57.021 33.333 0.00 0.00 0.00 3.21
1278 1403 6.431198 AATGTTATGTTATGTGGTTCGACC 57.569 37.500 0.00 0.00 39.22 4.79
1315 1440 3.785486 TCTCTGTTGATGTGATTAGGCG 58.215 45.455 0.00 0.00 0.00 5.52
1373 1498 1.816679 GTGATCGCAGGCATGAGCA 60.817 57.895 0.62 0.00 44.61 4.26
1435 1560 3.307782 CGAACAAACGGACAAAGTACACT 59.692 43.478 0.00 0.00 0.00 3.55
1440 1565 1.268899 ACGGACAAAGTACACTCCTCG 59.731 52.381 0.00 0.00 0.00 4.63
1526 1651 7.408132 TTCGAGAAACTAAGTTGTCATCTTG 57.592 36.000 6.44 0.00 0.00 3.02
1623 1764 3.476419 CGGGGGCCCAAGTACGAT 61.476 66.667 26.86 0.00 35.37 3.73
1661 1802 7.137426 CAGAAAAACAAGATCAAGGAAGTCAG 58.863 38.462 0.00 0.00 0.00 3.51
1662 1803 5.444663 AAAACAAGATCAAGGAAGTCAGC 57.555 39.130 0.00 0.00 0.00 4.26
1727 1868 2.034053 CCAATAGTCTCGAGCCTCTCAC 59.966 54.545 7.81 0.00 0.00 3.51
1750 1891 1.612146 TCCTCGTTCCAGGATGCCA 60.612 57.895 0.00 0.00 37.68 4.92
1751 1892 1.198094 TCCTCGTTCCAGGATGCCAA 61.198 55.000 0.00 0.00 37.68 4.52
1782 1923 1.125093 TTGAAGAGGCCGGACCAGAA 61.125 55.000 1.76 0.00 43.14 3.02
1795 1936 1.296392 CCAGAACTGCCGGATGTCA 59.704 57.895 5.05 0.00 0.00 3.58
1839 1980 1.378762 GCCAACCTACTTCCCAGCA 59.621 57.895 0.00 0.00 0.00 4.41
1848 1989 3.008049 CCTACTTCCCAGCACACTACTTT 59.992 47.826 0.00 0.00 0.00 2.66
1955 2096 1.221293 CCAGGGAGCAGCTTCTCAG 59.779 63.158 15.44 4.47 34.84 3.35
2213 2413 2.243810 CTACCTCTACATCCAGGCTCC 58.756 57.143 0.00 0.00 32.32 4.70
2237 2437 3.550437 ACGTACGTACATACTCCCTCT 57.450 47.619 21.41 0.00 0.00 3.69
2238 2438 4.672587 ACGTACGTACATACTCCCTCTA 57.327 45.455 21.41 0.00 0.00 2.43
2239 2439 5.220710 ACGTACGTACATACTCCCTCTAT 57.779 43.478 21.41 0.00 0.00 1.98
2240 2440 5.233988 ACGTACGTACATACTCCCTCTATC 58.766 45.833 21.41 0.00 0.00 2.08
2241 2441 5.011533 ACGTACGTACATACTCCCTCTATCT 59.988 44.000 21.41 0.00 0.00 1.98
2242 2442 5.576384 CGTACGTACATACTCCCTCTATCTC 59.424 48.000 24.50 0.00 0.00 2.75
2243 2443 5.563876 ACGTACATACTCCCTCTATCTCA 57.436 43.478 0.00 0.00 0.00 3.27
2244 2444 5.938279 ACGTACATACTCCCTCTATCTCAA 58.062 41.667 0.00 0.00 0.00 3.02
2245 2445 6.363065 ACGTACATACTCCCTCTATCTCAAA 58.637 40.000 0.00 0.00 0.00 2.69
2246 2446 6.832384 ACGTACATACTCCCTCTATCTCAAAA 59.168 38.462 0.00 0.00 0.00 2.44
2247 2447 7.506261 ACGTACATACTCCCTCTATCTCAAAAT 59.494 37.037 0.00 0.00 0.00 1.82
2248 2448 9.011095 CGTACATACTCCCTCTATCTCAAAATA 57.989 37.037 0.00 0.00 0.00 1.40
2251 2451 9.440761 ACATACTCCCTCTATCTCAAAATAAGT 57.559 33.333 0.00 0.00 0.00 2.24
2252 2452 9.703892 CATACTCCCTCTATCTCAAAATAAGTG 57.296 37.037 0.00 0.00 0.00 3.16
2253 2453 7.979786 ACTCCCTCTATCTCAAAATAAGTGA 57.020 36.000 0.00 0.00 0.00 3.41
2254 2454 7.787028 ACTCCCTCTATCTCAAAATAAGTGAC 58.213 38.462 0.00 0.00 0.00 3.67
2255 2455 7.621683 ACTCCCTCTATCTCAAAATAAGTGACT 59.378 37.037 0.00 0.00 0.00 3.41
2256 2456 8.012957 TCCCTCTATCTCAAAATAAGTGACTC 57.987 38.462 0.00 0.00 0.00 3.36
2257 2457 7.619698 TCCCTCTATCTCAAAATAAGTGACTCA 59.380 37.037 0.00 0.00 0.00 3.41
2258 2458 8.260818 CCCTCTATCTCAAAATAAGTGACTCAA 58.739 37.037 0.00 0.00 0.00 3.02
2259 2459 9.092876 CCTCTATCTCAAAATAAGTGACTCAAC 57.907 37.037 0.00 0.00 0.00 3.18
2260 2460 9.868277 CTCTATCTCAAAATAAGTGACTCAACT 57.132 33.333 0.00 0.00 0.00 3.16
2301 2501 8.004087 ACTAAAGTTAGTACACAGTTGAGTCA 57.996 34.615 1.81 0.00 41.92 3.41
2302 2502 8.639761 ACTAAAGTTAGTACACAGTTGAGTCAT 58.360 33.333 1.81 0.00 41.92 3.06
2303 2503 9.477484 CTAAAGTTAGTACACAGTTGAGTCATT 57.523 33.333 0.00 0.00 0.00 2.57
2304 2504 8.732746 AAAGTTAGTACACAGTTGAGTCATTT 57.267 30.769 0.00 0.00 0.00 2.32
2305 2505 9.826574 AAAGTTAGTACACAGTTGAGTCATTTA 57.173 29.630 0.00 0.00 0.00 1.40
2306 2506 9.998106 AAGTTAGTACACAGTTGAGTCATTTAT 57.002 29.630 0.00 0.00 0.00 1.40
2307 2507 9.998106 AGTTAGTACACAGTTGAGTCATTTATT 57.002 29.630 0.00 0.00 0.00 1.40
2311 2511 8.567948 AGTACACAGTTGAGTCATTTATTTTGG 58.432 33.333 0.00 0.00 0.00 3.28
2312 2512 6.748132 ACACAGTTGAGTCATTTATTTTGGG 58.252 36.000 0.00 0.00 0.00 4.12
2313 2513 6.549364 ACACAGTTGAGTCATTTATTTTGGGA 59.451 34.615 0.00 0.00 0.00 4.37
2314 2514 6.863126 CACAGTTGAGTCATTTATTTTGGGAC 59.137 38.462 0.00 0.00 0.00 4.46
2315 2515 6.015434 ACAGTTGAGTCATTTATTTTGGGACC 60.015 38.462 0.00 0.00 0.00 4.46
2316 2516 5.183140 AGTTGAGTCATTTATTTTGGGACCG 59.817 40.000 0.00 0.00 0.00 4.79
2317 2517 4.912586 TGAGTCATTTATTTTGGGACCGA 58.087 39.130 0.00 0.00 0.00 4.69
2318 2518 4.941263 TGAGTCATTTATTTTGGGACCGAG 59.059 41.667 0.00 0.00 0.00 4.63
2319 2519 4.270008 AGTCATTTATTTTGGGACCGAGG 58.730 43.478 0.00 0.00 0.00 4.63
2320 2520 4.018779 AGTCATTTATTTTGGGACCGAGGA 60.019 41.667 0.00 0.00 0.00 3.71
2321 2521 4.703093 GTCATTTATTTTGGGACCGAGGAA 59.297 41.667 0.00 0.00 0.00 3.36
2322 2522 4.947388 TCATTTATTTTGGGACCGAGGAAG 59.053 41.667 0.00 0.00 0.00 3.46
2348 2550 5.302360 TGTACAAGTGATCAACCACCTTAC 58.698 41.667 0.00 0.00 37.76 2.34
2352 2554 2.986728 AGTGATCAACCACCTTACCCTT 59.013 45.455 0.00 0.00 37.76 3.95
2419 2630 6.485648 AGTCCCTACAAACTAAAACATGTGTC 59.514 38.462 0.00 0.00 0.00 3.67
2469 2684 3.361158 CCAATGGGCAACGCGACA 61.361 61.111 15.93 3.70 37.60 4.35
2494 2709 0.321919 GAACATGGCTGACCTGCTCA 60.322 55.000 0.00 0.00 36.63 4.26
2556 2771 1.553704 GACTTGACCACGGGGAAGTAT 59.446 52.381 12.96 0.00 38.05 2.12
2563 2778 1.191535 CACGGGGAAGTATGAGACCA 58.808 55.000 0.00 0.00 0.00 4.02
2627 2842 2.281517 CTTCTCCGAGCTTCTAGTCGA 58.718 52.381 2.30 0.00 38.50 4.20
2628 2843 2.623878 TCTCCGAGCTTCTAGTCGAT 57.376 50.000 2.30 0.00 38.50 3.59
2655 2870 1.739067 ATCTGCGCCTTAAGGAACAC 58.261 50.000 26.21 10.70 37.39 3.32
2747 3014 9.436957 AATATATATTTGTCGATCCACCAACTC 57.563 33.333 1.91 0.00 0.00 3.01
2748 3015 2.920724 TTTGTCGATCCACCAACTCA 57.079 45.000 0.00 0.00 0.00 3.41
2749 3016 3.417069 TTTGTCGATCCACCAACTCAT 57.583 42.857 0.00 0.00 0.00 2.90
2750 3017 2.385013 TGTCGATCCACCAACTCATG 57.615 50.000 0.00 0.00 0.00 3.07
2751 3018 1.899142 TGTCGATCCACCAACTCATGA 59.101 47.619 0.00 0.00 0.00 3.07
2752 3019 2.271800 GTCGATCCACCAACTCATGAC 58.728 52.381 0.00 0.00 0.00 3.06
2753 3020 1.207089 TCGATCCACCAACTCATGACC 59.793 52.381 0.00 0.00 0.00 4.02
2754 3021 1.208052 CGATCCACCAACTCATGACCT 59.792 52.381 0.00 0.00 0.00 3.85
2755 3022 2.355108 CGATCCACCAACTCATGACCTT 60.355 50.000 0.00 0.00 0.00 3.50
2756 3023 3.118775 CGATCCACCAACTCATGACCTTA 60.119 47.826 0.00 0.00 0.00 2.69
2757 3024 4.622933 CGATCCACCAACTCATGACCTTAA 60.623 45.833 0.00 0.00 0.00 1.85
2758 3025 4.286297 TCCACCAACTCATGACCTTAAG 57.714 45.455 0.00 0.00 0.00 1.85
2759 3026 3.009033 TCCACCAACTCATGACCTTAAGG 59.991 47.826 20.42 20.42 42.17 2.69
2760 3027 3.009033 CCACCAACTCATGACCTTAAGGA 59.991 47.826 28.52 6.97 38.94 3.36
2761 3028 4.506625 CCACCAACTCATGACCTTAAGGAA 60.507 45.833 28.52 15.56 38.94 3.36
2762 3029 4.455877 CACCAACTCATGACCTTAAGGAAC 59.544 45.833 28.52 19.75 38.94 3.62
2763 3030 4.104102 ACCAACTCATGACCTTAAGGAACA 59.896 41.667 28.52 24.12 38.94 3.18
2764 3031 5.070001 CCAACTCATGACCTTAAGGAACAA 58.930 41.667 28.52 10.21 38.94 2.83
2765 3032 5.048713 CCAACTCATGACCTTAAGGAACAAC 60.049 44.000 28.52 12.97 38.94 3.32
2766 3033 5.304686 ACTCATGACCTTAAGGAACAACA 57.695 39.130 28.52 17.47 38.94 3.33
2767 3034 5.690865 ACTCATGACCTTAAGGAACAACAA 58.309 37.500 28.52 14.07 38.94 2.83
2768 3035 5.531287 ACTCATGACCTTAAGGAACAACAAC 59.469 40.000 28.52 8.62 38.94 3.32
2769 3036 5.441500 TCATGACCTTAAGGAACAACAACA 58.558 37.500 28.52 13.20 38.94 3.33
2770 3037 5.888724 TCATGACCTTAAGGAACAACAACAA 59.111 36.000 28.52 4.56 38.94 2.83
2771 3038 5.570234 TGACCTTAAGGAACAACAACAAC 57.430 39.130 28.52 5.00 38.94 3.32
2772 3039 4.095185 TGACCTTAAGGAACAACAACAACG 59.905 41.667 28.52 0.00 38.94 4.10
2773 3040 4.263435 ACCTTAAGGAACAACAACAACGA 58.737 39.130 28.52 0.00 38.94 3.85
2774 3041 4.095334 ACCTTAAGGAACAACAACAACGAC 59.905 41.667 28.52 0.00 38.94 4.34
2775 3042 2.817538 AAGGAACAACAACAACGACG 57.182 45.000 0.00 0.00 0.00 5.12
2776 3043 2.012937 AGGAACAACAACAACGACGA 57.987 45.000 0.00 0.00 0.00 4.20
2777 3044 1.662122 AGGAACAACAACAACGACGAC 59.338 47.619 0.00 0.00 0.00 4.34
2778 3045 1.394227 GGAACAACAACAACGACGACA 59.606 47.619 0.00 0.00 0.00 4.35
2779 3046 2.159680 GGAACAACAACAACGACGACAA 60.160 45.455 0.00 0.00 0.00 3.18
2780 3047 2.798834 ACAACAACAACGACGACAAG 57.201 45.000 0.00 0.00 0.00 3.16
2781 3048 1.395608 ACAACAACAACGACGACAAGG 59.604 47.619 0.00 0.00 0.00 3.61
2782 3049 1.661617 CAACAACAACGACGACAAGGA 59.338 47.619 0.00 0.00 0.00 3.36
2783 3050 1.567504 ACAACAACGACGACAAGGAG 58.432 50.000 0.00 0.00 0.00 3.69
2784 3051 1.135527 ACAACAACGACGACAAGGAGA 59.864 47.619 0.00 0.00 0.00 3.71
2785 3052 2.198406 CAACAACGACGACAAGGAGAA 58.802 47.619 0.00 0.00 0.00 2.87
2786 3053 2.135664 ACAACGACGACAAGGAGAAG 57.864 50.000 0.00 0.00 0.00 2.85
2787 3054 1.679680 ACAACGACGACAAGGAGAAGA 59.320 47.619 0.00 0.00 0.00 2.87
2788 3055 2.100252 ACAACGACGACAAGGAGAAGAA 59.900 45.455 0.00 0.00 0.00 2.52
2789 3056 2.418983 ACGACGACAAGGAGAAGAAC 57.581 50.000 0.00 0.00 0.00 3.01
2790 3057 1.679680 ACGACGACAAGGAGAAGAACA 59.320 47.619 0.00 0.00 0.00 3.18
2791 3058 2.287668 ACGACGACAAGGAGAAGAACAG 60.288 50.000 0.00 0.00 0.00 3.16
2792 3059 2.031069 CGACGACAAGGAGAAGAACAGA 60.031 50.000 0.00 0.00 0.00 3.41
2793 3060 3.550233 CGACGACAAGGAGAAGAACAGAA 60.550 47.826 0.00 0.00 0.00 3.02
2794 3061 3.718815 ACGACAAGGAGAAGAACAGAAC 58.281 45.455 0.00 0.00 0.00 3.01
2795 3062 2.726760 CGACAAGGAGAAGAACAGAACG 59.273 50.000 0.00 0.00 0.00 3.95
2796 3063 3.060602 GACAAGGAGAAGAACAGAACGG 58.939 50.000 0.00 0.00 0.00 4.44
2797 3064 2.224305 ACAAGGAGAAGAACAGAACGGG 60.224 50.000 0.00 0.00 0.00 5.28
2798 3065 2.011122 AGGAGAAGAACAGAACGGGA 57.989 50.000 0.00 0.00 0.00 5.14
2799 3066 2.541466 AGGAGAAGAACAGAACGGGAT 58.459 47.619 0.00 0.00 0.00 3.85
2800 3067 2.907042 AGGAGAAGAACAGAACGGGATT 59.093 45.455 0.00 0.00 0.00 3.01
2801 3068 3.055747 AGGAGAAGAACAGAACGGGATTC 60.056 47.826 0.00 0.00 37.62 2.52
2802 3069 3.306780 GGAGAAGAACAGAACGGGATTCA 60.307 47.826 0.00 0.00 40.09 2.57
2803 3070 4.508662 GAGAAGAACAGAACGGGATTCAT 58.491 43.478 0.00 0.00 40.09 2.57
2804 3071 4.911390 AGAAGAACAGAACGGGATTCATT 58.089 39.130 0.00 0.00 40.09 2.57
2805 3072 5.316987 AGAAGAACAGAACGGGATTCATTT 58.683 37.500 0.00 0.00 40.09 2.32
2806 3073 5.182001 AGAAGAACAGAACGGGATTCATTTG 59.818 40.000 0.00 0.00 40.09 2.32
2807 3074 3.191371 AGAACAGAACGGGATTCATTTGC 59.809 43.478 0.00 0.00 40.09 3.68
2808 3075 2.795329 ACAGAACGGGATTCATTTGCT 58.205 42.857 0.00 0.00 40.09 3.91
2809 3076 3.157087 ACAGAACGGGATTCATTTGCTT 58.843 40.909 0.00 0.00 40.09 3.91
2810 3077 4.331968 ACAGAACGGGATTCATTTGCTTA 58.668 39.130 0.00 0.00 40.09 3.09
2811 3078 4.764823 ACAGAACGGGATTCATTTGCTTAA 59.235 37.500 0.00 0.00 40.09 1.85
2812 3079 5.095490 CAGAACGGGATTCATTTGCTTAAC 58.905 41.667 0.00 0.00 40.09 2.01
2813 3080 4.764823 AGAACGGGATTCATTTGCTTAACA 59.235 37.500 0.00 0.00 40.09 2.41
2814 3081 5.418840 AGAACGGGATTCATTTGCTTAACAT 59.581 36.000 0.00 0.00 40.09 2.71
2815 3082 5.659440 ACGGGATTCATTTGCTTAACATT 57.341 34.783 0.00 0.00 0.00 2.71
2816 3083 6.767524 ACGGGATTCATTTGCTTAACATTA 57.232 33.333 0.00 0.00 0.00 1.90
2817 3084 7.346751 ACGGGATTCATTTGCTTAACATTAT 57.653 32.000 0.00 0.00 0.00 1.28
2818 3085 7.781056 ACGGGATTCATTTGCTTAACATTATT 58.219 30.769 0.00 0.00 0.00 1.40
2819 3086 7.706179 ACGGGATTCATTTGCTTAACATTATTG 59.294 33.333 0.00 0.00 0.00 1.90
2820 3087 7.920151 CGGGATTCATTTGCTTAACATTATTGA 59.080 33.333 0.00 0.00 0.00 2.57
2821 3088 9.598517 GGGATTCATTTGCTTAACATTATTGAA 57.401 29.630 0.00 0.00 0.00 2.69
2837 3104 9.376075 ACATTATTGAATGATCATAGTCGATCC 57.624 33.333 9.04 0.00 44.59 3.36
2921 3188 7.760340 AGTTTGTTATGACTCGATTAGGAGAAC 59.240 37.037 0.00 0.00 37.49 3.01
2923 3190 6.796426 TGTTATGACTCGATTAGGAGAACTG 58.204 40.000 0.00 0.00 37.49 3.16
2929 3196 6.093771 TGACTCGATTAGGAGAACTGAACTAC 59.906 42.308 0.00 0.00 37.49 2.73
2938 3205 5.654650 AGGAGAACTGAACTACGATGAGAAT 59.345 40.000 0.00 0.00 0.00 2.40
2949 3216 8.415950 AACTACGATGAGAATATCAGAAGGAT 57.584 34.615 0.00 0.00 42.53 3.24
2953 3220 7.825681 ACGATGAGAATATCAGAAGGATACAG 58.174 38.462 0.00 0.00 42.53 2.74
2968 3235 7.515514 AGAAGGATACAGATCTTTATGTCCCAT 59.484 37.037 6.12 0.00 31.86 4.00
2970 3237 6.071108 AGGATACAGATCTTTATGTCCCATCG 60.071 42.308 6.12 0.00 41.41 3.84
2974 3241 4.281941 CAGATCTTTATGTCCCATCGAGGA 59.718 45.833 0.00 0.00 41.22 3.71
2983 3250 2.632996 GTCCCATCGAGGATACATGGAA 59.367 50.000 0.00 0.00 39.73 3.53
2992 3259 2.127708 GGATACATGGAAGAGGGGTGT 58.872 52.381 0.00 0.00 0.00 4.16
3120 3387 5.008980 TCATGCAACCACAAGTATGATTGA 58.991 37.500 0.00 0.00 33.01 2.57
3122 3389 4.397420 TGCAACCACAAGTATGATTGAGT 58.603 39.130 0.00 0.00 34.20 3.41
3123 3390 4.216042 TGCAACCACAAGTATGATTGAGTG 59.784 41.667 0.00 0.00 34.20 3.51
3124 3391 4.216257 GCAACCACAAGTATGATTGAGTGT 59.784 41.667 0.00 0.00 34.20 3.55
3125 3392 5.278463 GCAACCACAAGTATGATTGAGTGTT 60.278 40.000 0.00 0.00 34.20 3.32
3126 3393 5.947228 ACCACAAGTATGATTGAGTGTTG 57.053 39.130 0.00 0.00 34.20 3.33
3127 3394 4.216257 ACCACAAGTATGATTGAGTGTTGC 59.784 41.667 0.00 0.00 34.20 4.17
3128 3395 4.216042 CCACAAGTATGATTGAGTGTTGCA 59.784 41.667 0.00 0.00 34.20 4.08
3129 3396 5.149273 CACAAGTATGATTGAGTGTTGCAC 58.851 41.667 0.00 0.00 34.20 4.57
3194 3461 3.361794 TGCAACGCACATACACATTTT 57.638 38.095 0.00 0.00 31.71 1.82
3251 3518 0.181587 TTGCAAAGACCGAGGGTTGA 59.818 50.000 0.00 0.00 35.25 3.18
3272 3539 8.581578 GGTTGATTTCCCTCTTACATTAACAAA 58.418 33.333 0.00 0.00 0.00 2.83
3338 3605 3.013276 GACGTCAGTCAAGATGTGTCA 57.987 47.619 11.55 0.00 46.32 3.58
3339 3606 3.579709 GACGTCAGTCAAGATGTGTCAT 58.420 45.455 11.55 0.00 46.32 3.06
3340 3607 3.990469 GACGTCAGTCAAGATGTGTCATT 59.010 43.478 11.55 0.00 46.32 2.57
3341 3608 5.134202 ACGTCAGTCAAGATGTGTCATTA 57.866 39.130 0.00 0.00 36.45 1.90
3342 3609 4.923871 ACGTCAGTCAAGATGTGTCATTAC 59.076 41.667 0.00 0.00 36.45 1.89
3343 3610 4.923281 CGTCAGTCAAGATGTGTCATTACA 59.077 41.667 0.00 0.00 34.63 2.41
3344 3611 5.578336 CGTCAGTCAAGATGTGTCATTACAT 59.422 40.000 0.00 0.00 43.61 2.29
3345 3612 6.091305 CGTCAGTCAAGATGTGTCATTACATT 59.909 38.462 0.00 0.00 41.15 2.71
3346 3613 7.275560 CGTCAGTCAAGATGTGTCATTACATTA 59.724 37.037 0.00 0.00 41.15 1.90
3347 3614 8.383619 GTCAGTCAAGATGTGTCATTACATTAC 58.616 37.037 0.00 0.00 41.15 1.89
3348 3615 8.093927 TCAGTCAAGATGTGTCATTACATTACA 58.906 33.333 0.00 0.00 41.15 2.41
3349 3616 8.171196 CAGTCAAGATGTGTCATTACATTACAC 58.829 37.037 0.00 0.00 41.15 2.90
3356 3623 5.390613 GTGTCATTACATTACACAACAGCC 58.609 41.667 0.00 0.00 42.40 4.85
3357 3624 5.049060 GTGTCATTACATTACACAACAGCCA 60.049 40.000 0.00 0.00 42.40 4.75
3358 3625 5.709631 TGTCATTACATTACACAACAGCCAT 59.290 36.000 0.00 0.00 0.00 4.40
3359 3626 6.029607 GTCATTACATTACACAACAGCCATG 58.970 40.000 0.00 0.00 0.00 3.66
3360 3627 5.709631 TCATTACATTACACAACAGCCATGT 59.290 36.000 0.00 0.00 43.15 3.21
3369 3636 3.919163 ACAGCCATGTTGCAAATGG 57.081 47.368 24.62 24.62 46.29 3.16
3370 3637 1.050204 ACAGCCATGTTGCAAATGGT 58.950 45.000 27.02 17.70 45.46 3.55
3371 3638 1.270412 ACAGCCATGTTGCAAATGGTG 60.270 47.619 27.02 24.64 45.46 4.17
3389 3656 2.685897 GGTGCTAAAATTGACCGGCATA 59.314 45.455 0.00 0.00 32.38 3.14
3403 3670 0.669077 GGCATACGATGAGGACGTCT 59.331 55.000 16.46 0.90 43.62 4.18
3414 3681 2.031163 GACGTCTGGCCAGCACTT 59.969 61.111 28.91 19.07 0.00 3.16
3421 3689 2.345991 GGCCAGCACTTACACGGA 59.654 61.111 0.00 0.00 0.00 4.69
3431 3699 3.680475 GCACTTACACGGACCAATATCCA 60.680 47.826 0.00 0.00 38.87 3.41
3581 3849 3.193691 CAGGTCCTAGAGTGTTTCGACAT 59.806 47.826 0.00 0.00 0.00 3.06
3643 3911 4.460683 GTGGCCGGCGTGGTATGA 62.461 66.667 22.54 0.00 41.21 2.15
3651 3919 2.889617 CGTGGTATGAGCCGGACA 59.110 61.111 5.05 4.62 0.00 4.02
3682 3950 2.584064 CCAGCTCGCATACCACCA 59.416 61.111 0.00 0.00 0.00 4.17
3687 3955 1.227943 CTCGCATACCACCATGGGG 60.228 63.158 18.09 13.08 43.37 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.066505 GGAAAATCCCTCACATGTATCACAC 59.933 44.000 0.00 0.00 0.00 3.82
1 2 5.192927 GGAAAATCCCTCACATGTATCACA 58.807 41.667 0.00 0.00 0.00 3.58
2 3 5.192927 TGGAAAATCCCTCACATGTATCAC 58.807 41.667 0.00 0.00 35.03 3.06
3 4 5.449297 TGGAAAATCCCTCACATGTATCA 57.551 39.130 0.00 0.00 35.03 2.15
4 5 6.773976 TTTGGAAAATCCCTCACATGTATC 57.226 37.500 0.00 0.00 35.03 2.24
5 6 6.407299 GCATTTGGAAAATCCCTCACATGTAT 60.407 38.462 0.00 0.00 35.03 2.29
6 7 5.105392 GCATTTGGAAAATCCCTCACATGTA 60.105 40.000 0.00 0.00 35.03 2.29
7 8 4.322953 GCATTTGGAAAATCCCTCACATGT 60.323 41.667 0.00 0.00 35.03 3.21
8 9 4.186159 GCATTTGGAAAATCCCTCACATG 58.814 43.478 0.00 0.00 35.03 3.21
9 10 3.198417 GGCATTTGGAAAATCCCTCACAT 59.802 43.478 0.00 0.00 35.03 3.21
10 11 2.566724 GGCATTTGGAAAATCCCTCACA 59.433 45.455 0.00 0.00 35.03 3.58
11 12 2.093500 GGGCATTTGGAAAATCCCTCAC 60.093 50.000 10.51 0.00 35.03 3.51
12 13 2.187100 GGGCATTTGGAAAATCCCTCA 58.813 47.619 10.51 0.00 35.03 3.86
13 14 2.187100 TGGGCATTTGGAAAATCCCTC 58.813 47.619 15.28 0.81 35.03 4.30
14 15 2.305635 GTTGGGCATTTGGAAAATCCCT 59.694 45.455 15.28 0.00 35.03 4.20
15 16 2.039613 TGTTGGGCATTTGGAAAATCCC 59.960 45.455 10.72 10.72 35.03 3.85
16 17 3.415457 TGTTGGGCATTTGGAAAATCC 57.585 42.857 0.00 0.00 36.96 3.01
17 18 7.095102 GCATATATGTTGGGCATTTGGAAAATC 60.095 37.037 14.14 0.00 38.94 2.17
18 19 6.711645 GCATATATGTTGGGCATTTGGAAAAT 59.288 34.615 14.14 0.00 38.94 1.82
19 20 6.054295 GCATATATGTTGGGCATTTGGAAAA 58.946 36.000 14.14 0.00 38.94 2.29
20 21 5.129980 TGCATATATGTTGGGCATTTGGAAA 59.870 36.000 14.14 0.00 38.94 3.13
21 22 4.652881 TGCATATATGTTGGGCATTTGGAA 59.347 37.500 14.14 0.00 38.94 3.53
22 23 4.221530 TGCATATATGTTGGGCATTTGGA 58.778 39.130 14.14 0.00 38.94 3.53
23 24 4.039488 ACTGCATATATGTTGGGCATTTGG 59.961 41.667 14.14 0.00 38.94 3.28
24 25 5.204409 ACTGCATATATGTTGGGCATTTG 57.796 39.130 14.14 0.00 38.94 2.32
25 26 6.070656 AGTACTGCATATATGTTGGGCATTT 58.929 36.000 14.14 0.00 38.94 2.32
26 27 5.634118 AGTACTGCATATATGTTGGGCATT 58.366 37.500 14.14 2.89 38.94 3.56
27 28 5.246981 AGTACTGCATATATGTTGGGCAT 57.753 39.130 14.14 0.11 41.42 4.40
28 29 4.705110 AGTACTGCATATATGTTGGGCA 57.295 40.909 14.14 4.72 0.00 5.36
29 30 7.442364 CCATATAGTACTGCATATATGTTGGGC 59.558 40.741 17.65 0.00 39.29 5.36
30 31 8.704668 TCCATATAGTACTGCATATATGTTGGG 58.295 37.037 17.65 7.87 39.29 4.12
34 35 9.803315 CGTTTCCATATAGTACTGCATATATGT 57.197 33.333 17.65 3.26 39.29 2.29
35 36 9.803315 ACGTTTCCATATAGTACTGCATATATG 57.197 33.333 5.39 14.30 40.05 1.78
38 39 7.966753 CGTACGTTTCCATATAGTACTGCATAT 59.033 37.037 7.22 0.00 36.48 1.78
39 40 7.041167 ACGTACGTTTCCATATAGTACTGCATA 60.041 37.037 16.72 0.00 36.48 3.14
40 41 6.147581 CGTACGTTTCCATATAGTACTGCAT 58.852 40.000 7.22 0.00 36.48 3.96
41 42 5.066375 ACGTACGTTTCCATATAGTACTGCA 59.934 40.000 16.72 0.00 36.48 4.41
42 43 5.514279 ACGTACGTTTCCATATAGTACTGC 58.486 41.667 16.72 0.00 36.48 4.40
43 44 6.952743 AGACGTACGTTTCCATATAGTACTG 58.047 40.000 23.70 0.00 36.48 2.74
44 45 6.989169 AGAGACGTACGTTTCCATATAGTACT 59.011 38.462 29.01 14.66 36.48 2.73
45 46 7.068341 CAGAGACGTACGTTTCCATATAGTAC 58.932 42.308 29.01 10.42 35.60 2.73
46 47 6.763135 ACAGAGACGTACGTTTCCATATAGTA 59.237 38.462 29.01 0.00 30.58 1.82
47 48 5.587844 ACAGAGACGTACGTTTCCATATAGT 59.412 40.000 29.01 17.44 30.58 2.12
48 49 5.907945 CACAGAGACGTACGTTTCCATATAG 59.092 44.000 29.01 16.93 30.58 1.31
49 50 5.220912 CCACAGAGACGTACGTTTCCATATA 60.221 44.000 29.01 0.00 30.58 0.86
50 51 4.439700 CCACAGAGACGTACGTTTCCATAT 60.440 45.833 29.01 12.76 30.58 1.78
51 52 3.119743 CCACAGAGACGTACGTTTCCATA 60.120 47.826 29.01 0.00 30.58 2.74
52 53 2.352421 CCACAGAGACGTACGTTTCCAT 60.352 50.000 29.01 17.94 30.58 3.41
53 54 1.001048 CCACAGAGACGTACGTTTCCA 60.001 52.381 29.01 0.00 30.58 3.53
54 55 1.694639 CCACAGAGACGTACGTTTCC 58.305 55.000 29.01 18.06 30.58 3.13
55 56 1.058404 GCCACAGAGACGTACGTTTC 58.942 55.000 26.48 26.48 0.00 2.78
56 57 0.319297 GGCCACAGAGACGTACGTTT 60.319 55.000 23.70 17.78 0.00 3.60
57 58 1.288127 GGCCACAGAGACGTACGTT 59.712 57.895 23.70 12.36 0.00 3.99
58 59 1.900016 TGGCCACAGAGACGTACGT 60.900 57.895 23.04 23.04 0.00 3.57
59 60 1.443872 GTGGCCACAGAGACGTACG 60.444 63.158 31.23 15.01 0.00 3.67
60 61 1.443872 CGTGGCCACAGAGACGTAC 60.444 63.158 34.16 4.55 0.00 3.67
61 62 1.457823 AACGTGGCCACAGAGACGTA 61.458 55.000 34.16 0.00 43.88 3.57
62 63 2.306255 AAACGTGGCCACAGAGACGT 62.306 55.000 34.16 22.54 46.46 4.34
63 64 1.557443 GAAACGTGGCCACAGAGACG 61.557 60.000 34.16 21.85 37.82 4.18
64 65 1.557443 CGAAACGTGGCCACAGAGAC 61.557 60.000 34.16 19.14 0.00 3.36
65 66 1.300620 CGAAACGTGGCCACAGAGA 60.301 57.895 34.16 0.00 0.00 3.10
66 67 0.670546 ATCGAAACGTGGCCACAGAG 60.671 55.000 34.16 20.92 0.00 3.35
67 68 0.250124 AATCGAAACGTGGCCACAGA 60.250 50.000 34.16 23.09 0.00 3.41
68 69 0.110238 CAATCGAAACGTGGCCACAG 60.110 55.000 34.16 27.01 0.00 3.66
69 70 1.511318 CCAATCGAAACGTGGCCACA 61.511 55.000 34.16 15.28 0.00 4.17
70 71 1.209127 CCAATCGAAACGTGGCCAC 59.791 57.895 26.78 26.78 0.00 5.01
71 72 0.535328 TTCCAATCGAAACGTGGCCA 60.535 50.000 0.00 0.00 32.10 5.36
72 73 0.168128 CTTCCAATCGAAACGTGGCC 59.832 55.000 0.00 0.00 32.10 5.36
73 74 0.872388 ACTTCCAATCGAAACGTGGC 59.128 50.000 0.00 0.00 32.10 5.01
74 75 1.871039 ACACTTCCAATCGAAACGTGG 59.129 47.619 0.00 0.00 33.18 4.94
75 76 4.921470 ATACACTTCCAATCGAAACGTG 57.079 40.909 0.00 0.00 34.42 4.49
76 77 6.036735 CCATTATACACTTCCAATCGAAACGT 59.963 38.462 0.00 0.00 0.00 3.99
77 78 6.256975 TCCATTATACACTTCCAATCGAAACG 59.743 38.462 0.00 0.00 0.00 3.60
78 79 7.494625 TCTCCATTATACACTTCCAATCGAAAC 59.505 37.037 0.00 0.00 0.00 2.78
79 80 7.561251 TCTCCATTATACACTTCCAATCGAAA 58.439 34.615 0.00 0.00 0.00 3.46
80 81 7.119709 TCTCCATTATACACTTCCAATCGAA 57.880 36.000 0.00 0.00 0.00 3.71
81 82 6.724893 TCTCCATTATACACTTCCAATCGA 57.275 37.500 0.00 0.00 0.00 3.59
82 83 6.369890 CCATCTCCATTATACACTTCCAATCG 59.630 42.308 0.00 0.00 0.00 3.34
83 84 6.656693 CCCATCTCCATTATACACTTCCAATC 59.343 42.308 0.00 0.00 0.00 2.67
84 85 6.103205 ACCCATCTCCATTATACACTTCCAAT 59.897 38.462 0.00 0.00 0.00 3.16
85 86 5.431731 ACCCATCTCCATTATACACTTCCAA 59.568 40.000 0.00 0.00 0.00 3.53
86 87 4.975147 ACCCATCTCCATTATACACTTCCA 59.025 41.667 0.00 0.00 0.00 3.53
87 88 5.568620 ACCCATCTCCATTATACACTTCC 57.431 43.478 0.00 0.00 0.00 3.46
88 89 5.696724 CGAACCCATCTCCATTATACACTTC 59.303 44.000 0.00 0.00 0.00 3.01
89 90 5.611374 CGAACCCATCTCCATTATACACTT 58.389 41.667 0.00 0.00 0.00 3.16
90 91 4.503296 GCGAACCCATCTCCATTATACACT 60.503 45.833 0.00 0.00 0.00 3.55
91 92 3.746492 GCGAACCCATCTCCATTATACAC 59.254 47.826 0.00 0.00 0.00 2.90
92 93 3.554129 CGCGAACCCATCTCCATTATACA 60.554 47.826 0.00 0.00 0.00 2.29
93 94 2.993899 CGCGAACCCATCTCCATTATAC 59.006 50.000 0.00 0.00 0.00 1.47
94 95 2.028476 CCGCGAACCCATCTCCATTATA 60.028 50.000 8.23 0.00 0.00 0.98
95 96 1.270839 CCGCGAACCCATCTCCATTAT 60.271 52.381 8.23 0.00 0.00 1.28
96 97 0.105964 CCGCGAACCCATCTCCATTA 59.894 55.000 8.23 0.00 0.00 1.90
97 98 1.153168 CCGCGAACCCATCTCCATT 60.153 57.895 8.23 0.00 0.00 3.16
98 99 2.311688 GACCGCGAACCCATCTCCAT 62.312 60.000 8.23 0.00 0.00 3.41
99 100 3.000819 ACCGCGAACCCATCTCCA 61.001 61.111 8.23 0.00 0.00 3.86
100 101 2.202892 GACCGCGAACCCATCTCC 60.203 66.667 8.23 0.00 0.00 3.71
101 102 2.582498 CGACCGCGAACCCATCTC 60.582 66.667 8.23 0.00 40.82 2.75
102 103 4.143333 CCGACCGCGAACCCATCT 62.143 66.667 8.23 0.00 40.82 2.90
103 104 3.945304 AACCGACCGCGAACCCATC 62.945 63.158 8.23 0.00 40.82 3.51
104 105 4.011517 AACCGACCGCGAACCCAT 62.012 61.111 8.23 0.00 40.82 4.00
105 106 4.973055 CAACCGACCGCGAACCCA 62.973 66.667 8.23 0.00 40.82 4.51
106 107 3.572196 TACAACCGACCGCGAACCC 62.572 63.158 8.23 0.00 40.82 4.11
107 108 2.049248 TACAACCGACCGCGAACC 60.049 61.111 8.23 0.00 40.82 3.62
108 109 1.611592 CTGTACAACCGACCGCGAAC 61.612 60.000 8.23 0.00 40.82 3.95
109 110 1.372004 CTGTACAACCGACCGCGAA 60.372 57.895 8.23 0.00 40.82 4.70
110 111 2.256158 CTGTACAACCGACCGCGA 59.744 61.111 8.23 0.00 40.82 5.87
443 444 1.521681 GTTCTCAGGCGGCGCTATT 60.522 57.895 32.30 14.89 0.00 1.73
444 445 2.107141 GTTCTCAGGCGGCGCTAT 59.893 61.111 32.30 18.10 0.00 2.97
445 446 4.492160 CGTTCTCAGGCGGCGCTA 62.492 66.667 32.30 16.27 0.00 4.26
456 457 2.824071 TTTACCGCCGGCTCGTTCTC 62.824 60.000 26.68 0.00 0.00 2.87
457 458 2.438951 TTTTACCGCCGGCTCGTTCT 62.439 55.000 26.68 2.17 0.00 3.01
458 459 1.363885 ATTTTACCGCCGGCTCGTTC 61.364 55.000 26.68 0.00 0.00 3.95
459 460 1.363885 GATTTTACCGCCGGCTCGTT 61.364 55.000 26.68 8.07 0.00 3.85
460 461 1.812507 GATTTTACCGCCGGCTCGT 60.813 57.895 26.68 22.04 0.00 4.18
500 501 3.204827 CCTTGGAGCGGCGATTGG 61.205 66.667 12.98 1.63 0.00 3.16
501 502 2.436646 ACCTTGGAGCGGCGATTG 60.437 61.111 12.98 0.00 0.00 2.67
502 503 2.125106 GACCTTGGAGCGGCGATT 60.125 61.111 12.98 0.00 0.00 3.34
503 504 4.514577 CGACCTTGGAGCGGCGAT 62.515 66.667 12.98 2.76 0.00 4.58
522 523 1.153353 TTCAAAAAGCGGCGTCTAGG 58.847 50.000 9.37 0.00 0.00 3.02
534 535 7.891183 TTTGATCGACTTTGGTTTTCAAAAA 57.109 28.000 3.30 0.00 43.88 1.94
551 552 5.868801 ACATAGTTTGGCCAAATTTTGATCG 59.131 36.000 34.50 21.09 32.36 3.69
554 555 4.754114 GCACATAGTTTGGCCAAATTTTGA 59.246 37.500 34.50 19.66 32.36 2.69
562 563 2.544694 CGTTTTGCACATAGTTTGGCCA 60.545 45.455 0.00 0.00 0.00 5.36
573 574 3.369147 CCAAATTTGTGTCGTTTTGCACA 59.631 39.130 16.73 0.00 42.95 4.57
576 577 4.109050 TCTCCAAATTTGTGTCGTTTTGC 58.891 39.130 16.73 0.00 0.00 3.68
598 599 4.599047 TCAATGAAACCGCCTGAATTTT 57.401 36.364 0.00 0.00 0.00 1.82
604 605 1.135972 CGTCTTCAATGAAACCGCCTG 60.136 52.381 0.00 0.00 0.00 4.85
607 608 1.798813 ACTCGTCTTCAATGAAACCGC 59.201 47.619 8.50 0.00 0.00 5.68
621 622 2.654912 CGGCGGTTGTTGACTCGTC 61.655 63.158 0.00 0.00 0.00 4.20
624 625 3.723348 GCCGGCGGTTGTTGACTC 61.723 66.667 28.82 2.84 0.00 3.36
636 638 0.242555 TTCGATTTTCCTTTGCCGGC 59.757 50.000 22.73 22.73 0.00 6.13
743 760 4.268359 GAGGAAGACAAATGGCATCTCTT 58.732 43.478 0.00 7.54 0.00 2.85
744 761 3.371380 GGAGGAAGACAAATGGCATCTCT 60.371 47.826 0.00 0.00 0.00 3.10
775 792 1.133513 ACCACCAGCAACCAATCTTGA 60.134 47.619 0.00 0.00 0.00 3.02
779 796 1.586154 CCGACCACCAGCAACCAATC 61.586 60.000 0.00 0.00 0.00 2.67
780 797 1.603455 CCGACCACCAGCAACCAAT 60.603 57.895 0.00 0.00 0.00 3.16
809 827 0.677842 AAGCGTCGGACTAAGGTTGT 59.322 50.000 6.57 0.00 0.00 3.32
950 1003 3.530398 GATCGGGCGAGCGAGAGAC 62.530 68.421 0.00 0.00 0.00 3.36
951 1004 3.280634 GATCGGGCGAGCGAGAGA 61.281 66.667 0.00 0.00 0.00 3.10
952 1005 3.248630 GAGATCGGGCGAGCGAGAG 62.249 68.421 0.00 0.00 35.44 3.20
960 1021 1.830408 AGGAGGAAGAGATCGGGCG 60.830 63.158 0.00 0.00 0.00 6.13
979 1040 2.431057 TGAAATAGACGAGAGGGAAGGC 59.569 50.000 0.00 0.00 0.00 4.35
995 1056 2.890311 TCCTTGTTGTTCGCCATGAAAT 59.110 40.909 0.00 0.00 38.60 2.17
1007 1132 0.674895 GAGCTCGGCATCCTTGTTGT 60.675 55.000 0.00 0.00 0.00 3.32
1194 1319 0.521735 GGCATTTGAGGACAACCGTC 59.478 55.000 0.00 0.00 41.83 4.79
1270 1395 1.017701 CCGGCTTACTTGGTCGAACC 61.018 60.000 0.00 0.00 39.22 3.62
1278 1403 1.482593 AGAGATGGACCGGCTTACTTG 59.517 52.381 0.00 0.00 0.00 3.16
1315 1440 0.819666 GGGCATCTTCCCCGTCAATC 60.820 60.000 0.00 0.00 40.51 2.67
1435 1560 1.893315 AATCCTGGATTTCCCGAGGA 58.107 50.000 16.15 7.85 42.44 3.71
1526 1651 7.781548 ATTAATTACACATTGTCTACCGACC 57.218 36.000 0.00 0.00 39.47 4.79
1623 1764 0.749818 TTTTCTGCAGGAACGTGCCA 60.750 50.000 16.99 0.00 43.28 4.92
1712 1853 0.454196 GAAGGTGAGAGGCTCGAGAC 59.546 60.000 18.75 15.26 32.35 3.36
1727 1868 1.137872 CATCCTGGAACGAGGAGAAGG 59.862 57.143 0.00 0.00 45.60 3.46
1750 1891 4.068599 GCCTCTTCAACTAGTTCTTGCTT 58.931 43.478 4.77 0.00 0.00 3.91
1751 1892 3.558109 GGCCTCTTCAACTAGTTCTTGCT 60.558 47.826 4.77 0.00 0.00 3.91
1839 1980 5.721960 ACTGACCCAGATATCAAAGTAGTGT 59.278 40.000 5.32 0.00 35.18 3.55
1848 1989 3.389002 CCATGTCACTGACCCAGATATCA 59.611 47.826 5.32 0.00 35.18 2.15
1955 2096 1.223763 GGGTGGAACTCCGGATTCC 59.776 63.158 26.31 26.31 44.02 3.01
2228 2428 8.915036 GTCACTTATTTTGAGATAGAGGGAGTA 58.085 37.037 0.00 0.00 0.00 2.59
2229 2429 7.621683 AGTCACTTATTTTGAGATAGAGGGAGT 59.378 37.037 0.00 0.00 0.00 3.85
2230 2430 8.017418 AGTCACTTATTTTGAGATAGAGGGAG 57.983 38.462 0.00 0.00 0.00 4.30
2231 2431 7.619698 TGAGTCACTTATTTTGAGATAGAGGGA 59.380 37.037 0.00 0.00 0.00 4.20
2232 2432 7.786030 TGAGTCACTTATTTTGAGATAGAGGG 58.214 38.462 0.00 0.00 0.00 4.30
2233 2433 9.092876 GTTGAGTCACTTATTTTGAGATAGAGG 57.907 37.037 0.00 0.00 0.00 3.69
2234 2434 9.868277 AGTTGAGTCACTTATTTTGAGATAGAG 57.132 33.333 0.00 0.00 0.00 2.43
2275 2475 9.123902 TGACTCAACTGTGTACTAACTTTAGTA 57.876 33.333 4.98 4.98 43.36 1.82
2276 2476 8.004087 TGACTCAACTGTGTACTAACTTTAGT 57.996 34.615 6.85 6.85 45.39 2.24
2277 2477 9.477484 AATGACTCAACTGTGTACTAACTTTAG 57.523 33.333 0.00 0.00 36.82 1.85
2278 2478 9.826574 AAATGACTCAACTGTGTACTAACTTTA 57.173 29.630 0.00 0.00 0.00 1.85
2279 2479 8.732746 AAATGACTCAACTGTGTACTAACTTT 57.267 30.769 0.00 0.00 0.00 2.66
2280 2480 9.998106 ATAAATGACTCAACTGTGTACTAACTT 57.002 29.630 0.00 0.00 0.00 2.66
2281 2481 9.998106 AATAAATGACTCAACTGTGTACTAACT 57.002 29.630 0.00 0.00 0.00 2.24
2285 2485 8.567948 CCAAAATAAATGACTCAACTGTGTACT 58.432 33.333 0.00 0.00 0.00 2.73
2286 2486 7.807907 CCCAAAATAAATGACTCAACTGTGTAC 59.192 37.037 0.00 0.00 0.00 2.90
2287 2487 7.721842 TCCCAAAATAAATGACTCAACTGTGTA 59.278 33.333 0.00 0.00 0.00 2.90
2288 2488 6.549364 TCCCAAAATAAATGACTCAACTGTGT 59.451 34.615 0.00 0.00 0.00 3.72
2289 2489 6.863126 GTCCCAAAATAAATGACTCAACTGTG 59.137 38.462 0.00 0.00 0.00 3.66
2290 2490 6.015434 GGTCCCAAAATAAATGACTCAACTGT 60.015 38.462 0.00 0.00 0.00 3.55
2291 2491 6.389906 GGTCCCAAAATAAATGACTCAACTG 58.610 40.000 0.00 0.00 0.00 3.16
2292 2492 5.183140 CGGTCCCAAAATAAATGACTCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2293 2493 5.182380 TCGGTCCCAAAATAAATGACTCAAC 59.818 40.000 0.00 0.00 0.00 3.18
2294 2494 5.317808 TCGGTCCCAAAATAAATGACTCAA 58.682 37.500 0.00 0.00 0.00 3.02
2295 2495 4.912586 TCGGTCCCAAAATAAATGACTCA 58.087 39.130 0.00 0.00 0.00 3.41
2296 2496 4.335594 CCTCGGTCCCAAAATAAATGACTC 59.664 45.833 0.00 0.00 0.00 3.36
2297 2497 4.018779 TCCTCGGTCCCAAAATAAATGACT 60.019 41.667 0.00 0.00 0.00 3.41
2298 2498 4.266714 TCCTCGGTCCCAAAATAAATGAC 58.733 43.478 0.00 0.00 0.00 3.06
2299 2499 4.577988 TCCTCGGTCCCAAAATAAATGA 57.422 40.909 0.00 0.00 0.00 2.57
2300 2500 4.705023 ACTTCCTCGGTCCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
2301 2501 4.930696 ACTTCCTCGGTCCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
2302 2502 4.376225 ACTTCCTCGGTCCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
2303 2503 5.045432 ACATACTTCCTCGGTCCCAAAATAA 60.045 40.000 0.00 0.00 0.00 1.40
2304 2504 4.472108 ACATACTTCCTCGGTCCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2305 2505 3.265995 ACATACTTCCTCGGTCCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2306 2506 2.640826 ACATACTTCCTCGGTCCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2307 2507 2.262637 ACATACTTCCTCGGTCCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2308 2508 1.946984 ACATACTTCCTCGGTCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
2309 2509 2.291735 TGTACATACTTCCTCGGTCCCA 60.292 50.000 0.00 0.00 0.00 4.37
2310 2510 2.381911 TGTACATACTTCCTCGGTCCC 58.618 52.381 0.00 0.00 0.00 4.46
2311 2511 3.446516 ACTTGTACATACTTCCTCGGTCC 59.553 47.826 0.00 0.00 0.00 4.46
2312 2512 4.157289 TCACTTGTACATACTTCCTCGGTC 59.843 45.833 0.00 0.00 0.00 4.79
2313 2513 4.084287 TCACTTGTACATACTTCCTCGGT 58.916 43.478 0.00 0.00 0.00 4.69
2314 2514 4.713824 TCACTTGTACATACTTCCTCGG 57.286 45.455 0.00 0.00 0.00 4.63
2315 2515 5.891451 TGATCACTTGTACATACTTCCTCG 58.109 41.667 0.00 0.00 0.00 4.63
2316 2516 6.535508 GGTTGATCACTTGTACATACTTCCTC 59.464 42.308 0.00 0.00 0.00 3.71
2317 2517 6.013725 TGGTTGATCACTTGTACATACTTCCT 60.014 38.462 0.00 0.00 0.00 3.36
2318 2518 6.092259 GTGGTTGATCACTTGTACATACTTCC 59.908 42.308 0.00 0.00 34.98 3.46
2319 2519 6.092259 GGTGGTTGATCACTTGTACATACTTC 59.908 42.308 0.00 0.00 37.75 3.01
2320 2520 5.938125 GGTGGTTGATCACTTGTACATACTT 59.062 40.000 0.00 0.00 37.75 2.24
2321 2521 5.248477 AGGTGGTTGATCACTTGTACATACT 59.752 40.000 0.00 0.00 37.75 2.12
2322 2522 5.488341 AGGTGGTTGATCACTTGTACATAC 58.512 41.667 0.00 0.00 37.75 2.39
2348 2550 2.284417 GCTACTTAAACGCGATGAAGGG 59.716 50.000 15.93 8.65 0.00 3.95
2352 2554 7.650504 ACATAATAAGCTACTTAAACGCGATGA 59.349 33.333 15.93 0.00 29.35 2.92
2419 2630 2.377310 CGAACAACGGTGCCTACGG 61.377 63.158 0.00 0.00 38.46 4.02
2430 2645 0.898326 AAATGGCCTCCCCGAACAAC 60.898 55.000 3.32 0.00 35.87 3.32
2459 2674 0.516524 GTTCTTCGATGTCGCGTTGC 60.517 55.000 5.77 0.00 39.60 4.17
2469 2684 1.556911 AGGTCAGCCATGTTCTTCGAT 59.443 47.619 0.00 0.00 37.19 3.59
2494 2709 2.297033 CCAGCAACTTGTAGCCAATGTT 59.703 45.455 0.00 0.00 0.00 2.71
2556 2771 0.252197 TCTCGTCCTCGATGGTCTCA 59.748 55.000 0.00 0.00 45.21 3.27
2563 2778 0.103208 GGTGCATTCTCGTCCTCGAT 59.897 55.000 0.00 0.00 45.21 3.59
2655 2870 0.859232 CTCCTTGTCGTTGTCGTTGG 59.141 55.000 0.00 0.00 38.33 3.77
2728 2943 3.417069 TGAGTTGGTGGATCGACAAAT 57.583 42.857 10.22 3.01 0.00 2.32
2729 2944 2.920724 TGAGTTGGTGGATCGACAAA 57.079 45.000 10.22 1.51 0.00 2.83
2740 3007 4.104102 TGTTCCTTAAGGTCATGAGTTGGT 59.896 41.667 21.04 0.00 36.34 3.67
2741 3008 4.651778 TGTTCCTTAAGGTCATGAGTTGG 58.348 43.478 21.04 0.00 36.34 3.77
2742 3009 5.530915 TGTTGTTCCTTAAGGTCATGAGTTG 59.469 40.000 21.04 0.00 36.34 3.16
2743 3010 5.690865 TGTTGTTCCTTAAGGTCATGAGTT 58.309 37.500 21.04 0.00 36.34 3.01
2744 3011 5.304686 TGTTGTTCCTTAAGGTCATGAGT 57.695 39.130 21.04 0.00 36.34 3.41
2745 3012 5.530915 TGTTGTTGTTCCTTAAGGTCATGAG 59.469 40.000 21.04 0.00 36.34 2.90
2746 3013 5.441500 TGTTGTTGTTCCTTAAGGTCATGA 58.558 37.500 21.04 8.52 36.34 3.07
2747 3014 5.766150 TGTTGTTGTTCCTTAAGGTCATG 57.234 39.130 21.04 0.00 36.34 3.07
2748 3015 5.220970 CGTTGTTGTTGTTCCTTAAGGTCAT 60.221 40.000 21.04 0.00 36.34 3.06
2749 3016 4.095185 CGTTGTTGTTGTTCCTTAAGGTCA 59.905 41.667 21.04 17.33 36.34 4.02
2750 3017 4.333372 TCGTTGTTGTTGTTCCTTAAGGTC 59.667 41.667 21.04 15.15 36.34 3.85
2751 3018 4.095334 GTCGTTGTTGTTGTTCCTTAAGGT 59.905 41.667 21.04 0.00 36.34 3.50
2752 3019 4.594136 GTCGTTGTTGTTGTTCCTTAAGG 58.406 43.478 15.98 15.98 0.00 2.69
2753 3020 4.033129 TCGTCGTTGTTGTTGTTCCTTAAG 59.967 41.667 0.00 0.00 0.00 1.85
2754 3021 3.931468 TCGTCGTTGTTGTTGTTCCTTAA 59.069 39.130 0.00 0.00 0.00 1.85
2755 3022 3.306703 GTCGTCGTTGTTGTTGTTCCTTA 59.693 43.478 0.00 0.00 0.00 2.69
2756 3023 2.094734 GTCGTCGTTGTTGTTGTTCCTT 59.905 45.455 0.00 0.00 0.00 3.36
2757 3024 1.662122 GTCGTCGTTGTTGTTGTTCCT 59.338 47.619 0.00 0.00 0.00 3.36
2758 3025 1.394227 TGTCGTCGTTGTTGTTGTTCC 59.606 47.619 0.00 0.00 0.00 3.62
2759 3026 2.791417 TGTCGTCGTTGTTGTTGTTC 57.209 45.000 0.00 0.00 0.00 3.18
2760 3027 2.159626 CCTTGTCGTCGTTGTTGTTGTT 60.160 45.455 0.00 0.00 0.00 2.83
2761 3028 1.395608 CCTTGTCGTCGTTGTTGTTGT 59.604 47.619 0.00 0.00 0.00 3.32
2762 3029 1.661617 TCCTTGTCGTCGTTGTTGTTG 59.338 47.619 0.00 0.00 0.00 3.33
2763 3030 1.931172 CTCCTTGTCGTCGTTGTTGTT 59.069 47.619 0.00 0.00 0.00 2.83
2764 3031 1.135527 TCTCCTTGTCGTCGTTGTTGT 59.864 47.619 0.00 0.00 0.00 3.32
2765 3032 1.847818 TCTCCTTGTCGTCGTTGTTG 58.152 50.000 0.00 0.00 0.00 3.33
2766 3033 2.100252 TCTTCTCCTTGTCGTCGTTGTT 59.900 45.455 0.00 0.00 0.00 2.83
2767 3034 1.679680 TCTTCTCCTTGTCGTCGTTGT 59.320 47.619 0.00 0.00 0.00 3.32
2768 3035 2.417339 TCTTCTCCTTGTCGTCGTTG 57.583 50.000 0.00 0.00 0.00 4.10
2769 3036 2.100252 TGTTCTTCTCCTTGTCGTCGTT 59.900 45.455 0.00 0.00 0.00 3.85
2770 3037 1.679680 TGTTCTTCTCCTTGTCGTCGT 59.320 47.619 0.00 0.00 0.00 4.34
2771 3038 2.031069 TCTGTTCTTCTCCTTGTCGTCG 60.031 50.000 0.00 0.00 0.00 5.12
2772 3039 3.644884 TCTGTTCTTCTCCTTGTCGTC 57.355 47.619 0.00 0.00 0.00 4.20
2773 3040 3.718815 GTTCTGTTCTTCTCCTTGTCGT 58.281 45.455 0.00 0.00 0.00 4.34
2774 3041 2.726760 CGTTCTGTTCTTCTCCTTGTCG 59.273 50.000 0.00 0.00 0.00 4.35
2775 3042 3.060602 CCGTTCTGTTCTTCTCCTTGTC 58.939 50.000 0.00 0.00 0.00 3.18
2776 3043 2.224305 CCCGTTCTGTTCTTCTCCTTGT 60.224 50.000 0.00 0.00 0.00 3.16
2777 3044 2.037251 TCCCGTTCTGTTCTTCTCCTTG 59.963 50.000 0.00 0.00 0.00 3.61
2778 3045 2.326428 TCCCGTTCTGTTCTTCTCCTT 58.674 47.619 0.00 0.00 0.00 3.36
2779 3046 2.011122 TCCCGTTCTGTTCTTCTCCT 57.989 50.000 0.00 0.00 0.00 3.69
2780 3047 3.263261 GAATCCCGTTCTGTTCTTCTCC 58.737 50.000 0.00 0.00 33.89 3.71
2781 3048 3.926616 TGAATCCCGTTCTGTTCTTCTC 58.073 45.455 0.00 0.00 37.72 2.87
2782 3049 4.559862 ATGAATCCCGTTCTGTTCTTCT 57.440 40.909 0.00 0.00 37.72 2.85
2783 3050 5.393962 CAAATGAATCCCGTTCTGTTCTTC 58.606 41.667 0.00 0.00 37.72 2.87
2784 3051 4.321230 GCAAATGAATCCCGTTCTGTTCTT 60.321 41.667 0.00 0.00 37.72 2.52
2785 3052 3.191371 GCAAATGAATCCCGTTCTGTTCT 59.809 43.478 0.00 0.00 37.72 3.01
2786 3053 3.191371 AGCAAATGAATCCCGTTCTGTTC 59.809 43.478 0.00 0.00 37.72 3.18
2787 3054 3.157087 AGCAAATGAATCCCGTTCTGTT 58.843 40.909 0.00 0.00 37.72 3.16
2788 3055 2.795329 AGCAAATGAATCCCGTTCTGT 58.205 42.857 0.00 0.00 37.72 3.41
2789 3056 3.855689 AAGCAAATGAATCCCGTTCTG 57.144 42.857 0.00 0.00 37.72 3.02
2790 3057 4.764823 TGTTAAGCAAATGAATCCCGTTCT 59.235 37.500 0.00 0.00 37.72 3.01
2791 3058 5.054390 TGTTAAGCAAATGAATCCCGTTC 57.946 39.130 0.00 0.00 37.35 3.95
2792 3059 5.659440 ATGTTAAGCAAATGAATCCCGTT 57.341 34.783 0.00 0.00 0.00 4.44
2793 3060 5.659440 AATGTTAAGCAAATGAATCCCGT 57.341 34.783 0.00 0.00 0.00 5.28
2794 3061 7.920151 TCAATAATGTTAAGCAAATGAATCCCG 59.080 33.333 0.00 0.00 0.00 5.14
2795 3062 9.598517 TTCAATAATGTTAAGCAAATGAATCCC 57.401 29.630 0.00 0.00 0.00 3.85
2811 3078 9.376075 GGATCGACTATGATCATTCAATAATGT 57.624 33.333 14.65 0.99 45.31 2.71
2812 3079 9.374838 TGGATCGACTATGATCATTCAATAATG 57.625 33.333 14.65 0.00 45.31 1.90
2813 3080 9.376075 GTGGATCGACTATGATCATTCAATAAT 57.624 33.333 14.65 1.49 45.31 1.28
2814 3081 7.819415 GGTGGATCGACTATGATCATTCAATAA 59.181 37.037 14.65 0.00 45.31 1.40
2815 3082 7.039082 TGGTGGATCGACTATGATCATTCAATA 60.039 37.037 14.65 0.00 45.31 1.90
2816 3083 6.169094 GGTGGATCGACTATGATCATTCAAT 58.831 40.000 14.65 0.00 45.31 2.57
2817 3084 5.070313 TGGTGGATCGACTATGATCATTCAA 59.930 40.000 14.65 0.00 45.31 2.69
2818 3085 4.588528 TGGTGGATCGACTATGATCATTCA 59.411 41.667 14.65 0.00 45.31 2.57
2819 3086 5.139435 TGGTGGATCGACTATGATCATTC 57.861 43.478 14.65 5.39 45.31 2.67
2820 3087 5.070981 AGTTGGTGGATCGACTATGATCATT 59.929 40.000 14.65 0.00 45.31 2.57
2821 3088 4.590647 AGTTGGTGGATCGACTATGATCAT 59.409 41.667 13.81 13.81 45.31 2.45
2822 3089 3.960755 AGTTGGTGGATCGACTATGATCA 59.039 43.478 7.84 0.00 45.31 2.92
2823 3090 4.038042 TGAGTTGGTGGATCGACTATGATC 59.962 45.833 7.84 1.75 43.26 2.92
2824 3091 3.960755 TGAGTTGGTGGATCGACTATGAT 59.039 43.478 7.84 0.00 31.90 2.45
2825 3092 3.361786 TGAGTTGGTGGATCGACTATGA 58.638 45.455 7.84 0.00 31.90 2.15
2826 3093 3.801114 TGAGTTGGTGGATCGACTATG 57.199 47.619 7.84 0.00 31.90 2.23
2827 3094 3.960755 TCATGAGTTGGTGGATCGACTAT 59.039 43.478 7.84 0.00 31.90 2.12
2828 3095 3.130516 GTCATGAGTTGGTGGATCGACTA 59.869 47.826 7.84 0.00 31.90 2.59
2829 3096 2.093973 GTCATGAGTTGGTGGATCGACT 60.094 50.000 7.84 0.00 34.28 4.18
2830 3097 2.271800 GTCATGAGTTGGTGGATCGAC 58.728 52.381 0.00 0.00 0.00 4.20
2831 3098 1.207089 GGTCATGAGTTGGTGGATCGA 59.793 52.381 0.00 0.00 0.00 3.59
2832 3099 1.656652 GGTCATGAGTTGGTGGATCG 58.343 55.000 0.00 0.00 0.00 3.69
2833 3100 1.561542 AGGGTCATGAGTTGGTGGATC 59.438 52.381 0.00 0.00 0.00 3.36
2834 3101 1.673767 AGGGTCATGAGTTGGTGGAT 58.326 50.000 0.00 0.00 0.00 3.41
2835 3102 1.444933 AAGGGTCATGAGTTGGTGGA 58.555 50.000 0.00 0.00 0.00 4.02
2836 3103 3.054434 TGATAAGGGTCATGAGTTGGTGG 60.054 47.826 0.00 0.00 0.00 4.61
2837 3104 4.220693 TGATAAGGGTCATGAGTTGGTG 57.779 45.455 0.00 0.00 0.00 4.17
2921 3188 7.807433 CCTTCTGATATTCTCATCGTAGTTCAG 59.193 40.741 0.00 0.00 32.10 3.02
2923 3190 7.877003 TCCTTCTGATATTCTCATCGTAGTTC 58.123 38.462 0.00 0.00 32.10 3.01
2929 3196 8.049655 TCTGTATCCTTCTGATATTCTCATCG 57.950 38.462 0.00 0.00 38.21 3.84
2968 3235 2.598565 CCCTCTTCCATGTATCCTCGA 58.401 52.381 0.00 0.00 0.00 4.04
2970 3237 2.370189 CACCCCTCTTCCATGTATCCTC 59.630 54.545 0.00 0.00 0.00 3.71
2974 3241 1.212935 GCACACCCCTCTTCCATGTAT 59.787 52.381 0.00 0.00 0.00 2.29
2983 3250 2.681778 CTCCTCGCACACCCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
2992 3259 2.892640 CAATCGGGTCTCCTCGCA 59.107 61.111 0.00 0.00 0.00 5.10
3124 3391 7.121020 TGATAAGATCAATTAGCAACAGTGCAA 59.879 33.333 1.01 0.00 44.37 4.08
3125 3392 6.598850 TGATAAGATCAATTAGCAACAGTGCA 59.401 34.615 1.01 0.00 44.37 4.57
3126 3393 7.019774 TGATAAGATCAATTAGCAACAGTGC 57.980 36.000 0.00 0.00 43.17 4.40
3251 3518 7.451566 AGCTGTTTGTTAATGTAAGAGGGAAAT 59.548 33.333 0.00 0.00 0.00 2.17
3310 3577 1.462283 CTTGACTGACGTCTGCAATGG 59.538 52.381 20.88 11.46 40.86 3.16
3335 3602 5.621197 TGGCTGTTGTGTAATGTAATGAC 57.379 39.130 0.00 0.00 0.00 3.06
3338 3605 6.588719 AACATGGCTGTTGTGTAATGTAAT 57.411 33.333 0.00 0.00 43.92 1.89
3350 3617 1.417145 ACCATTTGCAACATGGCTGTT 59.583 42.857 26.88 13.84 46.54 3.16
3351 3618 1.050204 ACCATTTGCAACATGGCTGT 58.950 45.000 26.88 14.09 44.69 4.40
3352 3619 1.434555 CACCATTTGCAACATGGCTG 58.565 50.000 26.88 21.76 44.69 4.85
3353 3620 3.919163 CACCATTTGCAACATGGCT 57.081 47.368 26.88 17.41 44.69 4.75
3363 3630 3.925913 CCGGTCAATTTTAGCACCATTTG 59.074 43.478 0.00 0.00 0.00 2.32
3364 3631 3.616317 GCCGGTCAATTTTAGCACCATTT 60.616 43.478 1.90 0.00 0.00 2.32
3365 3632 2.094234 GCCGGTCAATTTTAGCACCATT 60.094 45.455 1.90 0.00 0.00 3.16
3366 3633 1.476488 GCCGGTCAATTTTAGCACCAT 59.524 47.619 1.90 0.00 0.00 3.55
3367 3634 0.885196 GCCGGTCAATTTTAGCACCA 59.115 50.000 1.90 0.00 0.00 4.17
3368 3635 0.885196 TGCCGGTCAATTTTAGCACC 59.115 50.000 1.90 0.00 0.00 5.01
3369 3636 2.939460 ATGCCGGTCAATTTTAGCAC 57.061 45.000 1.90 0.00 32.26 4.40
3370 3637 2.353269 CGTATGCCGGTCAATTTTAGCA 59.647 45.455 1.90 0.00 34.28 3.49
3371 3638 2.610374 TCGTATGCCGGTCAATTTTAGC 59.390 45.455 1.90 0.00 37.11 3.09
3372 3639 4.509970 TCATCGTATGCCGGTCAATTTTAG 59.490 41.667 1.90 0.00 37.11 1.85
3373 3640 4.443621 TCATCGTATGCCGGTCAATTTTA 58.556 39.130 1.90 0.00 37.11 1.52
3374 3641 3.275143 TCATCGTATGCCGGTCAATTTT 58.725 40.909 1.90 0.00 37.11 1.82
3375 3642 2.872245 CTCATCGTATGCCGGTCAATTT 59.128 45.455 1.90 0.00 37.11 1.82
3376 3643 2.483876 CTCATCGTATGCCGGTCAATT 58.516 47.619 1.90 0.00 37.11 2.32
3389 3656 2.711922 GGCCAGACGTCCTCATCGT 61.712 63.158 13.01 0.00 44.27 3.73
3403 3670 2.031919 CCGTGTAAGTGCTGGCCA 59.968 61.111 4.71 4.71 0.00 5.36
3442 3710 8.240682 GCACTATCATCACGACTCTTATAATCT 58.759 37.037 0.00 0.00 0.00 2.40
3443 3711 8.023706 TGCACTATCATCACGACTCTTATAATC 58.976 37.037 0.00 0.00 0.00 1.75
3444 3712 7.886338 TGCACTATCATCACGACTCTTATAAT 58.114 34.615 0.00 0.00 0.00 1.28
3445 3713 7.272037 TGCACTATCATCACGACTCTTATAA 57.728 36.000 0.00 0.00 0.00 0.98
3446 3714 6.877611 TGCACTATCATCACGACTCTTATA 57.122 37.500 0.00 0.00 0.00 0.98
3447 3715 5.774498 TGCACTATCATCACGACTCTTAT 57.226 39.130 0.00 0.00 0.00 1.73
3498 3766 7.859613 AATGAGATACTAATTGTCGTCATCG 57.140 36.000 0.00 0.00 38.55 3.84
3513 3781 7.148474 TGTGCCGTCTTAAGAAAAATGAGATAC 60.148 37.037 6.78 0.00 0.00 2.24
3635 3903 2.902705 TTATGTCCGGCTCATACCAC 57.097 50.000 15.33 0.00 0.00 4.16
3641 3909 1.153449 CGCCTTTATGTCCGGCTCA 60.153 57.895 0.00 0.00 41.61 4.26
3643 3911 2.189521 CCGCCTTTATGTCCGGCT 59.810 61.111 0.00 0.00 41.61 5.52
3645 3913 3.269347 CGCCGCCTTTATGTCCGG 61.269 66.667 0.00 0.00 43.38 5.14
3666 3934 1.162181 CCATGGTGGTATGCGAGCTG 61.162 60.000 2.57 0.00 31.35 4.24
3671 3939 2.595095 ACCCCATGGTGGTATGCG 59.405 61.111 19.92 0.00 45.58 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.