Multiple sequence alignment - TraesCS6A01G003500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G003500 chr6A 100.000 2547 0 0 1 2547 1623499 1626045 0.000000e+00 4704.0
1 TraesCS6A01G003500 chr6A 95.990 1247 47 2 1 1245 1589064 1590309 0.000000e+00 2023.0
2 TraesCS6A01G003500 chr6A 95.799 738 23 3 1236 1966 1590368 1591104 0.000000e+00 1184.0
3 TraesCS6A01G003500 chr6A 86.942 605 71 6 8 606 67143859 67143257 0.000000e+00 673.0
4 TraesCS6A01G003500 chr6A 84.853 614 84 7 1 607 493693507 493692896 6.020000e-171 610.0
5 TraesCS6A01G003500 chr6A 98.113 212 4 0 2196 2407 1630529 1630740 1.110000e-98 370.0
6 TraesCS6A01G003500 chr6A 75.369 203 40 7 2352 2547 603384377 603384178 3.490000e-14 89.8
7 TraesCS6A01G003500 chr6B 89.977 1287 102 14 644 1917 234451 235723 0.000000e+00 1637.0
8 TraesCS6A01G003500 chr6B 89.907 1288 101 16 644 1917 226865 228137 0.000000e+00 1631.0
9 TraesCS6A01G003500 chr6B 89.899 1287 103 14 644 1917 236674 237946 0.000000e+00 1631.0
10 TraesCS6A01G003500 chr6B 89.821 1287 102 16 644 1917 230008 231278 0.000000e+00 1624.0
11 TraesCS6A01G003500 chr6B 89.821 1287 102 16 644 1917 232229 233499 0.000000e+00 1624.0
12 TraesCS6A01G003500 chr6B 90.883 691 45 12 644 1332 229088 229762 0.000000e+00 911.0
13 TraesCS6A01G003500 chr6B 94.265 558 28 4 642 1198 243834 244388 0.000000e+00 850.0
14 TraesCS6A01G003500 chr6B 83.183 666 85 19 1259 1901 185597 186258 3.650000e-163 584.0
15 TraesCS6A01G003500 chr6B 86.454 251 18 6 1952 2195 231249 231490 6.990000e-66 261.0
16 TraesCS6A01G003500 chr6B 86.454 251 18 6 1952 2195 233470 233711 6.990000e-66 261.0
17 TraesCS6A01G003500 chr6B 86.056 251 19 6 1952 2195 228108 228349 3.250000e-64 255.0
18 TraesCS6A01G003500 chr6B 85.657 251 20 6 1952 2195 225885 226126 1.510000e-62 250.0
19 TraesCS6A01G003500 chr6B 86.325 234 24 3 1692 1917 225681 225914 5.440000e-62 248.0
20 TraesCS6A01G003500 chr6B 83.784 148 15 7 2048 2195 186766 186904 5.720000e-27 132.0
21 TraesCS6A01G003500 chr6B 76.847 203 37 9 2352 2547 690556915 690556716 3.470000e-19 106.0
22 TraesCS6A01G003500 chr6D 92.178 652 44 1 1273 1917 2439301 2439952 0.000000e+00 915.0
23 TraesCS6A01G003500 chr6D 94.867 565 24 5 642 1204 2438723 2439284 0.000000e+00 878.0
24 TraesCS6A01G003500 chr6D 84.951 206 20 4 2196 2395 471309035 471308835 5.560000e-47 198.0
25 TraesCS6A01G003500 chr2B 88.686 601 59 6 10 605 76491966 76491370 0.000000e+00 725.0
26 TraesCS6A01G003500 chr2B 86.422 545 65 6 1 544 380247579 380248115 2.820000e-164 588.0
27 TraesCS6A01G003500 chr7A 89.286 560 54 3 1 555 627003683 627003125 0.000000e+00 697.0
28 TraesCS6A01G003500 chr5D 87.624 606 66 6 8 606 449294816 449295419 0.000000e+00 695.0
29 TraesCS6A01G003500 chr7B 87.698 569 59 8 50 607 64422746 64423314 0.000000e+00 652.0
30 TraesCS6A01G003500 chrUn 84.528 614 84 7 1 607 89842487 89843096 4.690000e-167 597.0
31 TraesCS6A01G003500 chrUn 78.818 203 33 8 2352 2547 90098781 90098582 7.400000e-26 128.0
32 TraesCS6A01G003500 chr3B 85.833 360 36 7 2196 2547 130188466 130188818 4.000000e-98 368.0
33 TraesCS6A01G003500 chr3B 81.166 223 22 15 2196 2407 130193307 130193520 7.290000e-36 161.0
34 TraesCS6A01G003500 chr3B 76.355 203 38 9 2352 2547 32524609 32524808 1.610000e-17 100.0
35 TraesCS6A01G003500 chr5B 77.000 200 39 7 2352 2547 374429844 374430040 9.640000e-20 108.0
36 TraesCS6A01G003500 chr3A 77.000 200 39 6 2352 2547 706407396 706407592 9.640000e-20 108.0
37 TraesCS6A01G003500 chr2A 77.515 169 31 6 2352 2516 47665594 47665429 7.500000e-16 95.3
38 TraesCS6A01G003500 chr1A 75.980 204 37 10 2352 2547 10090262 10090461 7.500000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G003500 chr6A 1623499 1626045 2546 False 4704.000000 4704 100.000000 1 2547 1 chr6A.!!$F1 2546
1 TraesCS6A01G003500 chr6A 1589064 1591104 2040 False 1603.500000 2023 95.894500 1 1966 2 chr6A.!!$F3 1965
2 TraesCS6A01G003500 chr6A 67143257 67143859 602 True 673.000000 673 86.942000 8 606 1 chr6A.!!$R1 598
3 TraesCS6A01G003500 chr6A 493692896 493693507 611 True 610.000000 610 84.853000 1 607 1 chr6A.!!$R2 606
4 TraesCS6A01G003500 chr6B 225681 237946 12265 False 939.363636 1637 88.295818 644 2195 11 chr6B.!!$F3 1551
5 TraesCS6A01G003500 chr6B 243834 244388 554 False 850.000000 850 94.265000 642 1198 1 chr6B.!!$F1 556
6 TraesCS6A01G003500 chr6B 185597 186904 1307 False 358.000000 584 83.483500 1259 2195 2 chr6B.!!$F2 936
7 TraesCS6A01G003500 chr6D 2438723 2439952 1229 False 896.500000 915 93.522500 642 1917 2 chr6D.!!$F1 1275
8 TraesCS6A01G003500 chr2B 76491370 76491966 596 True 725.000000 725 88.686000 10 605 1 chr2B.!!$R1 595
9 TraesCS6A01G003500 chr2B 380247579 380248115 536 False 588.000000 588 86.422000 1 544 1 chr2B.!!$F1 543
10 TraesCS6A01G003500 chr7A 627003125 627003683 558 True 697.000000 697 89.286000 1 555 1 chr7A.!!$R1 554
11 TraesCS6A01G003500 chr5D 449294816 449295419 603 False 695.000000 695 87.624000 8 606 1 chr5D.!!$F1 598
12 TraesCS6A01G003500 chr7B 64422746 64423314 568 False 652.000000 652 87.698000 50 607 1 chr7B.!!$F1 557
13 TraesCS6A01G003500 chrUn 89842487 89843096 609 False 597.000000 597 84.528000 1 607 1 chrUn.!!$F1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 420 1.16527 GTTAGGCTTGGTGCGATGTT 58.835 50.0 0.0 0.0 44.05 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2324 13214 0.035439 ATGGTTACAGGAGGTTGGCG 60.035 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 2.052690 CGAGGGACCAGTGGACGAT 61.053 63.158 18.40 1.00 0.00 3.73
119 121 5.928264 CGATGCTTCATCCTACACATTGATA 59.072 40.000 0.08 0.00 37.57 2.15
362 365 2.504274 GGTGTGTGACCCAGTCCGA 61.504 63.158 0.00 0.00 39.10 4.55
416 420 1.165270 GTTAGGCTTGGTGCGATGTT 58.835 50.000 0.00 0.00 44.05 2.71
525 533 8.495949 CAAACAGATGTACTACTTTGTAAGGTG 58.504 37.037 0.00 0.00 0.00 4.00
831 4515 7.861629 TGAGGGTTCATATTATGGGATGATAC 58.138 38.462 3.89 0.00 32.27 2.24
970 4656 3.144506 CAACCAAAGTGATCTGAGTGCT 58.855 45.455 0.00 0.00 0.00 4.40
1198 7105 2.418628 TCGAAGGCCTTTCTATTTTGCG 59.581 45.455 21.54 14.93 33.44 4.85
1654 9853 1.308047 TACACTGCAGCAGTTGTTGG 58.692 50.000 26.16 16.11 42.59 3.77
1678 9877 6.223120 GTGAGTATTTTGGTTTGGCAAATCT 58.777 36.000 22.67 6.38 0.00 2.40
1714 12136 0.962356 AGCAATTGTTGGGAGAGCGG 60.962 55.000 7.40 0.00 0.00 5.52
1726 12148 1.205893 GGAGAGCGGTGAAATGACTCT 59.794 52.381 0.00 0.00 40.33 3.24
1777 12199 5.067936 GTGGTACAGCTTAGCTTGAGATCTA 59.932 44.000 3.00 0.00 41.80 1.98
1891 12333 1.001406 CACGGCTCCTCTCTTCAAGTT 59.999 52.381 0.00 0.00 0.00 2.66
1909 12351 0.539518 TTCATCGATCTTCCCCGCAA 59.460 50.000 0.00 0.00 0.00 4.85
1911 12353 1.065782 TCATCGATCTTCCCCGCAAAA 60.066 47.619 0.00 0.00 0.00 2.44
1912 12354 1.331756 CATCGATCTTCCCCGCAAAAG 59.668 52.381 0.00 0.00 0.00 2.27
1913 12355 0.611200 TCGATCTTCCCCGCAAAAGA 59.389 50.000 0.00 0.00 36.05 2.52
1914 12356 1.002659 TCGATCTTCCCCGCAAAAGAA 59.997 47.619 0.00 0.00 35.29 2.52
1915 12357 1.810151 CGATCTTCCCCGCAAAAGAAA 59.190 47.619 0.00 0.00 35.29 2.52
1916 12358 2.227865 CGATCTTCCCCGCAAAAGAAAA 59.772 45.455 0.00 0.00 35.29 2.29
1917 12359 3.670627 CGATCTTCCCCGCAAAAGAAAAG 60.671 47.826 0.00 0.00 35.29 2.27
1918 12360 2.661718 TCTTCCCCGCAAAAGAAAAGT 58.338 42.857 0.00 0.00 0.00 2.66
1919 12361 2.621526 TCTTCCCCGCAAAAGAAAAGTC 59.378 45.455 0.00 0.00 0.00 3.01
1920 12362 1.324383 TCCCCGCAAAAGAAAAGTCC 58.676 50.000 0.00 0.00 0.00 3.85
1921 12363 1.036707 CCCCGCAAAAGAAAAGTCCA 58.963 50.000 0.00 0.00 0.00 4.02
1922 12364 1.618343 CCCCGCAAAAGAAAAGTCCAT 59.382 47.619 0.00 0.00 0.00 3.41
1923 12365 2.352715 CCCCGCAAAAGAAAAGTCCATC 60.353 50.000 0.00 0.00 0.00 3.51
1924 12366 2.584791 CCGCAAAAGAAAAGTCCATCG 58.415 47.619 0.00 0.00 0.00 3.84
1925 12367 2.225491 CCGCAAAAGAAAAGTCCATCGA 59.775 45.455 0.00 0.00 0.00 3.59
1926 12368 3.119849 CCGCAAAAGAAAAGTCCATCGAT 60.120 43.478 0.00 0.00 0.00 3.59
1927 12369 4.091424 CGCAAAAGAAAAGTCCATCGATC 58.909 43.478 0.00 0.00 0.00 3.69
1928 12370 4.142816 CGCAAAAGAAAAGTCCATCGATCT 60.143 41.667 0.00 0.00 0.00 2.75
1929 12371 5.327891 GCAAAAGAAAAGTCCATCGATCTC 58.672 41.667 0.00 0.00 0.00 2.75
1930 12372 5.674820 GCAAAAGAAAAGTCCATCGATCTCC 60.675 44.000 0.00 0.00 0.00 3.71
1931 12373 3.828875 AGAAAAGTCCATCGATCTCCC 57.171 47.619 0.00 0.00 0.00 4.30
1932 12374 3.107601 AGAAAAGTCCATCGATCTCCCA 58.892 45.455 0.00 0.00 0.00 4.37
1933 12375 3.713764 AGAAAAGTCCATCGATCTCCCAT 59.286 43.478 0.00 0.00 0.00 4.00
1934 12376 3.482156 AAAGTCCATCGATCTCCCATG 57.518 47.619 0.00 0.00 0.00 3.66
1935 12377 0.683973 AGTCCATCGATCTCCCATGC 59.316 55.000 0.00 0.00 0.00 4.06
1936 12378 0.394192 GTCCATCGATCTCCCATGCA 59.606 55.000 0.00 0.00 0.00 3.96
1937 12379 0.394192 TCCATCGATCTCCCATGCAC 59.606 55.000 0.00 0.00 0.00 4.57
1938 12380 0.107268 CCATCGATCTCCCATGCACA 59.893 55.000 0.00 0.00 0.00 4.57
1939 12381 1.475571 CCATCGATCTCCCATGCACAA 60.476 52.381 0.00 0.00 0.00 3.33
1940 12382 2.501261 CATCGATCTCCCATGCACAAT 58.499 47.619 0.00 0.00 0.00 2.71
1941 12383 3.557686 CCATCGATCTCCCATGCACAATA 60.558 47.826 0.00 0.00 0.00 1.90
1942 12384 3.836365 TCGATCTCCCATGCACAATAA 57.164 42.857 0.00 0.00 0.00 1.40
1943 12385 4.149511 TCGATCTCCCATGCACAATAAA 57.850 40.909 0.00 0.00 0.00 1.40
1944 12386 4.522114 TCGATCTCCCATGCACAATAAAA 58.478 39.130 0.00 0.00 0.00 1.52
1945 12387 5.132502 TCGATCTCCCATGCACAATAAAAT 58.867 37.500 0.00 0.00 0.00 1.82
1950 12392 9.768662 GATCTCCCATGCACAATAAAATAAAAT 57.231 29.630 0.00 0.00 0.00 1.82
1971 12413 2.388526 AGTCCATCGATCTCCCATGA 57.611 50.000 0.00 0.00 0.00 3.07
2004 12894 8.749841 AATAAAATAAGTCCATCGATCTCTCG 57.250 34.615 0.00 0.00 46.41 4.04
2005 12895 3.840890 ATAAGTCCATCGATCTCTCGC 57.159 47.619 0.00 0.00 44.65 5.03
2007 12897 1.686355 AGTCCATCGATCTCTCGCTT 58.314 50.000 0.00 0.00 44.65 4.68
2008 12898 2.852449 AGTCCATCGATCTCTCGCTTA 58.148 47.619 0.00 0.00 44.65 3.09
2009 12899 3.215151 AGTCCATCGATCTCTCGCTTAA 58.785 45.455 0.00 0.00 44.65 1.85
2010 12900 3.632604 AGTCCATCGATCTCTCGCTTAAA 59.367 43.478 0.00 0.00 44.65 1.52
2011 12901 4.098044 AGTCCATCGATCTCTCGCTTAAAA 59.902 41.667 0.00 0.00 44.65 1.52
2012 12902 4.804139 GTCCATCGATCTCTCGCTTAAAAA 59.196 41.667 0.00 0.00 44.65 1.94
2040 12930 0.846015 TGGCTATGGATGAACAGGGG 59.154 55.000 0.00 0.00 0.00 4.79
2041 12931 1.140312 GGCTATGGATGAACAGGGGA 58.860 55.000 0.00 0.00 0.00 4.81
2042 12932 1.072965 GGCTATGGATGAACAGGGGAG 59.927 57.143 0.00 0.00 0.00 4.30
2043 12933 1.072965 GCTATGGATGAACAGGGGAGG 59.927 57.143 0.00 0.00 0.00 4.30
2044 12934 1.072965 CTATGGATGAACAGGGGAGGC 59.927 57.143 0.00 0.00 0.00 4.70
2045 12935 1.649271 ATGGATGAACAGGGGAGGCC 61.649 60.000 0.00 0.00 0.00 5.19
2046 12936 2.190578 GATGAACAGGGGAGGCCG 59.809 66.667 0.00 0.00 0.00 6.13
2047 12937 4.115199 ATGAACAGGGGAGGCCGC 62.115 66.667 0.00 0.00 36.67 6.53
2057 12947 4.344865 GAGGCCGCCCTTGACCAA 62.345 66.667 5.55 0.00 43.12 3.67
2058 12948 3.645268 GAGGCCGCCCTTGACCAAT 62.645 63.158 5.55 0.00 43.12 3.16
2062 12952 0.179018 GCCGCCCTTGACCAATATCT 60.179 55.000 0.00 0.00 0.00 1.98
2109 12999 2.705658 TCATGGAGGGTTTCGCATCTAT 59.294 45.455 0.00 0.00 0.00 1.98
2110 13000 2.910688 TGGAGGGTTTCGCATCTATC 57.089 50.000 0.00 0.00 0.00 2.08
2112 13002 1.694696 GGAGGGTTTCGCATCTATCCT 59.305 52.381 0.00 0.00 0.00 3.24
2113 13003 2.548920 GGAGGGTTTCGCATCTATCCTG 60.549 54.545 0.00 0.00 0.00 3.86
2114 13004 1.202698 AGGGTTTCGCATCTATCCTGC 60.203 52.381 0.00 0.00 36.26 4.85
2115 13005 1.230324 GGTTTCGCATCTATCCTGCC 58.770 55.000 0.00 0.00 36.24 4.85
2116 13006 1.202698 GGTTTCGCATCTATCCTGCCT 60.203 52.381 0.00 0.00 36.24 4.75
2117 13007 2.139118 GTTTCGCATCTATCCTGCCTC 58.861 52.381 0.00 0.00 36.24 4.70
2118 13008 0.315251 TTCGCATCTATCCTGCCTCG 59.685 55.000 0.00 0.00 36.24 4.63
2121 13011 0.676184 GCATCTATCCTGCCTCGTGA 59.324 55.000 0.00 0.00 33.44 4.35
2128 13018 1.214062 CCTGCCTCGTGACTCTCAC 59.786 63.158 0.00 0.00 43.65 3.51
2138 13028 3.384014 GACTCTCACGAGGCGTCCG 62.384 68.421 0.00 0.00 41.71 4.79
2139 13029 4.180946 CTCTCACGAGGCGTCCGG 62.181 72.222 0.00 0.00 38.32 5.14
2142 13032 3.966026 CTCACGAGGCGTCCGGTTC 62.966 68.421 0.00 0.00 38.32 3.62
2153 13043 0.321387 GTCCGGTTCTTGTCTTCCCC 60.321 60.000 0.00 0.00 0.00 4.81
2157 13047 1.071699 CGGTTCTTGTCTTCCCCAAGA 59.928 52.381 0.00 0.00 44.83 3.02
2160 13050 3.244911 GGTTCTTGTCTTCCCCAAGATCA 60.245 47.826 3.91 0.00 45.55 2.92
2162 13052 2.028112 TCTTGTCTTCCCCAAGATCACG 60.028 50.000 0.00 0.00 42.43 4.35
2202 13092 3.713936 GGCCTTGGCGATGTTAAAC 57.286 52.632 5.49 0.00 0.00 2.01
2203 13093 0.885196 GGCCTTGGCGATGTTAAACA 59.115 50.000 5.49 0.00 0.00 2.83
2204 13094 1.476488 GGCCTTGGCGATGTTAAACAT 59.524 47.619 5.49 0.00 42.43 2.71
2205 13095 2.529151 GCCTTGGCGATGTTAAACATG 58.471 47.619 0.00 0.00 39.27 3.21
2206 13096 2.094752 GCCTTGGCGATGTTAAACATGT 60.095 45.455 0.00 0.00 39.27 3.21
2207 13097 3.127895 GCCTTGGCGATGTTAAACATGTA 59.872 43.478 0.00 0.00 39.27 2.29
2208 13098 4.380023 GCCTTGGCGATGTTAAACATGTAA 60.380 41.667 0.00 0.00 39.27 2.41
2209 13099 5.092781 CCTTGGCGATGTTAAACATGTAAC 58.907 41.667 0.00 1.08 39.27 2.50
2210 13100 5.335269 CCTTGGCGATGTTAAACATGTAACA 60.335 40.000 14.83 14.83 45.49 2.41
2242 13132 7.958053 GGTATTGTATAAACCGTATTCTGCT 57.042 36.000 0.00 0.00 0.00 4.24
2243 13133 8.374327 GGTATTGTATAAACCGTATTCTGCTT 57.626 34.615 0.00 0.00 0.00 3.91
2244 13134 8.280497 GGTATTGTATAAACCGTATTCTGCTTG 58.720 37.037 0.00 0.00 0.00 4.01
2245 13135 7.859325 ATTGTATAAACCGTATTCTGCTTGT 57.141 32.000 0.00 0.00 0.00 3.16
2246 13136 8.951787 ATTGTATAAACCGTATTCTGCTTGTA 57.048 30.769 0.00 0.00 0.00 2.41
2247 13137 8.774890 TTGTATAAACCGTATTCTGCTTGTAA 57.225 30.769 0.00 0.00 0.00 2.41
2248 13138 8.188531 TGTATAAACCGTATTCTGCTTGTAAC 57.811 34.615 0.00 0.00 0.00 2.50
2249 13139 4.657075 AAACCGTATTCTGCTTGTAACG 57.343 40.909 0.00 0.00 0.00 3.18
2250 13140 3.581024 ACCGTATTCTGCTTGTAACGA 57.419 42.857 0.00 0.00 32.35 3.85
2251 13141 4.119442 ACCGTATTCTGCTTGTAACGAT 57.881 40.909 0.00 0.00 32.35 3.73
2252 13142 5.252969 ACCGTATTCTGCTTGTAACGATA 57.747 39.130 0.00 0.00 32.35 2.92
2253 13143 5.279384 ACCGTATTCTGCTTGTAACGATAG 58.721 41.667 0.00 0.00 46.19 2.08
2254 13144 5.066893 ACCGTATTCTGCTTGTAACGATAGA 59.933 40.000 0.00 0.00 41.38 1.98
2255 13145 5.625721 CCGTATTCTGCTTGTAACGATAGAG 59.374 44.000 0.00 0.00 41.38 2.43
2256 13146 5.115773 CGTATTCTGCTTGTAACGATAGAGC 59.884 44.000 0.00 0.00 41.38 4.09
2257 13147 4.720649 TTCTGCTTGTAACGATAGAGCT 57.279 40.909 8.72 0.00 41.38 4.09
2258 13148 5.830000 TTCTGCTTGTAACGATAGAGCTA 57.170 39.130 8.72 0.00 41.38 3.32
2259 13149 5.425577 TCTGCTTGTAACGATAGAGCTAG 57.574 43.478 8.72 0.00 41.38 3.42
2260 13150 3.966154 TGCTTGTAACGATAGAGCTAGC 58.034 45.455 6.62 6.62 41.38 3.42
2262 13152 3.303857 GCTTGTAACGATAGAGCTAGCGA 60.304 47.826 20.25 0.00 46.56 4.93
2263 13153 4.614078 GCTTGTAACGATAGAGCTAGCGAT 60.614 45.833 20.25 11.91 46.56 4.58
2264 13154 5.390673 GCTTGTAACGATAGAGCTAGCGATA 60.391 44.000 20.25 10.95 46.56 2.92
2265 13155 6.549912 TTGTAACGATAGAGCTAGCGATAA 57.450 37.500 20.25 7.74 46.56 1.75
2266 13156 6.166911 TGTAACGATAGAGCTAGCGATAAG 57.833 41.667 20.25 7.60 46.56 1.73
2267 13157 4.688511 AACGATAGAGCTAGCGATAAGG 57.311 45.455 20.25 1.70 46.56 2.69
2268 13158 3.940319 ACGATAGAGCTAGCGATAAGGA 58.060 45.455 20.25 0.00 46.56 3.36
2269 13159 4.519213 ACGATAGAGCTAGCGATAAGGAT 58.481 43.478 20.25 0.00 46.56 3.24
2270 13160 4.944930 ACGATAGAGCTAGCGATAAGGATT 59.055 41.667 20.25 0.00 46.56 3.01
2271 13161 6.114089 ACGATAGAGCTAGCGATAAGGATTA 58.886 40.000 20.25 0.00 46.56 1.75
2272 13162 6.259167 ACGATAGAGCTAGCGATAAGGATTAG 59.741 42.308 20.25 0.00 46.56 1.73
2273 13163 6.259167 CGATAGAGCTAGCGATAAGGATTAGT 59.741 42.308 9.55 0.00 46.56 2.24
2274 13164 7.438757 CGATAGAGCTAGCGATAAGGATTAGTA 59.561 40.741 9.55 0.00 46.56 1.82
2275 13165 9.280174 GATAGAGCTAGCGATAAGGATTAGTAT 57.720 37.037 9.55 0.00 31.76 2.12
2276 13166 7.948034 AGAGCTAGCGATAAGGATTAGTATT 57.052 36.000 9.55 0.00 31.76 1.89
2277 13167 8.356000 AGAGCTAGCGATAAGGATTAGTATTT 57.644 34.615 9.55 0.00 31.76 1.40
2278 13168 8.247562 AGAGCTAGCGATAAGGATTAGTATTTG 58.752 37.037 9.55 0.00 31.76 2.32
2279 13169 7.897864 AGCTAGCGATAAGGATTAGTATTTGT 58.102 34.615 9.55 0.00 31.76 2.83
2280 13170 8.368668 AGCTAGCGATAAGGATTAGTATTTGTT 58.631 33.333 9.55 0.00 31.76 2.83
2281 13171 8.436200 GCTAGCGATAAGGATTAGTATTTGTTG 58.564 37.037 0.00 0.00 31.76 3.33
2282 13172 9.692749 CTAGCGATAAGGATTAGTATTTGTTGA 57.307 33.333 0.00 0.00 31.76 3.18
2283 13173 8.594881 AGCGATAAGGATTAGTATTTGTTGAG 57.405 34.615 0.00 0.00 31.76 3.02
2284 13174 8.421784 AGCGATAAGGATTAGTATTTGTTGAGA 58.578 33.333 0.00 0.00 31.76 3.27
2285 13175 9.209175 GCGATAAGGATTAGTATTTGTTGAGAT 57.791 33.333 0.00 0.00 31.76 2.75
2296 13186 8.237811 AGTATTTGTTGAGATTTCTTGGTTGT 57.762 30.769 0.00 0.00 0.00 3.32
2297 13187 8.695456 AGTATTTGTTGAGATTTCTTGGTTGTT 58.305 29.630 0.00 0.00 0.00 2.83
2298 13188 7.775397 ATTTGTTGAGATTTCTTGGTTGTTG 57.225 32.000 0.00 0.00 0.00 3.33
2299 13189 6.522625 TTGTTGAGATTTCTTGGTTGTTGA 57.477 33.333 0.00 0.00 0.00 3.18
2300 13190 6.135290 TGTTGAGATTTCTTGGTTGTTGAG 57.865 37.500 0.00 0.00 0.00 3.02
2301 13191 5.885352 TGTTGAGATTTCTTGGTTGTTGAGA 59.115 36.000 0.00 0.00 0.00 3.27
2302 13192 6.547141 TGTTGAGATTTCTTGGTTGTTGAGAT 59.453 34.615 0.00 0.00 0.00 2.75
2303 13193 7.068593 TGTTGAGATTTCTTGGTTGTTGAGATT 59.931 33.333 0.00 0.00 0.00 2.40
2304 13194 6.973843 TGAGATTTCTTGGTTGTTGAGATTG 58.026 36.000 0.00 0.00 0.00 2.67
2305 13195 5.776744 AGATTTCTTGGTTGTTGAGATTGC 58.223 37.500 0.00 0.00 0.00 3.56
2306 13196 5.537674 AGATTTCTTGGTTGTTGAGATTGCT 59.462 36.000 0.00 0.00 0.00 3.91
2307 13197 5.596836 TTTCTTGGTTGTTGAGATTGCTT 57.403 34.783 0.00 0.00 0.00 3.91
2308 13198 4.836125 TCTTGGTTGTTGAGATTGCTTC 57.164 40.909 0.00 0.00 0.00 3.86
2309 13199 4.464008 TCTTGGTTGTTGAGATTGCTTCT 58.536 39.130 0.00 0.00 37.41 2.85
2310 13200 4.889409 TCTTGGTTGTTGAGATTGCTTCTT 59.111 37.500 0.00 0.00 33.74 2.52
2311 13201 4.572985 TGGTTGTTGAGATTGCTTCTTG 57.427 40.909 0.00 0.00 33.74 3.02
2312 13202 3.953612 TGGTTGTTGAGATTGCTTCTTGT 59.046 39.130 0.00 0.00 33.74 3.16
2313 13203 4.402155 TGGTTGTTGAGATTGCTTCTTGTT 59.598 37.500 0.00 0.00 33.74 2.83
2314 13204 4.741676 GGTTGTTGAGATTGCTTCTTGTTG 59.258 41.667 0.00 0.00 33.74 3.33
2315 13205 5.343249 GTTGTTGAGATTGCTTCTTGTTGT 58.657 37.500 0.00 0.00 33.74 3.32
2316 13206 4.923893 TGTTGAGATTGCTTCTTGTTGTG 58.076 39.130 0.00 0.00 33.74 3.33
2317 13207 3.631145 TGAGATTGCTTCTTGTTGTGC 57.369 42.857 0.00 0.00 33.74 4.57
2318 13208 2.950975 TGAGATTGCTTCTTGTTGTGCA 59.049 40.909 0.00 0.00 33.74 4.57
2322 13212 2.798976 TGCTTCTTGTTGTGCAATCC 57.201 45.000 0.00 0.00 36.36 3.01
2323 13213 2.030371 TGCTTCTTGTTGTGCAATCCA 58.970 42.857 0.00 0.00 36.36 3.41
2324 13214 2.223782 TGCTTCTTGTTGTGCAATCCAC 60.224 45.455 0.00 0.00 44.90 4.02
2331 13221 2.258286 GTGCAATCCACGCCAACC 59.742 61.111 0.00 0.00 34.22 3.77
2332 13222 2.115052 TGCAATCCACGCCAACCT 59.885 55.556 0.00 0.00 0.00 3.50
2333 13223 1.971167 TGCAATCCACGCCAACCTC 60.971 57.895 0.00 0.00 0.00 3.85
2334 13224 2.700773 GCAATCCACGCCAACCTCC 61.701 63.158 0.00 0.00 0.00 4.30
2335 13225 1.002134 CAATCCACGCCAACCTCCT 60.002 57.895 0.00 0.00 0.00 3.69
2336 13226 1.002134 AATCCACGCCAACCTCCTG 60.002 57.895 0.00 0.00 0.00 3.86
2337 13227 1.779061 AATCCACGCCAACCTCCTGT 61.779 55.000 0.00 0.00 0.00 4.00
2338 13228 0.907704 ATCCACGCCAACCTCCTGTA 60.908 55.000 0.00 0.00 0.00 2.74
2339 13229 1.122632 TCCACGCCAACCTCCTGTAA 61.123 55.000 0.00 0.00 0.00 2.41
2340 13230 0.953960 CCACGCCAACCTCCTGTAAC 60.954 60.000 0.00 0.00 0.00 2.50
2341 13231 0.953960 CACGCCAACCTCCTGTAACC 60.954 60.000 0.00 0.00 0.00 2.85
2342 13232 1.373435 CGCCAACCTCCTGTAACCA 59.627 57.895 0.00 0.00 0.00 3.67
2343 13233 0.035439 CGCCAACCTCCTGTAACCAT 60.035 55.000 0.00 0.00 0.00 3.55
2344 13234 1.751437 GCCAACCTCCTGTAACCATC 58.249 55.000 0.00 0.00 0.00 3.51
2345 13235 1.282157 GCCAACCTCCTGTAACCATCT 59.718 52.381 0.00 0.00 0.00 2.90
2346 13236 2.941415 GCCAACCTCCTGTAACCATCTG 60.941 54.545 0.00 0.00 0.00 2.90
2347 13237 2.305927 CCAACCTCCTGTAACCATCTGT 59.694 50.000 0.00 0.00 0.00 3.41
2348 13238 3.600388 CAACCTCCTGTAACCATCTGTC 58.400 50.000 0.00 0.00 0.00 3.51
2349 13239 3.191888 ACCTCCTGTAACCATCTGTCT 57.808 47.619 0.00 0.00 0.00 3.41
2350 13240 4.332683 ACCTCCTGTAACCATCTGTCTA 57.667 45.455 0.00 0.00 0.00 2.59
2351 13241 4.884961 ACCTCCTGTAACCATCTGTCTAT 58.115 43.478 0.00 0.00 0.00 1.98
2352 13242 6.027025 ACCTCCTGTAACCATCTGTCTATA 57.973 41.667 0.00 0.00 0.00 1.31
2353 13243 6.625267 ACCTCCTGTAACCATCTGTCTATAT 58.375 40.000 0.00 0.00 0.00 0.86
2354 13244 7.766628 ACCTCCTGTAACCATCTGTCTATATA 58.233 38.462 0.00 0.00 0.00 0.86
2355 13245 8.402683 ACCTCCTGTAACCATCTGTCTATATAT 58.597 37.037 0.00 0.00 0.00 0.86
2356 13246 9.261035 CCTCCTGTAACCATCTGTCTATATATT 57.739 37.037 0.00 0.00 0.00 1.28
2369 13259 9.811995 TCTGTCTATATATTAACACAAAAGCGT 57.188 29.630 0.00 0.00 0.00 5.07
2371 13261 9.037737 TGTCTATATATTAACACAAAAGCGTCC 57.962 33.333 0.00 0.00 0.00 4.79
2372 13262 8.493547 GTCTATATATTAACACAAAAGCGTCCC 58.506 37.037 0.00 0.00 0.00 4.46
2373 13263 8.426489 TCTATATATTAACACAAAAGCGTCCCT 58.574 33.333 0.00 0.00 0.00 4.20
2374 13264 3.915437 ATTAACACAAAAGCGTCCCTG 57.085 42.857 0.00 0.00 0.00 4.45
2375 13265 0.948678 TAACACAAAAGCGTCCCTGC 59.051 50.000 0.00 0.00 0.00 4.85
2376 13266 2.058829 AACACAAAAGCGTCCCTGCG 62.059 55.000 0.00 0.00 40.67 5.18
2377 13267 2.110213 ACAAAAGCGTCCCTGCGA 59.890 55.556 0.00 0.00 40.67 5.10
2378 13268 1.961277 ACAAAAGCGTCCCTGCGAG 60.961 57.895 0.00 0.00 40.67 5.03
2379 13269 2.358737 AAAAGCGTCCCTGCGAGG 60.359 61.111 0.00 0.00 40.67 4.63
2384 13274 2.279517 CGTCCCTGCGAGGCATAC 60.280 66.667 0.00 0.00 38.13 2.39
2385 13275 2.279517 GTCCCTGCGAGGCATACG 60.280 66.667 0.00 0.00 38.13 3.06
2393 13283 3.577231 CGAGGCATACGCTTCATCT 57.423 52.632 0.00 0.00 44.20 2.90
2394 13284 2.706555 CGAGGCATACGCTTCATCTA 57.293 50.000 0.00 0.00 44.20 1.98
2395 13285 3.223423 CGAGGCATACGCTTCATCTAT 57.777 47.619 0.00 0.00 44.20 1.98
2396 13286 3.175152 CGAGGCATACGCTTCATCTATC 58.825 50.000 0.00 0.00 44.20 2.08
2397 13287 3.175152 GAGGCATACGCTTCATCTATCG 58.825 50.000 0.00 0.00 43.49 2.92
2398 13288 2.558795 AGGCATACGCTTCATCTATCGT 59.441 45.455 0.00 0.00 38.60 3.73
2399 13289 3.005897 AGGCATACGCTTCATCTATCGTT 59.994 43.478 0.00 0.00 38.60 3.85
2400 13290 3.741344 GGCATACGCTTCATCTATCGTTT 59.259 43.478 0.00 0.00 38.60 3.60
2401 13291 4.211374 GGCATACGCTTCATCTATCGTTTT 59.789 41.667 0.00 0.00 38.60 2.43
2402 13292 5.277345 GGCATACGCTTCATCTATCGTTTTT 60.277 40.000 0.00 0.00 38.60 1.94
2403 13293 5.841296 GCATACGCTTCATCTATCGTTTTTC 59.159 40.000 0.00 0.00 36.50 2.29
2404 13294 6.509517 GCATACGCTTCATCTATCGTTTTTCA 60.510 38.462 0.00 0.00 36.50 2.69
2405 13295 5.204673 ACGCTTCATCTATCGTTTTTCAC 57.795 39.130 0.00 0.00 0.00 3.18
2406 13296 4.688879 ACGCTTCATCTATCGTTTTTCACA 59.311 37.500 0.00 0.00 0.00 3.58
2407 13297 5.351465 ACGCTTCATCTATCGTTTTTCACAT 59.649 36.000 0.00 0.00 0.00 3.21
2408 13298 5.674148 CGCTTCATCTATCGTTTTTCACATG 59.326 40.000 0.00 0.00 0.00 3.21
2409 13299 5.967674 GCTTCATCTATCGTTTTTCACATGG 59.032 40.000 0.00 0.00 0.00 3.66
2410 13300 6.403636 GCTTCATCTATCGTTTTTCACATGGT 60.404 38.462 0.00 0.00 0.00 3.55
2411 13301 7.201609 GCTTCATCTATCGTTTTTCACATGGTA 60.202 37.037 0.00 0.00 0.00 3.25
2412 13302 8.731275 TTCATCTATCGTTTTTCACATGGTAT 57.269 30.769 0.00 0.00 0.00 2.73
2413 13303 9.825109 TTCATCTATCGTTTTTCACATGGTATA 57.175 29.630 0.00 0.00 0.00 1.47
2414 13304 9.996554 TCATCTATCGTTTTTCACATGGTATAT 57.003 29.630 0.00 0.00 0.00 0.86
2419 13309 7.709269 TCGTTTTTCACATGGTATATAGAGC 57.291 36.000 0.00 0.00 0.00 4.09
2420 13310 7.269316 TCGTTTTTCACATGGTATATAGAGCA 58.731 34.615 1.14 1.14 0.00 4.26
2421 13311 7.766738 TCGTTTTTCACATGGTATATAGAGCAA 59.233 33.333 3.00 0.00 0.00 3.91
2422 13312 7.850982 CGTTTTTCACATGGTATATAGAGCAAC 59.149 37.037 3.00 0.00 0.00 4.17
2423 13313 7.801716 TTTTCACATGGTATATAGAGCAACC 57.198 36.000 3.00 0.00 0.00 3.77
2424 13314 6.747414 TTCACATGGTATATAGAGCAACCT 57.253 37.500 3.00 0.00 32.99 3.50
2425 13315 6.346477 TCACATGGTATATAGAGCAACCTC 57.654 41.667 3.00 0.00 38.42 3.85
2426 13316 5.246203 TCACATGGTATATAGAGCAACCTCC 59.754 44.000 3.00 0.00 38.96 4.30
2427 13317 5.247110 CACATGGTATATAGAGCAACCTCCT 59.753 44.000 3.00 0.00 38.96 3.69
2428 13318 5.846714 ACATGGTATATAGAGCAACCTCCTT 59.153 40.000 3.00 0.00 38.96 3.36
2429 13319 6.014156 ACATGGTATATAGAGCAACCTCCTTC 60.014 42.308 3.00 0.00 38.96 3.46
2430 13320 4.838986 TGGTATATAGAGCAACCTCCTTCC 59.161 45.833 0.00 0.00 38.96 3.46
2431 13321 4.838986 GGTATATAGAGCAACCTCCTTCCA 59.161 45.833 0.00 0.00 38.96 3.53
2432 13322 5.307196 GGTATATAGAGCAACCTCCTTCCAA 59.693 44.000 0.00 0.00 38.96 3.53
2433 13323 3.636153 ATAGAGCAACCTCCTTCCAAC 57.364 47.619 0.00 0.00 38.96 3.77
2434 13324 0.035458 AGAGCAACCTCCTTCCAACG 59.965 55.000 0.00 0.00 38.96 4.10
2435 13325 1.578206 GAGCAACCTCCTTCCAACGC 61.578 60.000 0.00 0.00 31.68 4.84
2436 13326 1.896660 GCAACCTCCTTCCAACGCA 60.897 57.895 0.00 0.00 0.00 5.24
2437 13327 1.244019 GCAACCTCCTTCCAACGCAT 61.244 55.000 0.00 0.00 0.00 4.73
2438 13328 0.804989 CAACCTCCTTCCAACGCATC 59.195 55.000 0.00 0.00 0.00 3.91
2439 13329 0.693049 AACCTCCTTCCAACGCATCT 59.307 50.000 0.00 0.00 0.00 2.90
2440 13330 1.568504 ACCTCCTTCCAACGCATCTA 58.431 50.000 0.00 0.00 0.00 1.98
2441 13331 1.482593 ACCTCCTTCCAACGCATCTAG 59.517 52.381 0.00 0.00 0.00 2.43
2442 13332 1.576356 CTCCTTCCAACGCATCTAGC 58.424 55.000 0.00 0.00 40.87 3.42
2443 13333 1.137872 CTCCTTCCAACGCATCTAGCT 59.862 52.381 0.00 0.00 42.61 3.32
2444 13334 2.362397 CTCCTTCCAACGCATCTAGCTA 59.638 50.000 0.00 0.00 42.61 3.32
2445 13335 2.965831 TCCTTCCAACGCATCTAGCTAT 59.034 45.455 0.00 0.00 42.61 2.97
2446 13336 3.062763 CCTTCCAACGCATCTAGCTATG 58.937 50.000 0.00 0.00 42.61 2.23
2452 13342 2.748268 GCATCTAGCTATGCCGAGC 58.252 57.895 9.91 0.00 45.31 5.03
2458 13348 3.133014 GCTATGCCGAGCTCCTCA 58.867 61.111 8.47 6.58 39.50 3.86
2459 13349 1.670590 GCTATGCCGAGCTCCTCAT 59.329 57.895 8.47 13.55 39.50 2.90
2460 13350 0.389687 GCTATGCCGAGCTCCTCATC 60.390 60.000 15.97 3.24 39.50 2.92
2461 13351 0.246086 CTATGCCGAGCTCCTCATCC 59.754 60.000 15.97 0.00 0.00 3.51
2462 13352 1.527433 TATGCCGAGCTCCTCATCCG 61.527 60.000 15.97 0.61 0.00 4.18
2463 13353 3.532155 GCCGAGCTCCTCATCCGT 61.532 66.667 8.47 0.00 0.00 4.69
2464 13354 2.725008 CCGAGCTCCTCATCCGTC 59.275 66.667 8.47 0.00 0.00 4.79
2465 13355 2.329690 CGAGCTCCTCATCCGTCG 59.670 66.667 8.47 0.00 0.00 5.12
2466 13356 2.026879 GAGCTCCTCATCCGTCGC 59.973 66.667 0.87 0.00 0.00 5.19
2467 13357 3.492311 GAGCTCCTCATCCGTCGCC 62.492 68.421 0.87 0.00 0.00 5.54
2468 13358 3.838271 GCTCCTCATCCGTCGCCA 61.838 66.667 0.00 0.00 0.00 5.69
2469 13359 3.133014 CTCCTCATCCGTCGCCAT 58.867 61.111 0.00 0.00 0.00 4.40
2470 13360 1.300465 CTCCTCATCCGTCGCCATG 60.300 63.158 0.00 0.00 0.00 3.66
2471 13361 2.280389 CCTCATCCGTCGCCATGG 60.280 66.667 7.63 7.63 0.00 3.66
2472 13362 2.969238 CTCATCCGTCGCCATGGC 60.969 66.667 27.67 27.67 37.85 4.40
2473 13363 4.545706 TCATCCGTCGCCATGGCC 62.546 66.667 30.79 16.77 37.98 5.36
2505 13395 3.402681 CTCCCTCGGCCACACCAT 61.403 66.667 2.24 0.00 39.03 3.55
2506 13396 3.391665 CTCCCTCGGCCACACCATC 62.392 68.421 2.24 0.00 39.03 3.51
2507 13397 3.716195 CCCTCGGCCACACCATCA 61.716 66.667 2.24 0.00 39.03 3.07
2508 13398 2.436646 CCTCGGCCACACCATCAC 60.437 66.667 2.24 0.00 39.03 3.06
2509 13399 2.436646 CTCGGCCACACCATCACC 60.437 66.667 2.24 0.00 39.03 4.02
2510 13400 4.386951 TCGGCCACACCATCACCG 62.387 66.667 2.24 0.00 45.15 4.94
2511 13401 4.386951 CGGCCACACCATCACCGA 62.387 66.667 2.24 0.00 46.71 4.69
2512 13402 2.436646 GGCCACACCATCACCGAG 60.437 66.667 0.00 0.00 38.86 4.63
2513 13403 2.662596 GCCACACCATCACCGAGA 59.337 61.111 0.00 0.00 0.00 4.04
2514 13404 1.003839 GCCACACCATCACCGAGAA 60.004 57.895 0.00 0.00 0.00 2.87
2515 13405 1.021390 GCCACACCATCACCGAGAAG 61.021 60.000 0.00 0.00 0.00 2.85
2516 13406 0.321671 CCACACCATCACCGAGAAGT 59.678 55.000 0.00 0.00 0.00 3.01
2517 13407 1.270839 CCACACCATCACCGAGAAGTT 60.271 52.381 0.00 0.00 0.00 2.66
2518 13408 1.800586 CACACCATCACCGAGAAGTTG 59.199 52.381 0.00 0.00 0.00 3.16
2519 13409 1.691976 ACACCATCACCGAGAAGTTGA 59.308 47.619 0.00 0.00 0.00 3.18
2520 13410 2.069273 CACCATCACCGAGAAGTTGAC 58.931 52.381 0.00 0.00 0.00 3.18
2521 13411 1.336887 ACCATCACCGAGAAGTTGACG 60.337 52.381 0.00 0.00 0.00 4.35
2522 13412 0.716108 CATCACCGAGAAGTTGACGC 59.284 55.000 0.00 0.00 0.00 5.19
2523 13413 0.732880 ATCACCGAGAAGTTGACGCG 60.733 55.000 3.53 3.53 0.00 6.01
2525 13415 2.809601 CCGAGAAGTTGACGCGGG 60.810 66.667 12.47 0.00 44.39 6.13
2526 13416 2.257371 CGAGAAGTTGACGCGGGA 59.743 61.111 12.47 0.00 0.00 5.14
2527 13417 1.801913 CGAGAAGTTGACGCGGGAG 60.802 63.158 12.47 0.00 0.00 4.30
2528 13418 1.585006 GAGAAGTTGACGCGGGAGA 59.415 57.895 12.47 0.00 0.00 3.71
2529 13419 0.038526 GAGAAGTTGACGCGGGAGAA 60.039 55.000 12.47 0.00 0.00 2.87
2530 13420 0.319641 AGAAGTTGACGCGGGAGAAC 60.320 55.000 12.47 7.37 0.00 3.01
2531 13421 0.319641 GAAGTTGACGCGGGAGAACT 60.320 55.000 12.47 9.69 0.00 3.01
2532 13422 0.106149 AAGTTGACGCGGGAGAACTT 59.894 50.000 19.94 19.94 34.54 2.66
2533 13423 0.319641 AGTTGACGCGGGAGAACTTC 60.320 55.000 12.47 0.00 0.00 3.01
2534 13424 1.005394 TTGACGCGGGAGAACTTCC 60.005 57.895 12.47 0.00 46.00 3.46
2535 13425 1.469335 TTGACGCGGGAGAACTTCCT 61.469 55.000 12.47 0.00 45.98 3.36
2536 13426 1.153804 GACGCGGGAGAACTTCCTC 60.154 63.158 12.47 0.00 45.98 3.71
2537 13427 2.202623 CGCGGGAGAACTTCCTCG 60.203 66.667 0.00 0.00 45.98 4.63
2538 13428 2.971452 GCGGGAGAACTTCCTCGT 59.029 61.111 0.00 0.00 45.98 4.18
2539 13429 1.153804 GCGGGAGAACTTCCTCGTC 60.154 63.158 0.00 0.00 45.98 4.20
2540 13430 1.596895 GCGGGAGAACTTCCTCGTCT 61.597 60.000 0.00 0.00 45.98 4.18
2541 13431 0.171455 CGGGAGAACTTCCTCGTCTG 59.829 60.000 0.00 0.00 45.98 3.51
2542 13432 0.533032 GGGAGAACTTCCTCGTCTGG 59.467 60.000 0.00 0.00 45.98 3.86
2543 13433 1.546961 GGAGAACTTCCTCGTCTGGA 58.453 55.000 0.00 0.00 43.16 3.86
2544 13434 1.893801 GGAGAACTTCCTCGTCTGGAA 59.106 52.381 6.99 6.99 43.16 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 1.486310 AGCATCGCTCCACCAAAGATA 59.514 47.619 0.00 0.00 30.62 1.98
119 121 1.227380 GCCATCAAGATCCGTCGCT 60.227 57.895 0.00 0.00 0.00 4.93
362 365 0.773644 CCCCAGCCTAGGCACATATT 59.226 55.000 34.70 11.07 44.88 1.28
416 420 3.008157 TGTCCGAGCCTAATACCAAACAA 59.992 43.478 0.00 0.00 0.00 2.83
970 4656 4.421058 CAGATACAACACTAGCTACGCAA 58.579 43.478 0.00 0.00 0.00 4.85
1370 9550 4.081198 ACAATCCTCAGGAGCTACTTCAAG 60.081 45.833 0.00 0.00 34.05 3.02
1654 9853 6.223120 AGATTTGCCAAACCAAAATACTCAC 58.777 36.000 0.00 0.00 38.12 3.51
1678 9877 8.177119 ACAATTGCTAGTAAAGGTTCAAATGA 57.823 30.769 5.05 0.00 0.00 2.57
1714 12136 1.800586 TGCGCTTGAGAGTCATTTCAC 59.199 47.619 9.73 0.00 0.00 3.18
1726 12148 2.510012 CGGAGCATCTGCGCTTGA 60.510 61.111 9.73 7.63 44.01 3.02
1777 12199 5.196341 TGTGACGAAGAGTTAACTGACAT 57.804 39.130 14.14 0.00 0.00 3.06
1891 12333 0.539518 TTTGCGGGGAAGATCGATGA 59.460 50.000 0.54 0.00 0.00 2.92
1909 12351 4.019321 TGGGAGATCGATGGACTTTTCTTT 60.019 41.667 0.54 0.00 0.00 2.52
1911 12353 3.107601 TGGGAGATCGATGGACTTTTCT 58.892 45.455 0.54 0.00 0.00 2.52
1912 12354 3.543680 TGGGAGATCGATGGACTTTTC 57.456 47.619 0.54 0.00 0.00 2.29
1913 12355 3.813443 CATGGGAGATCGATGGACTTTT 58.187 45.455 0.54 0.00 0.00 2.27
1914 12356 2.486191 GCATGGGAGATCGATGGACTTT 60.486 50.000 0.54 0.00 33.00 2.66
1915 12357 1.071385 GCATGGGAGATCGATGGACTT 59.929 52.381 0.54 0.00 33.00 3.01
1916 12358 0.683973 GCATGGGAGATCGATGGACT 59.316 55.000 0.54 0.00 33.00 3.85
1917 12359 0.394192 TGCATGGGAGATCGATGGAC 59.606 55.000 0.54 0.00 33.00 4.02
1918 12360 0.394192 GTGCATGGGAGATCGATGGA 59.606 55.000 0.54 0.00 33.00 3.41
1919 12361 0.107268 TGTGCATGGGAGATCGATGG 59.893 55.000 0.54 0.00 33.00 3.51
1920 12362 1.957668 TTGTGCATGGGAGATCGATG 58.042 50.000 0.54 0.00 35.11 3.84
1921 12363 2.945080 ATTGTGCATGGGAGATCGAT 57.055 45.000 0.00 0.00 0.00 3.59
1922 12364 3.836365 TTATTGTGCATGGGAGATCGA 57.164 42.857 0.00 0.00 0.00 3.59
1923 12365 4.898829 TTTTATTGTGCATGGGAGATCG 57.101 40.909 0.00 0.00 0.00 3.69
1924 12366 9.768662 ATTTTATTTTATTGTGCATGGGAGATC 57.231 29.630 0.00 0.00 0.00 2.75
1941 12383 9.067986 GGGAGATCGATGGACTTATTTTATTTT 57.932 33.333 0.54 0.00 0.00 1.82
1942 12384 8.217799 TGGGAGATCGATGGACTTATTTTATTT 58.782 33.333 0.54 0.00 0.00 1.40
1943 12385 7.745717 TGGGAGATCGATGGACTTATTTTATT 58.254 34.615 0.54 0.00 0.00 1.40
1944 12386 7.316393 TGGGAGATCGATGGACTTATTTTAT 57.684 36.000 0.54 0.00 0.00 1.40
1945 12387 6.740944 TGGGAGATCGATGGACTTATTTTA 57.259 37.500 0.54 0.00 0.00 1.52
1950 12392 3.844640 TCATGGGAGATCGATGGACTTA 58.155 45.455 0.54 0.00 33.19 2.24
2017 12907 4.267536 CCCTGTTCATCCATAGCCATATG 58.732 47.826 0.00 0.00 38.85 1.78
2018 12908 3.267812 CCCCTGTTCATCCATAGCCATAT 59.732 47.826 0.00 0.00 0.00 1.78
2040 12930 2.265467 TATTGGTCAAGGGCGGCCTC 62.265 60.000 32.90 19.21 0.00 4.70
2041 12931 1.645402 ATATTGGTCAAGGGCGGCCT 61.645 55.000 27.45 27.45 0.00 5.19
2042 12932 1.152756 ATATTGGTCAAGGGCGGCC 60.153 57.895 22.67 22.67 0.00 6.13
2043 12933 0.179018 AGATATTGGTCAAGGGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
2044 12934 1.597742 CAGATATTGGTCAAGGGCGG 58.402 55.000 0.00 0.00 0.00 6.13
2045 12935 1.597742 CCAGATATTGGTCAAGGGCG 58.402 55.000 0.00 0.00 42.41 6.13
2054 12944 5.975973 GAACTCACCGTTGCCAGATATTGG 61.976 50.000 0.94 0.94 42.35 3.16
2055 12945 2.632377 ACTCACCGTTGCCAGATATTG 58.368 47.619 0.00 0.00 0.00 1.90
2056 12946 3.055094 AGAACTCACCGTTGCCAGATATT 60.055 43.478 0.00 0.00 35.56 1.28
2057 12947 2.501723 AGAACTCACCGTTGCCAGATAT 59.498 45.455 0.00 0.00 35.56 1.63
2058 12948 1.899814 AGAACTCACCGTTGCCAGATA 59.100 47.619 0.00 0.00 35.56 1.98
2062 12952 0.468226 AGAAGAACTCACCGTTGCCA 59.532 50.000 0.00 0.00 35.56 4.92
2066 12956 2.299297 CAGGGTAGAAGAACTCACCGTT 59.701 50.000 0.00 0.00 38.91 4.44
2068 12958 1.893801 ACAGGGTAGAAGAACTCACCG 59.106 52.381 0.00 0.00 32.22 4.94
2099 12989 0.315251 CGAGGCAGGATAGATGCGAA 59.685 55.000 0.00 0.00 44.80 4.70
2100 12990 0.823769 ACGAGGCAGGATAGATGCGA 60.824 55.000 0.00 0.00 44.80 5.10
2109 12999 1.074951 TGAGAGTCACGAGGCAGGA 59.925 57.895 0.00 0.00 0.00 3.86
2110 13000 1.214062 GTGAGAGTCACGAGGCAGG 59.786 63.158 0.00 0.00 37.67 4.85
2128 13018 2.809601 CAAGAACCGGACGCCTCG 60.810 66.667 9.46 0.00 0.00 4.63
2142 13032 2.289694 ACGTGATCTTGGGGAAGACAAG 60.290 50.000 0.00 0.00 45.08 3.16
2153 13043 3.426695 GCTGATTTGGGAACGTGATCTTG 60.427 47.826 0.00 0.00 0.00 3.02
2157 13047 1.463674 GGCTGATTTGGGAACGTGAT 58.536 50.000 0.00 0.00 0.00 3.06
2160 13050 0.322546 GAGGGCTGATTTGGGAACGT 60.323 55.000 0.00 0.00 0.00 3.99
2162 13052 1.032114 CCGAGGGCTGATTTGGGAAC 61.032 60.000 0.00 0.00 0.00 3.62
2218 13108 7.958053 AGCAGAATACGGTTTATACAATACC 57.042 36.000 0.00 0.00 0.00 2.73
2219 13109 8.823818 ACAAGCAGAATACGGTTTATACAATAC 58.176 33.333 0.00 0.00 0.00 1.89
2220 13110 8.951787 ACAAGCAGAATACGGTTTATACAATA 57.048 30.769 0.00 0.00 0.00 1.90
2221 13111 7.859325 ACAAGCAGAATACGGTTTATACAAT 57.141 32.000 0.00 0.00 0.00 2.71
2222 13112 8.658609 GTTACAAGCAGAATACGGTTTATACAA 58.341 33.333 0.00 0.00 0.00 2.41
2223 13113 7.009448 CGTTACAAGCAGAATACGGTTTATACA 59.991 37.037 0.00 0.00 0.00 2.29
2224 13114 7.220683 TCGTTACAAGCAGAATACGGTTTATAC 59.779 37.037 0.00 0.00 0.00 1.47
2225 13115 7.257003 TCGTTACAAGCAGAATACGGTTTATA 58.743 34.615 0.00 0.00 0.00 0.98
2226 13116 6.101332 TCGTTACAAGCAGAATACGGTTTAT 58.899 36.000 0.00 0.00 0.00 1.40
2227 13117 5.468592 TCGTTACAAGCAGAATACGGTTTA 58.531 37.500 0.00 0.00 0.00 2.01
2228 13118 4.309099 TCGTTACAAGCAGAATACGGTTT 58.691 39.130 0.00 0.00 0.00 3.27
2229 13119 3.916761 TCGTTACAAGCAGAATACGGTT 58.083 40.909 0.00 0.00 0.00 4.44
2230 13120 3.581024 TCGTTACAAGCAGAATACGGT 57.419 42.857 0.00 0.00 0.00 4.83
2231 13121 5.516996 TCTATCGTTACAAGCAGAATACGG 58.483 41.667 0.00 0.00 0.00 4.02
2232 13122 5.115773 GCTCTATCGTTACAAGCAGAATACG 59.884 44.000 0.00 0.00 33.21 3.06
2233 13123 6.210078 AGCTCTATCGTTACAAGCAGAATAC 58.790 40.000 0.00 0.00 35.42 1.89
2234 13124 6.392625 AGCTCTATCGTTACAAGCAGAATA 57.607 37.500 0.00 0.00 35.42 1.75
2235 13125 5.269505 AGCTCTATCGTTACAAGCAGAAT 57.730 39.130 0.00 0.00 35.42 2.40
2236 13126 4.720649 AGCTCTATCGTTACAAGCAGAA 57.279 40.909 0.00 0.00 35.42 3.02
2237 13127 4.261238 GCTAGCTCTATCGTTACAAGCAGA 60.261 45.833 7.70 0.00 35.42 4.26
2238 13128 3.978217 GCTAGCTCTATCGTTACAAGCAG 59.022 47.826 7.70 0.00 35.42 4.24
2239 13129 3.548214 CGCTAGCTCTATCGTTACAAGCA 60.548 47.826 13.93 0.00 35.42 3.91
2240 13130 2.974536 CGCTAGCTCTATCGTTACAAGC 59.025 50.000 13.93 0.00 0.00 4.01
2241 13131 4.469625 TCGCTAGCTCTATCGTTACAAG 57.530 45.455 13.93 0.00 0.00 3.16
2242 13132 6.348295 CCTTATCGCTAGCTCTATCGTTACAA 60.348 42.308 13.93 0.00 0.00 2.41
2243 13133 5.121925 CCTTATCGCTAGCTCTATCGTTACA 59.878 44.000 13.93 0.00 0.00 2.41
2244 13134 5.350914 TCCTTATCGCTAGCTCTATCGTTAC 59.649 44.000 13.93 0.00 0.00 2.50
2245 13135 5.485620 TCCTTATCGCTAGCTCTATCGTTA 58.514 41.667 13.93 0.00 0.00 3.18
2246 13136 4.325119 TCCTTATCGCTAGCTCTATCGTT 58.675 43.478 13.93 0.00 0.00 3.85
2247 13137 3.940319 TCCTTATCGCTAGCTCTATCGT 58.060 45.455 13.93 0.00 0.00 3.73
2248 13138 5.493133 AATCCTTATCGCTAGCTCTATCG 57.507 43.478 13.93 0.00 0.00 2.92
2249 13139 7.562454 ACTAATCCTTATCGCTAGCTCTATC 57.438 40.000 13.93 0.00 0.00 2.08
2250 13140 9.635404 AATACTAATCCTTATCGCTAGCTCTAT 57.365 33.333 13.93 6.26 0.00 1.98
2251 13141 9.463902 AAATACTAATCCTTATCGCTAGCTCTA 57.536 33.333 13.93 0.90 0.00 2.43
2252 13142 7.948034 AATACTAATCCTTATCGCTAGCTCT 57.052 36.000 13.93 1.96 0.00 4.09
2253 13143 8.030106 ACAAATACTAATCCTTATCGCTAGCTC 58.970 37.037 13.93 0.00 0.00 4.09
2254 13144 7.897864 ACAAATACTAATCCTTATCGCTAGCT 58.102 34.615 13.93 0.00 0.00 3.32
2255 13145 8.436200 CAACAAATACTAATCCTTATCGCTAGC 58.564 37.037 4.06 4.06 0.00 3.42
2256 13146 9.692749 TCAACAAATACTAATCCTTATCGCTAG 57.307 33.333 0.00 0.00 0.00 3.42
2257 13147 9.692749 CTCAACAAATACTAATCCTTATCGCTA 57.307 33.333 0.00 0.00 0.00 4.26
2258 13148 8.421784 TCTCAACAAATACTAATCCTTATCGCT 58.578 33.333 0.00 0.00 0.00 4.93
2259 13149 8.589335 TCTCAACAAATACTAATCCTTATCGC 57.411 34.615 0.00 0.00 0.00 4.58
2270 13160 9.349713 ACAACCAAGAAATCTCAACAAATACTA 57.650 29.630 0.00 0.00 0.00 1.82
2271 13161 8.237811 ACAACCAAGAAATCTCAACAAATACT 57.762 30.769 0.00 0.00 0.00 2.12
2272 13162 8.755018 CAACAACCAAGAAATCTCAACAAATAC 58.245 33.333 0.00 0.00 0.00 1.89
2273 13163 8.690884 TCAACAACCAAGAAATCTCAACAAATA 58.309 29.630 0.00 0.00 0.00 1.40
2274 13164 7.555087 TCAACAACCAAGAAATCTCAACAAAT 58.445 30.769 0.00 0.00 0.00 2.32
2275 13165 6.929625 TCAACAACCAAGAAATCTCAACAAA 58.070 32.000 0.00 0.00 0.00 2.83
2276 13166 6.376864 TCTCAACAACCAAGAAATCTCAACAA 59.623 34.615 0.00 0.00 0.00 2.83
2277 13167 5.885352 TCTCAACAACCAAGAAATCTCAACA 59.115 36.000 0.00 0.00 0.00 3.33
2278 13168 6.377327 TCTCAACAACCAAGAAATCTCAAC 57.623 37.500 0.00 0.00 0.00 3.18
2279 13169 7.428020 CAATCTCAACAACCAAGAAATCTCAA 58.572 34.615 0.00 0.00 0.00 3.02
2280 13170 6.515531 GCAATCTCAACAACCAAGAAATCTCA 60.516 38.462 0.00 0.00 0.00 3.27
2281 13171 5.860716 GCAATCTCAACAACCAAGAAATCTC 59.139 40.000 0.00 0.00 0.00 2.75
2282 13172 5.537674 AGCAATCTCAACAACCAAGAAATCT 59.462 36.000 0.00 0.00 0.00 2.40
2283 13173 5.776744 AGCAATCTCAACAACCAAGAAATC 58.223 37.500 0.00 0.00 0.00 2.17
2284 13174 5.796424 AGCAATCTCAACAACCAAGAAAT 57.204 34.783 0.00 0.00 0.00 2.17
2285 13175 5.360714 AGAAGCAATCTCAACAACCAAGAAA 59.639 36.000 0.00 0.00 30.46 2.52
2286 13176 4.889409 AGAAGCAATCTCAACAACCAAGAA 59.111 37.500 0.00 0.00 30.46 2.52
2287 13177 4.464008 AGAAGCAATCTCAACAACCAAGA 58.536 39.130 0.00 0.00 30.46 3.02
2288 13178 4.843220 AGAAGCAATCTCAACAACCAAG 57.157 40.909 0.00 0.00 30.46 3.61
2289 13179 4.402155 ACAAGAAGCAATCTCAACAACCAA 59.598 37.500 0.00 0.00 37.42 3.67
2290 13180 3.953612 ACAAGAAGCAATCTCAACAACCA 59.046 39.130 0.00 0.00 37.42 3.67
2291 13181 4.574599 ACAAGAAGCAATCTCAACAACC 57.425 40.909 0.00 0.00 37.42 3.77
2292 13182 5.230726 CACAACAAGAAGCAATCTCAACAAC 59.769 40.000 0.00 0.00 37.42 3.32
2293 13183 5.342433 CACAACAAGAAGCAATCTCAACAA 58.658 37.500 0.00 0.00 37.42 2.83
2294 13184 4.734402 GCACAACAAGAAGCAATCTCAACA 60.734 41.667 0.00 0.00 37.42 3.33
2295 13185 3.732721 GCACAACAAGAAGCAATCTCAAC 59.267 43.478 0.00 0.00 37.42 3.18
2296 13186 3.380954 TGCACAACAAGAAGCAATCTCAA 59.619 39.130 0.00 0.00 37.42 3.02
2297 13187 2.950975 TGCACAACAAGAAGCAATCTCA 59.049 40.909 0.00 0.00 37.42 3.27
2298 13188 3.631145 TGCACAACAAGAAGCAATCTC 57.369 42.857 0.00 0.00 37.42 2.75
2303 13193 2.030371 TGGATTGCACAACAAGAAGCA 58.970 42.857 0.00 0.00 42.87 3.91
2304 13194 2.397549 GTGGATTGCACAACAAGAAGC 58.602 47.619 3.13 0.00 42.87 3.86
2305 13195 2.653890 CGTGGATTGCACAACAAGAAG 58.346 47.619 9.08 0.00 42.87 2.85
2306 13196 1.268999 GCGTGGATTGCACAACAAGAA 60.269 47.619 9.08 0.00 42.87 2.52
2307 13197 0.310543 GCGTGGATTGCACAACAAGA 59.689 50.000 9.08 0.00 42.87 3.02
2308 13198 0.664166 GGCGTGGATTGCACAACAAG 60.664 55.000 9.08 0.00 42.87 3.16
2309 13199 1.361993 GGCGTGGATTGCACAACAA 59.638 52.632 9.08 0.00 44.01 2.83
2310 13200 1.387295 TTGGCGTGGATTGCACAACA 61.387 50.000 9.08 3.73 0.00 3.33
2311 13201 0.939106 GTTGGCGTGGATTGCACAAC 60.939 55.000 9.08 2.21 36.82 3.32
2312 13202 1.361993 GTTGGCGTGGATTGCACAA 59.638 52.632 9.08 0.00 0.00 3.33
2313 13203 2.560119 GGTTGGCGTGGATTGCACA 61.560 57.895 9.08 0.00 0.00 4.57
2314 13204 2.200170 GAGGTTGGCGTGGATTGCAC 62.200 60.000 0.00 0.00 0.00 4.57
2315 13205 1.971167 GAGGTTGGCGTGGATTGCA 60.971 57.895 0.00 0.00 0.00 4.08
2316 13206 2.700773 GGAGGTTGGCGTGGATTGC 61.701 63.158 0.00 0.00 0.00 3.56
2317 13207 1.002134 AGGAGGTTGGCGTGGATTG 60.002 57.895 0.00 0.00 0.00 2.67
2318 13208 1.002134 CAGGAGGTTGGCGTGGATT 60.002 57.895 0.00 0.00 0.00 3.01
2319 13209 0.907704 TACAGGAGGTTGGCGTGGAT 60.908 55.000 0.00 0.00 0.00 3.41
2320 13210 1.122632 TTACAGGAGGTTGGCGTGGA 61.123 55.000 0.00 0.00 0.00 4.02
2321 13211 0.953960 GTTACAGGAGGTTGGCGTGG 60.954 60.000 0.00 0.00 0.00 4.94
2322 13212 0.953960 GGTTACAGGAGGTTGGCGTG 60.954 60.000 0.00 0.00 0.00 5.34
2323 13213 1.373812 GGTTACAGGAGGTTGGCGT 59.626 57.895 0.00 0.00 0.00 5.68
2324 13214 0.035439 ATGGTTACAGGAGGTTGGCG 60.035 55.000 0.00 0.00 0.00 5.69
2325 13215 1.282157 AGATGGTTACAGGAGGTTGGC 59.718 52.381 0.00 0.00 0.00 4.52
2326 13216 2.305927 ACAGATGGTTACAGGAGGTTGG 59.694 50.000 0.00 0.00 0.00 3.77
2327 13217 3.261897 AGACAGATGGTTACAGGAGGTTG 59.738 47.826 0.00 0.00 0.00 3.77
2328 13218 3.521727 AGACAGATGGTTACAGGAGGTT 58.478 45.455 0.00 0.00 0.00 3.50
2329 13219 3.191888 AGACAGATGGTTACAGGAGGT 57.808 47.619 0.00 0.00 0.00 3.85
2330 13220 8.830915 ATATATAGACAGATGGTTACAGGAGG 57.169 38.462 0.00 0.00 0.00 4.30
2343 13233 9.811995 ACGCTTTTGTGTTAATATATAGACAGA 57.188 29.630 2.30 0.00 40.78 3.41
2345 13235 9.037737 GGACGCTTTTGTGTTAATATATAGACA 57.962 33.333 0.00 0.00 44.08 3.41
2346 13236 8.493547 GGGACGCTTTTGTGTTAATATATAGAC 58.506 37.037 0.00 0.00 44.08 2.59
2347 13237 8.426489 AGGGACGCTTTTGTGTTAATATATAGA 58.574 33.333 0.00 0.00 44.08 1.98
2348 13238 8.495949 CAGGGACGCTTTTGTGTTAATATATAG 58.504 37.037 0.00 0.00 44.08 1.31
2349 13239 7.041644 GCAGGGACGCTTTTGTGTTAATATATA 60.042 37.037 0.00 0.00 44.08 0.86
2350 13240 6.238648 GCAGGGACGCTTTTGTGTTAATATAT 60.239 38.462 0.00 0.00 44.08 0.86
2351 13241 5.065474 GCAGGGACGCTTTTGTGTTAATATA 59.935 40.000 0.00 0.00 44.08 0.86
2352 13242 4.142469 GCAGGGACGCTTTTGTGTTAATAT 60.142 41.667 0.00 0.00 44.08 1.28
2353 13243 3.189702 GCAGGGACGCTTTTGTGTTAATA 59.810 43.478 0.00 0.00 44.08 0.98
2354 13244 2.030274 GCAGGGACGCTTTTGTGTTAAT 60.030 45.455 0.00 0.00 44.08 1.40
2355 13245 1.335496 GCAGGGACGCTTTTGTGTTAA 59.665 47.619 0.00 0.00 44.08 2.01
2356 13246 0.948678 GCAGGGACGCTTTTGTGTTA 59.051 50.000 0.00 0.00 44.08 2.41
2357 13247 1.733526 GCAGGGACGCTTTTGTGTT 59.266 52.632 0.00 0.00 44.08 3.32
2359 13249 2.175184 CTCGCAGGGACGCTTTTGTG 62.175 60.000 0.00 0.00 0.00 3.33
2360 13250 1.961277 CTCGCAGGGACGCTTTTGT 60.961 57.895 0.00 0.00 0.00 2.83
2361 13251 2.680913 CCTCGCAGGGACGCTTTTG 61.681 63.158 0.00 0.00 0.00 2.44
2362 13252 2.358737 CCTCGCAGGGACGCTTTT 60.359 61.111 0.00 0.00 0.00 2.27
2366 13256 4.221422 TATGCCTCGCAGGGACGC 62.221 66.667 2.02 2.02 43.65 5.19
2367 13257 2.279517 GTATGCCTCGCAGGGACG 60.280 66.667 4.65 0.00 43.65 4.79
2368 13258 2.279517 CGTATGCCTCGCAGGGAC 60.280 66.667 4.65 0.00 43.65 4.46
2375 13265 2.706555 TAGATGAAGCGTATGCCTCG 57.293 50.000 2.51 0.00 44.31 4.63
2376 13266 3.175152 CGATAGATGAAGCGTATGCCTC 58.825 50.000 2.51 0.12 40.06 4.70
2377 13267 2.558795 ACGATAGATGAAGCGTATGCCT 59.441 45.455 2.51 0.00 40.80 4.75
2378 13268 2.947852 ACGATAGATGAAGCGTATGCC 58.052 47.619 2.51 0.00 40.80 4.40
2379 13269 4.974103 AAACGATAGATGAAGCGTATGC 57.026 40.909 0.00 0.00 40.35 3.14
2380 13270 6.841286 GTGAAAAACGATAGATGAAGCGTATG 59.159 38.462 0.00 0.00 35.74 2.39
2381 13271 6.533723 TGTGAAAAACGATAGATGAAGCGTAT 59.466 34.615 0.00 0.00 35.74 3.06
2382 13272 5.865013 TGTGAAAAACGATAGATGAAGCGTA 59.135 36.000 0.00 0.00 35.74 4.42
2383 13273 4.688879 TGTGAAAAACGATAGATGAAGCGT 59.311 37.500 0.00 0.00 38.81 5.07
2384 13274 5.203358 TGTGAAAAACGATAGATGAAGCG 57.797 39.130 0.00 0.00 41.38 4.68
2385 13275 5.967674 CCATGTGAAAAACGATAGATGAAGC 59.032 40.000 0.00 0.00 41.38 3.86
2386 13276 7.076842 ACCATGTGAAAAACGATAGATGAAG 57.923 36.000 0.00 0.00 41.38 3.02
2387 13277 8.731275 ATACCATGTGAAAAACGATAGATGAA 57.269 30.769 0.00 0.00 41.38 2.57
2388 13278 9.996554 ATATACCATGTGAAAAACGATAGATGA 57.003 29.630 0.00 0.00 41.38 2.92
2393 13283 9.419297 GCTCTATATACCATGTGAAAAACGATA 57.581 33.333 0.00 0.00 0.00 2.92
2394 13284 7.931407 TGCTCTATATACCATGTGAAAAACGAT 59.069 33.333 0.00 0.00 0.00 3.73
2395 13285 7.269316 TGCTCTATATACCATGTGAAAAACGA 58.731 34.615 0.00 0.00 0.00 3.85
2396 13286 7.477144 TGCTCTATATACCATGTGAAAAACG 57.523 36.000 0.00 0.00 0.00 3.60
2397 13287 8.129211 GGTTGCTCTATATACCATGTGAAAAAC 58.871 37.037 0.00 0.00 0.00 2.43
2398 13288 8.052748 AGGTTGCTCTATATACCATGTGAAAAA 58.947 33.333 0.00 0.00 33.02 1.94
2399 13289 7.573710 AGGTTGCTCTATATACCATGTGAAAA 58.426 34.615 0.00 0.00 33.02 2.29
2400 13290 7.136822 AGGTTGCTCTATATACCATGTGAAA 57.863 36.000 0.00 0.00 33.02 2.69
2401 13291 6.239600 GGAGGTTGCTCTATATACCATGTGAA 60.240 42.308 0.00 0.00 33.02 3.18
2402 13292 5.246203 GGAGGTTGCTCTATATACCATGTGA 59.754 44.000 0.00 0.00 33.02 3.58
2403 13293 5.247110 AGGAGGTTGCTCTATATACCATGTG 59.753 44.000 0.00 0.00 33.02 3.21
2404 13294 5.407049 AGGAGGTTGCTCTATATACCATGT 58.593 41.667 0.00 0.00 33.02 3.21
2405 13295 6.365970 AAGGAGGTTGCTCTATATACCATG 57.634 41.667 0.00 0.00 33.02 3.66
2406 13296 5.485708 GGAAGGAGGTTGCTCTATATACCAT 59.514 44.000 0.00 0.00 33.02 3.55
2407 13297 4.838986 GGAAGGAGGTTGCTCTATATACCA 59.161 45.833 0.00 0.00 33.02 3.25
2408 13298 4.838986 TGGAAGGAGGTTGCTCTATATACC 59.161 45.833 0.00 0.00 0.00 2.73
2409 13299 6.224584 GTTGGAAGGAGGTTGCTCTATATAC 58.775 44.000 0.00 0.00 0.00 1.47
2410 13300 5.010719 CGTTGGAAGGAGGTTGCTCTATATA 59.989 44.000 0.00 0.00 0.00 0.86
2411 13301 4.202264 CGTTGGAAGGAGGTTGCTCTATAT 60.202 45.833 0.00 0.00 0.00 0.86
2412 13302 3.132289 CGTTGGAAGGAGGTTGCTCTATA 59.868 47.826 0.00 0.00 0.00 1.31
2413 13303 2.093447 CGTTGGAAGGAGGTTGCTCTAT 60.093 50.000 0.00 0.00 0.00 1.98
2414 13304 1.275291 CGTTGGAAGGAGGTTGCTCTA 59.725 52.381 0.00 0.00 0.00 2.43
2415 13305 0.035458 CGTTGGAAGGAGGTTGCTCT 59.965 55.000 0.00 0.00 0.00 4.09
2416 13306 1.578206 GCGTTGGAAGGAGGTTGCTC 61.578 60.000 0.00 0.00 0.00 4.26
2417 13307 1.600916 GCGTTGGAAGGAGGTTGCT 60.601 57.895 0.00 0.00 0.00 3.91
2418 13308 1.244019 ATGCGTTGGAAGGAGGTTGC 61.244 55.000 0.00 0.00 0.00 4.17
2419 13309 0.804989 GATGCGTTGGAAGGAGGTTG 59.195 55.000 0.00 0.00 0.00 3.77
2420 13310 0.693049 AGATGCGTTGGAAGGAGGTT 59.307 50.000 0.00 0.00 0.00 3.50
2421 13311 1.482593 CTAGATGCGTTGGAAGGAGGT 59.517 52.381 0.00 0.00 0.00 3.85
2422 13312 1.808133 GCTAGATGCGTTGGAAGGAGG 60.808 57.143 0.00 0.00 0.00 4.30
2423 13313 1.576356 GCTAGATGCGTTGGAAGGAG 58.424 55.000 0.00 0.00 0.00 3.69
2424 13314 3.760693 GCTAGATGCGTTGGAAGGA 57.239 52.632 0.00 0.00 0.00 3.36
2441 13331 0.389687 GATGAGGAGCTCGGCATAGC 60.390 60.000 16.87 1.43 43.11 2.97
2442 13332 0.246086 GGATGAGGAGCTCGGCATAG 59.754 60.000 16.87 0.00 32.35 2.23
2443 13333 1.527433 CGGATGAGGAGCTCGGCATA 61.527 60.000 16.87 0.00 32.35 3.14
2444 13334 2.865598 CGGATGAGGAGCTCGGCAT 61.866 63.158 16.87 16.87 32.35 4.40
2445 13335 3.531207 CGGATGAGGAGCTCGGCA 61.531 66.667 7.83 8.63 32.35 5.69
2446 13336 3.492311 GACGGATGAGGAGCTCGGC 62.492 68.421 7.83 2.35 32.35 5.54
2447 13337 2.725008 GACGGATGAGGAGCTCGG 59.275 66.667 7.83 0.00 32.35 4.63
2448 13338 2.329690 CGACGGATGAGGAGCTCG 59.670 66.667 7.83 0.00 32.35 5.03
2449 13339 2.026879 GCGACGGATGAGGAGCTC 59.973 66.667 4.71 4.71 0.00 4.09
2450 13340 3.532155 GGCGACGGATGAGGAGCT 61.532 66.667 0.00 0.00 0.00 4.09
2451 13341 3.157217 ATGGCGACGGATGAGGAGC 62.157 63.158 0.00 0.00 0.00 4.70
2452 13342 1.300465 CATGGCGACGGATGAGGAG 60.300 63.158 0.00 0.00 0.00 3.69
2453 13343 2.796193 CCATGGCGACGGATGAGGA 61.796 63.158 0.00 0.00 0.00 3.71
2454 13344 2.280389 CCATGGCGACGGATGAGG 60.280 66.667 0.00 0.00 0.00 3.86
2455 13345 2.969238 GCCATGGCGACGGATGAG 60.969 66.667 23.48 0.00 0.00 2.90
2456 13346 4.545706 GGCCATGGCGACGGATGA 62.546 66.667 29.90 0.00 43.06 2.92
2488 13378 3.391665 GATGGTGTGGCCGAGGGAG 62.392 68.421 0.00 0.00 41.21 4.30
2489 13379 3.399181 GATGGTGTGGCCGAGGGA 61.399 66.667 0.00 0.00 41.21 4.20
2490 13380 3.716195 TGATGGTGTGGCCGAGGG 61.716 66.667 0.00 0.00 41.21 4.30
2491 13381 2.436646 GTGATGGTGTGGCCGAGG 60.437 66.667 0.00 0.00 41.21 4.63
2492 13382 2.436646 GGTGATGGTGTGGCCGAG 60.437 66.667 0.00 0.00 41.21 4.63
2493 13383 4.386951 CGGTGATGGTGTGGCCGA 62.387 66.667 0.00 0.00 44.57 5.54
2494 13384 4.386951 TCGGTGATGGTGTGGCCG 62.387 66.667 0.00 0.00 43.32 6.13
2495 13385 2.436646 CTCGGTGATGGTGTGGCC 60.437 66.667 0.00 0.00 37.90 5.36
2496 13386 1.003839 TTCTCGGTGATGGTGTGGC 60.004 57.895 0.00 0.00 0.00 5.01
2497 13387 0.321671 ACTTCTCGGTGATGGTGTGG 59.678 55.000 0.00 0.00 0.00 4.17
2498 13388 1.800586 CAACTTCTCGGTGATGGTGTG 59.199 52.381 3.59 0.00 34.13 3.82
2499 13389 1.691976 TCAACTTCTCGGTGATGGTGT 59.308 47.619 9.79 0.00 38.32 4.16
2500 13390 2.069273 GTCAACTTCTCGGTGATGGTG 58.931 52.381 5.02 5.02 38.46 4.17
2501 13391 1.336887 CGTCAACTTCTCGGTGATGGT 60.337 52.381 0.00 0.00 0.00 3.55
2502 13392 1.350193 CGTCAACTTCTCGGTGATGG 58.650 55.000 0.00 0.00 0.00 3.51
2503 13393 0.716108 GCGTCAACTTCTCGGTGATG 59.284 55.000 0.00 0.00 0.00 3.07
2504 13394 0.732880 CGCGTCAACTTCTCGGTGAT 60.733 55.000 0.00 0.00 0.00 3.06
2505 13395 1.371267 CGCGTCAACTTCTCGGTGA 60.371 57.895 0.00 0.00 0.00 4.02
2506 13396 2.372690 CCGCGTCAACTTCTCGGTG 61.373 63.158 4.92 0.00 35.75 4.94
2507 13397 2.049433 CCGCGTCAACTTCTCGGT 60.049 61.111 4.92 0.00 35.75 4.69
2508 13398 2.809601 CCCGCGTCAACTTCTCGG 60.810 66.667 4.92 0.00 39.79 4.63
2509 13399 1.801913 CTCCCGCGTCAACTTCTCG 60.802 63.158 4.92 0.00 0.00 4.04
2510 13400 0.038526 TTCTCCCGCGTCAACTTCTC 60.039 55.000 4.92 0.00 0.00 2.87
2511 13401 0.319641 GTTCTCCCGCGTCAACTTCT 60.320 55.000 4.92 0.00 0.00 2.85
2512 13402 0.319641 AGTTCTCCCGCGTCAACTTC 60.320 55.000 4.92 0.00 0.00 3.01
2513 13403 0.106149 AAGTTCTCCCGCGTCAACTT 59.894 50.000 4.92 10.40 34.85 2.66
2514 13404 0.319641 GAAGTTCTCCCGCGTCAACT 60.320 55.000 4.92 4.37 0.00 3.16
2515 13405 1.289800 GGAAGTTCTCCCGCGTCAAC 61.290 60.000 4.92 1.86 38.44 3.18
2516 13406 1.005394 GGAAGTTCTCCCGCGTCAA 60.005 57.895 4.92 0.00 38.44 3.18
2517 13407 1.874345 GAGGAAGTTCTCCCGCGTCA 61.874 60.000 4.92 0.00 46.81 4.35
2518 13408 1.153804 GAGGAAGTTCTCCCGCGTC 60.154 63.158 4.92 0.00 46.81 5.19
2519 13409 2.971452 GAGGAAGTTCTCCCGCGT 59.029 61.111 4.92 0.00 46.81 6.01
2520 13410 2.202623 CGAGGAAGTTCTCCCGCG 60.203 66.667 0.00 0.00 46.81 6.46
2521 13411 1.153804 GACGAGGAAGTTCTCCCGC 60.154 63.158 2.25 0.00 46.81 6.13
2522 13412 0.171455 CAGACGAGGAAGTTCTCCCG 59.829 60.000 2.25 6.68 46.81 5.14
2523 13413 0.533032 CCAGACGAGGAAGTTCTCCC 59.467 60.000 2.25 0.00 46.81 4.30
2524 13414 1.546961 TCCAGACGAGGAAGTTCTCC 58.453 55.000 2.25 0.00 45.81 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.