Multiple sequence alignment - TraesCS6A01G003400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G003400 chr6A 100.000 2614 0 0 1 2614 1589065 1591678 0.000000e+00 4828
1 TraesCS6A01G003400 chr6A 95.987 1246 47 2 1 1245 1623500 1624743 0.000000e+00 2021
2 TraesCS6A01G003400 chr6A 92.211 873 37 11 1304 2145 1624734 1625606 0.000000e+00 1206
3 TraesCS6A01G003400 chr6A 84.667 600 85 5 1 595 67143865 67143268 2.240000e-165 592
4 TraesCS6A01G003400 chr6A 83.555 602 88 8 1 595 493693506 493692909 1.060000e-153 553
5 TraesCS6A01G003400 chr6D 95.213 564 23 4 643 1204 2438723 2439284 0.000000e+00 889
6 TraesCS6A01G003400 chr6D 91.641 646 40 4 1340 1978 2439301 2439939 0.000000e+00 881
7 TraesCS6A01G003400 chr6D 95.946 74 2 1 1990 2062 2439923 2439996 4.570000e-23 119
8 TraesCS6A01G003400 chr6B 94.614 557 27 3 643 1198 243834 244388 0.000000e+00 859
9 TraesCS6A01G003400 chr6B 89.427 681 64 6 1299 1972 227440 228119 0.000000e+00 852
10 TraesCS6A01G003400 chr6B 94.128 562 27 6 645 1204 230008 230565 0.000000e+00 850
11 TraesCS6A01G003400 chr6B 89.280 681 65 6 1299 1972 235026 235705 0.000000e+00 846
12 TraesCS6A01G003400 chr6B 89.280 681 65 6 1299 1972 237249 237928 0.000000e+00 846
13 TraesCS6A01G003400 chr6B 93.950 562 28 6 645 1204 232229 232786 0.000000e+00 845
14 TraesCS6A01G003400 chr6B 93.772 562 31 4 645 1204 226865 227424 0.000000e+00 841
15 TraesCS6A01G003400 chr6B 89.150 682 64 9 1299 1972 232802 233481 0.000000e+00 841
16 TraesCS6A01G003400 chr6B 94.065 556 29 4 645 1198 234451 235004 0.000000e+00 841
17 TraesCS6A01G003400 chr6B 93.772 562 31 4 645 1204 236674 237233 0.000000e+00 841
18 TraesCS6A01G003400 chr6B 93.772 562 29 6 645 1204 229088 229645 0.000000e+00 839
19 TraesCS6A01G003400 chr6B 89.003 682 65 9 1299 1972 230581 231260 0.000000e+00 835
20 TraesCS6A01G003400 chr6B 82.406 665 88 21 1315 1955 185585 186244 1.060000e-153 553
21 TraesCS6A01G003400 chr6B 88.018 217 22 4 1759 1972 225681 225896 1.200000e-63 254
22 TraesCS6A01G003400 chr3D 93.432 472 28 3 2145 2614 322186671 322186201 0.000000e+00 697
23 TraesCS6A01G003400 chr3D 93.235 473 28 4 2145 2614 462002622 462003093 0.000000e+00 693
24 TraesCS6A01G003400 chr3D 92.812 473 30 4 2145 2614 530911704 530911233 0.000000e+00 682
25 TraesCS6A01G003400 chr1D 93.446 473 25 6 2145 2614 95492576 95492107 0.000000e+00 697
26 TraesCS6A01G003400 chr7A 93.220 472 29 3 2145 2614 618941528 618941998 0.000000e+00 691
27 TraesCS6A01G003400 chr7A 87.814 558 62 3 1 553 627003682 627003126 0.000000e+00 649
28 TraesCS6A01G003400 chr2D 93.235 473 26 6 2145 2614 278400646 278401115 0.000000e+00 691
29 TraesCS6A01G003400 chr2D 92.842 475 26 8 2145 2614 303117402 303116931 0.000000e+00 682
30 TraesCS6A01G003400 chr5D 93.023 473 28 5 2145 2614 268352402 268352872 0.000000e+00 686
31 TraesCS6A01G003400 chr5D 93.162 468 28 4 2148 2614 95124927 95125391 0.000000e+00 684
32 TraesCS6A01G003400 chr5D 86.333 600 73 6 3 595 449294812 449295409 0.000000e+00 645
33 TraesCS6A01G003400 chr2B 87.312 599 69 4 1 594 76491974 76491378 0.000000e+00 678
34 TraesCS6A01G003400 chr2B 84.672 548 75 6 1 547 380247580 380248119 2.960000e-149 538
35 TraesCS6A01G003400 chr7B 84.043 564 83 5 49 605 64422746 64423309 1.060000e-148 536
36 TraesCS6A01G003400 chr4A 82.910 591 92 7 12 595 742819060 742818472 8.290000e-145 523


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G003400 chr6A 1589065 1591678 2613 False 4828.000000 4828 100.000000 1 2614 1 chr6A.!!$F1 2613
1 TraesCS6A01G003400 chr6A 1623500 1625606 2106 False 1613.500000 2021 94.099000 1 2145 2 chr6A.!!$F2 2144
2 TraesCS6A01G003400 chr6A 67143268 67143865 597 True 592.000000 592 84.667000 1 595 1 chr6A.!!$R1 594
3 TraesCS6A01G003400 chr6A 493692909 493693506 597 True 553.000000 553 83.555000 1 595 1 chr6A.!!$R2 594
4 TraesCS6A01G003400 chr6D 2438723 2439996 1273 False 629.666667 889 94.266667 643 2062 3 chr6D.!!$F1 1419
5 TraesCS6A01G003400 chr6B 243834 244388 554 False 859.000000 859 94.614000 643 1198 1 chr6B.!!$F2 555
6 TraesCS6A01G003400 chr6B 225681 237928 12247 False 794.250000 852 91.468083 645 1972 12 chr6B.!!$F3 1327
7 TraesCS6A01G003400 chr6B 185585 186244 659 False 553.000000 553 82.406000 1315 1955 1 chr6B.!!$F1 640
8 TraesCS6A01G003400 chr7A 627003126 627003682 556 True 649.000000 649 87.814000 1 553 1 chr7A.!!$R1 552
9 TraesCS6A01G003400 chr5D 449294812 449295409 597 False 645.000000 645 86.333000 3 595 1 chr5D.!!$F3 592
10 TraesCS6A01G003400 chr2B 76491378 76491974 596 True 678.000000 678 87.312000 1 594 1 chr2B.!!$R1 593
11 TraesCS6A01G003400 chr2B 380247580 380248119 539 False 538.000000 538 84.672000 1 547 1 chr2B.!!$F1 546
12 TraesCS6A01G003400 chr7B 64422746 64423309 563 False 536.000000 536 84.043000 49 605 1 chr7B.!!$F1 556
13 TraesCS6A01G003400 chr4A 742818472 742819060 588 True 523.000000 523 82.910000 12 595 1 chr4A.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 641 0.328592 GGAACCTCCTCACCTTTCCC 59.671 60.000 0.00 0.00 32.53 3.97 F
1198 7106 2.752903 TCGAAGGCCTTTCTATTTTGCC 59.247 45.455 21.54 1.05 42.48 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 9700 0.028955 GTAAAGGAGGGGGAGGGGAT 60.029 60.0 0.0 0.0 0.0 3.85 R
2545 11715 0.107703 CCAGCAAGCCTACGATGGAA 60.108 55.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 135 2.049985 GATGGCGACGGATCTCGG 60.050 66.667 6.51 0.00 44.45 4.63
160 163 1.875576 GCGTCCTGGAGATTAGGCATG 60.876 57.143 0.00 0.00 35.23 4.06
371 374 1.071471 CCAGTCCGGATATGTGCCC 59.929 63.158 7.81 0.00 36.56 5.36
426 430 2.095853 GGTGCGATGTCTGTTTGGTATG 59.904 50.000 0.00 0.00 0.00 2.39
429 433 3.056179 TGCGATGTCTGTTTGGTATGAGA 60.056 43.478 0.00 0.00 0.00 3.27
507 515 4.525912 AAATGGTGGCTTCAAACAGATC 57.474 40.909 0.00 0.00 0.00 2.75
513 521 5.189736 TGGTGGCTTCAAACAGATCTACTAT 59.810 40.000 0.00 0.00 0.00 2.12
517 525 9.162764 GTGGCTTCAAACAGATCTACTATTTTA 57.837 33.333 0.00 0.00 0.00 1.52
633 641 0.328592 GGAACCTCCTCACCTTTCCC 59.671 60.000 0.00 0.00 32.53 3.97
772 4457 7.669089 AATTTGGGAACTTGTCTAAAAAGGA 57.331 32.000 0.00 0.00 0.00 3.36
1198 7106 2.752903 TCGAAGGCCTTTCTATTTTGCC 59.247 45.455 21.54 1.05 42.48 4.52
1239 7147 4.562082 CGGATACAAAGCAACCGGATATA 58.438 43.478 9.46 0.00 39.92 0.86
1240 7148 5.175859 CGGATACAAAGCAACCGGATATAT 58.824 41.667 9.46 0.00 39.92 0.86
1241 7149 6.334989 CGGATACAAAGCAACCGGATATATA 58.665 40.000 9.46 0.00 39.92 0.86
1242 7150 6.984474 CGGATACAAAGCAACCGGATATATAT 59.016 38.462 9.46 0.00 39.92 0.86
1243 7151 8.139350 CGGATACAAAGCAACCGGATATATATA 58.861 37.037 9.46 0.00 39.92 0.86
1244 7152 9.998106 GGATACAAAGCAACCGGATATATATAT 57.002 33.333 9.46 4.86 0.00 0.86
1248 7156 9.162764 ACAAAGCAACCGGATATATATATTCAC 57.837 33.333 9.46 3.36 0.00 3.18
1249 7157 9.161629 CAAAGCAACCGGATATATATATTCACA 57.838 33.333 9.46 0.00 0.00 3.58
1250 7158 8.718102 AAGCAACCGGATATATATATTCACAC 57.282 34.615 9.46 0.00 0.00 3.82
1251 7159 6.978659 AGCAACCGGATATATATATTCACACG 59.021 38.462 9.46 8.82 0.00 4.49
1252 7160 6.976349 GCAACCGGATATATATATTCACACGA 59.024 38.462 9.46 0.00 0.00 4.35
1253 7161 7.043590 GCAACCGGATATATATATTCACACGAC 60.044 40.741 9.46 0.00 0.00 4.34
1254 7162 7.035840 ACCGGATATATATATTCACACGACC 57.964 40.000 9.46 3.19 0.00 4.79
1255 7163 6.140786 CCGGATATATATATTCACACGACCG 58.859 44.000 10.96 12.71 35.01 4.79
1256 7164 6.140786 CGGATATATATATTCACACGACCGG 58.859 44.000 10.96 0.00 0.00 5.28
1257 7165 6.017687 CGGATATATATATTCACACGACCGGA 60.018 42.308 9.46 0.00 0.00 5.14
1258 7166 7.308408 CGGATATATATATTCACACGACCGGAT 60.308 40.741 9.46 0.00 0.00 4.18
1259 7167 9.006839 GGATATATATATTCACACGACCGGATA 57.993 37.037 9.46 0.00 0.00 2.59
1583 9700 1.218047 GCTAGGTGCCATGACGACA 59.782 57.895 0.00 0.00 35.15 4.35
1652 9785 8.593945 ACAATGGTTATATGTCCAAGATTGTT 57.406 30.769 10.17 0.00 33.47 2.83
1739 9879 4.404073 TGTTGCTGAGTATTTTGGTTTGGT 59.596 37.500 0.00 0.00 0.00 3.67
1754 9894 6.857777 TGGTTTGGTAAATTGCATTTGAAG 57.142 33.333 0.00 0.00 33.82 3.02
1780 9920 2.040278 ACTAGCAATTGTTGGGAGAGCA 59.960 45.455 10.28 0.00 0.00 4.26
1804 9944 0.674895 AATGACTCCCAAGCGCAGAC 60.675 55.000 11.47 0.00 0.00 3.51
1850 9990 4.020751 AGCTTAGCTTGAGATCTGTGTCAA 60.021 41.667 0.00 0.00 33.89 3.18
1942 10096 1.535833 AGTACTCAGTCCTCACACGG 58.464 55.000 0.00 0.00 0.00 4.94
1943 10097 0.109226 GTACTCAGTCCTCACACGGC 60.109 60.000 0.00 0.00 0.00 5.68
1944 10098 0.251209 TACTCAGTCCTCACACGGCT 60.251 55.000 0.00 0.00 0.00 5.52
1945 10099 1.214062 CTCAGTCCTCACACGGCTC 59.786 63.158 0.00 0.00 0.00 4.70
1946 10100 2.219325 CTCAGTCCTCACACGGCTCC 62.219 65.000 0.00 0.00 0.00 4.70
1947 10101 2.118513 AGTCCTCACACGGCTCCT 59.881 61.111 0.00 0.00 0.00 3.69
1982 10136 0.107214 TCCATTGATCTTCCCCGCAC 60.107 55.000 0.00 0.00 0.00 5.34
1988 10177 1.885887 TGATCTTCCCCGCACAAAAAG 59.114 47.619 0.00 0.00 0.00 2.27
2102 10292 1.536676 CCCTTGGCCAATATCCGGT 59.463 57.895 20.85 0.00 0.00 5.28
2103 10293 0.823356 CCCTTGGCCAATATCCGGTG 60.823 60.000 20.85 4.20 0.00 4.94
2132 10322 4.168101 AGTTCTTCTACCCTGTCATGGAA 58.832 43.478 0.54 0.00 0.00 3.53
2141 10331 0.443869 CTGTCATGGAAGGTTTCGCG 59.556 55.000 0.00 0.00 0.00 5.87
2145 10335 0.443869 CATGGAAGGTTTCGCGTCTG 59.556 55.000 5.77 0.00 0.00 3.51
2148 10338 0.599204 GGAAGGTTTCGCGTCTGTCA 60.599 55.000 5.77 0.00 0.00 3.58
2149 10339 0.784778 GAAGGTTTCGCGTCTGTCAG 59.215 55.000 5.77 0.00 0.00 3.51
2151 10341 0.387929 AGGTTTCGCGTCTGTCAGAA 59.612 50.000 5.77 0.00 0.00 3.02
2152 10342 1.202486 AGGTTTCGCGTCTGTCAGAAA 60.202 47.619 5.77 0.00 0.00 2.52
2154 10344 2.991190 GGTTTCGCGTCTGTCAGAAATA 59.009 45.455 5.77 0.00 35.45 1.40
2155 10345 3.430895 GGTTTCGCGTCTGTCAGAAATAA 59.569 43.478 5.77 0.00 35.45 1.40
2156 10346 4.084223 GGTTTCGCGTCTGTCAGAAATAAA 60.084 41.667 5.77 1.00 35.45 1.40
2158 10348 4.903638 TCGCGTCTGTCAGAAATAAAAG 57.096 40.909 5.77 0.00 0.00 2.27
2159 10349 4.304110 TCGCGTCTGTCAGAAATAAAAGT 58.696 39.130 5.77 0.00 0.00 2.66
2160 10350 4.748102 TCGCGTCTGTCAGAAATAAAAGTT 59.252 37.500 5.77 0.00 0.00 2.66
2161 10351 5.073478 CGCGTCTGTCAGAAATAAAAGTTC 58.927 41.667 3.51 0.00 0.00 3.01
2162 10352 5.107453 CGCGTCTGTCAGAAATAAAAGTTCT 60.107 40.000 3.51 0.00 35.69 3.01
2165 10355 6.400091 CGTCTGTCAGAAATAAAAGTTCTCGG 60.400 42.308 3.51 0.00 32.96 4.63
2166 10356 6.645415 GTCTGTCAGAAATAAAAGTTCTCGGA 59.355 38.462 3.51 0.00 32.96 4.55
2167 10357 7.170998 GTCTGTCAGAAATAAAAGTTCTCGGAA 59.829 37.037 3.51 0.00 32.96 4.30
2168 10358 7.878127 TCTGTCAGAAATAAAAGTTCTCGGAAT 59.122 33.333 0.00 0.00 32.96 3.01
2170 10360 7.659799 TGTCAGAAATAAAAGTTCTCGGAATGA 59.340 33.333 0.00 0.00 32.96 2.57
2171 10361 7.958025 GTCAGAAATAAAAGTTCTCGGAATGAC 59.042 37.037 0.00 0.00 32.96 3.06
2174 10364 6.743575 AATAAAAGTTCTCGGAATGACCTG 57.256 37.500 0.00 0.00 36.31 4.00
2175 10365 4.351874 AAAAGTTCTCGGAATGACCTGA 57.648 40.909 0.00 0.00 36.31 3.86
2176 10366 4.351874 AAAGTTCTCGGAATGACCTGAA 57.648 40.909 0.00 0.00 36.31 3.02
2177 10367 4.351874 AAGTTCTCGGAATGACCTGAAA 57.648 40.909 0.00 0.00 36.31 2.69
2178 10368 3.665190 AGTTCTCGGAATGACCTGAAAC 58.335 45.455 0.00 0.00 36.31 2.78
2182 10372 3.323691 TCTCGGAATGACCTGAAACTTCA 59.676 43.478 0.00 0.00 36.31 3.02
2186 10376 4.036262 CGGAATGACCTGAAACTTCACAAA 59.964 41.667 0.00 0.00 36.31 2.83
2187 10377 5.523369 GGAATGACCTGAAACTTCACAAAG 58.477 41.667 0.00 0.00 35.70 2.77
2188 10378 5.299279 GGAATGACCTGAAACTTCACAAAGA 59.701 40.000 0.00 0.00 34.58 2.52
2189 10379 6.183360 GGAATGACCTGAAACTTCACAAAGAA 60.183 38.462 0.00 0.00 34.58 2.52
2190 10380 6.966534 ATGACCTGAAACTTCACAAAGAAT 57.033 33.333 0.00 0.00 35.25 2.40
2191 10381 8.463930 AATGACCTGAAACTTCACAAAGAATA 57.536 30.769 0.00 0.00 35.25 1.75
2192 10382 8.641498 ATGACCTGAAACTTCACAAAGAATAT 57.359 30.769 0.00 0.00 35.25 1.28
2195 10385 9.750125 GACCTGAAACTTCACAAAGAATATTTT 57.250 29.630 0.00 0.00 35.25 1.82
2229 10419 8.911247 ATAAAAATACTGGCGAAAGAATCAAC 57.089 30.769 0.00 0.00 0.00 3.18
2230 10420 4.600012 AATACTGGCGAAAGAATCAACG 57.400 40.909 0.00 0.00 0.00 4.10
2231 10421 1.878953 ACTGGCGAAAGAATCAACGT 58.121 45.000 0.00 0.00 0.00 3.99
2232 10422 1.798813 ACTGGCGAAAGAATCAACGTC 59.201 47.619 0.00 0.00 0.00 4.34
2233 10423 1.798223 CTGGCGAAAGAATCAACGTCA 59.202 47.619 0.00 0.00 38.00 4.35
2234 10424 1.798223 TGGCGAAAGAATCAACGTCAG 59.202 47.619 0.00 0.00 35.54 3.51
2235 10425 1.798813 GGCGAAAGAATCAACGTCAGT 59.201 47.619 0.00 0.00 0.00 3.41
2236 10426 2.411547 GGCGAAAGAATCAACGTCAGTG 60.412 50.000 0.00 0.00 0.00 3.66
2237 10427 2.411547 GCGAAAGAATCAACGTCAGTGG 60.412 50.000 0.00 0.00 0.00 4.00
2238 10428 2.157668 CGAAAGAATCAACGTCAGTGGG 59.842 50.000 0.00 0.00 0.00 4.61
2239 10429 1.523758 AAGAATCAACGTCAGTGGGC 58.476 50.000 0.00 0.00 0.00 5.36
2240 10430 0.321653 AGAATCAACGTCAGTGGGCC 60.322 55.000 0.00 0.00 0.00 5.80
2241 10431 1.303317 AATCAACGTCAGTGGGCCC 60.303 57.895 17.59 17.59 0.00 5.80
2242 10432 2.063015 AATCAACGTCAGTGGGCCCA 62.063 55.000 24.45 24.45 0.00 5.36
2243 10433 2.748058 ATCAACGTCAGTGGGCCCAC 62.748 60.000 42.82 42.82 46.50 4.61
2254 10444 4.660938 GGCCCACACCCTGTCCAC 62.661 72.222 0.00 0.00 0.00 4.02
2256 10446 3.238497 CCCACACCCTGTCCACGA 61.238 66.667 0.00 0.00 0.00 4.35
2257 10447 2.343758 CCACACCCTGTCCACGAG 59.656 66.667 0.00 0.00 0.00 4.18
2258 10448 2.343758 CACACCCTGTCCACGAGG 59.656 66.667 0.00 0.00 0.00 4.63
2259 10449 3.626924 ACACCCTGTCCACGAGGC 61.627 66.667 0.00 0.00 33.74 4.70
2260 10450 3.314331 CACCCTGTCCACGAGGCT 61.314 66.667 0.00 0.00 33.74 4.58
2261 10451 3.314331 ACCCTGTCCACGAGGCTG 61.314 66.667 0.00 0.00 33.74 4.85
2262 10452 4.087892 CCCTGTCCACGAGGCTGG 62.088 72.222 0.00 0.00 33.18 4.85
2263 10453 4.087892 CCTGTCCACGAGGCTGGG 62.088 72.222 0.51 0.00 33.74 4.45
2264 10454 4.087892 CTGTCCACGAGGCTGGGG 62.088 72.222 0.51 0.00 33.74 4.96
2296 10486 4.704833 CTGGGGCACACCTCCGTG 62.705 72.222 0.00 0.00 46.11 4.94
2304 10494 2.258591 CACCTCCGTGTCTCGTGG 59.741 66.667 0.00 0.00 37.94 4.94
2305 10495 2.989824 ACCTCCGTGTCTCGTGGG 60.990 66.667 7.96 5.37 36.25 4.61
2306 10496 4.436998 CCTCCGTGTCTCGTGGGC 62.437 72.222 0.00 0.00 37.94 5.36
2314 10504 4.414956 TCTCGTGGGCCCCCTGAT 62.415 66.667 22.27 0.00 36.94 2.90
2315 10505 4.181010 CTCGTGGGCCCCCTGATG 62.181 72.222 22.27 5.93 36.94 3.07
2318 10508 4.512914 GTGGGCCCCCTGATGCTC 62.513 72.222 22.27 0.00 36.94 4.26
2321 10511 4.512914 GGCCCCCTGATGCTCCAC 62.513 72.222 0.00 0.00 0.00 4.02
2322 10512 4.512914 GCCCCCTGATGCTCCACC 62.513 72.222 0.00 0.00 0.00 4.61
2323 10513 4.181010 CCCCCTGATGCTCCACCG 62.181 72.222 0.00 0.00 0.00 4.94
2324 10514 3.083349 CCCCTGATGCTCCACCGA 61.083 66.667 0.00 0.00 0.00 4.69
2325 10515 2.187946 CCCTGATGCTCCACCGAC 59.812 66.667 0.00 0.00 0.00 4.79
2326 10516 2.187946 CCTGATGCTCCACCGACC 59.812 66.667 0.00 0.00 0.00 4.79
2327 10517 2.362369 CCTGATGCTCCACCGACCT 61.362 63.158 0.00 0.00 0.00 3.85
2329 10519 1.607801 CTGATGCTCCACCGACCTCA 61.608 60.000 0.00 0.00 0.00 3.86
2330 10520 1.191489 TGATGCTCCACCGACCTCAA 61.191 55.000 0.00 0.00 0.00 3.02
2331 10521 0.741221 GATGCTCCACCGACCTCAAC 60.741 60.000 0.00 0.00 0.00 3.18
2333 10523 1.079750 GCTCCACCGACCTCAACTC 60.080 63.158 0.00 0.00 0.00 3.01
2334 10524 1.592223 CTCCACCGACCTCAACTCC 59.408 63.158 0.00 0.00 0.00 3.85
2337 10527 0.602905 CCACCGACCTCAACTCCAAC 60.603 60.000 0.00 0.00 0.00 3.77
2338 10528 0.393077 CACCGACCTCAACTCCAACT 59.607 55.000 0.00 0.00 0.00 3.16
2339 10529 0.680061 ACCGACCTCAACTCCAACTC 59.320 55.000 0.00 0.00 0.00 3.01
2340 10530 0.969894 CCGACCTCAACTCCAACTCT 59.030 55.000 0.00 0.00 0.00 3.24
2341 10531 2.168496 CCGACCTCAACTCCAACTCTA 58.832 52.381 0.00 0.00 0.00 2.43
2342 10532 2.761208 CCGACCTCAACTCCAACTCTAT 59.239 50.000 0.00 0.00 0.00 1.98
2343 10533 3.952323 CCGACCTCAACTCCAACTCTATA 59.048 47.826 0.00 0.00 0.00 1.31
2344 10534 4.585162 CCGACCTCAACTCCAACTCTATAT 59.415 45.833 0.00 0.00 0.00 0.86
2346 10536 6.434652 CCGACCTCAACTCCAACTCTATATAT 59.565 42.308 0.00 0.00 0.00 0.86
2348 10538 8.024285 CGACCTCAACTCCAACTCTATATATTC 58.976 40.741 0.00 0.00 0.00 1.75
2349 10539 8.783660 ACCTCAACTCCAACTCTATATATTCA 57.216 34.615 0.00 0.00 0.00 2.57
2351 10541 9.650539 CCTCAACTCCAACTCTATATATTCATG 57.349 37.037 0.00 0.00 0.00 3.07
2355 10545 9.698309 AACTCCAACTCTATATATTCATGTTCG 57.302 33.333 0.00 0.00 0.00 3.95
2359 10549 7.310423 CCAACTCTATATATTCATGTTCGGGGA 60.310 40.741 0.00 0.00 0.00 4.81
2360 10550 7.411486 ACTCTATATATTCATGTTCGGGGAG 57.589 40.000 0.00 0.00 0.00 4.30
2363 10553 8.430573 TCTATATATTCATGTTCGGGGAGAAA 57.569 34.615 0.00 0.00 41.10 2.52
2364 10554 8.876181 TCTATATATTCATGTTCGGGGAGAAAA 58.124 33.333 0.00 0.00 41.10 2.29
2365 10555 9.502091 CTATATATTCATGTTCGGGGAGAAAAA 57.498 33.333 0.00 0.00 41.10 1.94
2388 10578 8.928270 AAAAATCAGAGAGAATGATTCATTGC 57.072 30.769 16.41 8.36 44.57 3.56
2389 10579 5.926214 ATCAGAGAGAATGATTCATTGCG 57.074 39.130 16.41 0.00 33.60 4.85
2390 10580 4.763073 TCAGAGAGAATGATTCATTGCGT 58.237 39.130 16.41 1.36 33.90 5.24
2391 10581 5.181009 TCAGAGAGAATGATTCATTGCGTT 58.819 37.500 16.41 0.11 33.90 4.84
2394 10584 7.334171 TCAGAGAGAATGATTCATTGCGTTTTA 59.666 33.333 16.41 0.00 33.90 1.52
2395 10585 7.427606 CAGAGAGAATGATTCATTGCGTTTTAC 59.572 37.037 16.41 0.12 33.90 2.01
2397 10587 6.092122 AGAGAATGATTCATTGCGTTTTACGA 59.908 34.615 16.41 0.00 37.77 3.43
2399 10589 7.915508 AGAATGATTCATTGCGTTTTACGATA 58.084 30.769 16.41 0.00 37.77 2.92
2400 10590 7.850982 AGAATGATTCATTGCGTTTTACGATAC 59.149 33.333 16.41 0.00 37.77 2.24
2402 10592 3.910862 TCATTGCGTTTTACGATACGG 57.089 42.857 3.04 0.00 46.05 4.02
2403 10593 3.509740 TCATTGCGTTTTACGATACGGA 58.490 40.909 3.04 0.00 46.05 4.69
2404 10594 3.548668 TCATTGCGTTTTACGATACGGAG 59.451 43.478 3.04 0.00 46.05 4.63
2405 10595 1.270971 TGCGTTTTACGATACGGAGC 58.729 50.000 3.04 0.00 46.05 4.70
2406 10596 0.573987 GCGTTTTACGATACGGAGCC 59.426 55.000 3.04 0.00 46.05 4.70
2409 10599 0.528249 TTTTACGATACGGAGCCGCC 60.528 55.000 9.14 0.00 44.19 6.13
2423 10613 3.279875 CGCCGCCAAGCCCTAATC 61.280 66.667 0.00 0.00 0.00 1.75
2424 10614 2.193248 GCCGCCAAGCCCTAATCT 59.807 61.111 0.00 0.00 0.00 2.40
2425 10615 1.894282 GCCGCCAAGCCCTAATCTC 60.894 63.158 0.00 0.00 0.00 2.75
2426 10616 1.832912 CCGCCAAGCCCTAATCTCT 59.167 57.895 0.00 0.00 0.00 3.10
2427 10617 0.250081 CCGCCAAGCCCTAATCTCTC 60.250 60.000 0.00 0.00 0.00 3.20
2428 10618 0.755686 CGCCAAGCCCTAATCTCTCT 59.244 55.000 0.00 0.00 0.00 3.10
2429 10619 1.270041 CGCCAAGCCCTAATCTCTCTC 60.270 57.143 0.00 0.00 0.00 3.20
2431 10621 1.342819 CCAAGCCCTAATCTCTCTCGG 59.657 57.143 0.00 0.00 0.00 4.63
2432 10622 1.342819 CAAGCCCTAATCTCTCTCGGG 59.657 57.143 0.00 0.00 37.97 5.14
2434 10624 1.203001 AGCCCTAATCTCTCTCGGGAG 60.203 57.143 5.75 5.75 40.73 4.30
2435 10625 1.917872 CCCTAATCTCTCTCGGGAGG 58.082 60.000 13.54 3.25 39.86 4.30
2436 10626 1.549037 CCCTAATCTCTCTCGGGAGGG 60.549 61.905 13.54 9.83 41.26 4.30
2437 10627 1.253100 CTAATCTCTCTCGGGAGGGC 58.747 60.000 13.54 0.00 39.80 5.19
2438 10628 0.854218 TAATCTCTCTCGGGAGGGCT 59.146 55.000 13.54 0.00 39.80 5.19
2439 10629 0.758685 AATCTCTCTCGGGAGGGCTG 60.759 60.000 13.54 0.86 39.80 4.85
2442 10632 1.152652 TCTCTCGGGAGGGCTGATC 60.153 63.158 13.54 0.00 39.86 2.92
2446 10636 2.444706 CGGGAGGGCTGATCTGGA 60.445 66.667 1.46 0.00 0.00 3.86
2447 10637 2.506061 CGGGAGGGCTGATCTGGAG 61.506 68.421 1.46 0.00 0.00 3.86
2448 10638 1.383803 GGGAGGGCTGATCTGGAGT 60.384 63.158 1.46 0.00 0.00 3.85
2449 10639 1.406860 GGGAGGGCTGATCTGGAGTC 61.407 65.000 1.46 0.00 0.00 3.36
2450 10640 1.406860 GGAGGGCTGATCTGGAGTCC 61.407 65.000 0.73 0.73 35.21 3.85
2451 10641 1.743321 GAGGGCTGATCTGGAGTCCG 61.743 65.000 4.30 0.00 40.42 4.79
2453 10643 1.617947 GGGCTGATCTGGAGTCCGTT 61.618 60.000 4.30 0.00 0.00 4.44
2454 10644 0.179097 GGCTGATCTGGAGTCCGTTC 60.179 60.000 4.30 5.12 0.00 3.95
2455 10645 0.526524 GCTGATCTGGAGTCCGTTCG 60.527 60.000 4.30 3.20 0.00 3.95
2456 10646 1.095600 CTGATCTGGAGTCCGTTCGA 58.904 55.000 4.30 0.00 0.00 3.71
2457 10647 1.064803 CTGATCTGGAGTCCGTTCGAG 59.935 57.143 4.30 0.00 0.00 4.04
2458 10648 0.382515 GATCTGGAGTCCGTTCGAGG 59.617 60.000 4.30 0.00 0.00 4.63
2459 10649 1.668101 ATCTGGAGTCCGTTCGAGGC 61.668 60.000 4.30 0.00 0.00 4.70
2460 10650 2.282958 TGGAGTCCGTTCGAGGCT 60.283 61.111 4.30 0.00 0.00 4.58
2461 10651 2.272918 CTGGAGTCCGTTCGAGGCTC 62.273 65.000 3.87 3.87 35.30 4.70
2462 10652 2.490685 GAGTCCGTTCGAGGCTCC 59.509 66.667 9.32 0.00 32.23 4.70
2463 10653 3.398353 GAGTCCGTTCGAGGCTCCG 62.398 68.421 9.32 6.80 32.23 4.63
2464 10654 4.493747 GTCCGTTCGAGGCTCCGG 62.494 72.222 20.42 20.42 41.75 5.14
2465 10655 4.728110 TCCGTTCGAGGCTCCGGA 62.728 66.667 23.69 23.69 46.44 5.14
2466 10656 4.194720 CCGTTCGAGGCTCCGGAG 62.195 72.222 27.83 27.83 43.01 4.63
2467 10657 3.132139 CGTTCGAGGCTCCGGAGA 61.132 66.667 35.69 11.34 0.00 3.71
2468 10658 2.802106 GTTCGAGGCTCCGGAGAG 59.198 66.667 35.69 20.84 43.57 3.20
2469 10659 2.440430 TTCGAGGCTCCGGAGAGG 60.440 66.667 35.69 18.84 40.79 3.69
2470 10660 4.507916 TCGAGGCTCCGGAGAGGG 62.508 72.222 35.69 19.19 40.79 4.30
2473 10663 3.680920 GAGGCTCCGGAGAGGGGAA 62.681 68.421 35.69 0.00 46.06 3.97
2474 10664 2.446802 GGCTCCGGAGAGGGGAAT 60.447 66.667 35.69 0.00 46.06 3.01
2475 10665 2.512355 GGCTCCGGAGAGGGGAATC 61.512 68.421 35.69 14.09 46.06 2.52
2476 10666 2.512355 GCTCCGGAGAGGGGAATCC 61.512 68.421 35.69 9.98 46.06 3.01
2477 10667 1.075226 CTCCGGAGAGGGGAATCCA 60.075 63.158 28.21 0.00 46.06 3.41
2479 10669 0.471971 TCCGGAGAGGGGAATCCATC 60.472 60.000 0.00 0.00 43.71 3.51
2486 10676 3.972227 GGGAATCCATCGCCATCG 58.028 61.111 0.09 0.00 35.03 3.84
2487 10677 1.071471 GGGAATCCATCGCCATCGT 59.929 57.895 0.09 0.00 35.03 3.73
2488 10678 0.951040 GGGAATCCATCGCCATCGTC 60.951 60.000 0.09 0.00 35.03 4.20
2490 10680 1.609061 GGAATCCATCGCCATCGTCAT 60.609 52.381 0.00 0.00 36.96 3.06
2491 10681 1.728971 GAATCCATCGCCATCGTCATC 59.271 52.381 0.00 0.00 36.96 2.92
2492 10682 0.681175 ATCCATCGCCATCGTCATCA 59.319 50.000 0.00 0.00 36.96 3.07
2493 10683 0.681175 TCCATCGCCATCGTCATCAT 59.319 50.000 0.00 0.00 36.96 2.45
2494 10684 1.073964 CCATCGCCATCGTCATCATC 58.926 55.000 0.00 0.00 36.96 2.92
2496 10686 2.137523 CATCGCCATCGTCATCATCAA 58.862 47.619 0.00 0.00 36.96 2.57
2497 10687 1.856802 TCGCCATCGTCATCATCAAG 58.143 50.000 0.00 0.00 36.96 3.02
2499 10689 1.590932 GCCATCGTCATCATCAAGCT 58.409 50.000 0.00 0.00 0.00 3.74
2501 10691 2.032204 GCCATCGTCATCATCAAGCTTC 60.032 50.000 0.00 0.00 0.00 3.86
2502 10692 2.547211 CCATCGTCATCATCAAGCTTCC 59.453 50.000 0.00 0.00 0.00 3.46
2504 10694 3.170791 TCGTCATCATCAAGCTTCCTC 57.829 47.619 0.00 0.00 0.00 3.71
2505 10695 2.159043 TCGTCATCATCAAGCTTCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
2507 10697 3.743584 CGTCATCATCAAGCTTCCTCCAT 60.744 47.826 0.00 0.00 0.00 3.41
2508 10698 3.814283 GTCATCATCAAGCTTCCTCCATC 59.186 47.826 0.00 0.00 0.00 3.51
2509 10699 3.457012 TCATCATCAAGCTTCCTCCATCA 59.543 43.478 0.00 0.00 0.00 3.07
2510 10700 3.272574 TCATCAAGCTTCCTCCATCAC 57.727 47.619 0.00 0.00 0.00 3.06
2511 10701 2.092753 TCATCAAGCTTCCTCCATCACC 60.093 50.000 0.00 0.00 0.00 4.02
2512 10702 1.361204 TCAAGCTTCCTCCATCACCA 58.639 50.000 0.00 0.00 0.00 4.17
2513 10703 1.704628 TCAAGCTTCCTCCATCACCAA 59.295 47.619 0.00 0.00 0.00 3.67
2514 10704 2.309755 TCAAGCTTCCTCCATCACCAAT 59.690 45.455 0.00 0.00 0.00 3.16
2516 10706 3.463048 AGCTTCCTCCATCACCAATTT 57.537 42.857 0.00 0.00 0.00 1.82
2518 10708 3.091545 GCTTCCTCCATCACCAATTTCA 58.908 45.455 0.00 0.00 0.00 2.69
2520 10710 4.441079 GCTTCCTCCATCACCAATTTCATG 60.441 45.833 0.00 0.00 0.00 3.07
2521 10711 4.589647 TCCTCCATCACCAATTTCATGA 57.410 40.909 0.00 0.00 0.00 3.07
2522 10712 5.133383 TCCTCCATCACCAATTTCATGAT 57.867 39.130 0.00 0.00 33.28 2.45
2523 10713 4.891168 TCCTCCATCACCAATTTCATGATG 59.109 41.667 13.10 13.10 46.13 3.07
2524 10714 4.500887 CCTCCATCACCAATTTCATGATGC 60.501 45.833 14.07 0.00 45.51 3.91
2525 10715 4.283337 TCCATCACCAATTTCATGATGCT 58.717 39.130 14.07 0.00 45.51 3.79
2526 10716 4.340097 TCCATCACCAATTTCATGATGCTC 59.660 41.667 14.07 0.00 45.51 4.26
2527 10717 4.098807 CCATCACCAATTTCATGATGCTCA 59.901 41.667 14.07 0.00 45.51 4.26
2528 10718 5.221441 CCATCACCAATTTCATGATGCTCAT 60.221 40.000 14.07 0.00 45.51 2.90
2529 10719 5.509716 TCACCAATTTCATGATGCTCATC 57.490 39.130 0.00 3.03 34.28 2.92
2530 10720 4.035909 TCACCAATTTCATGATGCTCATCG 59.964 41.667 0.00 0.00 40.63 3.84
2531 10721 3.243301 ACCAATTTCATGATGCTCATCGC 60.243 43.478 0.00 0.00 40.63 4.58
2533 10723 0.939419 TTTCATGATGCTCATCGCCG 59.061 50.000 0.00 0.00 40.63 6.46
2534 10724 0.179076 TTCATGATGCTCATCGCCGT 60.179 50.000 0.00 0.00 40.63 5.68
2535 10725 0.877213 TCATGATGCTCATCGCCGTG 60.877 55.000 5.51 2.86 40.63 4.94
2536 10726 2.249535 ATGATGCTCATCGCCGTGC 61.250 57.895 5.51 0.00 40.63 5.34
2548 11718 1.713830 GCCGTGCGTGAGTAATTCC 59.286 57.895 0.00 0.00 0.00 3.01
2553 11723 2.268298 GTGCGTGAGTAATTCCATCGT 58.732 47.619 0.00 0.00 0.00 3.73
2558 11728 3.243434 CGTGAGTAATTCCATCGTAGGCT 60.243 47.826 0.00 0.00 0.00 4.58
2560 11730 4.508124 GTGAGTAATTCCATCGTAGGCTTG 59.492 45.833 0.00 0.00 0.00 4.01
2561 11731 3.467803 AGTAATTCCATCGTAGGCTTGC 58.532 45.455 0.00 0.00 0.00 4.01
2562 11732 2.717639 AATTCCATCGTAGGCTTGCT 57.282 45.000 0.00 0.00 0.00 3.91
2563 11733 1.959042 ATTCCATCGTAGGCTTGCTG 58.041 50.000 0.00 0.00 0.00 4.41
2564 11734 0.107703 TTCCATCGTAGGCTTGCTGG 60.108 55.000 0.00 0.00 0.00 4.85
2565 11735 0.975556 TCCATCGTAGGCTTGCTGGA 60.976 55.000 7.64 7.64 0.00 3.86
2566 11736 0.811616 CCATCGTAGGCTTGCTGGAC 60.812 60.000 0.00 0.00 0.00 4.02
2567 11737 1.141881 ATCGTAGGCTTGCTGGACG 59.858 57.895 0.00 0.00 34.90 4.79
2568 11738 2.298158 ATCGTAGGCTTGCTGGACGG 62.298 60.000 5.51 0.00 34.38 4.79
2569 11739 2.663196 GTAGGCTTGCTGGACGGT 59.337 61.111 0.00 0.00 0.00 4.83
2570 11740 1.741770 GTAGGCTTGCTGGACGGTG 60.742 63.158 0.00 0.00 0.00 4.94
2571 11741 1.911269 TAGGCTTGCTGGACGGTGA 60.911 57.895 0.00 0.00 0.00 4.02
2573 11743 2.401766 GGCTTGCTGGACGGTGATG 61.402 63.158 0.00 0.00 0.00 3.07
2575 11745 1.746615 CTTGCTGGACGGTGATGGG 60.747 63.158 0.00 0.00 0.00 4.00
2576 11746 2.469465 CTTGCTGGACGGTGATGGGT 62.469 60.000 0.00 0.00 0.00 4.51
2577 11747 2.063015 TTGCTGGACGGTGATGGGTT 62.063 55.000 0.00 0.00 0.00 4.11
2578 11748 2.040544 GCTGGACGGTGATGGGTTG 61.041 63.158 0.00 0.00 0.00 3.77
2579 11749 1.377202 CTGGACGGTGATGGGTTGG 60.377 63.158 0.00 0.00 0.00 3.77
2580 11750 1.836999 CTGGACGGTGATGGGTTGGA 61.837 60.000 0.00 0.00 0.00 3.53
2581 11751 1.204786 TGGACGGTGATGGGTTGGAT 61.205 55.000 0.00 0.00 0.00 3.41
2582 11752 0.834612 GGACGGTGATGGGTTGGATA 59.165 55.000 0.00 0.00 0.00 2.59
2583 11753 1.210967 GGACGGTGATGGGTTGGATAA 59.789 52.381 0.00 0.00 0.00 1.75
2584 11754 2.561569 GACGGTGATGGGTTGGATAAG 58.438 52.381 0.00 0.00 0.00 1.73
2585 11755 2.169769 GACGGTGATGGGTTGGATAAGA 59.830 50.000 0.00 0.00 0.00 2.10
2586 11756 2.777692 ACGGTGATGGGTTGGATAAGAT 59.222 45.455 0.00 0.00 0.00 2.40
2588 11758 4.207165 CGGTGATGGGTTGGATAAGATTT 58.793 43.478 0.00 0.00 0.00 2.17
2589 11759 5.104277 ACGGTGATGGGTTGGATAAGATTTA 60.104 40.000 0.00 0.00 0.00 1.40
2591 11761 6.149474 CGGTGATGGGTTGGATAAGATTTATC 59.851 42.308 1.14 1.14 0.00 1.75
2592 11762 7.004086 GGTGATGGGTTGGATAAGATTTATCA 58.996 38.462 10.11 0.00 0.00 2.15
2593 11763 7.671398 GGTGATGGGTTGGATAAGATTTATCAT 59.329 37.037 10.11 0.00 0.00 2.45
2594 11764 8.517878 GTGATGGGTTGGATAAGATTTATCATG 58.482 37.037 10.11 0.00 0.00 3.07
2595 11765 8.226810 TGATGGGTTGGATAAGATTTATCATGT 58.773 33.333 10.11 0.00 0.00 3.21
2596 11766 9.739276 GATGGGTTGGATAAGATTTATCATGTA 57.261 33.333 10.11 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 135 4.408821 TCCAGGACGCCATGCCAC 62.409 66.667 0.00 0.00 0.00 5.01
160 163 0.458543 AGTCCATCGTCGCACATCAC 60.459 55.000 0.00 0.00 0.00 3.06
200 203 2.351336 GACGCCACCACGATCCTAGG 62.351 65.000 0.82 0.82 36.70 3.02
252 255 2.639347 TCCATCTTCAGAGCAGAAACCA 59.361 45.455 0.00 0.00 0.00 3.67
426 430 1.079503 GTGCCAAATGTCCGAGTCTC 58.920 55.000 0.00 0.00 0.00 3.36
429 433 1.303317 GGGTGCCAAATGTCCGAGT 60.303 57.895 0.00 0.00 0.00 4.18
595 603 7.342581 AGGTTCCTTTGGCATCTTTTTAAAAA 58.657 30.769 12.62 12.62 0.00 1.94
596 604 6.894682 AGGTTCCTTTGGCATCTTTTTAAAA 58.105 32.000 0.00 0.00 0.00 1.52
598 606 5.011635 GGAGGTTCCTTTGGCATCTTTTTAA 59.988 40.000 0.00 0.00 32.53 1.52
599 607 4.526650 GGAGGTTCCTTTGGCATCTTTTTA 59.473 41.667 0.00 0.00 32.53 1.52
1198 7106 5.676532 TCCGGTTGTGTTGTTTATACAAG 57.323 39.130 0.00 0.00 44.53 3.16
1583 9700 0.028955 GTAAAGGAGGGGGAGGGGAT 60.029 60.000 0.00 0.00 0.00 3.85
1652 9785 4.584325 GCACATAGGCATTATTTTCAGGGA 59.416 41.667 0.00 0.00 0.00 4.20
1739 9879 8.687824 GCTAGTAAAGCTTCAAATGCAATTTA 57.312 30.769 0.00 0.00 46.13 1.40
1780 9920 1.474077 GCGCTTGGGAGTCATTTCATT 59.526 47.619 0.00 0.00 0.00 2.57
1804 9944 0.807667 CCACTCAGATTTCCGGAGCG 60.808 60.000 3.34 0.00 40.17 5.03
1937 10083 3.386237 GAGGAGCAGGAGCCGTGT 61.386 66.667 0.00 0.00 43.56 4.49
1942 10096 0.901124 TTGAAGAGAGGAGCAGGAGC 59.099 55.000 0.00 0.00 42.56 4.70
1943 10097 2.166254 GACTTGAAGAGAGGAGCAGGAG 59.834 54.545 0.00 0.00 0.00 3.69
1944 10098 2.175202 GACTTGAAGAGAGGAGCAGGA 58.825 52.381 0.00 0.00 0.00 3.86
1945 10099 1.206849 GGACTTGAAGAGAGGAGCAGG 59.793 57.143 0.00 0.00 0.00 4.85
1946 10100 1.898472 TGGACTTGAAGAGAGGAGCAG 59.102 52.381 0.00 0.00 0.00 4.24
1947 10101 2.015456 TGGACTTGAAGAGAGGAGCA 57.985 50.000 0.00 0.00 0.00 4.26
1982 10136 4.333926 GGGAGATCGATGGACTTCTTTTTG 59.666 45.833 0.54 0.00 0.00 2.44
1988 10177 2.869636 GCATGGGAGATCGATGGACTTC 60.870 54.545 0.54 0.00 33.00 3.01
2052 10241 1.338200 GGTCATCCATCGCCATAGGAC 60.338 57.143 0.00 0.00 33.57 3.85
2062 10252 1.150081 CCTGCCCTGGTCATCCATC 59.850 63.158 0.00 0.00 43.43 3.51
2102 10292 3.444034 CAGGGTAGAAGAACTCATCGTCA 59.556 47.826 0.00 0.00 38.81 4.35
2103 10293 3.444388 ACAGGGTAGAAGAACTCATCGTC 59.556 47.826 0.00 0.00 36.87 4.20
2107 10297 4.163078 CCATGACAGGGTAGAAGAACTCAT 59.837 45.833 0.00 0.00 0.00 2.90
2132 10322 0.387929 TTCTGACAGACGCGAAACCT 59.612 50.000 15.93 0.55 0.00 3.50
2141 10331 6.645415 TCCGAGAACTTTTATTTCTGACAGAC 59.355 38.462 4.15 0.00 33.30 3.51
2145 10335 7.958025 GTCATTCCGAGAACTTTTATTTCTGAC 59.042 37.037 0.00 0.00 33.30 3.51
2148 10338 7.119846 CAGGTCATTCCGAGAACTTTTATTTCT 59.880 37.037 0.00 0.00 41.99 2.52
2149 10339 7.119262 TCAGGTCATTCCGAGAACTTTTATTTC 59.881 37.037 0.00 0.00 41.99 2.17
2151 10341 6.472887 TCAGGTCATTCCGAGAACTTTTATT 58.527 36.000 0.00 0.00 41.99 1.40
2152 10342 6.049955 TCAGGTCATTCCGAGAACTTTTAT 57.950 37.500 0.00 0.00 41.99 1.40
2154 10344 4.351874 TCAGGTCATTCCGAGAACTTTT 57.648 40.909 0.00 0.00 41.99 2.27
2155 10345 4.351874 TTCAGGTCATTCCGAGAACTTT 57.648 40.909 0.00 0.00 41.99 2.66
2156 10346 4.065789 GTTTCAGGTCATTCCGAGAACTT 58.934 43.478 0.00 0.00 41.99 2.66
2158 10348 3.665190 AGTTTCAGGTCATTCCGAGAAC 58.335 45.455 0.00 0.00 41.99 3.01
2159 10349 4.202315 TGAAGTTTCAGGTCATTCCGAGAA 60.202 41.667 0.00 0.00 41.99 2.87
2160 10350 3.323691 TGAAGTTTCAGGTCATTCCGAGA 59.676 43.478 0.00 0.00 41.99 4.04
2161 10351 3.433615 GTGAAGTTTCAGGTCATTCCGAG 59.566 47.826 0.00 0.00 41.99 4.63
2162 10352 3.181459 TGTGAAGTTTCAGGTCATTCCGA 60.181 43.478 0.00 0.00 41.99 4.55
2165 10355 6.377327 TCTTTGTGAAGTTTCAGGTCATTC 57.623 37.500 0.00 0.00 37.98 2.67
2166 10356 6.773976 TTCTTTGTGAAGTTTCAGGTCATT 57.226 33.333 0.00 0.00 37.98 2.57
2167 10357 6.966534 ATTCTTTGTGAAGTTTCAGGTCAT 57.033 33.333 0.00 0.00 37.98 3.06
2168 10358 8.463930 AATATTCTTTGTGAAGTTTCAGGTCA 57.536 30.769 0.00 0.00 37.98 4.02
2203 10393 9.997482 GTTGATTCTTTCGCCAGTATTTTTATA 57.003 29.630 0.00 0.00 0.00 0.98
2205 10395 7.018826 CGTTGATTCTTTCGCCAGTATTTTTA 58.981 34.615 0.00 0.00 0.00 1.52
2207 10397 5.048991 ACGTTGATTCTTTCGCCAGTATTTT 60.049 36.000 0.00 0.00 0.00 1.82
2208 10398 4.454504 ACGTTGATTCTTTCGCCAGTATTT 59.545 37.500 0.00 0.00 0.00 1.40
2210 10400 3.596214 ACGTTGATTCTTTCGCCAGTAT 58.404 40.909 0.00 0.00 0.00 2.12
2211 10401 2.991190 GACGTTGATTCTTTCGCCAGTA 59.009 45.455 0.00 0.00 0.00 2.74
2212 10402 1.798813 GACGTTGATTCTTTCGCCAGT 59.201 47.619 0.00 0.00 0.00 4.00
2213 10403 1.798223 TGACGTTGATTCTTTCGCCAG 59.202 47.619 0.00 0.00 0.00 4.85
2215 10405 1.798813 ACTGACGTTGATTCTTTCGCC 59.201 47.619 0.00 0.00 0.00 5.54
2217 10407 2.157668 CCCACTGACGTTGATTCTTTCG 59.842 50.000 0.00 0.00 0.00 3.46
2218 10408 2.095718 GCCCACTGACGTTGATTCTTTC 60.096 50.000 0.00 0.00 0.00 2.62
2219 10409 1.880027 GCCCACTGACGTTGATTCTTT 59.120 47.619 0.00 0.00 0.00 2.52
2220 10410 1.523758 GCCCACTGACGTTGATTCTT 58.476 50.000 0.00 0.00 0.00 2.52
2221 10411 0.321653 GGCCCACTGACGTTGATTCT 60.322 55.000 0.00 0.00 0.00 2.40
2222 10412 1.305930 GGGCCCACTGACGTTGATTC 61.306 60.000 19.95 0.00 0.00 2.52
2223 10413 1.303317 GGGCCCACTGACGTTGATT 60.303 57.895 19.95 0.00 0.00 2.57
2224 10414 2.351276 GGGCCCACTGACGTTGAT 59.649 61.111 19.95 0.00 0.00 2.57
2226 10416 2.978010 GTGGGCCCACTGACGTTG 60.978 66.667 42.23 0.00 43.12 4.10
2227 10417 3.484806 TGTGGGCCCACTGACGTT 61.485 61.111 45.89 0.00 46.30 3.99
2228 10418 4.250305 GTGTGGGCCCACTGACGT 62.250 66.667 45.89 0.00 46.30 4.34
2237 10427 4.660938 GTGGACAGGGTGTGGGCC 62.661 72.222 0.00 0.00 0.00 5.80
2239 10429 3.238497 TCGTGGACAGGGTGTGGG 61.238 66.667 0.00 0.00 0.00 4.61
2240 10430 2.343758 CTCGTGGACAGGGTGTGG 59.656 66.667 0.00 0.00 0.00 4.17
2241 10431 2.343758 CCTCGTGGACAGGGTGTG 59.656 66.667 0.00 0.00 34.57 3.82
2242 10432 3.626924 GCCTCGTGGACAGGGTGT 61.627 66.667 7.92 0.00 34.57 4.16
2243 10433 3.314331 AGCCTCGTGGACAGGGTG 61.314 66.667 7.92 0.00 40.38 4.61
2244 10434 3.314331 CAGCCTCGTGGACAGGGT 61.314 66.667 7.92 0.00 42.76 4.34
2245 10435 4.087892 CCAGCCTCGTGGACAGGG 62.088 72.222 7.92 0.00 40.44 4.45
2246 10436 4.087892 CCCAGCCTCGTGGACAGG 62.088 72.222 7.92 5.10 40.44 4.00
2247 10437 4.087892 CCCCAGCCTCGTGGACAG 62.088 72.222 7.92 0.00 40.44 3.51
2279 10469 4.704833 CACGGAGGTGTGCCCCAG 62.705 72.222 0.00 0.00 39.38 4.45
2301 10491 4.512914 GAGCATCAGGGGGCCCAC 62.513 72.222 26.86 23.59 38.92 4.61
2304 10494 4.512914 GTGGAGCATCAGGGGGCC 62.513 72.222 0.00 0.00 36.25 5.80
2305 10495 4.512914 GGTGGAGCATCAGGGGGC 62.513 72.222 0.00 0.00 36.25 5.80
2306 10496 4.181010 CGGTGGAGCATCAGGGGG 62.181 72.222 0.00 0.00 36.25 5.40
2308 10498 2.187946 GTCGGTGGAGCATCAGGG 59.812 66.667 0.00 0.00 36.25 4.45
2309 10499 2.187946 GGTCGGTGGAGCATCAGG 59.812 66.667 0.00 0.00 40.40 3.86
2310 10500 1.142748 GAGGTCGGTGGAGCATCAG 59.857 63.158 0.00 0.00 43.12 2.90
2311 10501 1.191489 TTGAGGTCGGTGGAGCATCA 61.191 55.000 0.00 0.00 43.12 3.07
2312 10502 0.741221 GTTGAGGTCGGTGGAGCATC 60.741 60.000 0.00 0.00 43.12 3.91
2313 10503 1.194781 AGTTGAGGTCGGTGGAGCAT 61.195 55.000 0.00 0.00 43.12 3.79
2314 10504 1.816863 GAGTTGAGGTCGGTGGAGCA 61.817 60.000 0.00 0.00 43.12 4.26
2315 10505 1.079750 GAGTTGAGGTCGGTGGAGC 60.080 63.158 0.00 0.00 40.99 4.70
2316 10506 1.185618 TGGAGTTGAGGTCGGTGGAG 61.186 60.000 0.00 0.00 0.00 3.86
2317 10507 0.761323 TTGGAGTTGAGGTCGGTGGA 60.761 55.000 0.00 0.00 0.00 4.02
2318 10508 0.602905 GTTGGAGTTGAGGTCGGTGG 60.603 60.000 0.00 0.00 0.00 4.61
2320 10510 0.680061 GAGTTGGAGTTGAGGTCGGT 59.320 55.000 0.00 0.00 0.00 4.69
2321 10511 0.969894 AGAGTTGGAGTTGAGGTCGG 59.030 55.000 0.00 0.00 0.00 4.79
2322 10512 5.776173 ATATAGAGTTGGAGTTGAGGTCG 57.224 43.478 0.00 0.00 0.00 4.79
2323 10513 8.861086 TGAATATATAGAGTTGGAGTTGAGGTC 58.139 37.037 0.00 0.00 0.00 3.85
2324 10514 8.783660 TGAATATATAGAGTTGGAGTTGAGGT 57.216 34.615 0.00 0.00 0.00 3.85
2325 10515 9.650539 CATGAATATATAGAGTTGGAGTTGAGG 57.349 37.037 0.00 0.00 0.00 3.86
2329 10519 9.698309 CGAACATGAATATATAGAGTTGGAGTT 57.302 33.333 0.00 0.00 0.00 3.01
2330 10520 8.307483 CCGAACATGAATATATAGAGTTGGAGT 58.693 37.037 0.00 0.00 0.00 3.85
2331 10521 7.761704 CCCGAACATGAATATATAGAGTTGGAG 59.238 40.741 0.00 0.00 0.00 3.86
2333 10523 6.818644 CCCCGAACATGAATATATAGAGTTGG 59.181 42.308 0.00 0.00 0.00 3.77
2334 10524 7.611770 TCCCCGAACATGAATATATAGAGTTG 58.388 38.462 0.00 0.00 0.00 3.16
2337 10527 7.646548 TCTCCCCGAACATGAATATATAGAG 57.353 40.000 0.00 0.00 0.00 2.43
2338 10528 8.430573 TTTCTCCCCGAACATGAATATATAGA 57.569 34.615 0.00 0.00 0.00 1.98
2339 10529 9.502091 TTTTTCTCCCCGAACATGAATATATAG 57.498 33.333 0.00 0.00 0.00 1.31
2363 10553 7.701078 CGCAATGAATCATTCTCTCTGATTTTT 59.299 33.333 5.36 0.00 42.03 1.94
2364 10554 7.148120 ACGCAATGAATCATTCTCTCTGATTTT 60.148 33.333 5.36 0.00 42.03 1.82
2365 10555 6.318144 ACGCAATGAATCATTCTCTCTGATTT 59.682 34.615 5.36 0.00 42.03 2.17
2366 10556 5.821470 ACGCAATGAATCATTCTCTCTGATT 59.179 36.000 5.36 0.00 44.04 2.57
2368 10558 4.763073 ACGCAATGAATCATTCTCTCTGA 58.237 39.130 5.36 0.00 31.05 3.27
2369 10559 5.481200 AACGCAATGAATCATTCTCTCTG 57.519 39.130 5.36 0.00 31.05 3.35
2370 10560 6.506500 AAAACGCAATGAATCATTCTCTCT 57.493 33.333 5.36 0.00 31.05 3.10
2374 10564 6.176975 TCGTAAAACGCAATGAATCATTCT 57.823 33.333 5.36 0.00 42.21 2.40
2375 10565 7.149509 CGTATCGTAAAACGCAATGAATCATTC 60.150 37.037 5.36 1.03 42.21 2.67
2379 10569 4.896238 CCGTATCGTAAAACGCAATGAATC 59.104 41.667 0.00 0.00 42.21 2.52
2380 10570 4.567558 TCCGTATCGTAAAACGCAATGAAT 59.432 37.500 0.00 0.00 42.21 2.57
2381 10571 3.925299 TCCGTATCGTAAAACGCAATGAA 59.075 39.130 0.00 0.00 42.21 2.57
2382 10572 3.509740 TCCGTATCGTAAAACGCAATGA 58.490 40.909 0.00 0.00 42.21 2.57
2383 10573 3.839954 GCTCCGTATCGTAAAACGCAATG 60.840 47.826 0.00 0.00 42.21 2.82
2384 10574 2.283351 GCTCCGTATCGTAAAACGCAAT 59.717 45.455 0.00 0.00 42.21 3.56
2385 10575 1.655099 GCTCCGTATCGTAAAACGCAA 59.345 47.619 0.00 0.00 42.21 4.85
2386 10576 1.270971 GCTCCGTATCGTAAAACGCA 58.729 50.000 0.00 0.00 42.21 5.24
2387 10577 0.573987 GGCTCCGTATCGTAAAACGC 59.426 55.000 0.00 0.00 42.21 4.84
2388 10578 0.841984 CGGCTCCGTATCGTAAAACG 59.158 55.000 0.00 0.00 37.54 3.60
2389 10579 0.573987 GCGGCTCCGTATCGTAAAAC 59.426 55.000 10.24 0.00 42.09 2.43
2390 10580 0.528249 GGCGGCTCCGTATCGTAAAA 60.528 55.000 10.24 0.00 42.09 1.52
2391 10581 1.066257 GGCGGCTCCGTATCGTAAA 59.934 57.895 10.24 0.00 42.09 2.01
2405 10595 4.875713 ATTAGGGCTTGGCGGCGG 62.876 66.667 9.78 0.30 39.52 6.13
2406 10596 3.279875 GATTAGGGCTTGGCGGCG 61.280 66.667 0.51 0.51 39.52 6.46
2409 10599 0.755686 AGAGAGATTAGGGCTTGGCG 59.244 55.000 0.00 0.00 0.00 5.69
2411 10601 1.342819 CCGAGAGAGATTAGGGCTTGG 59.657 57.143 0.00 0.00 0.00 3.61
2412 10602 1.342819 CCCGAGAGAGATTAGGGCTTG 59.657 57.143 0.00 0.00 35.09 4.01
2413 10603 1.218196 TCCCGAGAGAGATTAGGGCTT 59.782 52.381 0.00 0.00 41.76 4.35
2414 10604 0.854218 TCCCGAGAGAGATTAGGGCT 59.146 55.000 0.00 0.00 41.76 5.19
2415 10605 1.253100 CTCCCGAGAGAGATTAGGGC 58.747 60.000 0.00 0.00 43.39 5.19
2417 10607 1.917872 CCCTCCCGAGAGAGATTAGG 58.082 60.000 0.00 0.00 43.39 2.69
2418 10608 1.203001 AGCCCTCCCGAGAGAGATTAG 60.203 57.143 0.00 0.00 43.39 1.73
2419 10609 0.854218 AGCCCTCCCGAGAGAGATTA 59.146 55.000 0.00 0.00 43.39 1.75
2421 10611 1.152567 CAGCCCTCCCGAGAGAGAT 60.153 63.158 0.00 0.00 43.39 2.75
2423 10613 1.152567 ATCAGCCCTCCCGAGAGAG 60.153 63.158 0.00 0.00 43.39 3.20
2424 10614 1.152652 GATCAGCCCTCCCGAGAGA 60.153 63.158 0.00 0.00 43.39 3.10
2425 10615 1.152567 AGATCAGCCCTCCCGAGAG 60.153 63.158 0.00 0.00 40.09 3.20
2426 10616 1.456518 CAGATCAGCCCTCCCGAGA 60.457 63.158 0.00 0.00 0.00 4.04
2427 10617 2.506061 CCAGATCAGCCCTCCCGAG 61.506 68.421 0.00 0.00 0.00 4.63
2428 10618 2.444706 CCAGATCAGCCCTCCCGA 60.445 66.667 0.00 0.00 0.00 5.14
2429 10619 2.444706 TCCAGATCAGCCCTCCCG 60.445 66.667 0.00 0.00 0.00 5.14
2431 10621 1.406860 GGACTCCAGATCAGCCCTCC 61.407 65.000 0.00 0.00 0.00 4.30
2432 10622 1.743321 CGGACTCCAGATCAGCCCTC 61.743 65.000 0.00 0.00 0.00 4.30
2434 10624 1.617947 AACGGACTCCAGATCAGCCC 61.618 60.000 0.00 0.00 0.00 5.19
2435 10625 0.179097 GAACGGACTCCAGATCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
2436 10626 0.526524 CGAACGGACTCCAGATCAGC 60.527 60.000 0.00 0.00 0.00 4.26
2437 10627 1.064803 CTCGAACGGACTCCAGATCAG 59.935 57.143 0.00 0.00 0.00 2.90
2438 10628 1.095600 CTCGAACGGACTCCAGATCA 58.904 55.000 0.00 0.00 0.00 2.92
2439 10629 0.382515 CCTCGAACGGACTCCAGATC 59.617 60.000 0.00 0.00 0.00 2.75
2442 10632 2.182030 GCCTCGAACGGACTCCAG 59.818 66.667 0.00 0.00 0.00 3.86
2446 10636 3.441290 CGGAGCCTCGAACGGACT 61.441 66.667 0.00 0.00 0.00 3.85
2450 10640 3.114647 CTCTCCGGAGCCTCGAACG 62.115 68.421 27.39 0.19 32.43 3.95
2451 10641 2.776913 CCTCTCCGGAGCCTCGAAC 61.777 68.421 27.39 0.00 38.21 3.95
2453 10643 4.507916 CCCTCTCCGGAGCCTCGA 62.508 72.222 27.39 8.47 38.21 4.04
2455 10645 2.956077 ATTCCCCTCTCCGGAGCCTC 62.956 65.000 27.39 0.00 38.21 4.70
2456 10646 2.956077 GATTCCCCTCTCCGGAGCCT 62.956 65.000 27.39 5.33 38.21 4.58
2457 10647 2.446802 ATTCCCCTCTCCGGAGCC 60.447 66.667 27.39 0.00 38.21 4.70
2458 10648 2.512355 GGATTCCCCTCTCCGGAGC 61.512 68.421 27.39 9.73 38.21 4.70
2459 10649 0.472734 ATGGATTCCCCTCTCCGGAG 60.473 60.000 26.32 26.32 39.18 4.63
2460 10650 0.471971 GATGGATTCCCCTCTCCGGA 60.472 60.000 2.93 2.93 34.05 5.14
2461 10651 1.821061 CGATGGATTCCCCTCTCCGG 61.821 65.000 0.00 0.00 34.05 5.14
2462 10652 1.668294 CGATGGATTCCCCTCTCCG 59.332 63.158 0.00 0.00 34.05 4.63
2463 10653 1.373059 GCGATGGATTCCCCTCTCC 59.627 63.158 0.00 0.00 35.38 3.71
2464 10654 1.373059 GGCGATGGATTCCCCTCTC 59.627 63.158 0.00 0.00 35.38 3.20
2465 10655 0.769776 ATGGCGATGGATTCCCCTCT 60.770 55.000 0.00 0.00 35.38 3.69
2466 10656 0.322008 GATGGCGATGGATTCCCCTC 60.322 60.000 0.00 0.00 35.38 4.30
2467 10657 1.763770 GATGGCGATGGATTCCCCT 59.236 57.895 0.00 0.00 35.38 4.79
2468 10658 1.672356 CGATGGCGATGGATTCCCC 60.672 63.158 0.00 0.00 40.82 4.81
2469 10659 0.951040 GACGATGGCGATGGATTCCC 60.951 60.000 0.00 0.00 41.64 3.97
2470 10660 0.249868 TGACGATGGCGATGGATTCC 60.250 55.000 0.00 0.00 41.64 3.01
2471 10661 1.728971 GATGACGATGGCGATGGATTC 59.271 52.381 0.00 0.00 41.64 2.52
2473 10663 0.681175 TGATGACGATGGCGATGGAT 59.319 50.000 0.00 0.00 41.64 3.41
2474 10664 0.681175 ATGATGACGATGGCGATGGA 59.319 50.000 0.00 0.00 41.64 3.41
2475 10665 1.073964 GATGATGACGATGGCGATGG 58.926 55.000 0.00 0.00 41.64 3.51
2476 10666 1.787012 TGATGATGACGATGGCGATG 58.213 50.000 0.00 0.00 41.64 3.84
2477 10667 2.410939 CTTGATGATGACGATGGCGAT 58.589 47.619 0.00 0.00 41.64 4.58
2479 10669 0.234106 GCTTGATGATGACGATGGCG 59.766 55.000 0.00 0.00 44.79 5.69
2480 10670 1.590932 AGCTTGATGATGACGATGGC 58.409 50.000 0.00 0.00 0.00 4.40
2481 10671 2.547211 GGAAGCTTGATGATGACGATGG 59.453 50.000 2.10 0.00 0.00 3.51
2482 10672 3.464907 AGGAAGCTTGATGATGACGATG 58.535 45.455 2.10 0.00 0.00 3.84
2484 10674 2.159043 GGAGGAAGCTTGATGATGACGA 60.159 50.000 2.10 0.00 0.00 4.20
2486 10676 3.272574 TGGAGGAAGCTTGATGATGAC 57.727 47.619 2.10 0.00 0.00 3.06
2487 10677 3.457012 TGATGGAGGAAGCTTGATGATGA 59.543 43.478 2.10 0.00 0.00 2.92
2488 10678 3.564644 GTGATGGAGGAAGCTTGATGATG 59.435 47.826 2.10 0.00 0.00 3.07
2490 10680 2.092753 GGTGATGGAGGAAGCTTGATGA 60.093 50.000 2.10 0.00 0.00 2.92
2491 10681 2.295885 GGTGATGGAGGAAGCTTGATG 58.704 52.381 2.10 0.00 0.00 3.07
2492 10682 1.918262 TGGTGATGGAGGAAGCTTGAT 59.082 47.619 2.10 0.00 0.00 2.57
2493 10683 1.361204 TGGTGATGGAGGAAGCTTGA 58.639 50.000 2.10 0.00 0.00 3.02
2494 10684 2.205022 TTGGTGATGGAGGAAGCTTG 57.795 50.000 2.10 0.00 0.00 4.01
2496 10686 3.245371 TGAAATTGGTGATGGAGGAAGCT 60.245 43.478 0.00 0.00 0.00 3.74
2497 10687 3.091545 TGAAATTGGTGATGGAGGAAGC 58.908 45.455 0.00 0.00 0.00 3.86
2499 10689 4.933134 TCATGAAATTGGTGATGGAGGAA 58.067 39.130 0.00 0.00 0.00 3.36
2501 10691 4.500887 GCATCATGAAATTGGTGATGGAGG 60.501 45.833 20.47 5.18 45.76 4.30
2502 10692 4.341235 AGCATCATGAAATTGGTGATGGAG 59.659 41.667 20.47 5.43 45.76 3.86
2504 10694 4.098807 TGAGCATCATGAAATTGGTGATGG 59.901 41.667 20.47 9.53 45.76 3.51
2530 10720 1.017177 TGGAATTACTCACGCACGGC 61.017 55.000 0.00 0.00 0.00 5.68
2531 10721 1.593006 GATGGAATTACTCACGCACGG 59.407 52.381 0.00 0.00 0.00 4.94
2533 10723 2.268298 ACGATGGAATTACTCACGCAC 58.732 47.619 0.00 0.00 0.00 5.34
2534 10724 2.665649 ACGATGGAATTACTCACGCA 57.334 45.000 0.00 0.00 0.00 5.24
2535 10725 3.050619 CCTACGATGGAATTACTCACGC 58.949 50.000 0.00 0.00 0.00 5.34
2536 10726 3.050619 GCCTACGATGGAATTACTCACG 58.949 50.000 0.00 0.00 0.00 4.35
2537 10727 4.323553 AGCCTACGATGGAATTACTCAC 57.676 45.455 0.00 0.00 0.00 3.51
2538 10728 4.693283 CAAGCCTACGATGGAATTACTCA 58.307 43.478 0.00 0.00 0.00 3.41
2539 10729 3.495001 GCAAGCCTACGATGGAATTACTC 59.505 47.826 0.00 0.00 0.00 2.59
2544 11714 1.475751 CCAGCAAGCCTACGATGGAAT 60.476 52.381 0.00 0.00 0.00 3.01
2545 11715 0.107703 CCAGCAAGCCTACGATGGAA 60.108 55.000 0.00 0.00 0.00 3.53
2546 11716 0.975556 TCCAGCAAGCCTACGATGGA 60.976 55.000 0.00 0.00 34.54 3.41
2548 11718 1.148157 CGTCCAGCAAGCCTACGATG 61.148 60.000 5.77 0.00 35.66 3.84
2553 11723 1.264749 ATCACCGTCCAGCAAGCCTA 61.265 55.000 0.00 0.00 0.00 3.93
2558 11728 2.063015 AACCCATCACCGTCCAGCAA 62.063 55.000 0.00 0.00 0.00 3.91
2560 11730 2.040544 CAACCCATCACCGTCCAGC 61.041 63.158 0.00 0.00 0.00 4.85
2561 11731 1.377202 CCAACCCATCACCGTCCAG 60.377 63.158 0.00 0.00 0.00 3.86
2562 11732 1.204786 ATCCAACCCATCACCGTCCA 61.205 55.000 0.00 0.00 0.00 4.02
2563 11733 0.834612 TATCCAACCCATCACCGTCC 59.165 55.000 0.00 0.00 0.00 4.79
2564 11734 2.169769 TCTTATCCAACCCATCACCGTC 59.830 50.000 0.00 0.00 0.00 4.79
2565 11735 2.193127 TCTTATCCAACCCATCACCGT 58.807 47.619 0.00 0.00 0.00 4.83
2566 11736 3.492102 ATCTTATCCAACCCATCACCG 57.508 47.619 0.00 0.00 0.00 4.94
2567 11737 7.004086 TGATAAATCTTATCCAACCCATCACC 58.996 38.462 4.40 0.00 0.00 4.02
2568 11738 8.517878 CATGATAAATCTTATCCAACCCATCAC 58.482 37.037 4.40 0.00 0.00 3.06
2569 11739 8.226810 ACATGATAAATCTTATCCAACCCATCA 58.773 33.333 0.00 0.00 0.00 3.07
2570 11740 8.641498 ACATGATAAATCTTATCCAACCCATC 57.359 34.615 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.