Multiple sequence alignment - TraesCS6A01G002800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G002800 chr6A 100.000 3112 0 0 1 3112 1055891 1059002 0.000000e+00 5747.0
1 TraesCS6A01G002800 chr6A 82.461 707 73 18 1 705 1084847 1085504 3.480000e-159 571.0
2 TraesCS6A01G002800 chr6A 84.466 206 30 2 172 377 454935457 454935660 5.260000e-48 202.0
3 TraesCS6A01G002800 chr6A 83.254 209 15 7 1033 1234 1247443 1247638 1.150000e-39 174.0
4 TraesCS6A01G002800 chr6B 87.865 1129 90 19 803 1907 5550800 5551905 0.000000e+00 1282.0
5 TraesCS6A01G002800 chr6B 91.347 913 54 12 1011 1907 5057327 5058230 0.000000e+00 1225.0
6 TraesCS6A01G002800 chr6B 92.025 790 54 3 1129 1909 2782878 2783667 0.000000e+00 1101.0
7 TraesCS6A01G002800 chr6B 82.543 527 72 11 1018 1543 2160868 2161375 2.200000e-121 446.0
8 TraesCS6A01G002800 chr6B 91.463 246 12 3 2873 3110 5083788 5084032 2.310000e-86 329.0
9 TraesCS6A01G002800 chr6B 84.500 200 30 1 177 376 298312049 298311851 2.450000e-46 196.0
10 TraesCS6A01G002800 chr6B 93.827 81 4 1 1 81 5056199 5056278 1.520000e-23 121.0
11 TraesCS6A01G002800 chr6B 93.590 78 4 1 1 78 5540285 5540361 7.050000e-22 115.0
12 TraesCS6A01G002800 chr6D 91.188 783 42 5 800 1571 1572637 1571871 0.000000e+00 1038.0
13 TraesCS6A01G002800 chr6D 88.394 853 69 23 2039 2873 1569910 1569070 0.000000e+00 1000.0
14 TraesCS6A01G002800 chr6D 82.216 731 50 19 1 705 1573441 1572765 9.750000e-155 556.0
15 TraesCS6A01G002800 chr6D 77.508 947 137 32 931 1830 681196 680279 1.670000e-137 499.0
16 TraesCS6A01G002800 chr6D 93.115 305 14 5 1597 1896 1571887 1571585 1.020000e-119 440.0
17 TraesCS6A01G002800 chr6D 86.885 244 25 5 1814 2056 1571626 1571389 1.840000e-67 267.0
18 TraesCS6A01G002800 chr6D 93.878 49 3 0 674 722 1572727 1572679 1.200000e-09 75.0
19 TraesCS6A01G002800 chr1A 80.079 758 118 22 1009 1743 2185499 2184752 1.640000e-147 532.0
20 TraesCS6A01G002800 chrUn 78.261 621 103 25 1037 1634 47727677 47727066 1.360000e-98 370.0
21 TraesCS6A01G002800 chrUn 78.261 621 103 25 1037 1634 47872904 47873515 1.360000e-98 370.0
22 TraesCS6A01G002800 chrUn 89.189 74 8 0 523 596 47727819 47727746 3.300000e-15 93.5
23 TraesCS6A01G002800 chrUn 89.189 74 8 0 523 596 47872762 47872835 3.300000e-15 93.5
24 TraesCS6A01G002800 chr4D 89.756 205 19 2 173 377 227308609 227308811 8.560000e-66 261.0
25 TraesCS6A01G002800 chr4D 89.091 55 6 0 523 577 2074347 2074293 5.570000e-08 69.4
26 TraesCS6A01G002800 chr3D 88.670 203 20 3 171 372 548578497 548578697 8.620000e-61 244.0
27 TraesCS6A01G002800 chr3D 83.902 205 32 1 174 378 112711968 112712171 8.810000e-46 195.0
28 TraesCS6A01G002800 chr1D 85.500 200 27 2 177 376 58941002 58940805 1.130000e-49 207.0
29 TraesCS6A01G002800 chr3A 83.810 210 32 2 177 385 636738542 636738334 6.810000e-47 198.0
30 TraesCS6A01G002800 chr2B 84.577 201 30 1 177 377 91278562 91278363 6.810000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G002800 chr6A 1055891 1059002 3111 False 5747.000000 5747 100.000000 1 3112 1 chr6A.!!$F1 3111
1 TraesCS6A01G002800 chr6A 1084847 1085504 657 False 571.000000 571 82.461000 1 705 1 chr6A.!!$F2 704
2 TraesCS6A01G002800 chr6B 5550800 5551905 1105 False 1282.000000 1282 87.865000 803 1907 1 chr6B.!!$F5 1104
3 TraesCS6A01G002800 chr6B 2782878 2783667 789 False 1101.000000 1101 92.025000 1129 1909 1 chr6B.!!$F2 780
4 TraesCS6A01G002800 chr6B 5056199 5058230 2031 False 673.000000 1225 92.587000 1 1907 2 chr6B.!!$F6 1906
5 TraesCS6A01G002800 chr6B 2160868 2161375 507 False 446.000000 446 82.543000 1018 1543 1 chr6B.!!$F1 525
6 TraesCS6A01G002800 chr6D 1569070 1573441 4371 True 562.666667 1038 89.279333 1 2873 6 chr6D.!!$R2 2872
7 TraesCS6A01G002800 chr6D 680279 681196 917 True 499.000000 499 77.508000 931 1830 1 chr6D.!!$R1 899
8 TraesCS6A01G002800 chr1A 2184752 2185499 747 True 532.000000 532 80.079000 1009 1743 1 chr1A.!!$R1 734
9 TraesCS6A01G002800 chrUn 47727066 47727819 753 True 231.750000 370 83.725000 523 1634 2 chrUn.!!$R1 1111
10 TraesCS6A01G002800 chrUn 47872762 47873515 753 False 231.750000 370 83.725000 523 1634 2 chrUn.!!$F1 1111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 848 1.136336 GGATGTGTGAAACGACTTCGC 60.136 52.381 0.0 8.11 42.39 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 4434 0.394488 CTCAGAGTCCCACGCCTAGA 60.394 60.0 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.170320 TCAAACTTTACTTCGTTAAAGCTCGAT 59.830 33.333 11.40 0.00 38.67 3.59
71 72 3.996621 CCCATGGGCCAACAGGGT 61.997 66.667 25.79 1.66 40.55 4.34
163 164 3.198417 ACGATTGGGTTTATAAGTCGGGT 59.802 43.478 0.00 0.00 32.42 5.28
164 165 3.558418 CGATTGGGTTTATAAGTCGGGTG 59.442 47.826 0.00 0.00 0.00 4.61
244 245 4.674101 GCAAATGCGAAATGTTGGCTAGTA 60.674 41.667 0.00 0.00 35.24 1.82
356 357 4.500396 GGCAATGCCGAATGTTGG 57.500 55.556 9.14 0.00 39.62 3.77
383 384 6.299141 TGAAACCAATTATGATCTAGGCCTC 58.701 40.000 9.68 0.00 0.00 4.70
397 398 3.199880 AGGCCTCCGATTTGACTAATG 57.800 47.619 0.00 0.00 0.00 1.90
401 402 4.580580 GGCCTCCGATTTGACTAATGAAAT 59.419 41.667 0.00 0.00 0.00 2.17
624 653 2.391616 TGCATCTCAAGTAGGCACAG 57.608 50.000 0.00 0.00 0.00 3.66
641 670 7.308450 AGGCACAGAGATATACATACACATT 57.692 36.000 0.00 0.00 0.00 2.71
667 696 5.628797 ACAATTTGTGAAATCCCCAAACT 57.371 34.783 0.15 0.00 31.50 2.66
708 812 5.993748 TGAAATCCCCAAACCTACAATTC 57.006 39.130 0.00 0.00 0.00 2.17
709 813 5.650283 TGAAATCCCCAAACCTACAATTCT 58.350 37.500 0.00 0.00 0.00 2.40
720 824 9.892130 CCAAACCTACAATTCTCTAGTAATTCT 57.108 33.333 3.73 0.00 0.00 2.40
736 840 6.970484 AGTAATTCTTGTGGATGTGTGAAAC 58.030 36.000 0.00 0.00 37.35 2.78
738 842 3.186702 TCTTGTGGATGTGTGAAACGA 57.813 42.857 0.00 0.00 42.39 3.85
744 848 1.136336 GGATGTGTGAAACGACTTCGC 60.136 52.381 0.00 8.11 42.39 4.70
752 856 2.991190 TGAAACGACTTCGCAGGTTATC 59.009 45.455 0.00 0.00 44.43 1.75
758 862 3.795101 CGACTTCGCAGGTTATCGTTAAT 59.205 43.478 0.00 0.00 0.00 1.40
761 865 6.140303 ACTTCGCAGGTTATCGTTAATCTA 57.860 37.500 0.00 0.00 27.43 1.98
766 870 5.061064 CGCAGGTTATCGTTAATCTAGCATC 59.939 44.000 15.14 0.50 29.97 3.91
777 881 8.508062 TCGTTAATCTAGCATCTTACAGATCTC 58.492 37.037 0.00 0.00 31.32 2.75
779 883 5.895636 ATCTAGCATCTTACAGATCTCCG 57.104 43.478 0.00 0.00 31.32 4.63
780 884 4.720046 TCTAGCATCTTACAGATCTCCGT 58.280 43.478 0.00 0.00 31.32 4.69
783 887 5.854010 AGCATCTTACAGATCTCCGTTAA 57.146 39.130 0.00 0.00 31.32 2.01
784 888 6.412362 AGCATCTTACAGATCTCCGTTAAT 57.588 37.500 0.00 0.00 31.32 1.40
786 890 6.266558 AGCATCTTACAGATCTCCGTTAATCT 59.733 38.462 0.00 0.00 31.32 2.40
787 891 7.448777 AGCATCTTACAGATCTCCGTTAATCTA 59.551 37.037 0.00 0.00 31.32 1.98
788 892 7.753132 GCATCTTACAGATCTCCGTTAATCTAG 59.247 40.741 0.00 0.00 31.32 2.43
789 893 7.204496 TCTTACAGATCTCCGTTAATCTAGC 57.796 40.000 0.00 0.00 31.10 3.42
791 895 7.448777 TCTTACAGATCTCCGTTAATCTAGCAT 59.551 37.037 0.00 0.00 31.10 3.79
792 896 6.412362 ACAGATCTCCGTTAATCTAGCATT 57.588 37.500 0.00 0.00 31.10 3.56
793 897 6.821388 ACAGATCTCCGTTAATCTAGCATTT 58.179 36.000 0.00 0.00 31.10 2.32
794 898 7.275920 ACAGATCTCCGTTAATCTAGCATTTT 58.724 34.615 0.00 0.00 31.10 1.82
796 900 8.704234 CAGATCTCCGTTAATCTAGCATTTTAC 58.296 37.037 0.00 0.00 31.10 2.01
797 901 8.421784 AGATCTCCGTTAATCTAGCATTTTACA 58.578 33.333 0.00 0.00 30.50 2.41
798 902 8.594881 ATCTCCGTTAATCTAGCATTTTACAG 57.405 34.615 0.00 0.00 0.00 2.74
904 1021 7.823665 CATGTATAAATGCATAGCCATGTTCT 58.176 34.615 0.00 0.00 34.40 3.01
910 1027 2.702478 TGCATAGCCATGTTCTAGCTCT 59.298 45.455 0.00 0.00 38.06 4.09
911 1028 3.135348 TGCATAGCCATGTTCTAGCTCTT 59.865 43.478 0.00 0.00 38.06 2.85
912 1029 4.344968 TGCATAGCCATGTTCTAGCTCTTA 59.655 41.667 0.00 0.00 38.06 2.10
913 1030 5.163311 TGCATAGCCATGTTCTAGCTCTTAA 60.163 40.000 0.00 0.00 38.06 1.85
1074 1634 3.254411 TCTTGCTCTCTGCCATATACTCG 59.746 47.826 0.00 0.00 42.00 4.18
1085 1649 5.183969 TGCCATATACTCGTACTAGCTAGG 58.816 45.833 24.35 8.88 0.00 3.02
1086 1650 5.184711 GCCATATACTCGTACTAGCTAGGT 58.815 45.833 24.35 14.09 0.00 3.08
1087 1651 6.070596 TGCCATATACTCGTACTAGCTAGGTA 60.071 42.308 24.35 15.69 0.00 3.08
1088 1652 6.479660 GCCATATACTCGTACTAGCTAGGTAG 59.520 46.154 24.12 24.12 0.00 3.18
1142 1706 0.758734 TCACCAAGTAGCAGTGCAGT 59.241 50.000 19.20 3.45 0.00 4.40
1248 1815 4.777384 TGCAACTCGACATGCAGT 57.223 50.000 14.58 0.00 46.87 4.40
1326 1902 3.907260 CTTGGGCTGCCTCGAAGCA 62.907 63.158 19.68 8.69 42.69 3.91
1335 1911 2.938451 CTGCCTCGAAGCATACAAATCA 59.062 45.455 9.56 0.00 43.09 2.57
1470 2049 4.994201 GAGTCGCCGACGTGCACA 62.994 66.667 18.64 0.00 41.18 4.57
1642 2246 6.700960 CCAACATGCAGTGTAATTTTCTTCAA 59.299 34.615 0.00 0.00 41.14 2.69
1909 2567 9.661954 CTATATATGTCATACCCCTCCAAGTAT 57.338 37.037 0.00 0.00 0.00 2.12
2034 2692 4.099419 AGAAGGTTGTGGATTGGTCAAAAC 59.901 41.667 0.00 0.00 32.96 2.43
2044 4198 2.820845 GGTCAAAACCAAGGCAGGT 58.179 52.632 0.00 0.00 45.68 4.00
2107 4261 4.813697 TGTGATAAGCAAAACAAAAAGGGC 59.186 37.500 0.00 0.00 0.00 5.19
2113 4267 5.657826 AGCAAAACAAAAAGGGCAAAAAT 57.342 30.435 0.00 0.00 0.00 1.82
2177 4331 0.901124 AGTTTGGTGGCACTTGCAAA 59.099 45.000 18.45 15.85 44.36 3.68
2193 4347 6.310956 CACTTGCAAAATTGTGAGAGAAACAA 59.689 34.615 10.22 0.00 41.50 2.83
2228 4382 7.124147 ACAGAAACCAGAAAAGAAGGAAAATGA 59.876 33.333 0.00 0.00 0.00 2.57
2229 4383 7.436376 CAGAAACCAGAAAAGAAGGAAAATGAC 59.564 37.037 0.00 0.00 0.00 3.06
2238 4392 5.596836 AGAAGGAAAATGACACTTGCAAA 57.403 34.783 0.00 0.00 0.00 3.68
2278 4434 5.416271 AAAGACCCACGTATGTAAGACAT 57.584 39.130 0.00 0.00 42.35 3.06
2294 4450 0.033011 ACATCTAGGCGTGGGACTCT 60.033 55.000 0.00 0.00 30.49 3.24
2300 4456 2.680352 GCGTGGGACTCTGAGGGA 60.680 66.667 9.85 0.00 0.00 4.20
2378 4534 6.254804 GTGCTTAAAACTGGTTTTGGTTACAG 59.745 38.462 18.17 0.00 42.18 2.74
2395 4551 1.045407 CAGGCCGGGCTGTAAGTATA 58.955 55.000 41.61 0.00 35.30 1.47
2398 4554 1.494824 GCCGGGCTGTAAGTATAACG 58.505 55.000 12.87 0.00 35.30 3.18
2407 4563 6.860023 GGGCTGTAAGTATAACGTATGTGTAG 59.140 42.308 0.00 0.00 35.30 2.74
2445 4601 6.992715 CGGGTCATTTTAGTTCTAGATCCATT 59.007 38.462 0.00 0.00 0.00 3.16
2446 4602 8.148351 CGGGTCATTTTAGTTCTAGATCCATTA 58.852 37.037 0.00 0.00 0.00 1.90
2453 4609 8.818141 TTTAGTTCTAGATCCATTAATGAGCG 57.182 34.615 17.23 0.45 0.00 5.03
2469 4625 2.229062 TGAGCGAGAGACTTCGTCAATT 59.771 45.455 8.24 0.00 42.38 2.32
2516 4691 6.750963 GCTCTTGATTTCAAATCTTCACATCC 59.249 38.462 11.46 0.00 35.15 3.51
2517 4692 7.362747 GCTCTTGATTTCAAATCTTCACATCCT 60.363 37.037 11.46 0.00 35.15 3.24
2531 4706 8.777865 TCTTCACATCCTACTTTAATTGACAG 57.222 34.615 0.00 0.00 0.00 3.51
2541 4716 8.821894 CCTACTTTAATTGACAGCTAGATTCAC 58.178 37.037 0.00 0.00 0.00 3.18
2552 4727 5.717178 ACAGCTAGATTCACTGACTCCTAAA 59.283 40.000 0.00 0.00 35.38 1.85
2556 4731 6.311690 GCTAGATTCACTGACTCCTAAACAAC 59.688 42.308 0.00 0.00 0.00 3.32
2560 4735 3.005472 TCACTGACTCCTAAACAACCTCG 59.995 47.826 0.00 0.00 0.00 4.63
2577 4752 6.072342 ACAACCTCGTCAAAACTTTGTTAAGT 60.072 34.615 2.30 0.00 46.44 2.24
2591 4766 5.367945 TTGTTAAGTTCAGGGAGTTGACT 57.632 39.130 0.00 0.00 0.00 3.41
2592 4767 5.367945 TGTTAAGTTCAGGGAGTTGACTT 57.632 39.130 0.00 0.00 0.00 3.01
2594 4769 6.184789 TGTTAAGTTCAGGGAGTTGACTTTT 58.815 36.000 0.00 0.00 0.00 2.27
2616 4791 6.658188 TTTTTAACTAGTTTGTCCCCATGG 57.342 37.500 14.49 4.14 0.00 3.66
2618 4793 0.331616 ACTAGTTTGTCCCCATGGGC 59.668 55.000 26.87 13.58 43.94 5.36
2619 4794 0.395724 CTAGTTTGTCCCCATGGGCC 60.396 60.000 26.87 17.89 43.94 5.80
2620 4795 1.143329 TAGTTTGTCCCCATGGGCCA 61.143 55.000 26.87 20.37 43.94 5.36
2623 4798 3.537961 TTGTCCCCATGGGCCAACC 62.538 63.158 26.87 10.53 43.94 3.77
2649 4824 9.570468 CAGGAGGTGAGTTAATAGTATACAGTA 57.430 37.037 5.50 0.00 0.00 2.74
2658 4833 5.961396 AATAGTATACAGTAGACGGCCTG 57.039 43.478 5.50 0.00 34.82 4.85
2675 4850 4.202040 CGGCCTGAAAAGATTAATGCATGA 60.202 41.667 0.00 0.00 0.00 3.07
2684 4859 9.745880 GAAAAGATTAATGCATGAATGATGACT 57.254 29.630 14.36 1.77 33.31 3.41
2691 4866 4.581868 TGCATGAATGATGACTGACTTGA 58.418 39.130 0.00 0.00 33.31 3.02
2708 4883 3.521531 ACTTGAGGGGATCTCTTCCTTTC 59.478 47.826 1.68 0.00 44.75 2.62
2786 4961 4.440387 GGAGTTCAGAATCCTCGGACTTAC 60.440 50.000 0.00 0.00 32.51 2.34
2795 4970 6.436532 AGAATCCTCGGACTTACAGTTTCTTA 59.563 38.462 0.00 0.00 0.00 2.10
2798 4973 5.771666 TCCTCGGACTTACAGTTTCTTAGAA 59.228 40.000 0.00 0.00 0.00 2.10
2828 5003 5.622770 ATGCGTTCCAAAGGTAAAGTTAG 57.377 39.130 0.00 0.00 0.00 2.34
2834 5009 6.146673 CGTTCCAAAGGTAAAGTTAGTGTAGG 59.853 42.308 0.00 0.00 0.00 3.18
2880 5055 8.578448 TTTTCAAATACATGATGATGAGTGGA 57.422 30.769 0.00 0.00 33.36 4.02
2881 5056 8.578448 TTTCAAATACATGATGATGAGTGGAA 57.422 30.769 0.00 0.00 33.36 3.53
2882 5057 7.797038 TCAAATACATGATGATGAGTGGAAG 57.203 36.000 0.00 0.00 33.36 3.46
2883 5058 6.261603 TCAAATACATGATGATGAGTGGAAGC 59.738 38.462 0.00 0.00 33.36 3.86
2884 5059 3.928005 ACATGATGATGAGTGGAAGCT 57.072 42.857 0.00 0.00 33.36 3.74
2885 5060 3.806380 ACATGATGATGAGTGGAAGCTC 58.194 45.455 0.00 0.00 36.12 4.09
2886 5061 2.996249 TGATGATGAGTGGAAGCTCC 57.004 50.000 0.00 0.00 36.96 4.70
2887 5062 2.190538 TGATGATGAGTGGAAGCTCCA 58.809 47.619 1.25 1.25 45.98 3.86
2888 5063 7.162226 ACATGATGATGAGTGGAAGCTCCAT 62.162 44.000 0.00 0.00 39.89 3.41
2889 5064 7.881442 ACATGATGATGAGTGGAAGCTCCATA 61.881 42.308 0.00 0.53 39.89 2.74
2890 5065 9.272581 ACATGATGATGAGTGGAAGCTCCATAA 62.273 40.741 0.00 0.00 39.89 1.90
2899 5074 5.199982 TGGAAGCTCCATAAAATTACCCA 57.800 39.130 1.25 0.00 42.67 4.51
2900 5075 5.776358 TGGAAGCTCCATAAAATTACCCAT 58.224 37.500 1.25 0.00 42.67 4.00
2901 5076 6.201591 TGGAAGCTCCATAAAATTACCCATT 58.798 36.000 1.25 0.00 42.67 3.16
2902 5077 6.323739 TGGAAGCTCCATAAAATTACCCATTC 59.676 38.462 1.25 0.00 42.67 2.67
2903 5078 6.391227 AAGCTCCATAAAATTACCCATTCG 57.609 37.500 0.00 0.00 0.00 3.34
2904 5079 4.827284 AGCTCCATAAAATTACCCATTCGG 59.173 41.667 0.00 0.00 37.81 4.30
2905 5080 4.825085 GCTCCATAAAATTACCCATTCGGA 59.175 41.667 0.00 0.00 34.64 4.55
2906 5081 5.476945 GCTCCATAAAATTACCCATTCGGAT 59.523 40.000 0.00 0.00 34.64 4.18
2907 5082 6.015434 GCTCCATAAAATTACCCATTCGGATT 60.015 38.462 0.00 0.00 34.64 3.01
2908 5083 7.519032 TCCATAAAATTACCCATTCGGATTC 57.481 36.000 0.00 0.00 34.64 2.52
2909 5084 7.294584 TCCATAAAATTACCCATTCGGATTCT 58.705 34.615 0.00 0.00 34.64 2.40
2910 5085 7.782644 TCCATAAAATTACCCATTCGGATTCTT 59.217 33.333 0.00 0.00 34.64 2.52
2911 5086 8.082242 CCATAAAATTACCCATTCGGATTCTTC 58.918 37.037 0.00 0.00 34.64 2.87
2912 5087 6.465439 AAAATTACCCATTCGGATTCTTCC 57.535 37.500 0.00 0.00 38.81 3.46
2913 5088 5.388599 AATTACCCATTCGGATTCTTCCT 57.611 39.130 0.00 0.00 40.17 3.36
2914 5089 4.855298 TTACCCATTCGGATTCTTCCTT 57.145 40.909 0.00 0.00 40.17 3.36
2915 5090 3.283259 ACCCATTCGGATTCTTCCTTC 57.717 47.619 0.00 0.00 40.17 3.46
2916 5091 2.846827 ACCCATTCGGATTCTTCCTTCT 59.153 45.455 0.00 0.00 40.17 2.85
2917 5092 4.037927 ACCCATTCGGATTCTTCCTTCTA 58.962 43.478 0.00 0.00 40.17 2.10
2918 5093 4.141688 ACCCATTCGGATTCTTCCTTCTAC 60.142 45.833 0.00 0.00 40.17 2.59
2919 5094 4.051922 CCATTCGGATTCTTCCTTCTACG 58.948 47.826 0.00 0.00 40.17 3.51
2920 5095 4.441634 CCATTCGGATTCTTCCTTCTACGT 60.442 45.833 0.00 0.00 40.17 3.57
2921 5096 4.796038 TTCGGATTCTTCCTTCTACGTT 57.204 40.909 0.00 0.00 40.17 3.99
2922 5097 5.902613 TTCGGATTCTTCCTTCTACGTTA 57.097 39.130 0.00 0.00 40.17 3.18
2923 5098 5.240713 TCGGATTCTTCCTTCTACGTTAC 57.759 43.478 0.00 0.00 40.17 2.50
2924 5099 4.946157 TCGGATTCTTCCTTCTACGTTACT 59.054 41.667 0.00 0.00 40.17 2.24
2925 5100 5.065731 TCGGATTCTTCCTTCTACGTTACTC 59.934 44.000 0.00 0.00 40.17 2.59
2926 5101 5.066246 CGGATTCTTCCTTCTACGTTACTCT 59.934 44.000 0.00 0.00 40.17 3.24
2927 5102 6.259608 CGGATTCTTCCTTCTACGTTACTCTA 59.740 42.308 0.00 0.00 40.17 2.43
2928 5103 7.201679 CGGATTCTTCCTTCTACGTTACTCTAA 60.202 40.741 0.00 0.00 40.17 2.10
2929 5104 7.914871 GGATTCTTCCTTCTACGTTACTCTAAC 59.085 40.741 0.00 0.00 39.14 2.34
2930 5105 6.749923 TCTTCCTTCTACGTTACTCTAACC 57.250 41.667 0.00 0.00 35.27 2.85
2931 5106 6.240894 TCTTCCTTCTACGTTACTCTAACCA 58.759 40.000 0.00 0.00 35.27 3.67
2932 5107 6.716628 TCTTCCTTCTACGTTACTCTAACCAA 59.283 38.462 0.00 0.00 35.27 3.67
2933 5108 6.899393 TCCTTCTACGTTACTCTAACCAAA 57.101 37.500 0.00 0.00 35.27 3.28
2934 5109 7.288810 TCCTTCTACGTTACTCTAACCAAAA 57.711 36.000 0.00 0.00 35.27 2.44
2935 5110 7.899973 TCCTTCTACGTTACTCTAACCAAAAT 58.100 34.615 0.00 0.00 35.27 1.82
2936 5111 9.023962 TCCTTCTACGTTACTCTAACCAAAATA 57.976 33.333 0.00 0.00 35.27 1.40
2937 5112 9.813446 CCTTCTACGTTACTCTAACCAAAATAT 57.187 33.333 0.00 0.00 35.27 1.28
2943 5118 9.715121 ACGTTACTCTAACCAAAATATCTTCAA 57.285 29.630 0.00 0.00 35.27 2.69
2962 5137 9.753674 ATCTTCAAGTATTTCTTTGGATTACCA 57.246 29.630 0.00 0.00 45.34 3.25
2963 5138 9.010029 TCTTCAAGTATTTCTTTGGATTACCAC 57.990 33.333 0.00 0.00 46.80 4.16
2964 5139 8.698973 TTCAAGTATTTCTTTGGATTACCACA 57.301 30.769 0.00 0.00 46.80 4.17
2965 5140 8.698973 TCAAGTATTTCTTTGGATTACCACAA 57.301 30.769 0.00 0.00 46.80 3.33
2966 5141 9.308000 TCAAGTATTTCTTTGGATTACCACAAT 57.692 29.630 0.00 0.00 46.80 2.71
2967 5142 9.927668 CAAGTATTTCTTTGGATTACCACAATT 57.072 29.630 0.00 0.00 46.80 2.32
2970 5145 9.797556 GTATTTCTTTGGATTACCACAATTACC 57.202 33.333 0.00 0.00 46.80 2.85
2971 5146 8.664669 ATTTCTTTGGATTACCACAATTACCT 57.335 30.769 0.00 0.00 46.80 3.08
2972 5147 7.696992 TTCTTTGGATTACCACAATTACCTC 57.303 36.000 0.00 0.00 46.80 3.85
2973 5148 6.785076 TCTTTGGATTACCACAATTACCTCA 58.215 36.000 0.00 0.00 46.80 3.86
2974 5149 6.657541 TCTTTGGATTACCACAATTACCTCAC 59.342 38.462 0.00 0.00 46.80 3.51
2975 5150 5.772393 TGGATTACCACAATTACCTCACT 57.228 39.130 0.00 0.00 41.77 3.41
2976 5151 5.496556 TGGATTACCACAATTACCTCACTG 58.503 41.667 0.00 0.00 41.77 3.66
2977 5152 5.249622 TGGATTACCACAATTACCTCACTGA 59.750 40.000 0.00 0.00 41.77 3.41
2978 5153 6.069673 TGGATTACCACAATTACCTCACTGAT 60.070 38.462 0.00 0.00 41.77 2.90
2979 5154 7.126573 TGGATTACCACAATTACCTCACTGATA 59.873 37.037 0.00 0.00 41.77 2.15
2980 5155 8.157476 GGATTACCACAATTACCTCACTGATAT 58.843 37.037 0.00 0.00 35.97 1.63
2981 5156 9.561069 GATTACCACAATTACCTCACTGATATT 57.439 33.333 0.00 0.00 0.00 1.28
2982 5157 9.920946 ATTACCACAATTACCTCACTGATATTT 57.079 29.630 0.00 0.00 0.00 1.40
2983 5158 9.747898 TTACCACAATTACCTCACTGATATTTT 57.252 29.630 0.00 0.00 0.00 1.82
2985 5160 9.920946 ACCACAATTACCTCACTGATATTTTAT 57.079 29.630 0.00 0.00 0.00 1.40
2994 5169 9.829507 ACCTCACTGATATTTTATCTCAAGAAG 57.170 33.333 0.00 0.00 0.00 2.85
3004 5179 8.792830 ATTTTATCTCAAGAAGATCGAAACCA 57.207 30.769 0.00 0.00 43.90 3.67
3005 5180 7.834068 TTTATCTCAAGAAGATCGAAACCAG 57.166 36.000 0.00 0.00 43.90 4.00
3006 5181 4.873746 TCTCAAGAAGATCGAAACCAGT 57.126 40.909 0.00 0.00 0.00 4.00
3007 5182 5.977489 TCTCAAGAAGATCGAAACCAGTA 57.023 39.130 0.00 0.00 0.00 2.74
3008 5183 5.710984 TCTCAAGAAGATCGAAACCAGTAC 58.289 41.667 0.00 0.00 0.00 2.73
3009 5184 5.243060 TCTCAAGAAGATCGAAACCAGTACA 59.757 40.000 0.00 0.00 0.00 2.90
3010 5185 6.037786 TCAAGAAGATCGAAACCAGTACAT 57.962 37.500 0.00 0.00 0.00 2.29
3011 5186 5.869344 TCAAGAAGATCGAAACCAGTACATG 59.131 40.000 0.00 0.00 0.00 3.21
3029 5204 7.118422 GTACATGGACACTGTACTTTTCTTC 57.882 40.000 2.19 0.00 43.55 2.87
3030 5205 5.063880 ACATGGACACTGTACTTTTCTTCC 58.936 41.667 0.00 0.00 0.00 3.46
3031 5206 4.764050 TGGACACTGTACTTTTCTTCCA 57.236 40.909 0.00 0.00 0.00 3.53
3032 5207 5.304686 TGGACACTGTACTTTTCTTCCAT 57.695 39.130 0.00 0.00 0.00 3.41
3033 5208 6.428083 TGGACACTGTACTTTTCTTCCATA 57.572 37.500 0.00 0.00 0.00 2.74
3034 5209 7.016153 TGGACACTGTACTTTTCTTCCATAT 57.984 36.000 0.00 0.00 0.00 1.78
3035 5210 8.141298 TGGACACTGTACTTTTCTTCCATATA 57.859 34.615 0.00 0.00 0.00 0.86
3036 5211 8.038944 TGGACACTGTACTTTTCTTCCATATAC 58.961 37.037 0.00 0.00 0.00 1.47
3037 5212 8.258708 GGACACTGTACTTTTCTTCCATATACT 58.741 37.037 0.00 0.00 0.00 2.12
3038 5213 9.303537 GACACTGTACTTTTCTTCCATATACTC 57.696 37.037 0.00 0.00 0.00 2.59
3039 5214 9.036980 ACACTGTACTTTTCTTCCATATACTCT 57.963 33.333 0.00 0.00 0.00 3.24
3040 5215 9.522804 CACTGTACTTTTCTTCCATATACTCTC 57.477 37.037 0.00 0.00 0.00 3.20
3041 5216 9.482175 ACTGTACTTTTCTTCCATATACTCTCT 57.518 33.333 0.00 0.00 0.00 3.10
3044 5219 9.902196 GTACTTTTCTTCCATATACTCTCTAGC 57.098 37.037 0.00 0.00 0.00 3.42
3045 5220 7.958088 ACTTTTCTTCCATATACTCTCTAGCC 58.042 38.462 0.00 0.00 0.00 3.93
3046 5221 7.565398 ACTTTTCTTCCATATACTCTCTAGCCA 59.435 37.037 0.00 0.00 0.00 4.75
3047 5222 8.497910 TTTTCTTCCATATACTCTCTAGCCAT 57.502 34.615 0.00 0.00 0.00 4.40
3048 5223 7.710676 TTCTTCCATATACTCTCTAGCCATC 57.289 40.000 0.00 0.00 0.00 3.51
3049 5224 5.883115 TCTTCCATATACTCTCTAGCCATCG 59.117 44.000 0.00 0.00 0.00 3.84
3050 5225 5.437191 TCCATATACTCTCTAGCCATCGA 57.563 43.478 0.00 0.00 0.00 3.59
3051 5226 6.007485 TCCATATACTCTCTAGCCATCGAT 57.993 41.667 0.00 0.00 0.00 3.59
3052 5227 5.825151 TCCATATACTCTCTAGCCATCGATG 59.175 44.000 18.76 18.76 0.00 3.84
3053 5228 5.825151 CCATATACTCTCTAGCCATCGATGA 59.175 44.000 26.86 6.03 0.00 2.92
3054 5229 6.319911 CCATATACTCTCTAGCCATCGATGAA 59.680 42.308 26.86 10.52 0.00 2.57
3055 5230 7.148000 CCATATACTCTCTAGCCATCGATGAAA 60.148 40.741 26.86 10.17 0.00 2.69
3056 5231 6.656632 ATACTCTCTAGCCATCGATGAAAA 57.343 37.500 26.86 9.82 0.00 2.29
3057 5232 5.543507 ACTCTCTAGCCATCGATGAAAAT 57.456 39.130 26.86 11.24 0.00 1.82
3058 5233 6.656632 ACTCTCTAGCCATCGATGAAAATA 57.343 37.500 26.86 11.75 0.00 1.40
3059 5234 7.055667 ACTCTCTAGCCATCGATGAAAATAA 57.944 36.000 26.86 6.58 0.00 1.40
3060 5235 7.151308 ACTCTCTAGCCATCGATGAAAATAAG 58.849 38.462 26.86 15.98 0.00 1.73
3061 5236 7.055667 TCTCTAGCCATCGATGAAAATAAGT 57.944 36.000 26.86 4.34 0.00 2.24
3062 5237 7.500992 TCTCTAGCCATCGATGAAAATAAGTT 58.499 34.615 26.86 8.40 0.00 2.66
3063 5238 7.987458 TCTCTAGCCATCGATGAAAATAAGTTT 59.013 33.333 26.86 3.99 0.00 2.66
3064 5239 7.919690 TCTAGCCATCGATGAAAATAAGTTTG 58.080 34.615 26.86 6.27 0.00 2.93
3065 5240 6.757897 AGCCATCGATGAAAATAAGTTTGA 57.242 33.333 26.86 0.00 0.00 2.69
3066 5241 7.156876 AGCCATCGATGAAAATAAGTTTGAA 57.843 32.000 26.86 0.00 0.00 2.69
3067 5242 7.253422 AGCCATCGATGAAAATAAGTTTGAAG 58.747 34.615 26.86 4.98 0.00 3.02
3068 5243 6.473455 GCCATCGATGAAAATAAGTTTGAAGG 59.527 38.462 26.86 4.58 0.00 3.46
3069 5244 7.538575 CCATCGATGAAAATAAGTTTGAAGGT 58.461 34.615 26.86 0.00 0.00 3.50
3070 5245 7.698130 CCATCGATGAAAATAAGTTTGAAGGTC 59.302 37.037 26.86 0.00 0.00 3.85
3071 5246 7.737972 TCGATGAAAATAAGTTTGAAGGTCA 57.262 32.000 0.00 0.00 0.00 4.02
3072 5247 7.806690 TCGATGAAAATAAGTTTGAAGGTCAG 58.193 34.615 0.00 0.00 0.00 3.51
3073 5248 6.524586 CGATGAAAATAAGTTTGAAGGTCAGC 59.475 38.462 0.00 0.00 0.00 4.26
3074 5249 6.707440 TGAAAATAAGTTTGAAGGTCAGCA 57.293 33.333 0.00 0.00 0.00 4.41
3075 5250 7.106439 TGAAAATAAGTTTGAAGGTCAGCAA 57.894 32.000 0.00 0.00 0.00 3.91
3076 5251 6.978080 TGAAAATAAGTTTGAAGGTCAGCAAC 59.022 34.615 0.00 0.00 0.00 4.17
3077 5252 6.715347 AAATAAGTTTGAAGGTCAGCAACT 57.285 33.333 0.00 0.00 30.99 3.16
3078 5253 7.817418 AAATAAGTTTGAAGGTCAGCAACTA 57.183 32.000 0.00 0.00 29.06 2.24
3079 5254 8.409358 AAATAAGTTTGAAGGTCAGCAACTAT 57.591 30.769 0.00 0.00 29.06 2.12
3080 5255 5.948992 AAGTTTGAAGGTCAGCAACTATC 57.051 39.130 0.00 0.00 29.06 2.08
3081 5256 3.997021 AGTTTGAAGGTCAGCAACTATCG 59.003 43.478 0.00 0.00 28.72 2.92
3082 5257 3.953712 TTGAAGGTCAGCAACTATCGA 57.046 42.857 0.00 0.00 0.00 3.59
3083 5258 3.510388 TGAAGGTCAGCAACTATCGAG 57.490 47.619 0.00 0.00 0.00 4.04
3084 5259 2.826128 TGAAGGTCAGCAACTATCGAGT 59.174 45.455 0.00 0.00 37.59 4.18
3085 5260 4.014406 TGAAGGTCAGCAACTATCGAGTA 58.986 43.478 0.00 0.00 33.58 2.59
3086 5261 4.461431 TGAAGGTCAGCAACTATCGAGTAA 59.539 41.667 0.00 0.00 33.58 2.24
3087 5262 4.640789 AGGTCAGCAACTATCGAGTAAG 57.359 45.455 0.00 0.00 33.58 2.34
3088 5263 4.017808 AGGTCAGCAACTATCGAGTAAGT 58.982 43.478 0.00 0.00 33.58 2.24
3089 5264 5.191426 AGGTCAGCAACTATCGAGTAAGTA 58.809 41.667 0.00 0.00 33.58 2.24
3090 5265 5.828859 AGGTCAGCAACTATCGAGTAAGTAT 59.171 40.000 0.00 0.00 33.58 2.12
3091 5266 5.915758 GGTCAGCAACTATCGAGTAAGTATG 59.084 44.000 0.00 0.00 33.58 2.39
3092 5267 5.399892 GTCAGCAACTATCGAGTAAGTATGC 59.600 44.000 16.03 16.03 33.58 3.14
3093 5268 4.681942 CAGCAACTATCGAGTAAGTATGCC 59.318 45.833 18.02 9.02 33.58 4.40
3094 5269 4.341235 AGCAACTATCGAGTAAGTATGCCA 59.659 41.667 18.02 0.00 33.58 4.92
3095 5270 4.444720 GCAACTATCGAGTAAGTATGCCAC 59.555 45.833 14.45 0.00 33.58 5.01
3096 5271 4.850347 ACTATCGAGTAAGTATGCCACC 57.150 45.455 0.00 0.00 32.65 4.61
3097 5272 4.212716 ACTATCGAGTAAGTATGCCACCA 58.787 43.478 0.00 0.00 32.65 4.17
3098 5273 3.735237 ATCGAGTAAGTATGCCACCAG 57.265 47.619 0.00 0.00 0.00 4.00
3099 5274 1.136305 TCGAGTAAGTATGCCACCAGC 59.864 52.381 0.00 0.00 44.14 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.135139 AGTGTATCAACGCATCGAGCT 59.865 47.619 0.00 0.00 42.61 4.09
27 28 8.561212 ACAAGTTAAATAAAGTGTATCAACGCA 58.439 29.630 0.00 0.00 38.65 5.24
144 145 3.284617 GCACCCGACTTATAAACCCAAT 58.715 45.455 0.00 0.00 0.00 3.16
163 164 5.105797 CCAATTATGCTCCTAAACACTTGCA 60.106 40.000 0.00 0.00 34.88 4.08
164 165 5.105756 ACCAATTATGCTCCTAAACACTTGC 60.106 40.000 0.00 0.00 0.00 4.01
229 230 6.099341 CCAACCAATTACTAGCCAACATTTC 58.901 40.000 0.00 0.00 0.00 2.17
289 290 9.190858 GCACAATTAACAGTTGTCATAATTTGA 57.809 29.630 0.00 0.00 37.69 2.69
346 347 1.271934 TGGTTTCATGCCAACATTCGG 59.728 47.619 9.14 0.00 32.87 4.30
347 348 2.721274 TGGTTTCATGCCAACATTCG 57.279 45.000 9.14 0.00 32.87 3.34
354 355 6.491062 CCTAGATCATAATTGGTTTCATGCCA 59.509 38.462 0.00 0.00 0.00 4.92
355 356 6.571150 GCCTAGATCATAATTGGTTTCATGCC 60.571 42.308 0.00 0.00 0.00 4.40
356 357 6.385033 GCCTAGATCATAATTGGTTTCATGC 58.615 40.000 0.00 0.00 0.00 4.06
357 358 6.718454 AGGCCTAGATCATAATTGGTTTCATG 59.282 38.462 1.29 0.00 0.00 3.07
358 359 6.856757 AGGCCTAGATCATAATTGGTTTCAT 58.143 36.000 1.29 0.00 0.00 2.57
359 360 6.266131 AGGCCTAGATCATAATTGGTTTCA 57.734 37.500 1.29 0.00 0.00 2.69
360 361 5.707764 GGAGGCCTAGATCATAATTGGTTTC 59.292 44.000 4.42 0.00 0.00 2.78
373 374 2.683768 AGTCAAATCGGAGGCCTAGAT 58.316 47.619 4.42 11.69 0.00 1.98
397 398 8.786898 ACTTGTGTGGCATATCATACATATTTC 58.213 33.333 0.00 0.00 38.28 2.17
641 670 5.004361 TGGGGATTTCACAAATTGTAGGA 57.996 39.130 0.00 0.00 0.00 2.94
708 812 7.323420 TCACACATCCACAAGAATTACTAGAG 58.677 38.462 0.00 0.00 0.00 2.43
709 813 7.239763 TCACACATCCACAAGAATTACTAGA 57.760 36.000 0.00 0.00 0.00 2.43
720 824 2.912771 AGTCGTTTCACACATCCACAA 58.087 42.857 0.00 0.00 0.00 3.33
722 826 2.096909 CGAAGTCGTTTCACACATCCAC 60.097 50.000 0.00 0.00 35.43 4.02
727 831 0.927537 CTGCGAAGTCGTTTCACACA 59.072 50.000 2.25 0.00 42.22 3.72
736 840 1.625616 AACGATAACCTGCGAAGTCG 58.374 50.000 0.00 0.00 43.27 4.18
738 842 5.007385 AGATTAACGATAACCTGCGAAGT 57.993 39.130 0.00 0.00 0.00 3.01
744 848 9.130312 GTAAGATGCTAGATTAACGATAACCTG 57.870 37.037 0.00 0.00 0.00 4.00
745 849 8.857098 TGTAAGATGCTAGATTAACGATAACCT 58.143 33.333 0.00 0.00 0.00 3.50
766 870 6.971602 TGCTAGATTAACGGAGATCTGTAAG 58.028 40.000 0.00 0.00 34.60 2.34
777 881 8.594881 AGATCTGTAAAATGCTAGATTAACGG 57.405 34.615 0.00 0.00 30.49 4.44
783 887 7.158021 GCTGGTAGATCTGTAAAATGCTAGAT 58.842 38.462 5.18 0.00 32.87 1.98
784 888 6.516718 GCTGGTAGATCTGTAAAATGCTAGA 58.483 40.000 5.18 0.00 0.00 2.43
786 890 5.289595 CGCTGGTAGATCTGTAAAATGCTA 58.710 41.667 5.18 0.00 0.00 3.49
787 891 4.122776 CGCTGGTAGATCTGTAAAATGCT 58.877 43.478 5.18 0.00 0.00 3.79
788 892 3.248602 CCGCTGGTAGATCTGTAAAATGC 59.751 47.826 5.18 0.10 0.00 3.56
789 893 4.693283 TCCGCTGGTAGATCTGTAAAATG 58.307 43.478 5.18 0.00 0.00 2.32
791 895 4.222145 ACTTCCGCTGGTAGATCTGTAAAA 59.778 41.667 5.18 0.00 0.00 1.52
792 896 3.767673 ACTTCCGCTGGTAGATCTGTAAA 59.232 43.478 5.18 0.00 0.00 2.01
793 897 3.362706 ACTTCCGCTGGTAGATCTGTAA 58.637 45.455 5.18 0.00 0.00 2.41
794 898 3.014304 ACTTCCGCTGGTAGATCTGTA 57.986 47.619 5.18 0.00 0.00 2.74
796 900 2.952978 AGTACTTCCGCTGGTAGATCTG 59.047 50.000 5.18 0.00 0.00 2.90
797 901 2.952978 CAGTACTTCCGCTGGTAGATCT 59.047 50.000 0.00 0.00 0.00 2.75
798 902 2.034812 CCAGTACTTCCGCTGGTAGATC 59.965 54.545 0.00 0.00 45.28 2.75
904 1021 8.713971 TGACCAATCCATCTTAATTAAGAGCTA 58.286 33.333 27.18 17.19 44.67 3.32
992 1255 7.683578 TGATAGAGCAATTTATAGCCATCAGT 58.316 34.615 0.00 0.00 0.00 3.41
1085 1649 1.098129 GCAAGGGGCAGCTTAGCTAC 61.098 60.000 6.35 0.00 43.97 3.58
1086 1650 1.224592 GCAAGGGGCAGCTTAGCTA 59.775 57.895 6.35 0.00 43.97 3.32
1087 1651 2.044551 GCAAGGGGCAGCTTAGCT 60.045 61.111 0.00 0.00 43.97 3.32
1326 1902 3.016736 CCCCGAGCACTTTGATTTGTAT 58.983 45.455 0.00 0.00 0.00 2.29
1846 2466 6.722590 TCCATATTGAAGCAAGAATGGCATAT 59.277 34.615 0.00 0.00 37.68 1.78
1847 2467 6.069994 TCCATATTGAAGCAAGAATGGCATA 58.930 36.000 0.00 2.12 37.68 3.14
1909 2567 7.831691 TGGAAAAAGATTATCTCCACAAACA 57.168 32.000 0.00 0.00 31.19 2.83
1922 2580 9.178758 GACATATCAAGTAGGTGGAAAAAGATT 57.821 33.333 0.00 0.00 0.00 2.40
1997 2655 2.358247 TTCTTGTCGCGGCCTTCC 60.358 61.111 8.89 0.00 0.00 3.46
2034 2692 0.464373 ACATATGCGACCTGCCTTGG 60.464 55.000 1.58 0.00 45.60 3.61
2123 4277 4.641989 TCTGCTTTTCTGTTTTCTGCTTCT 59.358 37.500 0.00 0.00 0.00 2.85
2124 4278 4.925068 TCTGCTTTTCTGTTTTCTGCTTC 58.075 39.130 0.00 0.00 0.00 3.86
2127 4281 4.266265 GTGTTCTGCTTTTCTGTTTTCTGC 59.734 41.667 0.00 0.00 0.00 4.26
2128 4282 4.496895 CGTGTTCTGCTTTTCTGTTTTCTG 59.503 41.667 0.00 0.00 0.00 3.02
2129 4283 4.156008 ACGTGTTCTGCTTTTCTGTTTTCT 59.844 37.500 0.00 0.00 0.00 2.52
2130 4284 4.262976 CACGTGTTCTGCTTTTCTGTTTTC 59.737 41.667 7.58 0.00 0.00 2.29
2131 4285 4.165779 CACGTGTTCTGCTTTTCTGTTTT 58.834 39.130 7.58 0.00 0.00 2.43
2160 4314 2.681848 CAATTTTGCAAGTGCCACCAAA 59.318 40.909 0.00 0.00 41.18 3.28
2193 4347 5.659440 TTTCTGGTTTCTGTCTGCTTTTT 57.341 34.783 0.00 0.00 0.00 1.94
2205 4359 7.222805 GTGTCATTTTCCTTCTTTTCTGGTTTC 59.777 37.037 0.00 0.00 0.00 2.78
2210 4364 6.199719 GCAAGTGTCATTTTCCTTCTTTTCTG 59.800 38.462 0.00 0.00 0.00 3.02
2228 4382 5.581126 TTCTCTCACAATTTTGCAAGTGT 57.419 34.783 14.14 10.49 41.91 3.55
2229 4383 6.020121 CAGTTTCTCTCACAATTTTGCAAGTG 60.020 38.462 9.62 9.62 34.02 3.16
2238 4392 6.039829 GGGTCTTTTCAGTTTCTCTCACAATT 59.960 38.462 0.00 0.00 0.00 2.32
2278 4434 0.394488 CTCAGAGTCCCACGCCTAGA 60.394 60.000 0.00 0.00 0.00 2.43
2294 4450 4.009675 GTCATACATGTTGCTTTCCCTCA 58.990 43.478 2.30 0.00 0.00 3.86
2300 4456 3.073678 TGCGAGTCATACATGTTGCTTT 58.926 40.909 2.30 0.00 0.00 3.51
2328 4484 5.907197 TGCTAACGCAAAAGCTATATCTC 57.093 39.130 0.00 0.00 44.62 2.75
2378 4534 1.870993 CGTTATACTTACAGCCCGGCC 60.871 57.143 5.55 0.00 0.00 6.13
2395 4551 9.390795 CGATTTACTAATAGCTACACATACGTT 57.609 33.333 0.00 0.00 0.00 3.99
2398 4554 8.302438 ACCCGATTTACTAATAGCTACACATAC 58.698 37.037 0.00 0.00 0.00 2.39
2407 4563 9.269453 ACTAAAATGACCCGATTTACTAATAGC 57.731 33.333 0.00 0.00 0.00 2.97
2516 4691 9.593134 AGTGAATCTAGCTGTCAATTAAAGTAG 57.407 33.333 0.00 0.00 0.00 2.57
2517 4692 9.371136 CAGTGAATCTAGCTGTCAATTAAAGTA 57.629 33.333 0.00 0.00 0.00 2.24
2524 4699 5.395103 GGAGTCAGTGAATCTAGCTGTCAAT 60.395 44.000 19.16 0.00 0.00 2.57
2525 4700 4.081972 GGAGTCAGTGAATCTAGCTGTCAA 60.082 45.833 19.16 0.00 0.00 3.18
2526 4701 3.445450 GGAGTCAGTGAATCTAGCTGTCA 59.555 47.826 19.16 0.00 0.00 3.58
2527 4702 3.699038 AGGAGTCAGTGAATCTAGCTGTC 59.301 47.826 19.16 2.03 0.00 3.51
2528 4703 3.707316 AGGAGTCAGTGAATCTAGCTGT 58.293 45.455 19.16 0.00 0.00 4.40
2531 4706 5.967088 TGTTTAGGAGTCAGTGAATCTAGC 58.033 41.667 19.16 8.60 0.00 3.42
2541 4716 3.005472 TGACGAGGTTGTTTAGGAGTCAG 59.995 47.826 0.00 0.00 34.01 3.51
2552 4727 4.776795 AACAAAGTTTTGACGAGGTTGT 57.223 36.364 11.29 0.00 40.55 3.32
2556 4731 6.548171 TGAACTTAACAAAGTTTTGACGAGG 58.452 36.000 11.29 0.30 42.57 4.63
2560 4735 6.859017 TCCCTGAACTTAACAAAGTTTTGAC 58.141 36.000 11.29 0.00 42.57 3.18
2609 4784 4.783501 CCTGGTTGGCCCATGGGG 62.784 72.222 32.23 13.26 44.15 4.96
2613 4788 2.535317 ACCTCCTGGTTGGCCCAT 60.535 61.111 0.00 0.00 46.05 4.00
2614 4789 3.579302 CACCTCCTGGTTGGCCCA 61.579 66.667 0.00 0.00 46.05 5.36
2615 4790 3.256960 TCACCTCCTGGTTGGCCC 61.257 66.667 0.00 0.00 46.05 5.80
2616 4791 2.069165 AACTCACCTCCTGGTTGGCC 62.069 60.000 0.00 0.00 46.05 5.36
2618 4793 3.721087 ATTAACTCACCTCCTGGTTGG 57.279 47.619 6.89 6.89 46.05 3.77
2619 4794 5.422214 ACTATTAACTCACCTCCTGGTTG 57.578 43.478 0.00 0.00 46.05 3.77
2620 4795 7.842743 TGTATACTATTAACTCACCTCCTGGTT 59.157 37.037 4.17 0.00 46.05 3.67
2623 4798 8.466617 ACTGTATACTATTAACTCACCTCCTG 57.533 38.462 4.17 0.00 0.00 3.86
2624 4799 9.796180 CTACTGTATACTATTAACTCACCTCCT 57.204 37.037 4.17 0.00 0.00 3.69
2625 4800 9.790344 TCTACTGTATACTATTAACTCACCTCC 57.210 37.037 4.17 0.00 0.00 4.30
2627 4802 9.270640 CGTCTACTGTATACTATTAACTCACCT 57.729 37.037 4.17 0.00 0.00 4.00
2629 4804 8.014517 GCCGTCTACTGTATACTATTAACTCAC 58.985 40.741 4.17 0.00 0.00 3.51
2630 4805 7.173907 GGCCGTCTACTGTATACTATTAACTCA 59.826 40.741 4.17 0.00 0.00 3.41
2631 4806 7.390162 AGGCCGTCTACTGTATACTATTAACTC 59.610 40.741 4.17 0.00 0.00 3.01
2632 4807 7.174599 CAGGCCGTCTACTGTATACTATTAACT 59.825 40.741 4.17 0.00 0.00 2.24
2633 4808 7.173907 TCAGGCCGTCTACTGTATACTATTAAC 59.826 40.741 4.17 0.00 36.17 2.01
2634 4809 7.226441 TCAGGCCGTCTACTGTATACTATTAA 58.774 38.462 4.17 0.00 36.17 1.40
2649 4824 3.378427 GCATTAATCTTTTCAGGCCGTCT 59.622 43.478 0.00 0.00 0.00 4.18
2658 4833 9.745880 AGTCATCATTCATGCATTAATCTTTTC 57.254 29.630 3.06 0.00 31.70 2.29
2675 4850 3.184628 TCCCCTCAAGTCAGTCATCATT 58.815 45.455 0.00 0.00 0.00 2.57
2684 4859 2.472029 GGAAGAGATCCCCTCAAGTCA 58.528 52.381 0.00 0.00 44.40 3.41
2807 4982 4.273969 CACTAACTTTACCTTTGGAACGCA 59.726 41.667 0.00 0.00 0.00 5.24
2811 4986 7.377696 TCCTACACTAACTTTACCTTTGGAA 57.622 36.000 0.00 0.00 0.00 3.53
2812 4987 6.999705 TCCTACACTAACTTTACCTTTGGA 57.000 37.500 0.00 0.00 0.00 3.53
2814 4989 8.672823 AAGTTCCTACACTAACTTTACCTTTG 57.327 34.615 0.00 0.00 41.89 2.77
2860 5035 6.363065 AGCTTCCACTCATCATCATGTATTT 58.637 36.000 0.00 0.00 0.00 1.40
2878 5053 6.515035 CGAATGGGTAATTTTATGGAGCTTCC 60.515 42.308 0.00 0.00 36.96 3.46
2879 5054 6.438763 CGAATGGGTAATTTTATGGAGCTTC 58.561 40.000 0.00 0.00 0.00 3.86
2880 5055 5.301805 CCGAATGGGTAATTTTATGGAGCTT 59.698 40.000 0.00 0.00 0.00 3.74
2881 5056 4.827284 CCGAATGGGTAATTTTATGGAGCT 59.173 41.667 0.00 0.00 0.00 4.09
2882 5057 4.825085 TCCGAATGGGTAATTTTATGGAGC 59.175 41.667 0.00 0.00 37.00 4.70
2883 5058 7.448469 AGAATCCGAATGGGTAATTTTATGGAG 59.552 37.037 0.00 0.00 37.00 3.86
2884 5059 7.294584 AGAATCCGAATGGGTAATTTTATGGA 58.705 34.615 0.00 0.00 37.00 3.41
2885 5060 7.524717 AGAATCCGAATGGGTAATTTTATGG 57.475 36.000 0.00 0.00 37.00 2.74
2886 5061 8.082242 GGAAGAATCCGAATGGGTAATTTTATG 58.918 37.037 0.00 0.00 35.59 1.90
2887 5062 8.178313 GGAAGAATCCGAATGGGTAATTTTAT 57.822 34.615 0.00 0.00 35.59 1.40
2888 5063 7.576861 GGAAGAATCCGAATGGGTAATTTTA 57.423 36.000 0.00 0.00 35.59 1.52
2889 5064 6.465439 GGAAGAATCCGAATGGGTAATTTT 57.535 37.500 0.00 0.00 35.59 1.82
2903 5078 6.453926 AGAGTAACGTAGAAGGAAGAATCC 57.546 41.667 0.00 0.00 46.98 3.01
2904 5079 7.914871 GGTTAGAGTAACGTAGAAGGAAGAATC 59.085 40.741 0.00 0.00 39.54 2.52
2905 5080 7.395489 TGGTTAGAGTAACGTAGAAGGAAGAAT 59.605 37.037 0.00 0.00 39.54 2.40
2906 5081 6.716628 TGGTTAGAGTAACGTAGAAGGAAGAA 59.283 38.462 0.00 0.00 39.54 2.52
2907 5082 6.240894 TGGTTAGAGTAACGTAGAAGGAAGA 58.759 40.000 0.00 0.00 39.54 2.87
2908 5083 6.506500 TGGTTAGAGTAACGTAGAAGGAAG 57.493 41.667 0.00 0.00 39.54 3.46
2909 5084 6.899393 TTGGTTAGAGTAACGTAGAAGGAA 57.101 37.500 0.00 0.00 39.54 3.36
2910 5085 6.899393 TTTGGTTAGAGTAACGTAGAAGGA 57.101 37.500 0.00 0.00 39.54 3.36
2911 5086 9.813446 ATATTTTGGTTAGAGTAACGTAGAAGG 57.187 33.333 0.00 0.00 39.54 3.46
2917 5092 9.715121 TTGAAGATATTTTGGTTAGAGTAACGT 57.285 29.630 0.00 0.00 39.54 3.99
2936 5111 9.753674 TGGTAATCCAAAGAAATACTTGAAGAT 57.246 29.630 0.00 0.00 41.25 2.40
2937 5112 9.010029 GTGGTAATCCAAAGAAATACTTGAAGA 57.990 33.333 0.00 0.00 46.15 2.87
2938 5113 8.792633 TGTGGTAATCCAAAGAAATACTTGAAG 58.207 33.333 0.00 0.00 46.15 3.02
2939 5114 8.698973 TGTGGTAATCCAAAGAAATACTTGAA 57.301 30.769 0.00 0.00 46.15 2.69
2940 5115 8.698973 TTGTGGTAATCCAAAGAAATACTTGA 57.301 30.769 0.00 0.00 46.15 3.02
2941 5116 9.927668 AATTGTGGTAATCCAAAGAAATACTTG 57.072 29.630 0.00 0.00 46.15 3.16
2944 5119 9.797556 GGTAATTGTGGTAATCCAAAGAAATAC 57.202 33.333 0.00 0.00 46.15 1.89
2945 5120 9.762381 AGGTAATTGTGGTAATCCAAAGAAATA 57.238 29.630 0.00 0.00 46.15 1.40
2946 5121 8.664669 AGGTAATTGTGGTAATCCAAAGAAAT 57.335 30.769 0.00 0.00 46.15 2.17
2947 5122 7.726291 TGAGGTAATTGTGGTAATCCAAAGAAA 59.274 33.333 0.00 0.00 46.15 2.52
2948 5123 7.175990 GTGAGGTAATTGTGGTAATCCAAAGAA 59.824 37.037 0.00 0.00 46.15 2.52
2949 5124 6.657541 GTGAGGTAATTGTGGTAATCCAAAGA 59.342 38.462 0.00 0.00 46.15 2.52
2950 5125 6.659242 AGTGAGGTAATTGTGGTAATCCAAAG 59.341 38.462 0.00 0.00 46.15 2.77
2951 5126 6.432783 CAGTGAGGTAATTGTGGTAATCCAAA 59.567 38.462 0.00 0.00 46.15 3.28
2952 5127 5.943416 CAGTGAGGTAATTGTGGTAATCCAA 59.057 40.000 0.00 0.00 46.15 3.53
2953 5128 5.249622 TCAGTGAGGTAATTGTGGTAATCCA 59.750 40.000 0.00 0.00 42.05 3.41
2954 5129 5.741011 TCAGTGAGGTAATTGTGGTAATCC 58.259 41.667 0.00 0.00 0.00 3.01
2955 5130 9.561069 AATATCAGTGAGGTAATTGTGGTAATC 57.439 33.333 0.00 0.00 0.00 1.75
2956 5131 9.920946 AAATATCAGTGAGGTAATTGTGGTAAT 57.079 29.630 0.00 0.00 0.00 1.89
2957 5132 9.747898 AAAATATCAGTGAGGTAATTGTGGTAA 57.252 29.630 0.00 0.00 0.00 2.85
2959 5134 9.920946 ATAAAATATCAGTGAGGTAATTGTGGT 57.079 29.630 0.00 0.00 0.00 4.16
2968 5143 9.829507 CTTCTTGAGATAAAATATCAGTGAGGT 57.170 33.333 0.00 0.00 31.40 3.85
2978 5153 9.884636 TGGTTTCGATCTTCTTGAGATAAAATA 57.115 29.630 0.00 0.00 45.17 1.40
2979 5154 8.792830 TGGTTTCGATCTTCTTGAGATAAAAT 57.207 30.769 0.00 0.00 45.17 1.82
2980 5155 7.878127 ACTGGTTTCGATCTTCTTGAGATAAAA 59.122 33.333 0.00 0.00 45.17 1.52
2981 5156 7.386851 ACTGGTTTCGATCTTCTTGAGATAAA 58.613 34.615 0.00 0.00 45.17 1.40
2982 5157 6.936279 ACTGGTTTCGATCTTCTTGAGATAA 58.064 36.000 0.00 0.00 45.17 1.75
2983 5158 6.531503 ACTGGTTTCGATCTTCTTGAGATA 57.468 37.500 0.00 0.00 45.17 1.98
2985 5160 4.873746 ACTGGTTTCGATCTTCTTGAGA 57.126 40.909 0.00 0.00 39.13 3.27
2986 5161 5.470368 TGTACTGGTTTCGATCTTCTTGAG 58.530 41.667 0.00 0.00 0.00 3.02
2987 5162 5.462530 TGTACTGGTTTCGATCTTCTTGA 57.537 39.130 0.00 0.00 0.00 3.02
2988 5163 5.063944 CCATGTACTGGTTTCGATCTTCTTG 59.936 44.000 0.00 0.00 40.49 3.02
2989 5164 5.046591 TCCATGTACTGGTTTCGATCTTCTT 60.047 40.000 10.08 0.00 46.08 2.52
2990 5165 4.466370 TCCATGTACTGGTTTCGATCTTCT 59.534 41.667 10.08 0.00 46.08 2.85
2991 5166 4.567159 GTCCATGTACTGGTTTCGATCTTC 59.433 45.833 10.08 0.00 46.08 2.87
2992 5167 4.020573 TGTCCATGTACTGGTTTCGATCTT 60.021 41.667 10.08 0.00 46.08 2.40
2993 5168 3.513912 TGTCCATGTACTGGTTTCGATCT 59.486 43.478 10.08 0.00 46.08 2.75
2994 5169 3.617263 GTGTCCATGTACTGGTTTCGATC 59.383 47.826 10.08 0.00 46.08 3.69
2995 5170 3.260884 AGTGTCCATGTACTGGTTTCGAT 59.739 43.478 10.08 0.00 46.08 3.59
2996 5171 2.631062 AGTGTCCATGTACTGGTTTCGA 59.369 45.455 10.08 0.00 46.08 3.71
2997 5172 2.736721 CAGTGTCCATGTACTGGTTTCG 59.263 50.000 11.92 0.00 46.08 3.46
2998 5173 3.740115 ACAGTGTCCATGTACTGGTTTC 58.260 45.455 19.68 4.99 46.52 2.78
2999 5174 3.857157 ACAGTGTCCATGTACTGGTTT 57.143 42.857 19.68 3.63 46.52 3.27
3000 5175 4.267349 GTACAGTGTCCATGTACTGGTT 57.733 45.455 19.68 7.97 46.14 3.67
3001 5176 3.955650 GTACAGTGTCCATGTACTGGT 57.044 47.619 19.68 11.49 46.14 4.00
3006 5181 6.183361 TGGAAGAAAAGTACAGTGTCCATGTA 60.183 38.462 0.00 0.00 32.02 2.29
3007 5182 5.063880 GGAAGAAAAGTACAGTGTCCATGT 58.936 41.667 0.00 0.00 34.62 3.21
3008 5183 5.063204 TGGAAGAAAAGTACAGTGTCCATG 58.937 41.667 0.00 0.00 0.00 3.66
3009 5184 5.304686 TGGAAGAAAAGTACAGTGTCCAT 57.695 39.130 0.00 0.00 0.00 3.41
3010 5185 4.764050 TGGAAGAAAAGTACAGTGTCCA 57.236 40.909 0.00 0.00 0.00 4.02
3011 5186 8.258708 AGTATATGGAAGAAAAGTACAGTGTCC 58.741 37.037 0.00 0.00 0.00 4.02
3012 5187 9.303537 GAGTATATGGAAGAAAAGTACAGTGTC 57.696 37.037 0.00 0.00 0.00 3.67
3013 5188 9.036980 AGAGTATATGGAAGAAAAGTACAGTGT 57.963 33.333 0.00 0.00 0.00 3.55
3014 5189 9.522804 GAGAGTATATGGAAGAAAAGTACAGTG 57.477 37.037 0.00 0.00 0.00 3.66
3015 5190 9.482175 AGAGAGTATATGGAAGAAAAGTACAGT 57.518 33.333 0.00 0.00 0.00 3.55
3018 5193 9.902196 GCTAGAGAGTATATGGAAGAAAAGTAC 57.098 37.037 0.00 0.00 0.00 2.73
3019 5194 9.080097 GGCTAGAGAGTATATGGAAGAAAAGTA 57.920 37.037 0.00 0.00 0.00 2.24
3020 5195 7.565398 TGGCTAGAGAGTATATGGAAGAAAAGT 59.435 37.037 0.00 0.00 0.00 2.66
3021 5196 7.957002 TGGCTAGAGAGTATATGGAAGAAAAG 58.043 38.462 0.00 0.00 0.00 2.27
3022 5197 7.914427 TGGCTAGAGAGTATATGGAAGAAAA 57.086 36.000 0.00 0.00 0.00 2.29
3023 5198 7.094162 CGATGGCTAGAGAGTATATGGAAGAAA 60.094 40.741 0.00 0.00 0.00 2.52
3024 5199 6.375736 CGATGGCTAGAGAGTATATGGAAGAA 59.624 42.308 0.00 0.00 0.00 2.52
3025 5200 5.883115 CGATGGCTAGAGAGTATATGGAAGA 59.117 44.000 0.00 0.00 0.00 2.87
3026 5201 5.883115 TCGATGGCTAGAGAGTATATGGAAG 59.117 44.000 0.00 0.00 0.00 3.46
3027 5202 5.816682 TCGATGGCTAGAGAGTATATGGAA 58.183 41.667 0.00 0.00 0.00 3.53
3028 5203 5.437191 TCGATGGCTAGAGAGTATATGGA 57.563 43.478 0.00 0.00 0.00 3.41
3029 5204 5.825151 TCATCGATGGCTAGAGAGTATATGG 59.175 44.000 24.61 0.00 0.00 2.74
3030 5205 6.934048 TCATCGATGGCTAGAGAGTATATG 57.066 41.667 24.61 0.00 0.00 1.78
3031 5206 7.946381 TTTCATCGATGGCTAGAGAGTATAT 57.054 36.000 24.61 0.00 0.00 0.86
3032 5207 7.761038 TTTTCATCGATGGCTAGAGAGTATA 57.239 36.000 24.61 0.00 0.00 1.47
3033 5208 6.656632 TTTTCATCGATGGCTAGAGAGTAT 57.343 37.500 24.61 0.00 0.00 2.12
3034 5209 6.656632 ATTTTCATCGATGGCTAGAGAGTA 57.343 37.500 24.61 0.00 0.00 2.59
3035 5210 5.543507 ATTTTCATCGATGGCTAGAGAGT 57.456 39.130 24.61 0.00 0.00 3.24
3036 5211 7.151308 ACTTATTTTCATCGATGGCTAGAGAG 58.849 38.462 24.61 15.87 0.00 3.20
3037 5212 7.055667 ACTTATTTTCATCGATGGCTAGAGA 57.944 36.000 24.61 0.82 0.00 3.10
3038 5213 7.721286 AACTTATTTTCATCGATGGCTAGAG 57.279 36.000 24.61 16.70 0.00 2.43
3039 5214 7.768582 TCAAACTTATTTTCATCGATGGCTAGA 59.231 33.333 24.61 2.39 0.00 2.43
3040 5215 7.919690 TCAAACTTATTTTCATCGATGGCTAG 58.080 34.615 24.61 14.88 0.00 3.42
3041 5216 7.857734 TCAAACTTATTTTCATCGATGGCTA 57.142 32.000 24.61 10.62 0.00 3.93
3042 5217 6.757897 TCAAACTTATTTTCATCGATGGCT 57.242 33.333 24.61 9.79 0.00 4.75
3043 5218 6.473455 CCTTCAAACTTATTTTCATCGATGGC 59.527 38.462 24.61 0.00 0.00 4.40
3044 5219 7.538575 ACCTTCAAACTTATTTTCATCGATGG 58.461 34.615 24.61 9.54 0.00 3.51
3045 5220 8.236586 TGACCTTCAAACTTATTTTCATCGATG 58.763 33.333 19.61 19.61 0.00 3.84
3046 5221 8.335532 TGACCTTCAAACTTATTTTCATCGAT 57.664 30.769 0.00 0.00 0.00 3.59
3047 5222 7.573096 GCTGACCTTCAAACTTATTTTCATCGA 60.573 37.037 0.00 0.00 0.00 3.59
3048 5223 6.524586 GCTGACCTTCAAACTTATTTTCATCG 59.475 38.462 0.00 0.00 0.00 3.84
3049 5224 7.370383 TGCTGACCTTCAAACTTATTTTCATC 58.630 34.615 0.00 0.00 0.00 2.92
3050 5225 7.288810 TGCTGACCTTCAAACTTATTTTCAT 57.711 32.000 0.00 0.00 0.00 2.57
3051 5226 6.707440 TGCTGACCTTCAAACTTATTTTCA 57.293 33.333 0.00 0.00 0.00 2.69
3052 5227 7.203218 AGTTGCTGACCTTCAAACTTATTTTC 58.797 34.615 0.00 0.00 26.47 2.29
3053 5228 7.112452 AGTTGCTGACCTTCAAACTTATTTT 57.888 32.000 0.00 0.00 26.47 1.82
3054 5229 6.715347 AGTTGCTGACCTTCAAACTTATTT 57.285 33.333 0.00 0.00 26.47 1.40
3055 5230 7.148407 CGATAGTTGCTGACCTTCAAACTTATT 60.148 37.037 0.00 0.00 31.89 1.40
3056 5231 6.313905 CGATAGTTGCTGACCTTCAAACTTAT 59.686 38.462 0.00 0.00 31.89 1.73
3057 5232 5.637810 CGATAGTTGCTGACCTTCAAACTTA 59.362 40.000 0.00 0.00 31.89 2.24
3058 5233 4.452455 CGATAGTTGCTGACCTTCAAACTT 59.548 41.667 0.00 0.00 31.89 2.66
3059 5234 3.997021 CGATAGTTGCTGACCTTCAAACT 59.003 43.478 0.00 0.00 33.49 2.66
3060 5235 3.994392 TCGATAGTTGCTGACCTTCAAAC 59.006 43.478 0.00 0.00 37.40 2.93
3061 5236 4.245660 CTCGATAGTTGCTGACCTTCAAA 58.754 43.478 0.00 0.00 37.40 2.69
3062 5237 3.258372 ACTCGATAGTTGCTGACCTTCAA 59.742 43.478 0.00 0.00 29.00 2.69
3063 5238 2.826128 ACTCGATAGTTGCTGACCTTCA 59.174 45.455 0.00 0.00 29.00 3.02
3064 5239 3.512033 ACTCGATAGTTGCTGACCTTC 57.488 47.619 0.00 0.00 29.00 3.46
3065 5240 4.463186 ACTTACTCGATAGTTGCTGACCTT 59.537 41.667 0.00 0.00 37.15 3.50
3066 5241 4.017808 ACTTACTCGATAGTTGCTGACCT 58.982 43.478 0.00 0.00 37.15 3.85
3067 5242 4.373348 ACTTACTCGATAGTTGCTGACC 57.627 45.455 0.00 0.00 37.15 4.02
3068 5243 5.399892 GCATACTTACTCGATAGTTGCTGAC 59.600 44.000 14.67 0.00 37.15 3.51
3069 5244 5.507482 GGCATACTTACTCGATAGTTGCTGA 60.507 44.000 17.82 0.50 37.15 4.26
3070 5245 4.681942 GGCATACTTACTCGATAGTTGCTG 59.318 45.833 17.82 9.66 37.15 4.41
3071 5246 4.341235 TGGCATACTTACTCGATAGTTGCT 59.659 41.667 17.82 0.00 37.15 3.91
3072 5247 4.444720 GTGGCATACTTACTCGATAGTTGC 59.555 45.833 0.00 14.14 37.15 4.17
3073 5248 4.982916 GGTGGCATACTTACTCGATAGTTG 59.017 45.833 0.00 2.22 37.15 3.16
3074 5249 4.647853 TGGTGGCATACTTACTCGATAGTT 59.352 41.667 0.00 0.00 37.15 2.24
3075 5250 4.212716 TGGTGGCATACTTACTCGATAGT 58.787 43.478 0.00 0.00 39.91 2.12
3076 5251 4.799678 CTGGTGGCATACTTACTCGATAG 58.200 47.826 0.00 0.00 0.00 2.08
3077 5252 3.005472 GCTGGTGGCATACTTACTCGATA 59.995 47.826 0.00 0.00 41.35 2.92
3078 5253 2.224066 GCTGGTGGCATACTTACTCGAT 60.224 50.000 0.00 0.00 41.35 3.59
3079 5254 1.136305 GCTGGTGGCATACTTACTCGA 59.864 52.381 0.00 0.00 41.35 4.04
3080 5255 1.571919 GCTGGTGGCATACTTACTCG 58.428 55.000 0.00 0.00 41.35 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.