Multiple sequence alignment - TraesCS6A01G002700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G002700 chr6A 100.000 3410 0 0 1 3410 1032790 1029381 0.000000e+00 6298.0
1 TraesCS6A01G002700 chr6A 90.000 60 5 1 274 332 1031851 1031792 3.650000e-10 76.8
2 TraesCS6A01G002700 chr6A 90.000 60 5 1 940 999 1032517 1032459 3.650000e-10 76.8
3 TraesCS6A01G002700 chr6A 97.059 34 0 1 589 621 1032100 1032067 4.750000e-04 56.5
4 TraesCS6A01G002700 chr6A 97.059 34 0 1 691 724 1032202 1032170 4.750000e-04 56.5
5 TraesCS6A01G002700 chr6D 95.196 2498 81 18 942 3410 1587006 1589493 0.000000e+00 3912.0
6 TraesCS6A01G002700 chr6D 95.522 335 14 1 1 334 1585730 1586064 5.010000e-148 534.0
7 TraesCS6A01G002700 chr6D 86.347 271 34 3 65 332 1586793 1587063 3.330000e-75 292.0
8 TraesCS6A01G002700 chr6D 87.225 227 16 5 931 1157 1585994 1586207 2.630000e-61 246.0
9 TraesCS6A01G002700 chr6D 89.617 183 13 1 335 511 252738091 252738273 9.520000e-56 228.0
10 TraesCS6A01G002700 chr6B 86.447 1697 128 58 977 2653 4943046 4944660 0.000000e+00 1766.0
11 TraesCS6A01G002700 chr1D 89.909 991 92 5 1419 2408 415435979 415434996 0.000000e+00 1269.0
12 TraesCS6A01G002700 chr1D 82.305 243 38 5 59 298 452489597 452489837 4.460000e-49 206.0
13 TraesCS6A01G002700 chr1D 91.304 46 2 1 23 68 479387084 479387041 1.020000e-05 62.1
14 TraesCS6A01G002700 chr1B 89.829 993 89 8 1419 2408 561753968 561752985 0.000000e+00 1264.0
15 TraesCS6A01G002700 chr1B 89.109 202 18 3 745 942 423584308 423584107 7.310000e-62 248.0
16 TraesCS6A01G002700 chr1A 89.596 990 97 2 1419 2408 513159424 513158441 0.000000e+00 1253.0
17 TraesCS6A01G002700 chr1A 89.529 191 19 1 753 942 510841768 510841578 1.220000e-59 241.0
18 TraesCS6A01G002700 chr1A 79.478 268 24 12 3080 3319 132486597 132486861 9.790000e-36 161.0
19 TraesCS6A01G002700 chr5B 87.107 985 119 5 1423 2406 511346518 511347495 0.000000e+00 1109.0
20 TraesCS6A01G002700 chr5B 88.249 434 46 4 2974 3406 558711000 558711429 6.530000e-142 514.0
21 TraesCS6A01G002700 chr5B 90.769 195 16 2 753 945 529617348 529617542 3.380000e-65 259.0
22 TraesCS6A01G002700 chr5B 83.621 232 34 3 70 298 320386531 320386301 7.410000e-52 215.0
23 TraesCS6A01G002700 chr5A 86.701 985 118 6 1423 2406 537019061 537020033 0.000000e+00 1081.0
24 TraesCS6A01G002700 chr3B 90.431 418 38 2 2992 3408 720955908 720955492 1.790000e-152 549.0
25 TraesCS6A01G002700 chr3B 89.637 193 17 2 753 942 389770752 389770560 3.400000e-60 243.0
26 TraesCS6A01G002700 chr3B 95.000 40 2 0 615 654 76490644 76490605 2.840000e-06 63.9
27 TraesCS6A01G002700 chr7B 85.745 463 55 6 2952 3408 25656713 25657170 2.380000e-131 479.0
28 TraesCS6A01G002700 chr7B 91.099 191 16 1 753 942 424832551 424832361 1.210000e-64 257.0
29 TraesCS6A01G002700 chr7B 91.667 144 12 0 3096 3239 69819087 69818944 2.080000e-47 200.0
30 TraesCS6A01G002700 chr7A 85.808 458 45 10 2956 3408 116005136 116004694 5.150000e-128 468.0
31 TraesCS6A01G002700 chr7A 88.832 197 19 3 753 946 143342763 143342567 4.400000e-59 239.0
32 TraesCS6A01G002700 chr7D 87.121 396 45 4 3015 3408 78303847 78304238 8.680000e-121 444.0
33 TraesCS6A01G002700 chr7D 90.761 184 11 1 334 511 43987005 43987188 1.220000e-59 241.0
34 TraesCS6A01G002700 chr7D 90.761 184 11 1 334 511 43988216 43988399 1.220000e-59 241.0
35 TraesCS6A01G002700 chr7D 90.217 184 12 1 334 511 43989424 43989607 5.690000e-58 235.0
36 TraesCS6A01G002700 chr3A 92.105 304 22 2 3107 3408 681458348 681458045 8.740000e-116 427.0
37 TraesCS6A01G002700 chr3D 90.566 318 24 4 3094 3408 544780845 544780531 1.890000e-112 416.0
38 TraesCS6A01G002700 chr3D 95.050 101 5 0 2955 3055 544781227 544781127 3.520000e-35 159.0
39 TraesCS6A01G002700 chr2B 87.017 362 36 6 2955 3313 253278140 253278493 6.860000e-107 398.0
40 TraesCS6A01G002700 chr2B 88.670 203 19 4 746 944 200861187 200861389 9.450000e-61 244.0
41 TraesCS6A01G002700 chr2B 84.810 237 31 5 65 298 755034734 755034500 2.050000e-57 233.0
42 TraesCS6A01G002700 chr2B 81.590 239 38 3 65 298 58720031 58720268 3.470000e-45 193.0
43 TraesCS6A01G002700 chr2A 90.594 202 15 3 745 942 403802031 403801830 7.260000e-67 265.0
44 TraesCS6A01G002700 chr2A 89.706 204 15 5 745 942 401830377 401830174 4.370000e-64 255.0
45 TraesCS6A01G002700 chr2A 90.270 185 12 1 335 513 339090645 339090829 1.580000e-58 237.0
46 TraesCS6A01G002700 chrUn 90.761 184 11 1 334 511 336901152 336901335 1.220000e-59 241.0
47 TraesCS6A01G002700 chrUn 90.761 184 11 1 334 511 336902363 336902546 1.220000e-59 241.0
48 TraesCS6A01G002700 chr4D 89.730 185 13 1 334 512 37936576 37936760 7.360000e-57 231.0
49 TraesCS6A01G002700 chr4B 89.730 185 14 1 334 513 178645657 178645473 7.360000e-57 231.0
50 TraesCS6A01G002700 chr4B 85.271 129 16 2 1439 1567 6958269 6958144 2.760000e-26 130.0
51 TraesCS6A01G002700 chr5D 88.060 67 8 0 1658 1724 564931900 564931966 2.820000e-11 80.5
52 TraesCS6A01G002700 chr4A 86.567 67 9 0 1658 1724 606373395 606373461 1.310000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G002700 chr6A 1029381 1032790 3409 True 1312.92 6298 94.823600 1 3410 5 chr6A.!!$R1 3409
1 TraesCS6A01G002700 chr6D 1585730 1589493 3763 False 1246.00 3912 91.072500 1 3410 4 chr6D.!!$F2 3409
2 TraesCS6A01G002700 chr6B 4943046 4944660 1614 False 1766.00 1766 86.447000 977 2653 1 chr6B.!!$F1 1676
3 TraesCS6A01G002700 chr1D 415434996 415435979 983 True 1269.00 1269 89.909000 1419 2408 1 chr1D.!!$R1 989
4 TraesCS6A01G002700 chr1B 561752985 561753968 983 True 1264.00 1264 89.829000 1419 2408 1 chr1B.!!$R2 989
5 TraesCS6A01G002700 chr1A 513158441 513159424 983 True 1253.00 1253 89.596000 1419 2408 1 chr1A.!!$R2 989
6 TraesCS6A01G002700 chr5B 511346518 511347495 977 False 1109.00 1109 87.107000 1423 2406 1 chr5B.!!$F1 983
7 TraesCS6A01G002700 chr5A 537019061 537020033 972 False 1081.00 1081 86.701000 1423 2406 1 chr5A.!!$F1 983
8 TraesCS6A01G002700 chr7D 43987005 43989607 2602 False 239.00 241 90.579667 334 511 3 chr7D.!!$F2 177
9 TraesCS6A01G002700 chr3D 544780531 544781227 696 True 287.50 416 92.808000 2955 3408 2 chr3D.!!$R1 453
10 TraesCS6A01G002700 chrUn 336901152 336902546 1394 False 241.00 241 90.761000 334 511 2 chrUn.!!$F1 177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1529 0.040204 AAGGTGAAGCATTGGGAGGG 59.96 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2731 4657 2.435069 TCTTCCAACTTGAACGGGTACA 59.565 45.455 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 7.792364 GGCTTTATTAGGCCCCTAATATTTT 57.208 36.000 21.43 5.35 45.37 1.82
278 279 6.582929 AACCTAAAATGAGAGGAGCCTAAT 57.417 37.500 0.00 0.00 36.61 1.73
287 288 5.219739 TGAGAGGAGCCTAATAAACCTGAT 58.780 41.667 0.00 0.00 0.00 2.90
298 299 5.952347 AATAAACCTGATCGGAGGTAGTT 57.048 39.130 2.08 0.00 46.29 2.24
304 306 3.315749 CCTGATCGGAGGTAGTTGTACTC 59.684 52.174 2.08 0.00 33.16 2.59
511 600 6.776744 ACTAAAAAGAAACGGAGGGAGTATT 58.223 36.000 0.00 0.00 0.00 1.89
528 1084 6.235664 GGAGTATTTCCATCCGGCTTTATTA 58.764 40.000 0.00 0.00 46.01 0.98
543 1099 6.436218 CGGCTTTATTAGGCCCCTAATATTTT 59.564 38.462 21.43 5.35 45.37 1.82
544 1100 7.039293 CGGCTTTATTAGGCCCCTAATATTTTT 60.039 37.037 21.43 4.77 45.37 1.94
545 1101 8.094548 GGCTTTATTAGGCCCCTAATATTTTTG 58.905 37.037 21.43 13.36 45.37 2.44
546 1102 8.647796 GCTTTATTAGGCCCCTAATATTTTTGT 58.352 33.333 21.43 3.59 45.37 2.83
547 1103 9.981114 CTTTATTAGGCCCCTAATATTTTTGTG 57.019 33.333 21.43 8.31 45.37 3.33
548 1104 9.716556 TTTATTAGGCCCCTAATATTTTTGTGA 57.283 29.630 21.43 7.03 45.37 3.58
549 1105 7.597288 ATTAGGCCCCTAATATTTTTGTGAC 57.403 36.000 16.06 0.00 44.59 3.67
551 1107 4.709886 AGGCCCCTAATATTTTTGTGACAC 59.290 41.667 0.00 0.00 0.00 3.67
552 1108 4.709886 GGCCCCTAATATTTTTGTGACACT 59.290 41.667 7.20 0.00 0.00 3.55
553 1109 5.889289 GGCCCCTAATATTTTTGTGACACTA 59.111 40.000 7.20 0.00 0.00 2.74
627 1212 8.211838 GCTTTCCAAACGTATAATTTTTGTGAC 58.788 33.333 0.00 0.00 0.00 3.67
629 1214 8.563289 TTCCAAACGTATAATTTTTGTGACAC 57.437 30.769 0.00 0.00 0.00 3.67
679 1271 7.145932 TCAAACTTTAGCCTAAAATGAGAGC 57.854 36.000 0.00 0.00 0.00 4.09
680 1272 6.942576 TCAAACTTTAGCCTAAAATGAGAGCT 59.057 34.615 0.00 0.00 37.58 4.09
681 1273 7.448469 TCAAACTTTAGCCTAAAATGAGAGCTT 59.552 33.333 0.00 0.00 35.03 3.74
682 1274 7.767250 AACTTTAGCCTAAAATGAGAGCTTT 57.233 32.000 0.00 0.00 35.03 3.51
684 1276 6.375736 ACTTTAGCCTAAAATGAGAGCTTTCC 59.624 38.462 1.16 0.00 35.03 3.13
685 1277 4.307032 AGCCTAAAATGAGAGCTTTCCA 57.693 40.909 1.16 0.00 0.00 3.53
686 1278 4.666512 AGCCTAAAATGAGAGCTTTCCAA 58.333 39.130 1.16 0.00 0.00 3.53
687 1279 5.079643 AGCCTAAAATGAGAGCTTTCCAAA 58.920 37.500 1.16 0.00 0.00 3.28
688 1280 5.047731 AGCCTAAAATGAGAGCTTTCCAAAC 60.048 40.000 1.16 0.00 0.00 2.93
689 1281 5.393962 CCTAAAATGAGAGCTTTCCAAACG 58.606 41.667 1.16 0.00 0.00 3.60
690 1282 4.918810 AAAATGAGAGCTTTCCAAACGT 57.081 36.364 1.16 0.00 0.00 3.99
691 1283 6.148811 CCTAAAATGAGAGCTTTCCAAACGTA 59.851 38.462 1.16 0.00 0.00 3.57
692 1284 6.575162 AAAATGAGAGCTTTCCAAACGTAT 57.425 33.333 1.16 0.00 0.00 3.06
693 1285 7.681939 AAAATGAGAGCTTTCCAAACGTATA 57.318 32.000 1.16 0.00 0.00 1.47
694 1286 7.681939 AAATGAGAGCTTTCCAAACGTATAA 57.318 32.000 1.16 0.00 0.00 0.98
695 1287 7.865706 AATGAGAGCTTTCCAAACGTATAAT 57.134 32.000 1.16 0.00 0.00 1.28
696 1288 7.865706 ATGAGAGCTTTCCAAACGTATAATT 57.134 32.000 1.16 0.00 0.00 1.40
697 1289 7.681939 TGAGAGCTTTCCAAACGTATAATTT 57.318 32.000 1.16 0.00 0.00 1.82
698 1290 7.526608 TGAGAGCTTTCCAAACGTATAATTTG 58.473 34.615 1.16 4.43 36.90 2.32
699 1291 7.389330 TGAGAGCTTTCCAAACGTATAATTTGA 59.611 33.333 1.16 0.00 39.01 2.69
700 1292 8.106247 AGAGCTTTCCAAACGTATAATTTGAA 57.894 30.769 10.82 0.00 39.01 2.69
701 1293 8.573035 AGAGCTTTCCAAACGTATAATTTGAAA 58.427 29.630 10.82 0.00 39.01 2.69
702 1294 8.742554 AGCTTTCCAAACGTATAATTTGAAAG 57.257 30.769 15.01 15.01 39.01 2.62
703 1295 8.573035 AGCTTTCCAAACGTATAATTTGAAAGA 58.427 29.630 20.14 1.24 39.01 2.52
704 1296 8.850452 GCTTTCCAAACGTATAATTTGAAAGAG 58.150 33.333 20.14 6.83 39.01 2.85
705 1297 8.736751 TTTCCAAACGTATAATTTGAAAGAGC 57.263 30.769 10.82 0.00 39.01 4.09
706 1298 7.681939 TCCAAACGTATAATTTGAAAGAGCT 57.318 32.000 10.82 0.00 39.01 4.09
707 1299 8.106247 TCCAAACGTATAATTTGAAAGAGCTT 57.894 30.769 10.82 0.00 39.01 3.74
708 1300 8.573035 TCCAAACGTATAATTTGAAAGAGCTTT 58.427 29.630 10.82 0.00 39.01 3.51
709 1301 8.850452 CCAAACGTATAATTTGAAAGAGCTTTC 58.150 33.333 14.42 14.42 46.71 2.62
710 1302 8.850452 CAAACGTATAATTTGAAAGAGCTTTCC 58.150 33.333 17.57 3.80 46.15 3.13
711 1303 7.681939 ACGTATAATTTGAAAGAGCTTTCCA 57.318 32.000 17.57 6.58 46.15 3.53
712 1304 8.106247 ACGTATAATTTGAAAGAGCTTTCCAA 57.894 30.769 17.57 14.03 46.15 3.53
713 1305 8.573035 ACGTATAATTTGAAAGAGCTTTCCAAA 58.427 29.630 17.57 16.53 46.15 3.28
714 1306 8.850452 CGTATAATTTGAAAGAGCTTTCCAAAC 58.150 33.333 17.57 8.90 46.15 2.93
715 1307 7.873739 ATAATTTGAAAGAGCTTTCCAAACG 57.126 32.000 17.57 0.00 46.15 3.60
716 1308 4.712122 TTTGAAAGAGCTTTCCAAACGT 57.288 36.364 17.57 0.00 46.15 3.99
717 1309 5.821516 TTTGAAAGAGCTTTCCAAACGTA 57.178 34.783 17.57 0.00 46.15 3.57
718 1310 6.385649 TTTGAAAGAGCTTTCCAAACGTAT 57.614 33.333 17.57 0.00 46.15 3.06
719 1311 7.499321 TTTGAAAGAGCTTTCCAAACGTATA 57.501 32.000 17.57 0.00 46.15 1.47
720 1312 7.499321 TTGAAAGAGCTTTCCAAACGTATAA 57.501 32.000 17.57 2.60 46.15 0.98
721 1313 7.681939 TGAAAGAGCTTTCCAAACGTATAAT 57.318 32.000 17.57 0.00 46.15 1.28
722 1314 8.106247 TGAAAGAGCTTTCCAAACGTATAATT 57.894 30.769 17.57 0.00 46.15 1.40
723 1315 8.573035 TGAAAGAGCTTTCCAAACGTATAATTT 58.427 29.630 17.57 0.00 46.15 1.82
724 1316 8.742554 AAAGAGCTTTCCAAACGTATAATTTG 57.257 30.769 0.00 4.43 36.90 2.32
725 1317 7.681939 AGAGCTTTCCAAACGTATAATTTGA 57.318 32.000 10.82 0.00 39.01 2.69
726 1318 8.106247 AGAGCTTTCCAAACGTATAATTTGAA 57.894 30.769 10.82 0.00 39.01 2.69
727 1319 8.573035 AGAGCTTTCCAAACGTATAATTTGAAA 58.427 29.630 10.82 0.00 39.01 2.69
728 1320 9.187455 GAGCTTTCCAAACGTATAATTTGAAAA 57.813 29.630 10.82 4.41 39.01 2.29
729 1321 9.535878 AGCTTTCCAAACGTATAATTTGAAAAA 57.464 25.926 10.82 9.71 39.01 1.94
730 1322 9.791838 GCTTTCCAAACGTATAATTTGAAAAAG 57.208 29.630 19.28 19.28 39.01 2.27
731 1323 9.791838 CTTTCCAAACGTATAATTTGAAAAAGC 57.208 29.630 10.82 0.00 39.01 3.51
732 1324 9.535878 TTTCCAAACGTATAATTTGAAAAAGCT 57.464 25.926 10.82 0.00 39.01 3.74
733 1325 9.535878 TTCCAAACGTATAATTTGAAAAAGCTT 57.464 25.926 10.82 0.00 39.01 3.74
734 1326 9.535878 TCCAAACGTATAATTTGAAAAAGCTTT 57.464 25.926 5.69 5.69 39.01 3.51
735 1327 9.791838 CCAAACGTATAATTTGAAAAAGCTTTC 57.208 29.630 13.10 1.12 39.01 2.62
736 1328 9.791838 CAAACGTATAATTTGAAAAAGCTTTCC 57.208 29.630 13.10 8.29 40.31 3.13
737 1329 9.535878 AAACGTATAATTTGAAAAAGCTTTCCA 57.464 25.926 13.10 10.88 40.31 3.53
738 1330 9.535878 AACGTATAATTTGAAAAAGCTTTCCAA 57.464 25.926 13.10 16.01 40.31 3.53
739 1331 9.535878 ACGTATAATTTGAAAAAGCTTTCCAAA 57.464 25.926 27.24 27.24 40.31 3.28
740 1332 9.791838 CGTATAATTTGAAAAAGCTTTCCAAAC 57.208 29.630 27.45 19.39 40.31 2.93
741 1333 9.791838 GTATAATTTGAAAAAGCTTTCCAAACG 57.208 29.630 27.45 0.00 40.31 3.60
742 1334 6.735678 AATTTGAAAAAGCTTTCCAAACGT 57.264 29.167 27.45 20.20 40.31 3.99
743 1335 7.835634 AATTTGAAAAAGCTTTCCAAACGTA 57.164 28.000 27.45 15.21 40.31 3.57
744 1336 8.432110 AATTTGAAAAAGCTTTCCAAACGTAT 57.568 26.923 27.45 16.73 40.31 3.06
745 1337 9.535878 AATTTGAAAAAGCTTTCCAAACGTATA 57.464 25.926 27.45 14.47 40.31 1.47
746 1338 8.928270 TTTGAAAAAGCTTTCCAAACGTATAA 57.072 26.923 24.09 10.10 40.31 0.98
747 1339 9.535878 TTTGAAAAAGCTTTCCAAACGTATAAT 57.464 25.926 24.09 1.64 40.31 1.28
748 1340 9.535878 TTGAAAAAGCTTTCCAAACGTATAATT 57.464 25.926 13.10 0.00 40.31 1.40
749 1341 9.535878 TGAAAAAGCTTTCCAAACGTATAATTT 57.464 25.926 13.10 0.00 40.31 1.82
753 1345 8.880878 AAGCTTTCCAAACGTATAATTTTTGT 57.119 26.923 0.00 0.00 0.00 2.83
754 1346 8.293114 AGCTTTCCAAACGTATAATTTTTGTG 57.707 30.769 0.00 0.00 0.00 3.33
755 1347 7.007117 GCTTTCCAAACGTATAATTTTTGTGC 58.993 34.615 0.00 0.00 0.00 4.57
756 1348 7.409465 TTTCCAAACGTATAATTTTTGTGCC 57.591 32.000 0.00 0.00 0.00 5.01
757 1349 6.085555 TCCAAACGTATAATTTTTGTGCCA 57.914 33.333 0.00 0.00 0.00 4.92
758 1350 6.513180 TCCAAACGTATAATTTTTGTGCCAA 58.487 32.000 0.00 0.00 0.00 4.52
759 1351 6.642950 TCCAAACGTATAATTTTTGTGCCAAG 59.357 34.615 0.00 0.00 0.00 3.61
760 1352 6.295857 CAAACGTATAATTTTTGTGCCAAGC 58.704 36.000 0.00 0.00 0.00 4.01
761 1353 5.385509 ACGTATAATTTTTGTGCCAAGCT 57.614 34.783 0.00 0.00 0.00 3.74
762 1354 5.778862 ACGTATAATTTTTGTGCCAAGCTT 58.221 33.333 0.00 0.00 0.00 3.74
763 1355 5.861787 ACGTATAATTTTTGTGCCAAGCTTC 59.138 36.000 0.00 0.00 0.00 3.86
764 1356 5.861251 CGTATAATTTTTGTGCCAAGCTTCA 59.139 36.000 0.00 0.00 0.00 3.02
765 1357 6.531240 CGTATAATTTTTGTGCCAAGCTTCAT 59.469 34.615 0.00 0.00 0.00 2.57
766 1358 6.730960 ATAATTTTTGTGCCAAGCTTCATG 57.269 33.333 0.00 0.00 0.00 3.07
767 1359 1.868469 TTTTGTGCCAAGCTTCATGC 58.132 45.000 0.00 0.00 43.29 4.06
768 1360 0.751452 TTTGTGCCAAGCTTCATGCA 59.249 45.000 10.01 10.01 45.94 3.96
769 1361 0.970640 TTGTGCCAAGCTTCATGCAT 59.029 45.000 15.51 0.00 45.94 3.96
770 1362 0.970640 TGTGCCAAGCTTCATGCATT 59.029 45.000 15.51 0.00 45.94 3.56
771 1363 1.345089 TGTGCCAAGCTTCATGCATTT 59.655 42.857 15.51 0.00 45.94 2.32
772 1364 2.561858 TGTGCCAAGCTTCATGCATTTA 59.438 40.909 15.51 5.71 45.94 1.40
773 1365 3.006644 TGTGCCAAGCTTCATGCATTTAA 59.993 39.130 15.51 0.00 45.94 1.52
774 1366 4.186159 GTGCCAAGCTTCATGCATTTAAT 58.814 39.130 15.51 0.00 45.94 1.40
775 1367 4.632688 GTGCCAAGCTTCATGCATTTAATT 59.367 37.500 15.51 0.00 45.94 1.40
776 1368 5.811613 GTGCCAAGCTTCATGCATTTAATTA 59.188 36.000 15.51 0.00 45.94 1.40
777 1369 6.019318 GTGCCAAGCTTCATGCATTTAATTAG 60.019 38.462 15.51 0.00 45.94 1.73
778 1370 6.044682 GCCAAGCTTCATGCATTTAATTAGT 58.955 36.000 0.00 0.00 45.94 2.24
779 1371 6.536224 GCCAAGCTTCATGCATTTAATTAGTT 59.464 34.615 0.00 0.00 45.94 2.24
780 1372 7.464977 GCCAAGCTTCATGCATTTAATTAGTTG 60.465 37.037 0.00 0.00 45.94 3.16
781 1373 7.546667 CCAAGCTTCATGCATTTAATTAGTTGT 59.453 33.333 0.00 0.00 45.94 3.32
782 1374 9.571810 CAAGCTTCATGCATTTAATTAGTTGTA 57.428 29.630 0.00 0.00 45.94 2.41
783 1375 9.793252 AAGCTTCATGCATTTAATTAGTTGTAG 57.207 29.630 0.00 0.00 45.94 2.74
784 1376 9.177608 AGCTTCATGCATTTAATTAGTTGTAGA 57.822 29.630 0.00 0.00 45.94 2.59
785 1377 9.226345 GCTTCATGCATTTAATTAGTTGTAGAC 57.774 33.333 0.00 0.00 42.31 2.59
788 1380 9.665719 TCATGCATTTAATTAGTTGTAGACTCA 57.334 29.630 0.00 0.00 39.86 3.41
789 1381 9.926751 CATGCATTTAATTAGTTGTAGACTCAG 57.073 33.333 0.00 0.00 39.86 3.35
790 1382 9.890629 ATGCATTTAATTAGTTGTAGACTCAGA 57.109 29.630 0.00 0.00 39.86 3.27
791 1383 9.719355 TGCATTTAATTAGTTGTAGACTCAGAA 57.281 29.630 0.00 0.00 39.86 3.02
800 1392 9.587772 TTAGTTGTAGACTCAGAATTATGCTTC 57.412 33.333 0.00 0.00 39.86 3.86
801 1393 7.044798 AGTTGTAGACTCAGAATTATGCTTCC 58.955 38.462 0.00 0.00 31.20 3.46
802 1394 6.544928 TGTAGACTCAGAATTATGCTTCCA 57.455 37.500 0.00 0.00 0.00 3.53
803 1395 6.577103 TGTAGACTCAGAATTATGCTTCCAG 58.423 40.000 0.00 0.00 0.00 3.86
804 1396 4.450053 AGACTCAGAATTATGCTTCCAGC 58.550 43.478 0.00 0.00 42.82 4.85
805 1397 4.163839 AGACTCAGAATTATGCTTCCAGCT 59.836 41.667 0.00 0.00 42.97 4.24
806 1398 5.365025 AGACTCAGAATTATGCTTCCAGCTA 59.635 40.000 0.00 0.00 42.97 3.32
807 1399 5.609423 ACTCAGAATTATGCTTCCAGCTAG 58.391 41.667 0.00 0.00 42.97 3.42
808 1400 4.965814 TCAGAATTATGCTTCCAGCTAGG 58.034 43.478 0.00 0.00 42.97 3.02
809 1401 4.410228 TCAGAATTATGCTTCCAGCTAGGT 59.590 41.667 0.00 0.00 42.97 3.08
810 1402 5.602561 TCAGAATTATGCTTCCAGCTAGGTA 59.397 40.000 0.00 0.00 42.97 3.08
811 1403 5.698545 CAGAATTATGCTTCCAGCTAGGTAC 59.301 44.000 0.00 0.00 42.97 3.34
812 1404 5.366768 AGAATTATGCTTCCAGCTAGGTACA 59.633 40.000 0.00 0.00 42.97 2.90
813 1405 2.990066 ATGCTTCCAGCTAGGTACAC 57.010 50.000 0.00 0.00 42.97 2.90
814 1406 0.530744 TGCTTCCAGCTAGGTACACG 59.469 55.000 0.00 0.00 42.97 4.49
815 1407 0.531200 GCTTCCAGCTAGGTACACGT 59.469 55.000 0.00 0.00 38.45 4.49
816 1408 1.736032 GCTTCCAGCTAGGTACACGTG 60.736 57.143 15.48 15.48 38.45 4.49
817 1409 0.245539 TTCCAGCTAGGTACACGTGC 59.754 55.000 17.22 0.00 39.02 5.34
818 1410 0.611062 TCCAGCTAGGTACACGTGCT 60.611 55.000 17.22 7.47 39.02 4.40
819 1411 0.246635 CCAGCTAGGTACACGTGCTT 59.753 55.000 17.22 0.00 0.00 3.91
820 1412 1.475280 CCAGCTAGGTACACGTGCTTA 59.525 52.381 17.22 0.00 0.00 3.09
821 1413 2.479730 CCAGCTAGGTACACGTGCTTAG 60.480 54.545 17.22 11.33 0.00 2.18
822 1414 2.163815 CAGCTAGGTACACGTGCTTAGT 59.836 50.000 17.22 0.00 29.93 2.24
823 1415 3.376234 CAGCTAGGTACACGTGCTTAGTA 59.624 47.826 17.22 0.00 29.93 1.82
824 1416 3.376546 AGCTAGGTACACGTGCTTAGTAC 59.623 47.826 17.22 10.03 37.87 2.73
830 1422 5.446031 GTACACGTGCTTAGTACCATTTC 57.554 43.478 17.22 0.00 33.71 2.17
831 1423 4.267349 ACACGTGCTTAGTACCATTTCT 57.733 40.909 17.22 0.00 0.00 2.52
832 1424 4.638304 ACACGTGCTTAGTACCATTTCTT 58.362 39.130 17.22 0.00 0.00 2.52
833 1425 4.689345 ACACGTGCTTAGTACCATTTCTTC 59.311 41.667 17.22 0.00 0.00 2.87
834 1426 4.092968 CACGTGCTTAGTACCATTTCTTCC 59.907 45.833 0.82 0.00 0.00 3.46
835 1427 4.020485 ACGTGCTTAGTACCATTTCTTCCT 60.020 41.667 0.00 0.00 0.00 3.36
836 1428 4.330074 CGTGCTTAGTACCATTTCTTCCTG 59.670 45.833 0.00 0.00 0.00 3.86
837 1429 4.636206 GTGCTTAGTACCATTTCTTCCTGG 59.364 45.833 0.00 0.00 38.55 4.45
838 1430 4.200092 GCTTAGTACCATTTCTTCCTGGG 58.800 47.826 0.00 0.00 36.82 4.45
839 1431 4.324331 GCTTAGTACCATTTCTTCCTGGGT 60.324 45.833 0.00 0.00 36.82 4.51
840 1432 5.429130 CTTAGTACCATTTCTTCCTGGGTC 58.571 45.833 0.00 0.00 36.82 4.46
841 1433 3.256704 AGTACCATTTCTTCCTGGGTCA 58.743 45.455 0.00 0.00 36.82 4.02
842 1434 2.586648 ACCATTTCTTCCTGGGTCAC 57.413 50.000 0.00 0.00 36.82 3.67
843 1435 1.075536 ACCATTTCTTCCTGGGTCACC 59.924 52.381 0.00 0.00 36.82 4.02
844 1436 1.075374 CCATTTCTTCCTGGGTCACCA 59.925 52.381 0.00 0.00 46.94 4.17
855 1447 3.468071 TGGGTCACCATAGTACTGTCT 57.532 47.619 5.39 0.00 43.37 3.41
856 1448 3.362706 TGGGTCACCATAGTACTGTCTC 58.637 50.000 5.39 0.00 43.37 3.36
857 1449 3.011369 TGGGTCACCATAGTACTGTCTCT 59.989 47.826 5.39 0.00 43.37 3.10
858 1450 3.633065 GGGTCACCATAGTACTGTCTCTC 59.367 52.174 5.39 0.00 36.50 3.20
859 1451 4.528920 GGTCACCATAGTACTGTCTCTCT 58.471 47.826 5.39 0.00 0.00 3.10
860 1452 4.951094 GGTCACCATAGTACTGTCTCTCTT 59.049 45.833 5.39 0.00 0.00 2.85
861 1453 5.066764 GGTCACCATAGTACTGTCTCTCTTC 59.933 48.000 5.39 0.00 0.00 2.87
862 1454 5.066764 GTCACCATAGTACTGTCTCTCTTCC 59.933 48.000 5.39 0.00 0.00 3.46
863 1455 5.044772 TCACCATAGTACTGTCTCTCTTCCT 60.045 44.000 5.39 0.00 0.00 3.36
864 1456 6.158169 TCACCATAGTACTGTCTCTCTTCCTA 59.842 42.308 5.39 0.00 0.00 2.94
865 1457 6.829298 CACCATAGTACTGTCTCTCTTCCTAA 59.171 42.308 5.39 0.00 0.00 2.69
866 1458 6.829811 ACCATAGTACTGTCTCTCTTCCTAAC 59.170 42.308 5.39 0.00 0.00 2.34
867 1459 7.057894 CCATAGTACTGTCTCTCTTCCTAACT 58.942 42.308 5.39 0.00 0.00 2.24
868 1460 8.212312 CCATAGTACTGTCTCTCTTCCTAACTA 58.788 40.741 5.39 0.00 0.00 2.24
869 1461 9.268268 CATAGTACTGTCTCTCTTCCTAACTAG 57.732 40.741 5.39 0.00 0.00 2.57
870 1462 6.117488 AGTACTGTCTCTCTTCCTAACTAGC 58.883 44.000 0.00 0.00 0.00 3.42
871 1463 4.924625 ACTGTCTCTCTTCCTAACTAGCA 58.075 43.478 0.00 0.00 0.00 3.49
872 1464 5.515106 ACTGTCTCTCTTCCTAACTAGCAT 58.485 41.667 0.00 0.00 0.00 3.79
873 1465 5.359576 ACTGTCTCTCTTCCTAACTAGCATG 59.640 44.000 0.00 0.00 0.00 4.06
874 1466 5.265191 TGTCTCTCTTCCTAACTAGCATGT 58.735 41.667 0.00 0.00 0.00 3.21
875 1467 5.358442 TGTCTCTCTTCCTAACTAGCATGTC 59.642 44.000 0.00 0.00 0.00 3.06
876 1468 5.358442 GTCTCTCTTCCTAACTAGCATGTCA 59.642 44.000 0.00 0.00 0.00 3.58
877 1469 5.358442 TCTCTCTTCCTAACTAGCATGTCAC 59.642 44.000 0.00 0.00 0.00 3.67
878 1470 5.016831 TCTCTTCCTAACTAGCATGTCACA 58.983 41.667 0.00 0.00 0.00 3.58
879 1471 5.658634 TCTCTTCCTAACTAGCATGTCACAT 59.341 40.000 0.00 0.00 0.00 3.21
880 1472 5.907207 TCTTCCTAACTAGCATGTCACATC 58.093 41.667 0.00 0.00 0.00 3.06
881 1473 5.422012 TCTTCCTAACTAGCATGTCACATCA 59.578 40.000 0.00 0.00 0.00 3.07
882 1474 5.268118 TCCTAACTAGCATGTCACATCAG 57.732 43.478 0.00 0.00 0.00 2.90
883 1475 4.956075 TCCTAACTAGCATGTCACATCAGA 59.044 41.667 0.00 0.00 0.00 3.27
884 1476 5.600069 TCCTAACTAGCATGTCACATCAGAT 59.400 40.000 0.00 0.00 0.00 2.90
885 1477 6.098838 TCCTAACTAGCATGTCACATCAGATT 59.901 38.462 0.00 0.00 0.00 2.40
886 1478 6.765036 CCTAACTAGCATGTCACATCAGATTT 59.235 38.462 0.00 0.00 0.00 2.17
887 1479 7.281774 CCTAACTAGCATGTCACATCAGATTTT 59.718 37.037 0.00 0.00 0.00 1.82
888 1480 7.458409 AACTAGCATGTCACATCAGATTTTT 57.542 32.000 0.00 0.00 0.00 1.94
910 1502 7.753309 TTTTACTTAGTTGGCAATCTTAGCA 57.247 32.000 1.92 0.00 0.00 3.49
911 1503 6.737254 TTACTTAGTTGGCAATCTTAGCAC 57.263 37.500 1.92 0.00 0.00 4.40
912 1504 4.010349 ACTTAGTTGGCAATCTTAGCACC 58.990 43.478 1.92 0.00 0.00 5.01
913 1505 2.887151 AGTTGGCAATCTTAGCACCT 57.113 45.000 1.92 0.00 0.00 4.00
914 1506 2.440409 AGTTGGCAATCTTAGCACCTG 58.560 47.619 1.92 0.00 0.00 4.00
915 1507 2.162681 GTTGGCAATCTTAGCACCTGT 58.837 47.619 1.92 0.00 0.00 4.00
916 1508 3.009033 AGTTGGCAATCTTAGCACCTGTA 59.991 43.478 1.92 0.00 0.00 2.74
917 1509 3.931907 TGGCAATCTTAGCACCTGTAT 57.068 42.857 0.00 0.00 0.00 2.29
918 1510 5.104527 AGTTGGCAATCTTAGCACCTGTATA 60.105 40.000 1.92 0.00 0.00 1.47
919 1511 5.366482 TGGCAATCTTAGCACCTGTATAA 57.634 39.130 0.00 0.00 0.00 0.98
920 1512 5.368145 TGGCAATCTTAGCACCTGTATAAG 58.632 41.667 0.00 0.00 0.00 1.73
933 1525 3.885297 CCTGTATAAGGTGAAGCATTGGG 59.115 47.826 0.00 0.00 41.74 4.12
934 1526 4.385199 CCTGTATAAGGTGAAGCATTGGGA 60.385 45.833 0.00 0.00 41.74 4.37
935 1527 4.780815 TGTATAAGGTGAAGCATTGGGAG 58.219 43.478 0.00 0.00 0.00 4.30
936 1528 2.806945 TAAGGTGAAGCATTGGGAGG 57.193 50.000 0.00 0.00 0.00 4.30
937 1529 0.040204 AAGGTGAAGCATTGGGAGGG 59.960 55.000 0.00 0.00 0.00 4.30
938 1530 1.142688 AGGTGAAGCATTGGGAGGGT 61.143 55.000 0.00 0.00 0.00 4.34
939 1531 0.681243 GGTGAAGCATTGGGAGGGTC 60.681 60.000 0.00 0.00 0.00 4.46
940 1532 0.681243 GTGAAGCATTGGGAGGGTCC 60.681 60.000 0.00 0.00 35.23 4.46
949 1541 4.630184 GCATTGGGAGGGTCCTAATAAACA 60.630 45.833 4.40 0.00 44.56 2.83
951 1543 6.693045 GCATTGGGAGGGTCCTAATAAACATA 60.693 42.308 4.40 0.00 44.56 2.29
1050 1642 2.358898 GGCATTTACTCGGCATGTGATT 59.641 45.455 0.00 0.00 0.00 2.57
1067 1666 0.819582 ATTCTTGCCGGCCTTCATTG 59.180 50.000 26.77 6.02 0.00 2.82
1074 1673 2.887360 GGCCTTCATTGCATGCGT 59.113 55.556 14.09 0.67 0.00 5.24
1115 1714 0.694444 ACCACCTCCAACACTCCACT 60.694 55.000 0.00 0.00 0.00 4.00
1116 1715 0.035458 CCACCTCCAACACTCCACTC 59.965 60.000 0.00 0.00 0.00 3.51
1117 1716 1.051812 CACCTCCAACACTCCACTCT 58.948 55.000 0.00 0.00 0.00 3.24
1118 1717 2.248248 CACCTCCAACACTCCACTCTA 58.752 52.381 0.00 0.00 0.00 2.43
1119 1718 2.028930 CACCTCCAACACTCCACTCTAC 60.029 54.545 0.00 0.00 0.00 2.59
1148 1747 0.105709 TCACACTCCACTCCACTCCA 60.106 55.000 0.00 0.00 0.00 3.86
1149 1748 0.979665 CACACTCCACTCCACTCCAT 59.020 55.000 0.00 0.00 0.00 3.41
1152 1751 1.065854 CACTCCACTCCACTCCATTCC 60.066 57.143 0.00 0.00 0.00 3.01
1177 1783 1.028330 GCTAGCTGCACTGCATTCCA 61.028 55.000 7.70 0.00 42.31 3.53
1178 1784 0.731417 CTAGCTGCACTGCATTCCAC 59.269 55.000 3.64 0.00 38.13 4.02
1179 1785 0.325933 TAGCTGCACTGCATTCCACT 59.674 50.000 3.64 0.66 38.13 4.00
1180 1786 0.959372 AGCTGCACTGCATTCCACTC 60.959 55.000 3.64 0.00 38.13 3.51
1182 1788 0.803117 CTGCACTGCATTCCACTCAG 59.197 55.000 3.64 0.00 38.13 3.35
1183 1789 0.109153 TGCACTGCATTCCACTCAGT 59.891 50.000 0.00 0.00 41.29 3.41
1185 1791 2.938354 ACTGCATTCCACTCAGTGC 58.062 52.632 0.00 0.00 39.36 4.40
1304 1922 3.121030 GTACACGGGCAGCAGCAG 61.121 66.667 2.65 0.00 44.61 4.24
1378 1996 1.952102 GCAAGGCCACCATGACCATG 61.952 60.000 5.01 3.11 38.51 3.66
1408 2026 3.941657 AAGCCGCAGACGAAGGAGC 62.942 63.158 0.00 0.00 43.93 4.70
1651 2269 2.995574 AGTCCCCGAACCTCACCG 60.996 66.667 0.00 0.00 0.00 4.94
1887 2505 0.973632 ACACCTACTTCACCATGCGA 59.026 50.000 0.00 0.00 0.00 5.10
2169 3386 0.546122 GGGTGGTGCTCATGGACATA 59.454 55.000 0.00 0.00 36.16 2.29
2460 4227 3.812609 TGCACGTACTGTTTGTGATTGAT 59.187 39.130 13.99 0.00 35.66 2.57
2672 4598 2.270850 GGTGATGGCAGGCGGTTA 59.729 61.111 0.00 0.00 0.00 2.85
2689 4615 3.908904 TAGGGCAGTGGCGTACCCA 62.909 63.158 14.42 0.00 45.45 4.51
2731 4657 2.799126 TGAAGAACACAACAGTGGGT 57.201 45.000 0.00 0.00 46.01 4.51
2866 4792 5.524281 GCTAGCCGCTCCCTTATTATTAATC 59.476 44.000 2.29 0.00 35.14 1.75
2869 4795 6.174049 AGCCGCTCCCTTATTATTAATCTTC 58.826 40.000 0.00 0.00 0.00 2.87
2944 4870 7.345914 AGAGAATGGTTAATAGTAGAGCCAACT 59.654 37.037 0.00 0.00 0.00 3.16
2947 4873 4.224147 TGGTTAATAGTAGAGCCAACTGCA 59.776 41.667 0.00 0.00 44.83 4.41
2948 4874 4.571176 GGTTAATAGTAGAGCCAACTGCAC 59.429 45.833 0.00 0.00 44.83 4.57
2990 4916 0.400213 GACCACACCCACCAGAATCA 59.600 55.000 0.00 0.00 0.00 2.57
3170 5339 5.879223 TGACAAAATGGTGCAAGTTTTCAAT 59.121 32.000 0.00 0.00 0.00 2.57
3208 5377 9.770097 TGAAATAAATGAATGTAAACTTGCCAA 57.230 25.926 0.00 0.00 0.00 4.52
3224 5393 1.537202 GCCAAGCAACTTACAGTGGAG 59.463 52.381 0.00 0.00 0.00 3.86
3231 5400 3.834610 CAACTTACAGTGGAGAGGTACG 58.165 50.000 0.00 0.00 0.00 3.67
3380 5627 6.756542 AGTTTTCAAAACTATGAGGTGTTTGC 59.243 34.615 14.11 0.00 36.63 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.349022 ACTCCCTCTCTCTCAGTTTACG 58.651 50.000 0.00 0.00 0.00 3.18
99 100 9.187996 TCATATGAATAATCAAAGTTTGGCTCA 57.812 29.630 15.47 10.84 39.49 4.26
160 161 9.377312 GCCCTTTCAAATACAAATTTAATAGCA 57.623 29.630 0.00 0.00 33.45 3.49
251 252 6.790319 AGGCTCCTCTCATTTTAGGTTAAAA 58.210 36.000 0.00 0.00 41.38 1.52
271 272 3.325135 CCTCCGATCAGGTTTATTAGGCT 59.675 47.826 0.00 0.00 41.99 4.58
278 279 4.091549 ACAACTACCTCCGATCAGGTTTA 58.908 43.478 9.85 0.00 45.24 2.01
287 288 2.440409 GGTGAGTACAACTACCTCCGA 58.560 52.381 0.00 0.00 0.00 4.55
298 299 2.342279 GGTGCAGCGGTGAGTACA 59.658 61.111 20.69 3.36 0.00 2.90
437 526 8.617809 CCAAGCTTTGTAAAGTTTCACTAACTA 58.382 33.333 0.00 0.00 46.34 2.24
463 552 3.193267 TGCATATGAGGTTTGGTCAAAGC 59.807 43.478 15.31 15.31 46.00 3.51
478 567 7.072177 TCCGTTTCTTTTTAGTCTGCATATG 57.928 36.000 0.00 0.00 0.00 1.78
511 600 2.488347 GGCCTAATAAAGCCGGATGGAA 60.488 50.000 5.05 0.00 39.87 3.53
528 1084 4.709886 GTGTCACAAAAATATTAGGGGCCT 59.290 41.667 0.84 0.00 0.00 5.19
606 1191 7.916128 TGTGTCACAAAAATTATACGTTTGG 57.084 32.000 2.31 0.00 36.72 3.28
660 1252 6.375455 TGGAAAGCTCTCATTTTAGGCTAAAG 59.625 38.462 18.30 9.41 32.64 1.85
666 1258 5.048713 ACGTTTGGAAAGCTCTCATTTTAGG 60.049 40.000 0.00 0.00 0.00 2.69
667 1259 6.002062 ACGTTTGGAAAGCTCTCATTTTAG 57.998 37.500 0.00 0.00 0.00 1.85
678 1270 8.736751 TCTTTCAAATTATACGTTTGGAAAGC 57.263 30.769 17.32 0.00 34.56 3.51
679 1271 8.850452 GCTCTTTCAAATTATACGTTTGGAAAG 58.150 33.333 16.49 16.49 34.56 2.62
680 1272 8.573035 AGCTCTTTCAAATTATACGTTTGGAAA 58.427 29.630 0.00 0.00 34.56 3.13
681 1273 8.106247 AGCTCTTTCAAATTATACGTTTGGAA 57.894 30.769 0.00 0.00 37.22 3.53
682 1274 7.681939 AGCTCTTTCAAATTATACGTTTGGA 57.318 32.000 0.00 0.00 37.22 3.53
698 1290 8.850452 CAAATTATACGTTTGGAAAGCTCTTTC 58.150 33.333 12.61 12.61 46.03 2.62
699 1291 8.573035 TCAAATTATACGTTTGGAAAGCTCTTT 58.427 29.630 0.00 0.00 37.22 2.52
700 1292 8.106247 TCAAATTATACGTTTGGAAAGCTCTT 57.894 30.769 0.00 0.00 37.22 2.85
701 1293 7.681939 TCAAATTATACGTTTGGAAAGCTCT 57.318 32.000 0.00 0.00 37.22 4.09
702 1294 8.736751 TTTCAAATTATACGTTTGGAAAGCTC 57.263 30.769 0.00 0.00 37.22 4.09
703 1295 9.535878 TTTTTCAAATTATACGTTTGGAAAGCT 57.464 25.926 12.54 0.00 42.09 3.74
704 1296 9.791838 CTTTTTCAAATTATACGTTTGGAAAGC 57.208 29.630 12.54 0.00 42.09 3.51
705 1297 9.791838 GCTTTTTCAAATTATACGTTTGGAAAG 57.208 29.630 19.36 19.36 42.09 2.62
706 1298 9.535878 AGCTTTTTCAAATTATACGTTTGGAAA 57.464 25.926 10.24 10.24 40.47 3.13
707 1299 9.535878 AAGCTTTTTCAAATTATACGTTTGGAA 57.464 25.926 0.00 0.00 37.22 3.53
708 1300 9.535878 AAAGCTTTTTCAAATTATACGTTTGGA 57.464 25.926 5.69 0.00 37.22 3.53
709 1301 9.791838 GAAAGCTTTTTCAAATTATACGTTTGG 57.208 29.630 14.05 0.00 37.22 3.28
710 1302 9.791838 GGAAAGCTTTTTCAAATTATACGTTTG 57.208 29.630 14.05 0.00 37.79 2.93
711 1303 9.535878 TGGAAAGCTTTTTCAAATTATACGTTT 57.464 25.926 14.05 0.00 32.77 3.60
712 1304 9.535878 TTGGAAAGCTTTTTCAAATTATACGTT 57.464 25.926 14.05 0.00 32.77 3.99
713 1305 9.535878 TTTGGAAAGCTTTTTCAAATTATACGT 57.464 25.926 24.81 0.00 32.77 3.57
714 1306 9.791838 GTTTGGAAAGCTTTTTCAAATTATACG 57.208 29.630 28.13 0.00 31.53 3.06
715 1307 9.791838 CGTTTGGAAAGCTTTTTCAAATTATAC 57.208 29.630 28.13 20.32 31.53 1.47
716 1308 9.535878 ACGTTTGGAAAGCTTTTTCAAATTATA 57.464 25.926 28.13 14.31 31.53 0.98
717 1309 8.432110 ACGTTTGGAAAGCTTTTTCAAATTAT 57.568 26.923 28.13 19.65 31.53 1.28
718 1310 7.835634 ACGTTTGGAAAGCTTTTTCAAATTA 57.164 28.000 28.13 14.80 31.53 1.40
719 1311 6.735678 ACGTTTGGAAAGCTTTTTCAAATT 57.264 29.167 28.13 20.73 31.53 1.82
720 1312 9.535878 TTATACGTTTGGAAAGCTTTTTCAAAT 57.464 25.926 28.13 20.98 31.53 2.32
721 1313 8.928270 TTATACGTTTGGAAAGCTTTTTCAAA 57.072 26.923 24.81 24.81 32.77 2.69
722 1314 9.535878 AATTATACGTTTGGAAAGCTTTTTCAA 57.464 25.926 14.05 16.98 32.77 2.69
723 1315 9.535878 AAATTATACGTTTGGAAAGCTTTTTCA 57.464 25.926 14.05 12.09 32.77 2.69
727 1319 9.320352 ACAAAAATTATACGTTTGGAAAGCTTT 57.680 25.926 12.53 12.53 36.72 3.51
728 1320 8.760569 CACAAAAATTATACGTTTGGAAAGCTT 58.239 29.630 0.00 0.00 36.72 3.74
729 1321 7.095816 GCACAAAAATTATACGTTTGGAAAGCT 60.096 33.333 0.00 0.00 36.72 3.74
730 1322 7.007117 GCACAAAAATTATACGTTTGGAAAGC 58.993 34.615 0.00 0.00 36.72 3.51
731 1323 7.169982 TGGCACAAAAATTATACGTTTGGAAAG 59.830 33.333 0.00 0.00 36.72 2.62
732 1324 6.984474 TGGCACAAAAATTATACGTTTGGAAA 59.016 30.769 0.00 0.00 36.72 3.13
733 1325 6.513180 TGGCACAAAAATTATACGTTTGGAA 58.487 32.000 0.00 0.00 36.72 3.53
734 1326 6.085555 TGGCACAAAAATTATACGTTTGGA 57.914 33.333 0.00 0.00 36.72 3.53
742 1334 8.007788 TGCATGAAGCTTGGCACAAAAATTATA 61.008 33.333 2.10 0.00 43.15 0.98
743 1335 7.241738 TGCATGAAGCTTGGCACAAAAATTAT 61.242 34.615 2.10 0.00 43.15 1.28
744 1336 5.971846 TGCATGAAGCTTGGCACAAAAATTA 60.972 36.000 2.10 0.00 43.15 1.40
745 1337 5.222501 TGCATGAAGCTTGGCACAAAAATT 61.223 37.500 2.10 0.00 43.15 1.82
746 1338 3.744846 TGCATGAAGCTTGGCACAAAAAT 60.745 39.130 2.10 0.00 43.15 1.82
747 1339 2.419713 TGCATGAAGCTTGGCACAAAAA 60.420 40.909 2.10 0.00 43.15 1.94
748 1340 1.138464 TGCATGAAGCTTGGCACAAAA 59.862 42.857 2.10 0.00 43.15 2.44
749 1341 0.751452 TGCATGAAGCTTGGCACAAA 59.249 45.000 2.10 0.00 43.15 2.83
750 1342 0.970640 ATGCATGAAGCTTGGCACAA 59.029 45.000 16.52 0.00 43.15 3.33
751 1343 0.970640 AATGCATGAAGCTTGGCACA 59.029 45.000 16.52 3.84 45.94 4.57
752 1344 2.088950 AAATGCATGAAGCTTGGCAC 57.911 45.000 16.52 0.00 45.94 5.01
753 1345 3.957591 TTAAATGCATGAAGCTTGGCA 57.042 38.095 16.51 16.51 45.94 4.92
754 1346 6.044682 ACTAATTAAATGCATGAAGCTTGGC 58.955 36.000 2.10 5.47 45.94 4.52
755 1347 7.546667 ACAACTAATTAAATGCATGAAGCTTGG 59.453 33.333 2.10 0.00 45.94 3.61
756 1348 8.470040 ACAACTAATTAAATGCATGAAGCTTG 57.530 30.769 2.10 0.00 45.94 4.01
757 1349 9.793252 CTACAACTAATTAAATGCATGAAGCTT 57.207 29.630 0.00 0.00 45.94 3.74
758 1350 9.177608 TCTACAACTAATTAAATGCATGAAGCT 57.822 29.630 0.00 0.00 45.94 3.74
759 1351 9.226345 GTCTACAACTAATTAAATGCATGAAGC 57.774 33.333 0.00 0.00 45.96 3.86
762 1354 9.665719 TGAGTCTACAACTAATTAAATGCATGA 57.334 29.630 0.00 0.00 38.74 3.07
763 1355 9.926751 CTGAGTCTACAACTAATTAAATGCATG 57.073 33.333 0.00 0.00 38.74 4.06
764 1356 9.890629 TCTGAGTCTACAACTAATTAAATGCAT 57.109 29.630 0.00 0.00 38.74 3.96
765 1357 9.719355 TTCTGAGTCTACAACTAATTAAATGCA 57.281 29.630 0.00 0.00 38.74 3.96
774 1366 9.587772 GAAGCATAATTCTGAGTCTACAACTAA 57.412 33.333 0.00 0.00 38.74 2.24
775 1367 8.198109 GGAAGCATAATTCTGAGTCTACAACTA 58.802 37.037 0.00 0.00 38.74 2.24
776 1368 7.044798 GGAAGCATAATTCTGAGTCTACAACT 58.955 38.462 0.00 0.00 42.42 3.16
777 1369 6.818644 TGGAAGCATAATTCTGAGTCTACAAC 59.181 38.462 0.00 0.00 0.00 3.32
778 1370 6.946340 TGGAAGCATAATTCTGAGTCTACAA 58.054 36.000 0.00 0.00 0.00 2.41
779 1371 6.544928 TGGAAGCATAATTCTGAGTCTACA 57.455 37.500 0.00 0.00 0.00 2.74
797 1389 1.736032 GCACGTGTACCTAGCTGGAAG 60.736 57.143 18.38 0.00 39.71 3.46
798 1390 0.245539 GCACGTGTACCTAGCTGGAA 59.754 55.000 18.38 0.00 39.71 3.53
799 1391 0.611062 AGCACGTGTACCTAGCTGGA 60.611 55.000 18.38 0.00 39.71 3.86
800 1392 0.246635 AAGCACGTGTACCTAGCTGG 59.753 55.000 18.38 0.00 42.93 4.85
801 1393 2.163815 ACTAAGCACGTGTACCTAGCTG 59.836 50.000 18.38 0.00 35.42 4.24
802 1394 2.444421 ACTAAGCACGTGTACCTAGCT 58.556 47.619 18.38 2.53 37.08 3.32
803 1395 2.935481 ACTAAGCACGTGTACCTAGC 57.065 50.000 18.38 0.00 0.00 3.42
808 1400 5.166398 AGAAATGGTACTAAGCACGTGTAC 58.834 41.667 18.38 10.82 35.57 2.90
809 1401 5.395682 AGAAATGGTACTAAGCACGTGTA 57.604 39.130 18.38 1.22 35.57 2.90
810 1402 4.267349 AGAAATGGTACTAAGCACGTGT 57.733 40.909 18.38 0.00 35.57 4.49
811 1403 4.092968 GGAAGAAATGGTACTAAGCACGTG 59.907 45.833 12.28 12.28 35.57 4.49
812 1404 4.020485 AGGAAGAAATGGTACTAAGCACGT 60.020 41.667 0.00 0.00 35.57 4.49
813 1405 4.330074 CAGGAAGAAATGGTACTAAGCACG 59.670 45.833 0.00 0.00 35.57 5.34
814 1406 4.636206 CCAGGAAGAAATGGTACTAAGCAC 59.364 45.833 0.00 0.00 35.57 4.40
815 1407 4.324254 CCCAGGAAGAAATGGTACTAAGCA 60.324 45.833 0.00 0.00 37.55 3.91
816 1408 4.200092 CCCAGGAAGAAATGGTACTAAGC 58.800 47.826 0.00 0.00 34.58 3.09
817 1409 5.045869 TGACCCAGGAAGAAATGGTACTAAG 60.046 44.000 0.00 0.00 34.58 2.18
818 1410 4.847512 TGACCCAGGAAGAAATGGTACTAA 59.152 41.667 0.00 0.00 34.58 2.24
819 1411 4.224370 GTGACCCAGGAAGAAATGGTACTA 59.776 45.833 0.00 0.00 34.58 1.82
820 1412 3.009143 GTGACCCAGGAAGAAATGGTACT 59.991 47.826 0.00 0.00 34.58 2.73
821 1413 3.344515 GTGACCCAGGAAGAAATGGTAC 58.655 50.000 0.00 0.00 34.58 3.34
822 1414 2.307686 GGTGACCCAGGAAGAAATGGTA 59.692 50.000 0.00 0.00 34.58 3.25
823 1415 1.075536 GGTGACCCAGGAAGAAATGGT 59.924 52.381 0.00 0.00 34.58 3.55
824 1416 1.075374 TGGTGACCCAGGAAGAAATGG 59.925 52.381 0.00 0.00 35.17 3.16
825 1417 2.584835 TGGTGACCCAGGAAGAAATG 57.415 50.000 0.00 0.00 35.17 2.32
826 1418 3.852578 ACTATGGTGACCCAGGAAGAAAT 59.147 43.478 0.00 0.00 46.15 2.17
827 1419 3.256704 ACTATGGTGACCCAGGAAGAAA 58.743 45.455 0.00 0.00 46.15 2.52
828 1420 2.915869 ACTATGGTGACCCAGGAAGAA 58.084 47.619 0.00 0.00 46.15 2.52
829 1421 2.642171 ACTATGGTGACCCAGGAAGA 57.358 50.000 0.00 0.00 46.15 2.87
830 1422 3.133003 CAGTACTATGGTGACCCAGGAAG 59.867 52.174 0.00 0.00 46.15 3.46
831 1423 3.104512 CAGTACTATGGTGACCCAGGAA 58.895 50.000 0.00 0.00 46.15 3.36
832 1424 2.043939 ACAGTACTATGGTGACCCAGGA 59.956 50.000 0.00 0.00 46.15 3.86
833 1425 2.431057 GACAGTACTATGGTGACCCAGG 59.569 54.545 0.00 0.00 46.15 4.45
834 1426 3.366396 AGACAGTACTATGGTGACCCAG 58.634 50.000 0.00 0.00 46.15 4.45
836 1428 3.633065 GAGAGACAGTACTATGGTGACCC 59.367 52.174 0.00 0.00 0.00 4.46
837 1429 4.528920 AGAGAGACAGTACTATGGTGACC 58.471 47.826 0.00 0.00 0.00 4.02
838 1430 5.066764 GGAAGAGAGACAGTACTATGGTGAC 59.933 48.000 0.00 0.00 0.00 3.67
839 1431 5.044772 AGGAAGAGAGACAGTACTATGGTGA 60.045 44.000 0.00 0.00 0.00 4.02
840 1432 5.197451 AGGAAGAGAGACAGTACTATGGTG 58.803 45.833 0.00 0.00 0.00 4.17
841 1433 5.459982 AGGAAGAGAGACAGTACTATGGT 57.540 43.478 0.00 0.00 0.00 3.55
842 1434 7.057894 AGTTAGGAAGAGAGACAGTACTATGG 58.942 42.308 0.00 0.00 0.00 2.74
843 1435 9.268268 CTAGTTAGGAAGAGAGACAGTACTATG 57.732 40.741 0.00 0.00 0.00 2.23
844 1436 7.935210 GCTAGTTAGGAAGAGAGACAGTACTAT 59.065 40.741 0.00 0.00 0.00 2.12
845 1437 7.092979 TGCTAGTTAGGAAGAGAGACAGTACTA 60.093 40.741 0.00 0.00 0.00 1.82
846 1438 6.117488 GCTAGTTAGGAAGAGAGACAGTACT 58.883 44.000 0.00 0.00 0.00 2.73
847 1439 5.881443 TGCTAGTTAGGAAGAGAGACAGTAC 59.119 44.000 0.00 0.00 0.00 2.73
848 1440 6.063496 TGCTAGTTAGGAAGAGAGACAGTA 57.937 41.667 0.00 0.00 0.00 2.74
849 1441 4.924625 TGCTAGTTAGGAAGAGAGACAGT 58.075 43.478 0.00 0.00 0.00 3.55
850 1442 5.359576 ACATGCTAGTTAGGAAGAGAGACAG 59.640 44.000 0.00 0.00 0.00 3.51
851 1443 5.265191 ACATGCTAGTTAGGAAGAGAGACA 58.735 41.667 0.00 0.00 0.00 3.41
852 1444 5.358442 TGACATGCTAGTTAGGAAGAGAGAC 59.642 44.000 0.00 0.00 0.00 3.36
853 1445 5.358442 GTGACATGCTAGTTAGGAAGAGAGA 59.642 44.000 0.00 0.00 0.00 3.10
854 1446 5.126222 TGTGACATGCTAGTTAGGAAGAGAG 59.874 44.000 0.00 0.00 0.00 3.20
855 1447 5.016831 TGTGACATGCTAGTTAGGAAGAGA 58.983 41.667 0.00 0.00 0.00 3.10
856 1448 5.330455 TGTGACATGCTAGTTAGGAAGAG 57.670 43.478 0.00 0.00 0.00 2.85
857 1449 5.422012 TGATGTGACATGCTAGTTAGGAAGA 59.578 40.000 1.23 0.00 0.00 2.87
858 1450 5.664457 TGATGTGACATGCTAGTTAGGAAG 58.336 41.667 1.23 0.00 0.00 3.46
859 1451 5.422012 TCTGATGTGACATGCTAGTTAGGAA 59.578 40.000 1.23 0.00 0.00 3.36
860 1452 4.956075 TCTGATGTGACATGCTAGTTAGGA 59.044 41.667 1.23 0.00 0.00 2.94
861 1453 5.268118 TCTGATGTGACATGCTAGTTAGG 57.732 43.478 1.23 0.00 0.00 2.69
862 1454 7.783090 AAATCTGATGTGACATGCTAGTTAG 57.217 36.000 1.23 0.00 0.00 2.34
863 1455 8.565896 AAAAATCTGATGTGACATGCTAGTTA 57.434 30.769 1.23 0.00 0.00 2.24
864 1456 7.458409 AAAAATCTGATGTGACATGCTAGTT 57.542 32.000 1.23 0.00 0.00 2.24
885 1477 8.079809 GTGCTAAGATTGCCAACTAAGTAAAAA 58.920 33.333 0.00 0.00 0.00 1.94
886 1478 7.308951 GGTGCTAAGATTGCCAACTAAGTAAAA 60.309 37.037 0.00 0.00 0.00 1.52
887 1479 6.150474 GGTGCTAAGATTGCCAACTAAGTAAA 59.850 38.462 0.00 0.00 0.00 2.01
888 1480 5.646360 GGTGCTAAGATTGCCAACTAAGTAA 59.354 40.000 0.00 0.00 0.00 2.24
889 1481 5.045869 AGGTGCTAAGATTGCCAACTAAGTA 60.046 40.000 0.00 0.00 0.00 2.24
890 1482 4.010349 GGTGCTAAGATTGCCAACTAAGT 58.990 43.478 0.00 0.00 0.00 2.24
891 1483 4.095483 CAGGTGCTAAGATTGCCAACTAAG 59.905 45.833 0.00 0.00 0.00 2.18
892 1484 4.009675 CAGGTGCTAAGATTGCCAACTAA 58.990 43.478 0.00 0.00 0.00 2.24
893 1485 3.009033 ACAGGTGCTAAGATTGCCAACTA 59.991 43.478 0.00 0.00 0.00 2.24
894 1486 2.224867 ACAGGTGCTAAGATTGCCAACT 60.225 45.455 0.00 0.00 0.00 3.16
895 1487 2.162681 ACAGGTGCTAAGATTGCCAAC 58.837 47.619 0.00 0.00 0.00 3.77
896 1488 2.584835 ACAGGTGCTAAGATTGCCAA 57.415 45.000 0.00 0.00 0.00 4.52
897 1489 3.931907 ATACAGGTGCTAAGATTGCCA 57.068 42.857 0.00 0.00 0.00 4.92
898 1490 4.757149 CCTTATACAGGTGCTAAGATTGCC 59.243 45.833 5.62 0.00 37.99 4.52
899 1491 5.931441 CCTTATACAGGTGCTAAGATTGC 57.069 43.478 5.62 0.00 37.99 3.56
912 1504 4.780815 TCCCAATGCTTCACCTTATACAG 58.219 43.478 0.00 0.00 0.00 2.74
913 1505 4.385199 CCTCCCAATGCTTCACCTTATACA 60.385 45.833 0.00 0.00 0.00 2.29
914 1506 4.137543 CCTCCCAATGCTTCACCTTATAC 58.862 47.826 0.00 0.00 0.00 1.47
915 1507 3.138283 CCCTCCCAATGCTTCACCTTATA 59.862 47.826 0.00 0.00 0.00 0.98
916 1508 2.091665 CCCTCCCAATGCTTCACCTTAT 60.092 50.000 0.00 0.00 0.00 1.73
917 1509 1.284785 CCCTCCCAATGCTTCACCTTA 59.715 52.381 0.00 0.00 0.00 2.69
918 1510 0.040204 CCCTCCCAATGCTTCACCTT 59.960 55.000 0.00 0.00 0.00 3.50
919 1511 1.142688 ACCCTCCCAATGCTTCACCT 61.143 55.000 0.00 0.00 0.00 4.00
920 1512 0.681243 GACCCTCCCAATGCTTCACC 60.681 60.000 0.00 0.00 0.00 4.02
921 1513 0.681243 GGACCCTCCCAATGCTTCAC 60.681 60.000 0.00 0.00 0.00 3.18
922 1514 0.846427 AGGACCCTCCCAATGCTTCA 60.846 55.000 0.00 0.00 37.19 3.02
923 1515 1.213296 TAGGACCCTCCCAATGCTTC 58.787 55.000 0.00 0.00 37.19 3.86
924 1516 1.681229 TTAGGACCCTCCCAATGCTT 58.319 50.000 0.00 0.00 37.19 3.91
925 1517 1.912862 ATTAGGACCCTCCCAATGCT 58.087 50.000 0.00 0.00 37.19 3.79
926 1518 3.876309 TTATTAGGACCCTCCCAATGC 57.124 47.619 0.00 0.00 37.19 3.56
927 1519 5.124036 TGTTTATTAGGACCCTCCCAATG 57.876 43.478 0.00 0.00 37.19 2.82
928 1520 7.474474 TTATGTTTATTAGGACCCTCCCAAT 57.526 36.000 0.00 0.00 37.19 3.16
929 1521 6.911993 TTATGTTTATTAGGACCCTCCCAA 57.088 37.500 0.00 0.00 37.19 4.12
930 1522 6.633127 CGTTTATGTTTATTAGGACCCTCCCA 60.633 42.308 0.00 0.00 37.19 4.37
931 1523 5.761726 CGTTTATGTTTATTAGGACCCTCCC 59.238 44.000 0.00 0.00 37.19 4.30
932 1524 5.761726 CCGTTTATGTTTATTAGGACCCTCC 59.238 44.000 0.00 0.00 36.58 4.30
933 1525 6.585416 TCCGTTTATGTTTATTAGGACCCTC 58.415 40.000 0.00 0.00 0.00 4.30
934 1526 6.408891 CCTCCGTTTATGTTTATTAGGACCCT 60.409 42.308 0.00 0.00 0.00 4.34
935 1527 5.761726 CCTCCGTTTATGTTTATTAGGACCC 59.238 44.000 0.00 0.00 0.00 4.46
936 1528 6.351711 ACCTCCGTTTATGTTTATTAGGACC 58.648 40.000 0.00 0.00 0.00 4.46
937 1529 8.200120 ACTACCTCCGTTTATGTTTATTAGGAC 58.800 37.037 0.00 0.00 0.00 3.85
938 1530 8.310122 ACTACCTCCGTTTATGTTTATTAGGA 57.690 34.615 0.00 0.00 0.00 2.94
939 1531 9.468532 GTACTACCTCCGTTTATGTTTATTAGG 57.531 37.037 0.00 0.00 0.00 2.69
949 1541 6.264067 GGTGAGTATGTACTACCTCCGTTTAT 59.736 42.308 0.00 0.00 36.50 1.40
951 1543 4.400567 GGTGAGTATGTACTACCTCCGTTT 59.599 45.833 0.00 0.00 36.50 3.60
966 1558 1.079127 GTGGTGCAGCGGTGAGTAT 60.079 57.895 20.69 0.00 0.00 2.12
967 1559 2.342279 GTGGTGCAGCGGTGAGTA 59.658 61.111 20.69 0.10 0.00 2.59
1050 1642 2.342650 GCAATGAAGGCCGGCAAGA 61.343 57.895 30.85 9.15 0.00 3.02
1067 1666 1.584483 CATGGCTTTCGACGCATGC 60.584 57.895 7.91 7.91 0.00 4.06
1074 1673 3.554934 AGGATTTATGCATGGCTTTCGA 58.445 40.909 10.16 0.00 0.00 3.71
1115 1714 6.062749 GTGGAGTGTGATATAGTGGAGTAGA 58.937 44.000 0.00 0.00 0.00 2.59
1116 1715 6.065374 AGTGGAGTGTGATATAGTGGAGTAG 58.935 44.000 0.00 0.00 0.00 2.57
1117 1716 6.014771 AGTGGAGTGTGATATAGTGGAGTA 57.985 41.667 0.00 0.00 0.00 2.59
1118 1717 4.873010 AGTGGAGTGTGATATAGTGGAGT 58.127 43.478 0.00 0.00 0.00 3.85
1119 1718 4.279671 GGAGTGGAGTGTGATATAGTGGAG 59.720 50.000 0.00 0.00 0.00 3.86
1148 1747 0.907486 TGCAGCTAGCTGAGTGGAAT 59.093 50.000 41.87 5.11 46.30 3.01
1149 1748 0.036952 GTGCAGCTAGCTGAGTGGAA 60.037 55.000 41.87 19.49 46.30 3.53
1152 1751 1.360194 GCAGTGCAGCTAGCTGAGTG 61.360 60.000 41.87 34.08 46.30 3.51
1193 1811 2.616376 TGCATCGTTGTAGTTGCAACTT 59.384 40.909 35.20 19.78 44.61 2.66
1194 1812 2.217750 TGCATCGTTGTAGTTGCAACT 58.782 42.857 32.97 32.97 44.61 3.16
1195 1813 2.574322 CTGCATCGTTGTAGTTGCAAC 58.426 47.619 22.17 22.17 43.53 4.17
1196 1814 1.535028 CCTGCATCGTTGTAGTTGCAA 59.465 47.619 10.17 0.00 43.53 4.08
1199 1817 0.447801 GCCCTGCATCGTTGTAGTTG 59.552 55.000 10.17 3.26 34.08 3.16
1204 1822 2.360350 CCTGCCCTGCATCGTTGT 60.360 61.111 0.00 0.00 38.13 3.32
1378 1996 3.423154 CGGCTTCGGCTTGACCAC 61.423 66.667 0.00 0.00 41.44 4.16
1623 2241 2.735772 CGGGGACTGCTGCAGGTAT 61.736 63.158 31.00 12.65 35.51 2.73
2169 3386 3.516300 TCATGTCCAACAAGTACCCGTAT 59.484 43.478 0.00 0.00 0.00 3.06
2649 4575 3.080641 CCTGCCATCACCACTCCA 58.919 61.111 0.00 0.00 0.00 3.86
2689 4615 8.859236 TCATCTTCATCTTCTTCAACTTGAAT 57.141 30.769 4.65 0.00 35.59 2.57
2731 4657 2.435069 TCTTCCAACTTGAACGGGTACA 59.565 45.455 0.00 0.00 0.00 2.90
2866 4792 6.192234 AGTGCTGCTGAAAATATCTTGAAG 57.808 37.500 0.00 0.00 0.00 3.02
2869 4795 8.834465 ACTAATAGTGCTGCTGAAAATATCTTG 58.166 33.333 0.00 0.00 0.00 3.02
2947 4873 1.081376 GTGCTACTCGTCTGCGTGT 60.081 57.895 0.00 0.00 45.16 4.49
2948 4874 1.081442 TGTGCTACTCGTCTGCGTG 60.081 57.895 0.00 0.00 39.49 5.34
2990 4916 0.319297 AACTAACGACGAGCGGCTTT 60.319 50.000 2.97 0.00 46.49 3.51
3170 5339 7.695480 TTCATTTATTTCAATCCGTTCTCCA 57.305 32.000 0.00 0.00 0.00 3.86
3224 5393 5.473039 TGTAAGAACTTTTAGGCGTACCTC 58.527 41.667 0.00 0.00 46.34 3.85
3231 5400 5.995897 TCTTCCACTGTAAGAACTTTTAGGC 59.004 40.000 0.00 0.00 37.43 3.93
3239 5408 6.426025 ACCGTTTTATCTTCCACTGTAAGAAC 59.574 38.462 0.00 0.00 36.60 3.01
3240 5409 6.527423 ACCGTTTTATCTTCCACTGTAAGAA 58.473 36.000 0.00 0.00 36.60 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.