Multiple sequence alignment - TraesCS6A01G002200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G002200 chr6A 100.000 2388 0 0 1 2388 927272 924885 0.000000e+00 4410.0
1 TraesCS6A01G002200 chr6A 78.063 351 40 18 1103 1434 918120 918452 1.130000e-43 187.0
2 TraesCS6A01G002200 chr6A 76.471 221 33 12 864 1073 614251875 614252087 4.200000e-18 102.0
3 TraesCS6A01G002200 chr3A 90.746 670 38 10 3 651 405697651 405698317 0.000000e+00 872.0
4 TraesCS6A01G002200 chr3A 88.889 45 4 1 1030 1073 33254157 33254201 1.000000e-03 54.7
5 TraesCS6A01G002200 chr6D 85.047 749 62 23 1082 1798 1915496 1916226 0.000000e+00 717.0
6 TraesCS6A01G002200 chr6D 84.350 377 44 6 653 1029 1915009 1915370 2.920000e-94 355.0
7 TraesCS6A01G002200 chr6D 78.667 150 22 8 930 1073 469112438 469112583 9.090000e-15 91.6
8 TraesCS6A01G002200 chr6D 89.041 73 6 2 1256 1327 1948778 1948707 3.270000e-14 89.8
9 TraesCS6A01G002200 chr2D 92.571 350 17 2 1 342 228430945 228431293 5.930000e-136 494.0
10 TraesCS6A01G002200 chr2D 87.195 328 24 9 335 651 228432070 228432390 8.120000e-95 357.0
11 TraesCS6A01G002200 chr7A 89.896 386 29 4 1 376 664768945 664769330 2.760000e-134 488.0
12 TraesCS6A01G002200 chr6B 88.278 418 29 7 668 1081 4850292 4849891 1.280000e-132 483.0
13 TraesCS6A01G002200 chr6B 80.899 623 58 29 1155 1742 4849797 4849201 3.650000e-118 435.0
14 TraesCS6A01G002200 chr6B 82.677 381 40 6 653 1029 4844671 4844313 4.960000e-82 315.0
15 TraesCS6A01G002200 chr6B 83.475 236 34 3 416 651 57697680 57697910 5.170000e-52 215.0
16 TraesCS6A01G002200 chr6B 79.012 324 32 17 1128 1433 4832449 4832754 3.130000e-44 189.0
17 TraesCS6A01G002200 chr6B 76.471 221 33 11 864 1073 715337218 715337430 4.200000e-18 102.0
18 TraesCS6A01G002200 chr6B 100.000 36 0 0 1046 1081 4844275 4844240 1.530000e-07 67.6
19 TraesCS6A01G002200 chr6B 100.000 28 0 0 1051 1078 4841715 4841742 4.000000e-03 52.8
20 TraesCS6A01G002200 chr1D 91.949 236 15 3 416 651 207138959 207138728 6.360000e-86 327.0
21 TraesCS6A01G002200 chr5B 90.254 236 20 2 416 651 214141181 214140949 2.980000e-79 305.0
22 TraesCS6A01G002200 chr2B 89.831 236 20 3 416 651 800489505 800489274 1.390000e-77 300.0
23 TraesCS6A01G002200 chr2B 82.906 234 36 2 418 651 140531869 140532098 8.650000e-50 207.0
24 TraesCS6A01G002200 chr2B 83.710 221 31 3 431 651 53967512 53967297 1.120000e-48 204.0
25 TraesCS6A01G002200 chr7B 89.407 236 22 3 416 651 442537374 442537606 6.460000e-76 294.0
26 TraesCS6A01G002200 chr4D 98.361 61 1 0 339 399 175183295 175183355 9.030000e-20 108.0
27 TraesCS6A01G002200 chr3D 98.361 61 1 0 339 399 608436085 608436145 9.030000e-20 108.0
28 TraesCS6A01G002200 chr3D 98.000 50 1 0 339 388 608435527 608435576 1.180000e-13 87.9
29 TraesCS6A01G002200 chr1A 96.774 62 2 0 339 400 29153809 29153870 1.170000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G002200 chr6A 924885 927272 2387 True 4410.0 4410 100.0000 1 2388 1 chr6A.!!$R1 2387
1 TraesCS6A01G002200 chr3A 405697651 405698317 666 False 872.0 872 90.7460 3 651 1 chr3A.!!$F2 648
2 TraesCS6A01G002200 chr6D 1915009 1916226 1217 False 536.0 717 84.6985 653 1798 2 chr6D.!!$F2 1145
3 TraesCS6A01G002200 chr2D 228430945 228432390 1445 False 425.5 494 89.8830 1 651 2 chr2D.!!$F1 650
4 TraesCS6A01G002200 chr6B 4849201 4850292 1091 True 459.0 483 84.5885 668 1742 2 chr6B.!!$R2 1074

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 178 0.394565 AGCATCTCCAATAGCCGGTC 59.605 55.0 1.9 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 2936 0.107831 TGGAACGGTGGAAGGAAGTG 59.892 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 73 3.636043 CGCGAACGTGGTTGCAGT 61.636 61.111 0.00 0.00 33.53 4.40
101 110 4.025480 GGTTGTAACAAACGACGATGACTT 60.025 41.667 0.00 0.00 42.69 3.01
168 178 0.394565 AGCATCTCCAATAGCCGGTC 59.605 55.000 1.90 0.00 0.00 4.79
193 203 7.615365 TCCCAGCATATATCAAATATGTTTCCC 59.385 37.037 6.81 0.00 35.14 3.97
213 223 1.009829 GCATCCACATCTGACGGTTC 58.990 55.000 0.00 0.00 0.00 3.62
263 273 3.026694 GGTAGGACGGTGGTTATACAGT 58.973 50.000 0.00 0.00 0.00 3.55
274 284 3.760151 TGGTTATACAGTGCACTAGTCGT 59.240 43.478 21.20 15.67 0.00 4.34
275 285 4.219070 TGGTTATACAGTGCACTAGTCGTT 59.781 41.667 21.20 10.72 0.00 3.85
355 1148 1.445582 GTGGCGACCGACGAGAAAT 60.446 57.895 0.00 0.00 45.77 2.17
424 1228 4.363990 AGTGACCAGCGGCGACTG 62.364 66.667 12.98 17.38 37.42 3.51
665 1470 0.521735 GCTGCGGTAAAAAGGGAGTG 59.478 55.000 0.00 0.00 0.00 3.51
666 1471 1.880646 GCTGCGGTAAAAAGGGAGTGA 60.881 52.381 0.00 0.00 0.00 3.41
673 1478 4.577283 CGGTAAAAAGGGAGTGAAGTTTGA 59.423 41.667 0.00 0.00 0.00 2.69
767 1574 5.047660 CCACCGTATTTTGGAAATTTCTCCA 60.048 40.000 17.42 6.46 43.99 3.86
883 1692 6.208994 GGCCCTCTATATATACAGGATTACGG 59.791 46.154 14.01 0.17 0.00 4.02
889 1698 7.997223 TCTATATATACAGGATTACGGGTGGAG 59.003 40.741 0.00 0.00 0.00 3.86
913 1722 6.265422 AGGGAGAAATCAACTTGTAGTTTTGG 59.735 38.462 0.00 0.00 36.03 3.28
916 1725 8.626526 GGAGAAATCAACTTGTAGTTTTGGTTA 58.373 33.333 0.00 0.00 36.03 2.85
917 1726 9.447040 GAGAAATCAACTTGTAGTTTTGGTTAC 57.553 33.333 0.00 0.00 36.03 2.50
956 1765 7.782897 TTCTCCTGTCAATCTCTTTTCTCTA 57.217 36.000 0.00 0.00 0.00 2.43
957 1766 7.403312 TCTCCTGTCAATCTCTTTTCTCTAG 57.597 40.000 0.00 0.00 0.00 2.43
958 1767 7.178573 TCTCCTGTCAATCTCTTTTCTCTAGA 58.821 38.462 0.00 0.00 0.00 2.43
959 1768 7.671819 TCTCCTGTCAATCTCTTTTCTCTAGAA 59.328 37.037 0.00 0.00 0.00 2.10
960 1769 7.835822 TCCTGTCAATCTCTTTTCTCTAGAAG 58.164 38.462 0.00 0.00 35.21 2.85
961 1770 7.671819 TCCTGTCAATCTCTTTTCTCTAGAAGA 59.328 37.037 0.00 0.00 35.21 2.87
962 1771 8.310382 CCTGTCAATCTCTTTTCTCTAGAAGAA 58.690 37.037 0.00 0.00 42.35 2.52
963 1772 9.357652 CTGTCAATCTCTTTTCTCTAGAAGAAG 57.642 37.037 0.00 0.00 44.69 2.85
964 1773 9.083422 TGTCAATCTCTTTTCTCTAGAAGAAGA 57.917 33.333 10.14 10.14 44.69 2.87
965 1774 9.921637 GTCAATCTCTTTTCTCTAGAAGAAGAA 57.078 33.333 11.19 2.03 44.69 2.52
977 1786 5.992217 TCTAGAAGAAGAAGAAACAAGTGCC 59.008 40.000 0.00 0.00 0.00 5.01
978 1787 3.885901 AGAAGAAGAAGAAACAAGTGCCC 59.114 43.478 0.00 0.00 0.00 5.36
979 1788 2.587522 AGAAGAAGAAACAAGTGCCCC 58.412 47.619 0.00 0.00 0.00 5.80
982 1791 1.215423 AGAAGAAACAAGTGCCCCTGT 59.785 47.619 0.00 0.00 0.00 4.00
1042 1869 2.360844 TCAGTGCTCTACTTCTCCTCG 58.639 52.381 0.00 0.00 37.60 4.63
1081 1908 4.584638 ACACAATGTAAGCAGGGGATAA 57.415 40.909 0.00 0.00 0.00 1.75
1082 1909 4.270008 ACACAATGTAAGCAGGGGATAAC 58.730 43.478 0.00 0.00 0.00 1.89
1083 1910 3.312421 CACAATGTAAGCAGGGGATAACG 59.688 47.826 0.00 0.00 0.00 3.18
1115 2032 6.945938 TTCTTTTCTCGTTTTTGTCCCATA 57.054 33.333 0.00 0.00 0.00 2.74
1116 2033 6.554334 TCTTTTCTCGTTTTTGTCCCATAG 57.446 37.500 0.00 0.00 0.00 2.23
1126 2043 4.649267 TTTGTCCCATAGATGTGGTTCA 57.351 40.909 0.00 0.00 37.57 3.18
1132 2049 6.119536 GTCCCATAGATGTGGTTCATGTTTA 58.880 40.000 0.00 0.00 37.57 2.01
1134 2051 7.285401 GTCCCATAGATGTGGTTCATGTTTATT 59.715 37.037 0.00 0.00 37.57 1.40
1136 2053 8.567948 CCCATAGATGTGGTTCATGTTTATTAC 58.432 37.037 0.00 0.00 37.57 1.89
1201 2118 8.647796 TGTTATTATTCCATAGGTCGAGTCATT 58.352 33.333 0.00 0.00 0.00 2.57
1301 2218 6.926826 AGTGACGAATCAGTGTTACATAACAA 59.073 34.615 6.05 0.00 46.54 2.83
1389 2318 6.097839 CCATCTCCATTCCTGTCAAATTGAAT 59.902 38.462 0.00 0.00 0.00 2.57
1393 2322 8.431222 TCTCCATTCCTGTCAAATTGAATTTTT 58.569 29.630 0.00 0.00 0.00 1.94
1400 2329 9.781633 TCCTGTCAAATTGAATTTTTGATTGAT 57.218 25.926 0.00 0.00 43.00 2.57
1426 2355 3.724508 AATGTGTGATGTGCGGAAAAA 57.275 38.095 0.00 0.00 0.00 1.94
1486 2415 9.477484 TTGTTTTTGTTTTTCTAACAGCAGTTA 57.523 25.926 1.47 1.47 39.15 2.24
1487 2416 9.477484 TGTTTTTGTTTTTCTAACAGCAGTTAA 57.523 25.926 3.15 0.00 39.58 2.01
1556 2487 9.259015 GAATAAAAATAGACCGTCTTTTTCGTC 57.741 33.333 14.86 9.79 34.76 4.20
1563 2494 1.191647 CCGTCTTTTTCGTCGGTTGAG 59.808 52.381 0.00 0.00 38.45 3.02
1570 2515 0.108804 TTCGTCGGTTGAGGCATCTC 60.109 55.000 0.00 0.00 40.36 2.75
1634 2601 1.196581 CATCCGATGTGACAAACGCAA 59.803 47.619 9.35 2.10 42.43 4.85
1637 2604 0.721155 CGATGTGACAAACGCAACCG 60.721 55.000 0.00 0.00 42.43 4.44
1678 2650 5.187967 ACTTAGATGAGATCCCTTGTTCGTT 59.812 40.000 0.00 0.00 0.00 3.85
1682 2654 1.734465 GAGATCCCTTGTTCGTTGCTG 59.266 52.381 0.00 0.00 0.00 4.41
1694 2669 4.633565 TGTTCGTTGCTGTTATATCATGCA 59.366 37.500 0.00 0.00 0.00 3.96
1695 2670 5.296531 TGTTCGTTGCTGTTATATCATGCAT 59.703 36.000 0.00 0.00 33.50 3.96
1696 2671 5.347012 TCGTTGCTGTTATATCATGCATG 57.653 39.130 21.07 21.07 33.50 4.06
1697 2672 4.213906 TCGTTGCTGTTATATCATGCATGG 59.786 41.667 25.97 8.76 33.50 3.66
1698 2673 4.213906 CGTTGCTGTTATATCATGCATGGA 59.786 41.667 25.97 14.99 33.50 3.41
1699 2674 5.616204 CGTTGCTGTTATATCATGCATGGAG 60.616 44.000 25.97 11.40 33.50 3.86
1788 2763 1.228094 TTGACATCCTGCCGCAACA 60.228 52.632 0.00 0.00 0.00 3.33
1791 2766 1.303561 ACATCCTGCCGCAACATGT 60.304 52.632 9.97 9.97 0.00 3.21
1801 2776 3.790744 GCAACATGTGGCGAATTCA 57.209 47.368 10.02 0.00 0.00 2.57
1802 2777 2.282701 GCAACATGTGGCGAATTCAT 57.717 45.000 10.02 0.00 0.00 2.57
1803 2778 2.187707 GCAACATGTGGCGAATTCATC 58.812 47.619 10.02 0.00 0.00 2.92
1804 2779 2.159338 GCAACATGTGGCGAATTCATCT 60.159 45.455 10.02 0.00 0.00 2.90
1805 2780 3.065233 GCAACATGTGGCGAATTCATCTA 59.935 43.478 10.02 0.00 0.00 1.98
1806 2781 4.787563 GCAACATGTGGCGAATTCATCTAG 60.788 45.833 10.02 0.00 0.00 2.43
1807 2782 4.142609 ACATGTGGCGAATTCATCTAGT 57.857 40.909 6.22 0.00 0.00 2.57
1808 2783 5.276461 ACATGTGGCGAATTCATCTAGTA 57.724 39.130 6.22 0.00 0.00 1.82
1809 2784 5.858381 ACATGTGGCGAATTCATCTAGTAT 58.142 37.500 6.22 0.00 0.00 2.12
1810 2785 6.291377 ACATGTGGCGAATTCATCTAGTATT 58.709 36.000 6.22 0.00 0.00 1.89
1811 2786 6.767902 ACATGTGGCGAATTCATCTAGTATTT 59.232 34.615 6.22 0.00 0.00 1.40
1812 2787 6.844696 TGTGGCGAATTCATCTAGTATTTC 57.155 37.500 6.22 0.00 0.00 2.17
1813 2788 5.758296 TGTGGCGAATTCATCTAGTATTTCC 59.242 40.000 6.22 0.00 0.00 3.13
1814 2789 5.992217 GTGGCGAATTCATCTAGTATTTCCT 59.008 40.000 6.22 0.00 0.00 3.36
1815 2790 7.152645 GTGGCGAATTCATCTAGTATTTCCTA 58.847 38.462 6.22 0.00 0.00 2.94
1816 2791 7.819900 GTGGCGAATTCATCTAGTATTTCCTAT 59.180 37.037 6.22 0.00 0.00 2.57
1817 2792 7.819415 TGGCGAATTCATCTAGTATTTCCTATG 59.181 37.037 6.22 0.00 0.00 2.23
1818 2793 8.035394 GGCGAATTCATCTAGTATTTCCTATGA 58.965 37.037 6.22 0.00 0.00 2.15
1819 2794 9.081997 GCGAATTCATCTAGTATTTCCTATGAG 57.918 37.037 6.22 0.00 0.00 2.90
1820 2795 9.579768 CGAATTCATCTAGTATTTCCTATGAGG 57.420 37.037 6.22 0.00 36.46 3.86
1823 2798 9.607333 ATTCATCTAGTATTTCCTATGAGGACA 57.393 33.333 0.00 0.00 45.78 4.02
1824 2799 9.434275 TTCATCTAGTATTTCCTATGAGGACAA 57.566 33.333 0.00 0.00 45.78 3.18
1825 2800 9.607333 TCATCTAGTATTTCCTATGAGGACAAT 57.393 33.333 0.00 2.31 45.78 2.71
1826 2801 9.868277 CATCTAGTATTTCCTATGAGGACAATC 57.132 37.037 0.00 0.00 45.78 2.67
1827 2802 9.607333 ATCTAGTATTTCCTATGAGGACAATCA 57.393 33.333 0.00 0.00 45.78 2.57
1828 2803 9.607333 TCTAGTATTTCCTATGAGGACAATCAT 57.393 33.333 0.00 0.00 45.78 2.45
1829 2804 9.868277 CTAGTATTTCCTATGAGGACAATCATC 57.132 37.037 0.00 0.00 45.78 2.92
1830 2805 8.503428 AGTATTTCCTATGAGGACAATCATCT 57.497 34.615 0.00 0.00 45.78 2.90
1831 2806 8.592809 AGTATTTCCTATGAGGACAATCATCTC 58.407 37.037 0.00 0.00 45.78 2.75
1832 2807 6.813293 TTTCCTATGAGGACAATCATCTCA 57.187 37.500 0.00 0.00 45.78 3.27
1833 2808 6.813293 TTCCTATGAGGACAATCATCTCAA 57.187 37.500 0.00 0.00 45.78 3.02
1834 2809 6.813293 TCCTATGAGGACAATCATCTCAAA 57.187 37.500 0.00 0.00 40.06 2.69
1835 2810 7.199167 TCCTATGAGGACAATCATCTCAAAA 57.801 36.000 0.00 0.00 40.06 2.44
1836 2811 7.278135 TCCTATGAGGACAATCATCTCAAAAG 58.722 38.462 0.00 0.00 40.06 2.27
1837 2812 5.831702 ATGAGGACAATCATCTCAAAAGC 57.168 39.130 0.00 0.00 40.37 3.51
1838 2813 4.914983 TGAGGACAATCATCTCAAAAGCT 58.085 39.130 0.00 0.00 34.97 3.74
1839 2814 6.053632 TGAGGACAATCATCTCAAAAGCTA 57.946 37.500 0.00 0.00 34.97 3.32
1840 2815 6.475504 TGAGGACAATCATCTCAAAAGCTAA 58.524 36.000 0.00 0.00 34.97 3.09
1841 2816 6.596888 TGAGGACAATCATCTCAAAAGCTAAG 59.403 38.462 0.00 0.00 34.97 2.18
1842 2817 6.715280 AGGACAATCATCTCAAAAGCTAAGA 58.285 36.000 0.00 0.00 0.00 2.10
1843 2818 7.344913 AGGACAATCATCTCAAAAGCTAAGAT 58.655 34.615 0.00 0.00 0.00 2.40
1844 2819 7.833183 AGGACAATCATCTCAAAAGCTAAGATT 59.167 33.333 0.00 0.00 0.00 2.40
1845 2820 8.127954 GGACAATCATCTCAAAAGCTAAGATTC 58.872 37.037 0.00 0.00 0.00 2.52
1846 2821 8.571461 ACAATCATCTCAAAAGCTAAGATTCA 57.429 30.769 0.00 0.00 0.00 2.57
1847 2822 8.675504 ACAATCATCTCAAAAGCTAAGATTCAG 58.324 33.333 0.00 0.00 0.00 3.02
1848 2823 8.890718 CAATCATCTCAAAAGCTAAGATTCAGA 58.109 33.333 0.00 0.00 0.00 3.27
1849 2824 7.840342 TCATCTCAAAAGCTAAGATTCAGAC 57.160 36.000 0.00 0.00 0.00 3.51
1850 2825 7.619050 TCATCTCAAAAGCTAAGATTCAGACT 58.381 34.615 0.00 0.00 0.00 3.24
1851 2826 8.753133 TCATCTCAAAAGCTAAGATTCAGACTA 58.247 33.333 0.00 0.00 0.00 2.59
1852 2827 9.033481 CATCTCAAAAGCTAAGATTCAGACTAG 57.967 37.037 0.00 0.00 0.00 2.57
1853 2828 8.128322 TCTCAAAAGCTAAGATTCAGACTAGT 57.872 34.615 0.00 0.00 0.00 2.57
1854 2829 8.031864 TCTCAAAAGCTAAGATTCAGACTAGTG 58.968 37.037 0.00 0.00 0.00 2.74
1855 2830 7.099764 TCAAAAGCTAAGATTCAGACTAGTGG 58.900 38.462 0.00 0.00 0.00 4.00
1856 2831 5.606348 AAGCTAAGATTCAGACTAGTGGG 57.394 43.478 0.00 0.00 0.00 4.61
1857 2832 3.964031 AGCTAAGATTCAGACTAGTGGGG 59.036 47.826 0.00 0.00 0.00 4.96
1858 2833 3.707102 GCTAAGATTCAGACTAGTGGGGT 59.293 47.826 0.00 0.00 0.00 4.95
1859 2834 4.442192 GCTAAGATTCAGACTAGTGGGGTG 60.442 50.000 0.00 0.00 0.00 4.61
1860 2835 3.191888 AGATTCAGACTAGTGGGGTGT 57.808 47.619 0.00 0.00 0.00 4.16
1861 2836 3.100671 AGATTCAGACTAGTGGGGTGTC 58.899 50.000 0.00 0.00 0.00 3.67
1862 2837 2.696526 TTCAGACTAGTGGGGTGTCT 57.303 50.000 0.00 0.00 41.15 3.41
1863 2838 3.820195 TTCAGACTAGTGGGGTGTCTA 57.180 47.619 0.00 0.00 38.80 2.59
1864 2839 3.083122 TCAGACTAGTGGGGTGTCTAC 57.917 52.381 0.00 0.00 38.80 2.59
1865 2840 2.648304 TCAGACTAGTGGGGTGTCTACT 59.352 50.000 0.00 0.00 38.80 2.57
1866 2841 3.075582 TCAGACTAGTGGGGTGTCTACTT 59.924 47.826 0.00 0.00 38.80 2.24
1867 2842 4.290459 TCAGACTAGTGGGGTGTCTACTTA 59.710 45.833 0.00 0.00 38.80 2.24
1868 2843 5.044328 TCAGACTAGTGGGGTGTCTACTTAT 60.044 44.000 0.00 0.00 38.80 1.73
1869 2844 5.657302 CAGACTAGTGGGGTGTCTACTTATT 59.343 44.000 0.00 0.00 38.80 1.40
1870 2845 6.154706 CAGACTAGTGGGGTGTCTACTTATTT 59.845 42.308 0.00 0.00 38.80 1.40
1871 2846 6.729569 AGACTAGTGGGGTGTCTACTTATTTT 59.270 38.462 0.00 0.00 39.02 1.82
1872 2847 7.237055 AGACTAGTGGGGTGTCTACTTATTTTT 59.763 37.037 0.00 0.00 39.02 1.94
1873 2848 7.166167 ACTAGTGGGGTGTCTACTTATTTTTG 58.834 38.462 0.00 0.00 0.00 2.44
1874 2849 6.195600 AGTGGGGTGTCTACTTATTTTTGA 57.804 37.500 0.00 0.00 0.00 2.69
1875 2850 6.607019 AGTGGGGTGTCTACTTATTTTTGAA 58.393 36.000 0.00 0.00 0.00 2.69
1876 2851 7.064229 AGTGGGGTGTCTACTTATTTTTGAAA 58.936 34.615 0.00 0.00 0.00 2.69
1877 2852 7.562088 AGTGGGGTGTCTACTTATTTTTGAAAA 59.438 33.333 0.00 0.00 0.00 2.29
1878 2853 8.364894 GTGGGGTGTCTACTTATTTTTGAAAAT 58.635 33.333 6.88 6.88 41.24 1.82
1879 2854 8.929487 TGGGGTGTCTACTTATTTTTGAAAATT 58.071 29.630 6.98 0.00 39.24 1.82
1880 2855 9.203421 GGGGTGTCTACTTATTTTTGAAAATTG 57.797 33.333 6.98 4.38 39.24 2.32
1881 2856 9.203421 GGGTGTCTACTTATTTTTGAAAATTGG 57.797 33.333 6.98 4.10 39.24 3.16
1882 2857 9.758651 GGTGTCTACTTATTTTTGAAAATTGGT 57.241 29.630 6.98 8.66 39.24 3.67
1888 2863 7.795859 ACTTATTTTTGAAAATTGGTGATGCG 58.204 30.769 6.98 0.00 39.24 4.73
1889 2864 7.440856 ACTTATTTTTGAAAATTGGTGATGCGT 59.559 29.630 6.98 0.00 39.24 5.24
1890 2865 5.649602 TTTTTGAAAATTGGTGATGCGTC 57.350 34.783 0.00 0.00 0.00 5.19
1891 2866 4.582701 TTTGAAAATTGGTGATGCGTCT 57.417 36.364 7.58 0.00 0.00 4.18
1892 2867 3.829886 TGAAAATTGGTGATGCGTCTC 57.170 42.857 7.58 3.21 0.00 3.36
1893 2868 2.487762 TGAAAATTGGTGATGCGTCTCC 59.512 45.455 18.28 18.28 38.27 3.71
1894 2869 2.496899 AAATTGGTGATGCGTCTCCT 57.503 45.000 23.76 5.87 38.53 3.69
1895 2870 2.496899 AATTGGTGATGCGTCTCCTT 57.503 45.000 23.76 11.07 38.53 3.36
1896 2871 3.627395 AATTGGTGATGCGTCTCCTTA 57.373 42.857 23.76 14.26 38.53 2.69
1897 2872 2.672961 TTGGTGATGCGTCTCCTTAG 57.327 50.000 23.76 0.00 38.53 2.18
1898 2873 1.557099 TGGTGATGCGTCTCCTTAGT 58.443 50.000 23.76 0.00 38.53 2.24
1899 2874 1.899814 TGGTGATGCGTCTCCTTAGTT 59.100 47.619 23.76 0.00 38.53 2.24
1900 2875 2.094182 TGGTGATGCGTCTCCTTAGTTC 60.094 50.000 23.76 0.94 38.53 3.01
1901 2876 2.094182 GGTGATGCGTCTCCTTAGTTCA 60.094 50.000 17.91 0.00 35.57 3.18
1902 2877 3.430929 GGTGATGCGTCTCCTTAGTTCAT 60.431 47.826 17.91 0.00 35.57 2.57
1903 2878 3.799420 GTGATGCGTCTCCTTAGTTCATC 59.201 47.826 7.58 0.00 0.00 2.92
1904 2879 3.701542 TGATGCGTCTCCTTAGTTCATCT 59.298 43.478 7.58 0.00 32.46 2.90
1905 2880 4.160439 TGATGCGTCTCCTTAGTTCATCTT 59.840 41.667 7.58 0.00 32.46 2.40
1906 2881 5.359860 TGATGCGTCTCCTTAGTTCATCTTA 59.640 40.000 7.58 0.00 32.46 2.10
1907 2882 5.654603 TGCGTCTCCTTAGTTCATCTTAA 57.345 39.130 0.00 0.00 0.00 1.85
1908 2883 5.651530 TGCGTCTCCTTAGTTCATCTTAAG 58.348 41.667 0.00 0.00 0.00 1.85
1909 2884 4.504826 GCGTCTCCTTAGTTCATCTTAAGC 59.495 45.833 0.00 0.00 0.00 3.09
1910 2885 5.651530 CGTCTCCTTAGTTCATCTTAAGCA 58.348 41.667 0.00 0.00 0.00 3.91
1911 2886 6.276847 CGTCTCCTTAGTTCATCTTAAGCAT 58.723 40.000 0.00 0.00 0.00 3.79
1912 2887 6.758886 CGTCTCCTTAGTTCATCTTAAGCATT 59.241 38.462 0.00 0.00 0.00 3.56
1913 2888 7.921214 CGTCTCCTTAGTTCATCTTAAGCATTA 59.079 37.037 0.00 0.00 0.00 1.90
1914 2889 9.601217 GTCTCCTTAGTTCATCTTAAGCATTAA 57.399 33.333 0.00 0.00 38.42 1.40
1917 2892 9.959721 TCCTTAGTTCATCTTAAGCATTAAACT 57.040 29.630 0.00 5.86 40.54 2.66
1923 2898 9.657121 GTTCATCTTAAGCATTAAACTAGATGC 57.343 33.333 6.10 6.10 46.88 3.91
1929 2904 3.866496 GCATTAAACTAGATGCGTCTGC 58.134 45.455 18.98 7.68 39.23 4.26
1930 2905 3.557595 GCATTAAACTAGATGCGTCTGCT 59.442 43.478 18.98 0.00 43.34 4.24
1931 2906 4.551603 GCATTAAACTAGATGCGTCTGCTG 60.552 45.833 18.98 10.66 43.34 4.41
1932 2907 2.015736 AAACTAGATGCGTCTGCTGG 57.984 50.000 18.98 8.30 43.34 4.85
1933 2908 0.176680 AACTAGATGCGTCTGCTGGG 59.823 55.000 18.98 6.02 43.34 4.45
1934 2909 0.972983 ACTAGATGCGTCTGCTGGGT 60.973 55.000 18.98 6.60 43.34 4.51
1935 2910 0.176680 CTAGATGCGTCTGCTGGGTT 59.823 55.000 18.98 0.00 43.34 4.11
1936 2911 1.409064 CTAGATGCGTCTGCTGGGTTA 59.591 52.381 18.98 0.00 43.34 2.85
1937 2912 0.833287 AGATGCGTCTGCTGGGTTAT 59.167 50.000 7.89 0.00 43.34 1.89
1938 2913 1.210478 AGATGCGTCTGCTGGGTTATT 59.790 47.619 7.89 0.00 43.34 1.40
1939 2914 1.599542 GATGCGTCTGCTGGGTTATTC 59.400 52.381 0.00 0.00 43.34 1.75
1940 2915 0.739462 TGCGTCTGCTGGGTTATTCG 60.739 55.000 0.00 0.00 43.34 3.34
1941 2916 0.739813 GCGTCTGCTGGGTTATTCGT 60.740 55.000 0.00 0.00 38.39 3.85
1942 2917 1.278238 CGTCTGCTGGGTTATTCGTC 58.722 55.000 0.00 0.00 0.00 4.20
1943 2918 1.278238 GTCTGCTGGGTTATTCGTCG 58.722 55.000 0.00 0.00 0.00 5.12
1944 2919 0.174845 TCTGCTGGGTTATTCGTCGG 59.825 55.000 0.00 0.00 0.00 4.79
1945 2920 0.174845 CTGCTGGGTTATTCGTCGGA 59.825 55.000 0.00 0.00 0.00 4.55
1946 2921 0.108520 TGCTGGGTTATTCGTCGGAC 60.109 55.000 0.00 0.00 0.00 4.79
1947 2922 0.175073 GCTGGGTTATTCGTCGGACT 59.825 55.000 6.57 0.00 0.00 3.85
1948 2923 1.406539 GCTGGGTTATTCGTCGGACTA 59.593 52.381 6.57 0.00 0.00 2.59
1949 2924 2.797439 GCTGGGTTATTCGTCGGACTAC 60.797 54.545 6.57 0.00 0.00 2.73
1950 2925 1.750778 TGGGTTATTCGTCGGACTACC 59.249 52.381 6.57 5.80 0.00 3.18
1960 2935 3.204418 GGACTACCGCCGCTAGTT 58.796 61.111 0.00 0.00 0.00 2.24
1961 2936 1.065436 GGACTACCGCCGCTAGTTC 59.935 63.158 0.00 0.00 0.00 3.01
1962 2937 1.660560 GGACTACCGCCGCTAGTTCA 61.661 60.000 0.00 0.00 0.00 3.18
1963 2938 0.525029 GACTACCGCCGCTAGTTCAC 60.525 60.000 0.00 0.00 0.00 3.18
1964 2939 0.964358 ACTACCGCCGCTAGTTCACT 60.964 55.000 0.00 0.00 0.00 3.41
1965 2940 0.172803 CTACCGCCGCTAGTTCACTT 59.827 55.000 0.00 0.00 0.00 3.16
1966 2941 0.171903 TACCGCCGCTAGTTCACTTC 59.828 55.000 0.00 0.00 0.00 3.01
1967 2942 1.810030 CCGCCGCTAGTTCACTTCC 60.810 63.158 0.00 0.00 0.00 3.46
1968 2943 1.215647 CGCCGCTAGTTCACTTCCT 59.784 57.895 0.00 0.00 0.00 3.36
1969 2944 0.389948 CGCCGCTAGTTCACTTCCTT 60.390 55.000 0.00 0.00 0.00 3.36
1970 2945 1.360820 GCCGCTAGTTCACTTCCTTC 58.639 55.000 0.00 0.00 0.00 3.46
1971 2946 2.007547 GCCGCTAGTTCACTTCCTTCC 61.008 57.143 0.00 0.00 0.00 3.46
1972 2947 1.275291 CCGCTAGTTCACTTCCTTCCA 59.725 52.381 0.00 0.00 0.00 3.53
1973 2948 2.338500 CGCTAGTTCACTTCCTTCCAC 58.662 52.381 0.00 0.00 0.00 4.02
1974 2949 2.701107 GCTAGTTCACTTCCTTCCACC 58.299 52.381 0.00 0.00 0.00 4.61
1975 2950 2.931320 GCTAGTTCACTTCCTTCCACCG 60.931 54.545 0.00 0.00 0.00 4.94
1976 2951 1.129058 AGTTCACTTCCTTCCACCGT 58.871 50.000 0.00 0.00 0.00 4.83
1977 2952 1.489230 AGTTCACTTCCTTCCACCGTT 59.511 47.619 0.00 0.00 0.00 4.44
1978 2953 1.871676 GTTCACTTCCTTCCACCGTTC 59.128 52.381 0.00 0.00 0.00 3.95
1979 2954 0.395312 TCACTTCCTTCCACCGTTCC 59.605 55.000 0.00 0.00 0.00 3.62
1980 2955 0.107831 CACTTCCTTCCACCGTTCCA 59.892 55.000 0.00 0.00 0.00 3.53
1981 2956 1.064825 ACTTCCTTCCACCGTTCCAT 58.935 50.000 0.00 0.00 0.00 3.41
1982 2957 1.423921 ACTTCCTTCCACCGTTCCATT 59.576 47.619 0.00 0.00 0.00 3.16
1983 2958 2.158519 ACTTCCTTCCACCGTTCCATTT 60.159 45.455 0.00 0.00 0.00 2.32
1984 2959 2.668144 TCCTTCCACCGTTCCATTTT 57.332 45.000 0.00 0.00 0.00 1.82
1985 2960 2.952116 TCCTTCCACCGTTCCATTTTT 58.048 42.857 0.00 0.00 0.00 1.94
2034 3009 6.917217 TTTTTCATGTTTTTACCTTGCAGG 57.083 33.333 0.00 1.16 42.49 4.85
2045 3020 2.749280 CCTTGCAGGTTTGGGATTTC 57.251 50.000 0.00 0.00 0.00 2.17
2046 3021 2.250924 CCTTGCAGGTTTGGGATTTCT 58.749 47.619 0.00 0.00 0.00 2.52
2047 3022 2.232208 CCTTGCAGGTTTGGGATTTCTC 59.768 50.000 0.00 0.00 0.00 2.87
2048 3023 1.923356 TGCAGGTTTGGGATTTCTCC 58.077 50.000 0.00 0.00 41.26 3.71
2049 3024 1.428912 TGCAGGTTTGGGATTTCTCCT 59.571 47.619 0.00 0.00 41.74 3.69
2050 3025 2.647299 TGCAGGTTTGGGATTTCTCCTA 59.353 45.455 0.00 0.00 41.74 2.94
2051 3026 3.282885 GCAGGTTTGGGATTTCTCCTAG 58.717 50.000 0.00 0.00 41.74 3.02
2052 3027 3.308473 GCAGGTTTGGGATTTCTCCTAGT 60.308 47.826 0.00 0.00 41.74 2.57
2053 3028 4.811063 GCAGGTTTGGGATTTCTCCTAGTT 60.811 45.833 0.00 0.00 41.74 2.24
2054 3029 5.325239 CAGGTTTGGGATTTCTCCTAGTTT 58.675 41.667 0.00 0.00 41.74 2.66
2055 3030 5.775195 CAGGTTTGGGATTTCTCCTAGTTTT 59.225 40.000 0.00 0.00 41.74 2.43
2056 3031 6.010850 AGGTTTGGGATTTCTCCTAGTTTTC 58.989 40.000 0.00 0.00 41.74 2.29
2057 3032 6.010850 GGTTTGGGATTTCTCCTAGTTTTCT 58.989 40.000 0.00 0.00 41.74 2.52
2058 3033 7.018249 AGGTTTGGGATTTCTCCTAGTTTTCTA 59.982 37.037 0.00 0.00 41.74 2.10
2059 3034 7.120873 GGTTTGGGATTTCTCCTAGTTTTCTAC 59.879 40.741 0.00 0.00 41.74 2.59
2060 3035 7.569599 TTGGGATTTCTCCTAGTTTTCTACT 57.430 36.000 0.00 0.00 41.74 2.57
2061 3036 7.569599 TGGGATTTCTCCTAGTTTTCTACTT 57.430 36.000 0.00 0.00 41.74 2.24
2062 3037 8.674925 TGGGATTTCTCCTAGTTTTCTACTTA 57.325 34.615 0.00 0.00 41.74 2.24
2063 3038 9.108111 TGGGATTTCTCCTAGTTTTCTACTTAA 57.892 33.333 0.00 0.00 41.74 1.85
2064 3039 9.955102 GGGATTTCTCCTAGTTTTCTACTTAAA 57.045 33.333 0.00 0.00 41.74 1.52
2178 3153 9.616156 TGGTTAACAGTTTTTAATAGACACTGA 57.384 29.630 8.10 0.00 38.59 3.41
2195 3170 8.856490 AGACACTGAACATTTTTCAAATACAC 57.144 30.769 0.00 0.00 0.00 2.90
2196 3171 8.686334 AGACACTGAACATTTTTCAAATACACT 58.314 29.630 0.00 0.00 0.00 3.55
2197 3172 8.633075 ACACTGAACATTTTTCAAATACACTG 57.367 30.769 0.00 0.00 0.00 3.66
2198 3173 8.465999 ACACTGAACATTTTTCAAATACACTGA 58.534 29.630 0.00 0.00 0.00 3.41
2199 3174 9.299963 CACTGAACATTTTTCAAATACACTGAA 57.700 29.630 0.00 0.00 0.00 3.02
2200 3175 9.301153 ACTGAACATTTTTCAAATACACTGAAC 57.699 29.630 0.00 0.00 32.61 3.18
2201 3176 9.520204 CTGAACATTTTTCAAATACACTGAACT 57.480 29.630 0.00 0.00 32.61 3.01
2202 3177 9.868277 TGAACATTTTTCAAATACACTGAACTT 57.132 25.926 0.00 0.00 32.61 2.66
2254 3229 9.533253 AACTTCTAACAAAAATCCAACAATCAG 57.467 29.630 0.00 0.00 0.00 2.90
2255 3230 8.695456 ACTTCTAACAAAAATCCAACAATCAGT 58.305 29.630 0.00 0.00 0.00 3.41
2256 3231 9.533253 CTTCTAACAAAAATCCAACAATCAGTT 57.467 29.630 0.00 0.00 42.42 3.16
2257 3232 9.883142 TTCTAACAAAAATCCAACAATCAGTTT 57.117 25.926 0.00 0.00 38.74 2.66
2258 3233 9.883142 TCTAACAAAAATCCAACAATCAGTTTT 57.117 25.926 0.00 0.00 38.74 2.43
2287 3262 7.803279 AAGATCGACTAGAAAACCAAAAAGT 57.197 32.000 0.00 0.00 0.00 2.66
2288 3263 7.190920 AGATCGACTAGAAAACCAAAAAGTG 57.809 36.000 0.00 0.00 0.00 3.16
2289 3264 6.990349 AGATCGACTAGAAAACCAAAAAGTGA 59.010 34.615 0.00 0.00 0.00 3.41
2290 3265 6.988622 TCGACTAGAAAACCAAAAAGTGAA 57.011 33.333 0.00 0.00 0.00 3.18
2291 3266 7.380431 TCGACTAGAAAACCAAAAAGTGAAA 57.620 32.000 0.00 0.00 0.00 2.69
2292 3267 7.818642 TCGACTAGAAAACCAAAAAGTGAAAA 58.181 30.769 0.00 0.00 0.00 2.29
2293 3268 7.966204 TCGACTAGAAAACCAAAAAGTGAAAAG 59.034 33.333 0.00 0.00 0.00 2.27
2294 3269 7.253651 CGACTAGAAAACCAAAAAGTGAAAAGC 60.254 37.037 0.00 0.00 0.00 3.51
2295 3270 7.382898 ACTAGAAAACCAAAAAGTGAAAAGCA 58.617 30.769 0.00 0.00 0.00 3.91
2296 3271 6.726258 AGAAAACCAAAAAGTGAAAAGCAG 57.274 33.333 0.00 0.00 0.00 4.24
2297 3272 6.463360 AGAAAACCAAAAAGTGAAAAGCAGA 58.537 32.000 0.00 0.00 0.00 4.26
2298 3273 6.591448 AGAAAACCAAAAAGTGAAAAGCAGAG 59.409 34.615 0.00 0.00 0.00 3.35
2299 3274 3.785486 ACCAAAAAGTGAAAAGCAGAGC 58.215 40.909 0.00 0.00 0.00 4.09
2300 3275 3.195396 ACCAAAAAGTGAAAAGCAGAGCA 59.805 39.130 0.00 0.00 0.00 4.26
2301 3276 4.183101 CCAAAAAGTGAAAAGCAGAGCAA 58.817 39.130 0.00 0.00 0.00 3.91
2302 3277 4.630940 CCAAAAAGTGAAAAGCAGAGCAAA 59.369 37.500 0.00 0.00 0.00 3.68
2303 3278 5.446340 CCAAAAAGTGAAAAGCAGAGCAAAC 60.446 40.000 0.00 0.00 0.00 2.93
2304 3279 4.725790 AAAGTGAAAAGCAGAGCAAACT 57.274 36.364 0.00 0.00 0.00 2.66
2305 3280 5.835113 AAAGTGAAAAGCAGAGCAAACTA 57.165 34.783 0.00 0.00 0.00 2.24
2306 3281 6.396829 AAAGTGAAAAGCAGAGCAAACTAT 57.603 33.333 0.00 0.00 0.00 2.12
2307 3282 6.396829 AAGTGAAAAGCAGAGCAAACTATT 57.603 33.333 0.00 0.00 0.00 1.73
2308 3283 6.396829 AGTGAAAAGCAGAGCAAACTATTT 57.603 33.333 0.00 0.00 0.00 1.40
2309 3284 6.442112 AGTGAAAAGCAGAGCAAACTATTTC 58.558 36.000 0.00 0.00 0.00 2.17
2310 3285 6.039717 AGTGAAAAGCAGAGCAAACTATTTCA 59.960 34.615 0.00 0.00 0.00 2.69
2311 3286 6.361748 GTGAAAAGCAGAGCAAACTATTTCAG 59.638 38.462 0.00 0.00 0.00 3.02
2312 3287 6.262944 TGAAAAGCAGAGCAAACTATTTCAGA 59.737 34.615 0.00 0.00 0.00 3.27
2313 3288 5.876612 AAGCAGAGCAAACTATTTCAGAG 57.123 39.130 0.00 0.00 0.00 3.35
2314 3289 4.904241 AGCAGAGCAAACTATTTCAGAGT 58.096 39.130 0.00 0.00 0.00 3.24
2315 3290 4.694509 AGCAGAGCAAACTATTTCAGAGTG 59.305 41.667 0.00 0.00 0.00 3.51
2316 3291 4.142730 GCAGAGCAAACTATTTCAGAGTGG 60.143 45.833 0.00 0.00 0.00 4.00
2317 3292 5.240891 CAGAGCAAACTATTTCAGAGTGGA 58.759 41.667 0.00 0.00 0.00 4.02
2318 3293 5.121454 CAGAGCAAACTATTTCAGAGTGGAC 59.879 44.000 0.00 0.00 0.00 4.02
2319 3294 5.012561 AGAGCAAACTATTTCAGAGTGGACT 59.987 40.000 0.00 0.00 0.00 3.85
2320 3295 4.999950 AGCAAACTATTTCAGAGTGGACTG 59.000 41.667 0.00 0.00 39.02 3.51
2321 3296 4.154918 GCAAACTATTTCAGAGTGGACTGG 59.845 45.833 0.00 0.00 38.31 4.00
2322 3297 3.618690 ACTATTTCAGAGTGGACTGGC 57.381 47.619 0.00 0.00 38.31 4.85
2323 3298 2.237392 ACTATTTCAGAGTGGACTGGCC 59.763 50.000 0.00 0.00 38.31 5.36
2324 3299 0.329596 ATTTCAGAGTGGACTGGCCC 59.670 55.000 0.00 0.00 38.31 5.80
2325 3300 1.059584 TTTCAGAGTGGACTGGCCCA 61.060 55.000 0.00 0.00 38.31 5.36
2326 3301 0.842030 TTCAGAGTGGACTGGCCCAT 60.842 55.000 0.00 0.00 38.66 4.00
2327 3302 1.222936 CAGAGTGGACTGGCCCATC 59.777 63.158 0.00 0.00 38.66 3.51
2328 3303 1.229625 AGAGTGGACTGGCCCATCA 60.230 57.895 0.00 0.00 38.66 3.07
2329 3304 1.222936 GAGTGGACTGGCCCATCAG 59.777 63.158 0.00 0.00 38.66 2.90
2330 3305 2.439156 GTGGACTGGCCCATCAGC 60.439 66.667 0.00 0.00 38.66 4.26
2331 3306 2.934932 TGGACTGGCCCATCAGCA 60.935 61.111 0.00 0.00 38.26 4.41
2332 3307 2.356278 GGACTGGCCCATCAGCAA 59.644 61.111 0.00 0.00 38.26 3.91
2333 3308 1.304381 GGACTGGCCCATCAGCAAA 60.304 57.895 0.00 0.00 38.26 3.68
2334 3309 0.685458 GGACTGGCCCATCAGCAAAT 60.685 55.000 0.00 0.00 38.26 2.32
2335 3310 1.188863 GACTGGCCCATCAGCAAATT 58.811 50.000 0.00 0.00 38.26 1.82
2336 3311 2.378038 GACTGGCCCATCAGCAAATTA 58.622 47.619 0.00 0.00 38.26 1.40
2337 3312 2.961062 GACTGGCCCATCAGCAAATTAT 59.039 45.455 0.00 0.00 38.26 1.28
2338 3313 3.377573 ACTGGCCCATCAGCAAATTATT 58.622 40.909 0.00 0.00 38.26 1.40
2339 3314 3.776417 ACTGGCCCATCAGCAAATTATTT 59.224 39.130 0.00 0.00 38.26 1.40
2340 3315 4.141869 ACTGGCCCATCAGCAAATTATTTC 60.142 41.667 0.00 0.00 38.26 2.17
2341 3316 3.773667 TGGCCCATCAGCAAATTATTTCA 59.226 39.130 0.00 0.00 0.00 2.69
2342 3317 4.141892 TGGCCCATCAGCAAATTATTTCAG 60.142 41.667 0.00 0.00 0.00 3.02
2343 3318 4.374399 GCCCATCAGCAAATTATTTCAGG 58.626 43.478 0.00 0.00 0.00 3.86
2344 3319 4.141869 GCCCATCAGCAAATTATTTCAGGT 60.142 41.667 0.00 0.00 0.00 4.00
2345 3320 5.353938 CCCATCAGCAAATTATTTCAGGTG 58.646 41.667 2.18 2.18 0.00 4.00
2346 3321 5.127519 CCCATCAGCAAATTATTTCAGGTGA 59.872 40.000 10.71 10.71 40.43 4.02
2347 3322 6.270815 CCATCAGCAAATTATTTCAGGTGAG 58.729 40.000 12.85 7.37 39.65 3.51
2348 3323 5.902613 TCAGCAAATTATTTCAGGTGAGG 57.097 39.130 6.01 0.00 33.40 3.86
2349 3324 4.158394 TCAGCAAATTATTTCAGGTGAGGC 59.842 41.667 6.01 0.00 33.40 4.70
2350 3325 3.448660 AGCAAATTATTTCAGGTGAGGCC 59.551 43.478 0.00 0.00 37.58 5.19
2352 3327 4.440663 GCAAATTATTTCAGGTGAGGCCTC 60.441 45.833 26.78 26.78 46.96 4.70
2353 3328 2.691409 TTATTTCAGGTGAGGCCTCG 57.309 50.000 27.43 13.45 46.96 4.63
2354 3329 1.568504 TATTTCAGGTGAGGCCTCGT 58.431 50.000 27.43 12.18 46.96 4.18
2355 3330 0.250513 ATTTCAGGTGAGGCCTCGTC 59.749 55.000 27.43 21.35 46.96 4.20
2356 3331 0.832135 TTTCAGGTGAGGCCTCGTCT 60.832 55.000 27.43 22.55 46.96 4.18
2357 3332 1.251527 TTCAGGTGAGGCCTCGTCTC 61.252 60.000 27.43 16.58 46.96 3.36
2358 3333 2.752238 AGGTGAGGCCTCGTCTCG 60.752 66.667 27.43 0.00 46.96 4.04
2359 3334 3.827898 GGTGAGGCCTCGTCTCGG 61.828 72.222 27.43 0.00 37.04 4.63
2360 3335 3.063084 GTGAGGCCTCGTCTCGGT 61.063 66.667 27.43 0.00 37.04 4.69
2361 3336 3.062466 TGAGGCCTCGTCTCGGTG 61.062 66.667 27.43 0.00 37.04 4.94
2362 3337 4.500116 GAGGCCTCGTCTCGGTGC 62.500 72.222 19.06 0.00 0.00 5.01
2378 3353 3.426568 GCACCGTTGCCTGAGAGC 61.427 66.667 0.00 0.00 43.66 4.09
2379 3354 2.743928 CACCGTTGCCTGAGAGCC 60.744 66.667 0.00 0.00 0.00 4.70
2380 3355 2.925170 ACCGTTGCCTGAGAGCCT 60.925 61.111 0.00 0.00 0.00 4.58
2381 3356 2.125350 CCGTTGCCTGAGAGCCTC 60.125 66.667 0.00 0.00 0.00 4.70
2382 3357 2.654079 CCGTTGCCTGAGAGCCTCT 61.654 63.158 0.00 0.00 0.00 3.69
2383 3358 1.153667 CGTTGCCTGAGAGCCTCTC 60.154 63.158 14.98 14.98 43.65 3.20
2384 3359 1.153667 GTTGCCTGAGAGCCTCTCG 60.154 63.158 16.60 11.08 46.25 4.04
2385 3360 1.607756 TTGCCTGAGAGCCTCTCGT 60.608 57.895 16.60 0.00 46.25 4.18
2386 3361 1.599606 TTGCCTGAGAGCCTCTCGTC 61.600 60.000 16.60 8.63 46.25 4.20
2387 3362 3.106552 CCTGAGAGCCTCTCGTCG 58.893 66.667 16.60 7.70 46.25 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 110 3.633094 GAGCTGCAGCCGAAGACGA 62.633 63.158 34.39 0.00 43.38 4.20
168 178 7.415541 CGGGAAACATATTTGATATATGCTGGG 60.416 40.741 3.29 0.00 35.88 4.45
193 203 0.740868 AACCGTCAGATGTGGATGCG 60.741 55.000 0.00 0.00 0.00 4.73
246 256 1.066716 TGCACTGTATAACCACCGTCC 60.067 52.381 0.00 0.00 0.00 4.79
263 273 1.372499 GGCGACAACGACTAGTGCA 60.372 57.895 0.00 0.00 45.04 4.57
288 298 1.498865 CTGCGCGCCGGAAGATTATT 61.499 55.000 30.77 0.00 0.00 1.40
289 299 1.956170 CTGCGCGCCGGAAGATTAT 60.956 57.895 30.77 0.00 0.00 1.28
355 1148 2.731571 GGTCAGCGCCTCCCATACA 61.732 63.158 2.29 0.00 0.00 2.29
398 1191 2.320587 GCTGGTCACTGCCACTTCG 61.321 63.158 0.00 0.00 35.73 3.79
424 1228 1.635663 CGTTTGCCCTCACCATCGAC 61.636 60.000 0.00 0.00 0.00 4.20
429 1233 2.429930 CCTCGTTTGCCCTCACCA 59.570 61.111 0.00 0.00 0.00 4.17
533 1338 1.134401 CAGCGATTGTCACCCTACCAT 60.134 52.381 0.00 0.00 0.00 3.55
536 1341 1.090052 GCCAGCGATTGTCACCCTAC 61.090 60.000 0.00 0.00 0.00 3.18
612 1417 3.059099 CCGGCCCAAACTTTGCAT 58.941 55.556 0.00 0.00 0.00 3.96
613 1418 3.922640 GCCGGCCCAAACTTTGCA 61.923 61.111 18.11 0.00 0.00 4.08
651 1456 6.459670 TTCAAACTTCACTCCCTTTTTACC 57.540 37.500 0.00 0.00 0.00 2.85
657 1462 4.770010 TGTGTTTTCAAACTTCACTCCCTT 59.230 37.500 4.14 0.00 39.59 3.95
658 1463 4.340617 TGTGTTTTCAAACTTCACTCCCT 58.659 39.130 4.14 0.00 39.59 4.20
673 1478 8.526147 CCATCCTTCTGATTTTAGATGTGTTTT 58.474 33.333 0.00 0.00 31.32 2.43
709 1516 5.130292 AGCTGATTGTCAAGTTTGGATTG 57.870 39.130 0.00 0.00 0.00 2.67
883 1692 3.084786 CAAGTTGATTTCTCCCTCCACC 58.915 50.000 0.00 0.00 0.00 4.61
889 1698 6.040504 ACCAAAACTACAAGTTGATTTCTCCC 59.959 38.462 10.54 0.00 38.66 4.30
916 1725 8.321353 TGACAGGAGAATATTTATGTGTTCTGT 58.679 33.333 0.00 0.00 31.51 3.41
917 1726 8.722480 TGACAGGAGAATATTTATGTGTTCTG 57.278 34.615 0.00 0.00 31.51 3.02
956 1765 3.885901 GGGCACTTGTTTCTTCTTCTTCT 59.114 43.478 0.00 0.00 0.00 2.85
957 1766 3.004839 GGGGCACTTGTTTCTTCTTCTTC 59.995 47.826 0.00 0.00 0.00 2.87
958 1767 2.959030 GGGGCACTTGTTTCTTCTTCTT 59.041 45.455 0.00 0.00 0.00 2.52
959 1768 2.175715 AGGGGCACTTGTTTCTTCTTCT 59.824 45.455 0.00 0.00 0.00 2.85
960 1769 2.294512 CAGGGGCACTTGTTTCTTCTTC 59.705 50.000 0.00 0.00 0.00 2.87
961 1770 2.310538 CAGGGGCACTTGTTTCTTCTT 58.689 47.619 0.00 0.00 0.00 2.52
962 1771 1.215423 ACAGGGGCACTTGTTTCTTCT 59.785 47.619 0.00 0.00 0.00 2.85
963 1772 1.692411 ACAGGGGCACTTGTTTCTTC 58.308 50.000 0.00 0.00 0.00 2.87
964 1773 1.756538 CAACAGGGGCACTTGTTTCTT 59.243 47.619 14.63 0.00 34.91 2.52
965 1774 1.402787 CAACAGGGGCACTTGTTTCT 58.597 50.000 14.63 0.00 34.91 2.52
977 1786 4.576053 TCTTGATAATTCGATGCAACAGGG 59.424 41.667 0.00 0.00 0.00 4.45
978 1787 5.739752 TCTTGATAATTCGATGCAACAGG 57.260 39.130 0.00 0.00 0.00 4.00
979 1788 6.140786 CCATCTTGATAATTCGATGCAACAG 58.859 40.000 0.00 0.00 33.64 3.16
982 1791 4.022935 GCCCATCTTGATAATTCGATGCAA 60.023 41.667 0.00 0.00 33.64 4.08
1042 1869 3.251571 GTGTAGTAGTAGCAAGGCACAC 58.748 50.000 0.00 0.00 0.00 3.82
1081 1908 4.430908 ACGAGAAAAGAAAAGACAGTCGT 58.569 39.130 0.00 0.00 33.54 4.34
1082 1909 5.391060 AACGAGAAAAGAAAAGACAGTCG 57.609 39.130 0.00 0.00 0.00 4.18
1083 1910 7.537649 ACAAAAACGAGAAAAGAAAAGACAGTC 59.462 33.333 0.00 0.00 0.00 3.51
1115 2032 8.862325 TTGAGTAATAAACATGAACCACATCT 57.138 30.769 0.00 0.00 37.07 2.90
1116 2033 9.722056 GATTGAGTAATAAACATGAACCACATC 57.278 33.333 0.00 0.00 37.07 3.06
1172 2089 8.423906 ACTCGACCTATGGAATAATAACAGAT 57.576 34.615 0.00 0.00 0.00 2.90
1173 2090 7.504574 TGACTCGACCTATGGAATAATAACAGA 59.495 37.037 0.00 0.00 0.00 3.41
1174 2091 7.658261 TGACTCGACCTATGGAATAATAACAG 58.342 38.462 0.00 0.00 0.00 3.16
1175 2092 7.591421 TGACTCGACCTATGGAATAATAACA 57.409 36.000 0.00 0.00 0.00 2.41
1176 2093 8.926710 CAATGACTCGACCTATGGAATAATAAC 58.073 37.037 0.00 0.00 0.00 1.89
1177 2094 8.866093 TCAATGACTCGACCTATGGAATAATAA 58.134 33.333 0.00 0.00 0.00 1.40
1178 2095 8.417273 TCAATGACTCGACCTATGGAATAATA 57.583 34.615 0.00 0.00 0.00 0.98
1179 2096 7.303182 TCAATGACTCGACCTATGGAATAAT 57.697 36.000 0.00 0.00 0.00 1.28
1201 2118 3.897505 TCTTCTCCTTATCGATGCCATCA 59.102 43.478 8.54 0.00 0.00 3.07
1343 2269 1.212195 GGTAGCTAAAGGAGGGGTTGG 59.788 57.143 0.00 0.00 0.00 3.77
1393 2322 7.703197 GCACATCACACATTATTTCATCAATCA 59.297 33.333 0.00 0.00 0.00 2.57
1400 2329 4.006319 TCCGCACATCACACATTATTTCA 58.994 39.130 0.00 0.00 0.00 2.69
1455 2384 9.439537 GCTGTTAGAAAAACAAAAACAAAAACA 57.560 25.926 0.00 0.00 30.30 2.83
1456 2385 9.439537 TGCTGTTAGAAAAACAAAAACAAAAAC 57.560 25.926 0.00 0.00 30.30 2.43
1458 2387 8.831550 ACTGCTGTTAGAAAAACAAAAACAAAA 58.168 25.926 0.00 0.00 30.30 2.44
1460 2389 7.954788 ACTGCTGTTAGAAAAACAAAAACAA 57.045 28.000 0.00 0.00 30.30 2.83
1461 2390 7.954788 AACTGCTGTTAGAAAAACAAAAACA 57.045 28.000 7.26 0.00 34.15 2.83
1468 2397 9.821662 ACGATAATTAACTGCTGTTAGAAAAAC 57.178 29.630 14.75 7.19 39.49 2.43
1488 2417 8.842280 CCCAAAGCTATACCAATAAAACGATAA 58.158 33.333 0.00 0.00 0.00 1.75
1489 2418 7.040961 GCCCAAAGCTATACCAATAAAACGATA 60.041 37.037 0.00 0.00 38.99 2.92
1490 2419 6.238925 GCCCAAAGCTATACCAATAAAACGAT 60.239 38.462 0.00 0.00 38.99 3.73
1556 2487 0.250234 TTCTGGAGATGCCTCAACCG 59.750 55.000 0.00 0.00 41.20 4.44
1563 2494 2.435805 TCCTGTGTATTCTGGAGATGCC 59.564 50.000 0.00 0.00 32.92 4.40
1570 2515 9.956720 GAATAATGAAAATCCTGTGTATTCTGG 57.043 33.333 0.00 0.00 0.00 3.86
1604 2571 5.496556 TGTCACATCGGATGGAACTAAATT 58.503 37.500 21.19 0.00 33.60 1.82
1610 2577 2.159707 CGTTTGTCACATCGGATGGAAC 60.160 50.000 21.19 17.41 33.60 3.62
1634 2601 2.927856 TCAGGCATCCACCACGGT 60.928 61.111 0.00 0.00 35.57 4.83
1637 2604 1.741770 GTCGTCAGGCATCCACCAC 60.742 63.158 0.00 0.00 0.00 4.16
1641 2608 1.847328 TCTAAGTCGTCAGGCATCCA 58.153 50.000 0.00 0.00 0.00 3.41
1644 2611 3.291584 TCTCATCTAAGTCGTCAGGCAT 58.708 45.455 0.00 0.00 0.00 4.40
1645 2612 2.723273 TCTCATCTAAGTCGTCAGGCA 58.277 47.619 0.00 0.00 0.00 4.75
1646 2613 3.305064 GGATCTCATCTAAGTCGTCAGGC 60.305 52.174 0.00 0.00 0.00 4.85
1678 2650 5.231702 TCTCCATGCATGATATAACAGCA 57.768 39.130 28.31 8.69 39.79 4.41
1682 2654 5.821470 CCTCCATCTCCATGCATGATATAAC 59.179 44.000 28.31 0.00 0.00 1.89
1694 2669 3.897657 AATGCATTCCTCCATCTCCAT 57.102 42.857 5.99 0.00 0.00 3.41
1695 2670 3.675348 AAATGCATTCCTCCATCTCCA 57.325 42.857 13.38 0.00 0.00 3.86
1696 2671 4.403432 TGAAAAATGCATTCCTCCATCTCC 59.597 41.667 13.38 0.00 0.00 3.71
1697 2672 5.587388 TGAAAAATGCATTCCTCCATCTC 57.413 39.130 13.38 1.94 0.00 2.75
1698 2673 6.168389 GTTTGAAAAATGCATTCCTCCATCT 58.832 36.000 13.38 0.00 0.00 2.90
1699 2674 5.933463 TGTTTGAAAAATGCATTCCTCCATC 59.067 36.000 13.38 5.88 0.00 3.51
1765 2740 0.391661 GCGGCAGGATGTCAAGAGAA 60.392 55.000 0.00 0.00 44.43 2.87
1775 2750 2.048023 CCACATGTTGCGGCAGGAT 61.048 57.895 1.67 0.00 0.00 3.24
1788 2763 6.428159 GGAAATACTAGATGAATTCGCCACAT 59.572 38.462 0.00 0.00 0.00 3.21
1791 2766 6.174720 AGGAAATACTAGATGAATTCGCCA 57.825 37.500 0.00 0.00 0.00 5.69
1794 2769 9.579768 CCTCATAGGAAATACTAGATGAATTCG 57.420 37.037 0.00 0.00 37.67 3.34
1811 2786 6.813293 TTTGAGATGATTGTCCTCATAGGA 57.187 37.500 0.00 0.00 43.43 2.94
1812 2787 6.017275 GCTTTTGAGATGATTGTCCTCATAGG 60.017 42.308 0.00 0.00 36.01 2.57
1813 2788 6.766944 AGCTTTTGAGATGATTGTCCTCATAG 59.233 38.462 0.00 0.00 36.01 2.23
1814 2789 6.656902 AGCTTTTGAGATGATTGTCCTCATA 58.343 36.000 0.00 0.00 36.01 2.15
1815 2790 5.507637 AGCTTTTGAGATGATTGTCCTCAT 58.492 37.500 0.00 0.00 38.57 2.90
1816 2791 4.914983 AGCTTTTGAGATGATTGTCCTCA 58.085 39.130 0.00 0.00 35.38 3.86
1817 2792 6.820656 TCTTAGCTTTTGAGATGATTGTCCTC 59.179 38.462 0.00 0.00 0.00 3.71
1818 2793 6.715280 TCTTAGCTTTTGAGATGATTGTCCT 58.285 36.000 0.00 0.00 0.00 3.85
1819 2794 6.992063 TCTTAGCTTTTGAGATGATTGTCC 57.008 37.500 0.00 0.00 0.00 4.02
1820 2795 8.671921 TGAATCTTAGCTTTTGAGATGATTGTC 58.328 33.333 0.00 0.00 32.85 3.18
1821 2796 8.571461 TGAATCTTAGCTTTTGAGATGATTGT 57.429 30.769 0.00 0.00 32.85 2.71
1822 2797 8.890718 TCTGAATCTTAGCTTTTGAGATGATTG 58.109 33.333 0.00 0.00 32.85 2.67
1823 2798 8.891720 GTCTGAATCTTAGCTTTTGAGATGATT 58.108 33.333 0.00 0.00 32.85 2.57
1824 2799 8.266473 AGTCTGAATCTTAGCTTTTGAGATGAT 58.734 33.333 0.00 0.00 32.85 2.45
1825 2800 7.619050 AGTCTGAATCTTAGCTTTTGAGATGA 58.381 34.615 0.00 0.00 32.85 2.92
1826 2801 7.846644 AGTCTGAATCTTAGCTTTTGAGATG 57.153 36.000 0.00 0.00 32.85 2.90
1827 2802 8.757877 ACTAGTCTGAATCTTAGCTTTTGAGAT 58.242 33.333 0.00 0.00 33.85 2.75
1828 2803 8.031864 CACTAGTCTGAATCTTAGCTTTTGAGA 58.968 37.037 0.00 0.00 0.00 3.27
1829 2804 7.277539 CCACTAGTCTGAATCTTAGCTTTTGAG 59.722 40.741 0.00 0.00 0.00 3.02
1830 2805 7.099764 CCACTAGTCTGAATCTTAGCTTTTGA 58.900 38.462 0.00 0.00 0.00 2.69
1831 2806 6.314896 CCCACTAGTCTGAATCTTAGCTTTTG 59.685 42.308 0.00 0.00 0.00 2.44
1832 2807 6.410540 CCCACTAGTCTGAATCTTAGCTTTT 58.589 40.000 0.00 0.00 0.00 2.27
1833 2808 5.104735 CCCCACTAGTCTGAATCTTAGCTTT 60.105 44.000 0.00 0.00 0.00 3.51
1834 2809 4.407296 CCCCACTAGTCTGAATCTTAGCTT 59.593 45.833 0.00 0.00 0.00 3.74
1835 2810 3.964031 CCCCACTAGTCTGAATCTTAGCT 59.036 47.826 0.00 0.00 0.00 3.32
1836 2811 3.707102 ACCCCACTAGTCTGAATCTTAGC 59.293 47.826 0.00 0.00 0.00 3.09
1837 2812 4.712337 ACACCCCACTAGTCTGAATCTTAG 59.288 45.833 0.00 0.00 0.00 2.18
1838 2813 4.684724 ACACCCCACTAGTCTGAATCTTA 58.315 43.478 0.00 0.00 0.00 2.10
1839 2814 3.515901 GACACCCCACTAGTCTGAATCTT 59.484 47.826 0.00 0.00 0.00 2.40
1840 2815 3.100671 GACACCCCACTAGTCTGAATCT 58.899 50.000 0.00 0.00 0.00 2.40
1841 2816 3.100671 AGACACCCCACTAGTCTGAATC 58.899 50.000 0.00 0.00 40.83 2.52
1842 2817 3.191888 AGACACCCCACTAGTCTGAAT 57.808 47.619 0.00 0.00 40.83 2.57
1843 2818 2.696526 AGACACCCCACTAGTCTGAA 57.303 50.000 0.00 0.00 40.83 3.02
1844 2819 2.648304 AGTAGACACCCCACTAGTCTGA 59.352 50.000 0.00 0.00 42.21 3.27
1845 2820 3.088789 AGTAGACACCCCACTAGTCTG 57.911 52.381 0.00 0.00 42.21 3.51
1846 2821 3.829728 AAGTAGACACCCCACTAGTCT 57.170 47.619 0.00 0.00 44.25 3.24
1847 2822 6.541934 AAATAAGTAGACACCCCACTAGTC 57.458 41.667 0.00 0.00 0.00 2.59
1848 2823 6.947376 AAAATAAGTAGACACCCCACTAGT 57.053 37.500 0.00 0.00 0.00 2.57
1849 2824 7.391620 TCAAAAATAAGTAGACACCCCACTAG 58.608 38.462 0.00 0.00 0.00 2.57
1850 2825 7.319052 TCAAAAATAAGTAGACACCCCACTA 57.681 36.000 0.00 0.00 0.00 2.74
1851 2826 6.195600 TCAAAAATAAGTAGACACCCCACT 57.804 37.500 0.00 0.00 0.00 4.00
1852 2827 6.887626 TTCAAAAATAAGTAGACACCCCAC 57.112 37.500 0.00 0.00 0.00 4.61
1853 2828 7.899648 TTTTCAAAAATAAGTAGACACCCCA 57.100 32.000 0.00 0.00 0.00 4.96
1854 2829 9.203421 CAATTTTCAAAAATAAGTAGACACCCC 57.797 33.333 1.36 0.00 37.62 4.95
1855 2830 9.203421 CCAATTTTCAAAAATAAGTAGACACCC 57.797 33.333 1.36 0.00 37.62 4.61
1856 2831 9.758651 ACCAATTTTCAAAAATAAGTAGACACC 57.241 29.630 1.36 0.00 37.62 4.16
1862 2837 8.920665 CGCATCACCAATTTTCAAAAATAAGTA 58.079 29.630 1.36 0.00 37.62 2.24
1863 2838 7.440856 ACGCATCACCAATTTTCAAAAATAAGT 59.559 29.630 1.36 0.51 37.62 2.24
1864 2839 7.795859 ACGCATCACCAATTTTCAAAAATAAG 58.204 30.769 1.36 0.00 37.62 1.73
1865 2840 7.655328 AGACGCATCACCAATTTTCAAAAATAA 59.345 29.630 1.36 0.00 37.62 1.40
1866 2841 7.151308 AGACGCATCACCAATTTTCAAAAATA 58.849 30.769 1.36 0.00 37.62 1.40
1867 2842 5.990996 AGACGCATCACCAATTTTCAAAAAT 59.009 32.000 0.00 0.00 40.15 1.82
1868 2843 5.355596 AGACGCATCACCAATTTTCAAAAA 58.644 33.333 0.00 0.00 0.00 1.94
1869 2844 4.942852 AGACGCATCACCAATTTTCAAAA 58.057 34.783 0.00 0.00 0.00 2.44
1870 2845 4.545610 GAGACGCATCACCAATTTTCAAA 58.454 39.130 0.00 0.00 0.00 2.69
1871 2846 3.057596 GGAGACGCATCACCAATTTTCAA 60.058 43.478 0.00 0.00 35.74 2.69
1872 2847 2.487762 GGAGACGCATCACCAATTTTCA 59.512 45.455 0.00 0.00 35.74 2.69
1873 2848 2.749621 AGGAGACGCATCACCAATTTTC 59.250 45.455 0.00 0.00 38.02 2.29
1874 2849 2.795329 AGGAGACGCATCACCAATTTT 58.205 42.857 0.00 0.00 38.02 1.82
1875 2850 2.496899 AGGAGACGCATCACCAATTT 57.503 45.000 0.00 0.00 38.02 1.82
1876 2851 2.496899 AAGGAGACGCATCACCAATT 57.503 45.000 0.00 0.00 38.02 2.32
1877 2852 2.501723 ACTAAGGAGACGCATCACCAAT 59.498 45.455 0.00 0.00 38.02 3.16
1878 2853 1.899814 ACTAAGGAGACGCATCACCAA 59.100 47.619 0.00 0.00 38.02 3.67
1879 2854 1.557099 ACTAAGGAGACGCATCACCA 58.443 50.000 0.00 0.00 38.02 4.17
1880 2855 2.094182 TGAACTAAGGAGACGCATCACC 60.094 50.000 0.00 0.00 35.90 4.02
1881 2856 3.232213 TGAACTAAGGAGACGCATCAC 57.768 47.619 0.00 0.00 0.00 3.06
1882 2857 3.701542 AGATGAACTAAGGAGACGCATCA 59.298 43.478 0.00 0.00 34.00 3.07
1883 2858 4.314740 AGATGAACTAAGGAGACGCATC 57.685 45.455 0.00 0.00 32.88 3.91
1884 2859 4.744795 AAGATGAACTAAGGAGACGCAT 57.255 40.909 0.00 0.00 0.00 4.73
1885 2860 5.651530 CTTAAGATGAACTAAGGAGACGCA 58.348 41.667 0.00 0.00 0.00 5.24
1886 2861 4.504826 GCTTAAGATGAACTAAGGAGACGC 59.495 45.833 6.67 0.00 0.00 5.19
1887 2862 5.651530 TGCTTAAGATGAACTAAGGAGACG 58.348 41.667 6.67 0.00 0.00 4.18
1888 2863 9.601217 TTAATGCTTAAGATGAACTAAGGAGAC 57.399 33.333 6.67 0.00 0.00 3.36
1891 2866 9.959721 AGTTTAATGCTTAAGATGAACTAAGGA 57.040 29.630 6.67 0.00 0.00 3.36
1897 2872 9.657121 GCATCTAGTTTAATGCTTAAGATGAAC 57.343 33.333 6.67 4.99 43.87 3.18
1898 2873 8.551205 CGCATCTAGTTTAATGCTTAAGATGAA 58.449 33.333 6.67 0.00 44.81 2.57
1899 2874 7.710907 ACGCATCTAGTTTAATGCTTAAGATGA 59.289 33.333 6.67 0.00 44.81 2.92
1900 2875 7.855545 ACGCATCTAGTTTAATGCTTAAGATG 58.144 34.615 6.67 0.00 44.81 2.90
1901 2876 7.928706 AGACGCATCTAGTTTAATGCTTAAGAT 59.071 33.333 6.67 0.00 44.81 2.40
1902 2877 7.222805 CAGACGCATCTAGTTTAATGCTTAAGA 59.777 37.037 6.67 0.00 44.81 2.10
1903 2878 7.340699 CAGACGCATCTAGTTTAATGCTTAAG 58.659 38.462 11.17 0.00 44.81 1.85
1904 2879 6.238103 GCAGACGCATCTAGTTTAATGCTTAA 60.238 38.462 11.17 0.00 44.81 1.85
1905 2880 5.234329 GCAGACGCATCTAGTTTAATGCTTA 59.766 40.000 11.17 0.00 44.81 3.09
1906 2881 4.034510 GCAGACGCATCTAGTTTAATGCTT 59.965 41.667 11.17 3.34 44.81 3.91
1907 2882 3.557595 GCAGACGCATCTAGTTTAATGCT 59.442 43.478 11.17 0.96 44.81 3.79
1908 2883 3.557595 AGCAGACGCATCTAGTTTAATGC 59.442 43.478 4.44 4.44 43.81 3.56
1909 2884 4.025396 CCAGCAGACGCATCTAGTTTAATG 60.025 45.833 0.00 0.00 42.27 1.90
1910 2885 4.122776 CCAGCAGACGCATCTAGTTTAAT 58.877 43.478 0.00 0.00 42.27 1.40
1911 2886 3.521560 CCAGCAGACGCATCTAGTTTAA 58.478 45.455 0.00 0.00 42.27 1.52
1912 2887 2.159099 CCCAGCAGACGCATCTAGTTTA 60.159 50.000 0.00 0.00 42.27 2.01
1913 2888 1.406069 CCCAGCAGACGCATCTAGTTT 60.406 52.381 0.00 0.00 42.27 2.66
1914 2889 0.176680 CCCAGCAGACGCATCTAGTT 59.823 55.000 0.00 0.00 42.27 2.24
1915 2890 0.972983 ACCCAGCAGACGCATCTAGT 60.973 55.000 0.00 0.00 42.27 2.57
1916 2891 0.176680 AACCCAGCAGACGCATCTAG 59.823 55.000 0.00 0.00 42.27 2.43
1917 2892 1.480789 TAACCCAGCAGACGCATCTA 58.519 50.000 0.00 0.00 42.27 1.98
1918 2893 0.833287 ATAACCCAGCAGACGCATCT 59.167 50.000 0.00 0.00 42.27 2.90
1919 2894 1.599542 GAATAACCCAGCAGACGCATC 59.400 52.381 0.00 0.00 42.27 3.91
1920 2895 1.668419 GAATAACCCAGCAGACGCAT 58.332 50.000 0.00 0.00 42.27 4.73
1921 2896 0.739462 CGAATAACCCAGCAGACGCA 60.739 55.000 0.00 0.00 42.27 5.24
1922 2897 0.739813 ACGAATAACCCAGCAGACGC 60.740 55.000 0.00 0.00 38.99 5.19
1923 2898 1.278238 GACGAATAACCCAGCAGACG 58.722 55.000 0.00 0.00 0.00 4.18
1924 2899 1.278238 CGACGAATAACCCAGCAGAC 58.722 55.000 0.00 0.00 0.00 3.51
1925 2900 0.174845 CCGACGAATAACCCAGCAGA 59.825 55.000 0.00 0.00 0.00 4.26
1926 2901 0.174845 TCCGACGAATAACCCAGCAG 59.825 55.000 0.00 0.00 0.00 4.24
1927 2902 0.108520 GTCCGACGAATAACCCAGCA 60.109 55.000 0.00 0.00 0.00 4.41
1928 2903 0.175073 AGTCCGACGAATAACCCAGC 59.825 55.000 0.00 0.00 0.00 4.85
1929 2904 2.223665 GGTAGTCCGACGAATAACCCAG 60.224 54.545 0.00 0.00 0.00 4.45
1930 2905 1.750778 GGTAGTCCGACGAATAACCCA 59.249 52.381 0.00 0.00 0.00 4.51
1931 2906 2.498807 GGTAGTCCGACGAATAACCC 57.501 55.000 0.00 0.00 0.00 4.11
1943 2918 1.065436 GAACTAGCGGCGGTAGTCC 59.935 63.158 40.75 31.24 44.55 3.85
1944 2919 0.525029 GTGAACTAGCGGCGGTAGTC 60.525 60.000 40.75 32.74 44.55 2.59
1945 2920 0.964358 AGTGAACTAGCGGCGGTAGT 60.964 55.000 37.42 37.42 46.80 2.73
1946 2921 0.172803 AAGTGAACTAGCGGCGGTAG 59.827 55.000 36.16 36.16 39.25 3.18
1947 2922 0.171903 GAAGTGAACTAGCGGCGGTA 59.828 55.000 18.54 18.54 0.00 4.02
1948 2923 1.080025 GAAGTGAACTAGCGGCGGT 60.080 57.895 18.21 18.21 0.00 5.68
1949 2924 1.810030 GGAAGTGAACTAGCGGCGG 60.810 63.158 9.78 0.00 0.00 6.13
1950 2925 0.389948 AAGGAAGTGAACTAGCGGCG 60.390 55.000 0.51 0.51 0.00 6.46
1951 2926 1.360820 GAAGGAAGTGAACTAGCGGC 58.639 55.000 0.00 0.00 0.00 6.53
1952 2927 1.275291 TGGAAGGAAGTGAACTAGCGG 59.725 52.381 0.00 0.00 0.00 5.52
1953 2928 2.338500 GTGGAAGGAAGTGAACTAGCG 58.662 52.381 0.00 0.00 0.00 4.26
1954 2929 2.701107 GGTGGAAGGAAGTGAACTAGC 58.299 52.381 0.00 0.00 0.00 3.42
1955 2930 2.299297 ACGGTGGAAGGAAGTGAACTAG 59.701 50.000 0.00 0.00 0.00 2.57
1956 2931 2.322658 ACGGTGGAAGGAAGTGAACTA 58.677 47.619 0.00 0.00 0.00 2.24
1957 2932 1.129058 ACGGTGGAAGGAAGTGAACT 58.871 50.000 0.00 0.00 0.00 3.01
1958 2933 1.871676 GAACGGTGGAAGGAAGTGAAC 59.128 52.381 0.00 0.00 0.00 3.18
1959 2934 1.202722 GGAACGGTGGAAGGAAGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
1960 2935 0.395312 GGAACGGTGGAAGGAAGTGA 59.605 55.000 0.00 0.00 0.00 3.41
1961 2936 0.107831 TGGAACGGTGGAAGGAAGTG 59.892 55.000 0.00 0.00 0.00 3.16
1962 2937 1.064825 ATGGAACGGTGGAAGGAAGT 58.935 50.000 0.00 0.00 0.00 3.01
1963 2938 2.200373 AATGGAACGGTGGAAGGAAG 57.800 50.000 0.00 0.00 0.00 3.46
1964 2939 2.668144 AAATGGAACGGTGGAAGGAA 57.332 45.000 0.00 0.00 0.00 3.36
1965 2940 2.668144 AAAATGGAACGGTGGAAGGA 57.332 45.000 0.00 0.00 0.00 3.36
2027 3002 2.232208 GGAGAAATCCCAAACCTGCAAG 59.768 50.000 0.00 0.00 0.00 4.01
2028 3003 2.158325 AGGAGAAATCCCAAACCTGCAA 60.158 45.455 0.00 0.00 0.00 4.08
2029 3004 1.428912 AGGAGAAATCCCAAACCTGCA 59.571 47.619 0.00 0.00 0.00 4.41
2030 3005 2.222227 AGGAGAAATCCCAAACCTGC 57.778 50.000 0.00 0.00 0.00 4.85
2031 3006 4.576330 ACTAGGAGAAATCCCAAACCTG 57.424 45.455 0.00 0.00 0.00 4.00
2032 3007 5.600669 AAACTAGGAGAAATCCCAAACCT 57.399 39.130 0.00 0.00 0.00 3.50
2033 3008 6.010850 AGAAAACTAGGAGAAATCCCAAACC 58.989 40.000 0.00 0.00 0.00 3.27
2034 3009 7.883833 AGTAGAAAACTAGGAGAAATCCCAAAC 59.116 37.037 0.00 0.00 36.36 2.93
2035 3010 7.985589 AGTAGAAAACTAGGAGAAATCCCAAA 58.014 34.615 0.00 0.00 36.36 3.28
2036 3011 7.569599 AGTAGAAAACTAGGAGAAATCCCAA 57.430 36.000 0.00 0.00 36.36 4.12
2037 3012 7.569599 AAGTAGAAAACTAGGAGAAATCCCA 57.430 36.000 0.00 0.00 37.50 4.37
2038 3013 9.955102 TTTAAGTAGAAAACTAGGAGAAATCCC 57.045 33.333 0.00 0.00 37.50 3.85
2152 3127 9.616156 TCAGTGTCTATTAAAAACTGTTAACCA 57.384 29.630 2.48 0.00 39.39 3.67
2169 3144 9.944663 GTGTATTTGAAAAATGTTCAGTGTCTA 57.055 29.630 0.00 0.00 0.00 2.59
2170 3145 8.686334 AGTGTATTTGAAAAATGTTCAGTGTCT 58.314 29.630 0.00 0.00 0.00 3.41
2171 3146 8.745837 CAGTGTATTTGAAAAATGTTCAGTGTC 58.254 33.333 0.00 0.00 0.00 3.67
2172 3147 8.465999 TCAGTGTATTTGAAAAATGTTCAGTGT 58.534 29.630 14.31 0.00 0.00 3.55
2173 3148 8.854979 TCAGTGTATTTGAAAAATGTTCAGTG 57.145 30.769 0.00 5.96 0.00 3.66
2174 3149 9.301153 GTTCAGTGTATTTGAAAAATGTTCAGT 57.699 29.630 0.00 0.00 36.41 3.41
2175 3150 9.520204 AGTTCAGTGTATTTGAAAAATGTTCAG 57.480 29.630 0.00 0.00 36.41 3.02
2176 3151 9.868277 AAGTTCAGTGTATTTGAAAAATGTTCA 57.132 25.926 0.00 0.00 36.41 3.18
2228 3203 9.533253 CTGATTGTTGGATTTTTGTTAGAAGTT 57.467 29.630 0.00 0.00 0.00 2.66
2229 3204 8.695456 ACTGATTGTTGGATTTTTGTTAGAAGT 58.305 29.630 0.00 0.00 0.00 3.01
2230 3205 9.533253 AACTGATTGTTGGATTTTTGTTAGAAG 57.467 29.630 0.00 0.00 37.52 2.85
2231 3206 9.883142 AAACTGATTGTTGGATTTTTGTTAGAA 57.117 25.926 0.00 0.00 39.13 2.10
2232 3207 9.883142 AAAACTGATTGTTGGATTTTTGTTAGA 57.117 25.926 0.00 0.00 39.13 2.10
2261 3236 8.683615 ACTTTTTGGTTTTCTAGTCGATCTTTT 58.316 29.630 0.00 0.00 0.00 2.27
2262 3237 8.129211 CACTTTTTGGTTTTCTAGTCGATCTTT 58.871 33.333 0.00 0.00 0.00 2.52
2263 3238 7.497909 TCACTTTTTGGTTTTCTAGTCGATCTT 59.502 33.333 0.00 0.00 0.00 2.40
2264 3239 6.990349 TCACTTTTTGGTTTTCTAGTCGATCT 59.010 34.615 0.00 0.00 0.00 2.75
2265 3240 7.186021 TCACTTTTTGGTTTTCTAGTCGATC 57.814 36.000 0.00 0.00 0.00 3.69
2266 3241 7.562454 TTCACTTTTTGGTTTTCTAGTCGAT 57.438 32.000 0.00 0.00 0.00 3.59
2267 3242 6.988622 TTCACTTTTTGGTTTTCTAGTCGA 57.011 33.333 0.00 0.00 0.00 4.20
2268 3243 7.253651 GCTTTTCACTTTTTGGTTTTCTAGTCG 60.254 37.037 0.00 0.00 0.00 4.18
2269 3244 7.544217 TGCTTTTCACTTTTTGGTTTTCTAGTC 59.456 33.333 0.00 0.00 0.00 2.59
2270 3245 7.382898 TGCTTTTCACTTTTTGGTTTTCTAGT 58.617 30.769 0.00 0.00 0.00 2.57
2271 3246 7.759433 TCTGCTTTTCACTTTTTGGTTTTCTAG 59.241 33.333 0.00 0.00 0.00 2.43
2272 3247 7.607250 TCTGCTTTTCACTTTTTGGTTTTCTA 58.393 30.769 0.00 0.00 0.00 2.10
2273 3248 6.463360 TCTGCTTTTCACTTTTTGGTTTTCT 58.537 32.000 0.00 0.00 0.00 2.52
2274 3249 6.673076 GCTCTGCTTTTCACTTTTTGGTTTTC 60.673 38.462 0.00 0.00 0.00 2.29
2275 3250 5.122239 GCTCTGCTTTTCACTTTTTGGTTTT 59.878 36.000 0.00 0.00 0.00 2.43
2276 3251 4.631377 GCTCTGCTTTTCACTTTTTGGTTT 59.369 37.500 0.00 0.00 0.00 3.27
2277 3252 4.183865 GCTCTGCTTTTCACTTTTTGGTT 58.816 39.130 0.00 0.00 0.00 3.67
2278 3253 3.195396 TGCTCTGCTTTTCACTTTTTGGT 59.805 39.130 0.00 0.00 0.00 3.67
2279 3254 3.784338 TGCTCTGCTTTTCACTTTTTGG 58.216 40.909 0.00 0.00 0.00 3.28
2280 3255 5.349543 AGTTTGCTCTGCTTTTCACTTTTTG 59.650 36.000 0.00 0.00 0.00 2.44
2281 3256 5.482006 AGTTTGCTCTGCTTTTCACTTTTT 58.518 33.333 0.00 0.00 0.00 1.94
2282 3257 5.077134 AGTTTGCTCTGCTTTTCACTTTT 57.923 34.783 0.00 0.00 0.00 2.27
2283 3258 4.725790 AGTTTGCTCTGCTTTTCACTTT 57.274 36.364 0.00 0.00 0.00 2.66
2284 3259 6.396829 AATAGTTTGCTCTGCTTTTCACTT 57.603 33.333 0.00 0.00 0.00 3.16
2285 3260 6.039717 TGAAATAGTTTGCTCTGCTTTTCACT 59.960 34.615 0.00 0.00 0.00 3.41
2286 3261 6.208644 TGAAATAGTTTGCTCTGCTTTTCAC 58.791 36.000 0.00 0.00 0.00 3.18
2287 3262 6.262944 TCTGAAATAGTTTGCTCTGCTTTTCA 59.737 34.615 0.00 0.00 0.00 2.69
2288 3263 6.672147 TCTGAAATAGTTTGCTCTGCTTTTC 58.328 36.000 0.00 0.00 0.00 2.29
2289 3264 6.264067 ACTCTGAAATAGTTTGCTCTGCTTTT 59.736 34.615 0.00 0.00 0.00 2.27
2290 3265 5.767168 ACTCTGAAATAGTTTGCTCTGCTTT 59.233 36.000 0.00 0.00 0.00 3.51
2291 3266 5.180868 CACTCTGAAATAGTTTGCTCTGCTT 59.819 40.000 0.00 0.00 0.00 3.91
2292 3267 4.694509 CACTCTGAAATAGTTTGCTCTGCT 59.305 41.667 0.00 0.00 0.00 4.24
2293 3268 4.142730 CCACTCTGAAATAGTTTGCTCTGC 60.143 45.833 0.00 0.00 0.00 4.26
2294 3269 5.121454 GTCCACTCTGAAATAGTTTGCTCTG 59.879 44.000 0.00 0.00 0.00 3.35
2295 3270 5.012561 AGTCCACTCTGAAATAGTTTGCTCT 59.987 40.000 0.00 0.00 0.00 4.09
2296 3271 5.121454 CAGTCCACTCTGAAATAGTTTGCTC 59.879 44.000 0.00 0.00 37.61 4.26
2297 3272 4.999950 CAGTCCACTCTGAAATAGTTTGCT 59.000 41.667 0.00 0.00 37.61 3.91
2298 3273 4.154918 CCAGTCCACTCTGAAATAGTTTGC 59.845 45.833 0.00 0.00 37.61 3.68
2299 3274 4.154918 GCCAGTCCACTCTGAAATAGTTTG 59.845 45.833 0.00 0.00 37.61 2.93
2300 3275 4.327680 GCCAGTCCACTCTGAAATAGTTT 58.672 43.478 0.00 0.00 37.61 2.66
2301 3276 3.307762 GGCCAGTCCACTCTGAAATAGTT 60.308 47.826 0.00 0.00 37.61 2.24
2302 3277 2.237392 GGCCAGTCCACTCTGAAATAGT 59.763 50.000 0.00 0.00 37.61 2.12
2303 3278 2.420687 GGGCCAGTCCACTCTGAAATAG 60.421 54.545 4.39 0.00 37.61 1.73
2304 3279 1.559682 GGGCCAGTCCACTCTGAAATA 59.440 52.381 4.39 0.00 37.61 1.40
2305 3280 0.329596 GGGCCAGTCCACTCTGAAAT 59.670 55.000 4.39 0.00 37.61 2.17
2306 3281 1.059584 TGGGCCAGTCCACTCTGAAA 61.060 55.000 0.00 0.00 37.61 2.69
2307 3282 0.842030 ATGGGCCAGTCCACTCTGAA 60.842 55.000 13.78 0.00 39.97 3.02
2308 3283 1.229625 ATGGGCCAGTCCACTCTGA 60.230 57.895 13.78 0.00 39.97 3.27
2309 3284 1.222936 GATGGGCCAGTCCACTCTG 59.777 63.158 13.78 0.00 39.97 3.35
2310 3285 1.229625 TGATGGGCCAGTCCACTCT 60.230 57.895 13.78 0.00 39.97 3.24
2311 3286 1.222936 CTGATGGGCCAGTCCACTC 59.777 63.158 13.78 3.68 39.97 3.51
2312 3287 2.976490 GCTGATGGGCCAGTCCACT 61.976 63.158 13.78 0.00 39.97 4.00
2313 3288 2.439156 GCTGATGGGCCAGTCCAC 60.439 66.667 13.78 1.45 39.97 4.02
2314 3289 2.079088 TTTGCTGATGGGCCAGTCCA 62.079 55.000 13.78 9.09 41.60 4.02
2315 3290 0.685458 ATTTGCTGATGGGCCAGTCC 60.685 55.000 13.78 4.27 36.57 3.85
2316 3291 1.188863 AATTTGCTGATGGGCCAGTC 58.811 50.000 13.78 10.52 36.57 3.51
2317 3292 2.530460 TAATTTGCTGATGGGCCAGT 57.470 45.000 13.78 0.00 36.57 4.00
2318 3293 4.141892 TGAAATAATTTGCTGATGGGCCAG 60.142 41.667 13.78 0.00 37.23 4.85
2319 3294 3.773667 TGAAATAATTTGCTGATGGGCCA 59.226 39.130 9.61 9.61 0.00 5.36
2320 3295 4.374399 CTGAAATAATTTGCTGATGGGCC 58.626 43.478 0.00 0.00 0.00 5.80
2321 3296 4.141869 ACCTGAAATAATTTGCTGATGGGC 60.142 41.667 0.00 0.00 0.00 5.36
2322 3297 5.127519 TCACCTGAAATAATTTGCTGATGGG 59.872 40.000 0.00 0.00 0.00 4.00
2323 3298 6.211587 TCACCTGAAATAATTTGCTGATGG 57.788 37.500 0.00 0.00 0.00 3.51
2324 3299 6.270815 CCTCACCTGAAATAATTTGCTGATG 58.729 40.000 0.00 0.00 0.00 3.07
2325 3300 5.163478 GCCTCACCTGAAATAATTTGCTGAT 60.163 40.000 0.00 0.00 0.00 2.90
2326 3301 4.158394 GCCTCACCTGAAATAATTTGCTGA 59.842 41.667 0.00 0.00 0.00 4.26
2327 3302 4.427312 GCCTCACCTGAAATAATTTGCTG 58.573 43.478 0.00 0.00 0.00 4.41
2328 3303 3.448660 GGCCTCACCTGAAATAATTTGCT 59.551 43.478 0.00 0.00 34.51 3.91
2329 3304 3.785486 GGCCTCACCTGAAATAATTTGC 58.215 45.455 0.00 0.00 34.51 3.68
2342 3317 3.827898 CCGAGACGAGGCCTCACC 61.828 72.222 31.67 21.44 39.61 4.02
2343 3318 3.063084 ACCGAGACGAGGCCTCAC 61.063 66.667 31.67 23.37 0.00 3.51
2344 3319 3.062466 CACCGAGACGAGGCCTCA 61.062 66.667 31.67 0.00 0.00 3.86
2345 3320 4.500116 GCACCGAGACGAGGCCTC 62.500 72.222 23.79 23.79 0.00 4.70
2362 3337 2.743928 GGCTCTCAGGCAACGGTG 60.744 66.667 0.00 0.00 40.97 4.94
2363 3338 2.925170 AGGCTCTCAGGCAACGGT 60.925 61.111 0.00 0.00 44.19 4.83
2364 3339 2.125350 GAGGCTCTCAGGCAACGG 60.125 66.667 7.40 0.00 44.19 4.44
2365 3340 1.153667 GAGAGGCTCTCAGGCAACG 60.154 63.158 33.95 0.00 44.19 4.10
2366 3341 1.153667 CGAGAGGCTCTCAGGCAAC 60.154 63.158 36.18 14.82 43.55 4.17
2367 3342 1.599606 GACGAGAGGCTCTCAGGCAA 61.600 60.000 36.18 0.00 43.55 4.52
2368 3343 2.036414 ACGAGAGGCTCTCAGGCA 59.964 61.111 36.18 0.00 43.55 4.75
2369 3344 2.804856 GACGAGAGGCTCTCAGGC 59.195 66.667 36.18 28.22 43.55 4.85
2370 3345 3.106552 CGACGAGAGGCTCTCAGG 58.893 66.667 36.18 25.78 43.55 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.