Multiple sequence alignment - TraesCS5D01G569600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G569600 chr5D 100.000 2891 0 0 1 2891 565910823 565907933 0.000000e+00 5339.0
1 TraesCS5D01G569600 chr4A 87.317 1569 108 49 631 2150 607428916 607427390 0.000000e+00 1711.0
2 TraesCS5D01G569600 chr4A 84.715 543 72 5 1084 1625 731490497 731489965 1.530000e-147 532.0
3 TraesCS5D01G569600 chr4A 82.847 548 85 4 1084 1631 731385271 731384733 1.560000e-132 483.0
4 TraesCS5D01G569600 chr4A 81.340 209 18 16 2543 2730 607426822 607426614 1.790000e-32 150.0
5 TraesCS5D01G569600 chr5B 86.318 1681 92 57 702 2314 707173318 707174928 0.000000e+00 1703.0
6 TraesCS5D01G569600 chr5B 88.543 611 40 16 18 605 648750967 648750364 0.000000e+00 713.0
7 TraesCS5D01G569600 chr5B 85.836 353 19 11 2482 2803 707174961 707175313 2.130000e-91 346.0
8 TraesCS5D01G569600 chr5B 88.732 71 7 1 2411 2481 397689966 397690035 5.130000e-13 86.1
9 TraesCS5D01G569600 chr5B 91.667 60 4 1 2411 2470 330004402 330004460 6.640000e-12 82.4
10 TraesCS5D01G569600 chr5B 88.235 51 0 3 604 654 707173243 707173287 4.020000e-04 56.5
11 TraesCS5D01G569600 chr7A 88.707 611 39 16 18 605 618475204 618474601 0.000000e+00 719.0
12 TraesCS5D01G569600 chr7A 94.773 440 17 6 166 605 671092816 671092383 0.000000e+00 680.0
13 TraesCS5D01G569600 chr7A 94.545 440 18 6 166 605 656037083 656037516 0.000000e+00 675.0
14 TraesCS5D01G569600 chr7A 81.078 835 111 23 1084 1885 8823171 8823991 8.800000e-175 623.0
15 TraesCS5D01G569600 chr7A 85.055 542 75 4 1084 1625 8688786 8689321 5.450000e-152 547.0
16 TraesCS5D01G569600 chr7A 83.942 548 79 2 1084 1631 8884737 8885275 1.540000e-142 516.0
17 TraesCS5D01G569600 chr3A 88.707 611 39 16 18 605 492204076 492203473 0.000000e+00 719.0
18 TraesCS5D01G569600 chr3A 88.312 616 38 19 15 605 218320183 218320789 0.000000e+00 708.0
19 TraesCS5D01G569600 chr5A 87.639 631 46 17 1 605 10938452 10939076 0.000000e+00 704.0
20 TraesCS5D01G569600 chr2A 94.773 440 17 6 166 605 204631012 204630579 0.000000e+00 680.0
21 TraesCS5D01G569600 chr2A 88.312 77 7 2 2409 2484 673032111 673032186 1.100000e-14 91.6
22 TraesCS5D01G569600 chr3B 94.545 440 18 6 166 605 425725039 425725472 0.000000e+00 675.0
23 TraesCS5D01G569600 chr3B 89.189 74 7 1 2409 2482 603574721 603574649 1.100000e-14 91.6
24 TraesCS5D01G569600 chr7D 81.753 833 109 22 1084 1885 8376020 8376840 0.000000e+00 656.0
25 TraesCS5D01G569600 chr7D 81.513 833 106 30 1084 1885 8250458 8251273 2.430000e-180 641.0
26 TraesCS5D01G569600 chr1A 94.737 76 3 1 2409 2484 164832510 164832584 1.820000e-22 117.0
27 TraesCS5D01G569600 chr6D 92.105 76 5 1 2409 2484 57898667 57898593 3.940000e-19 106.0
28 TraesCS5D01G569600 chr1D 93.151 73 4 1 2409 2481 298620881 298620952 3.940000e-19 106.0
29 TraesCS5D01G569600 chr1B 91.781 73 5 1 2409 2481 549731358 549731287 1.830000e-17 100.0
30 TraesCS5D01G569600 chr2B 88.158 76 8 1 2409 2484 569237447 569237373 3.970000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G569600 chr5D 565907933 565910823 2890 True 5339.000000 5339 100.000000 1 2891 1 chr5D.!!$R1 2890
1 TraesCS5D01G569600 chr4A 607426614 607428916 2302 True 930.500000 1711 84.328500 631 2730 2 chr4A.!!$R3 2099
2 TraesCS5D01G569600 chr4A 731489965 731490497 532 True 532.000000 532 84.715000 1084 1625 1 chr4A.!!$R2 541
3 TraesCS5D01G569600 chr4A 731384733 731385271 538 True 483.000000 483 82.847000 1084 1631 1 chr4A.!!$R1 547
4 TraesCS5D01G569600 chr5B 648750364 648750967 603 True 713.000000 713 88.543000 18 605 1 chr5B.!!$R1 587
5 TraesCS5D01G569600 chr5B 707173243 707175313 2070 False 701.833333 1703 86.796333 604 2803 3 chr5B.!!$F3 2199
6 TraesCS5D01G569600 chr7A 618474601 618475204 603 True 719.000000 719 88.707000 18 605 1 chr7A.!!$R1 587
7 TraesCS5D01G569600 chr7A 8823171 8823991 820 False 623.000000 623 81.078000 1084 1885 1 chr7A.!!$F2 801
8 TraesCS5D01G569600 chr7A 8688786 8689321 535 False 547.000000 547 85.055000 1084 1625 1 chr7A.!!$F1 541
9 TraesCS5D01G569600 chr7A 8884737 8885275 538 False 516.000000 516 83.942000 1084 1631 1 chr7A.!!$F3 547
10 TraesCS5D01G569600 chr3A 492203473 492204076 603 True 719.000000 719 88.707000 18 605 1 chr3A.!!$R1 587
11 TraesCS5D01G569600 chr3A 218320183 218320789 606 False 708.000000 708 88.312000 15 605 1 chr3A.!!$F1 590
12 TraesCS5D01G569600 chr5A 10938452 10939076 624 False 704.000000 704 87.639000 1 605 1 chr5A.!!$F1 604
13 TraesCS5D01G569600 chr7D 8376020 8376840 820 False 656.000000 656 81.753000 1084 1885 1 chr7D.!!$F2 801
14 TraesCS5D01G569600 chr7D 8250458 8251273 815 False 641.000000 641 81.513000 1084 1885 1 chr7D.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 889 0.032952 TTCACTGTACCACTCCGTGC 59.967 55.0 0.0 0.0 31.34 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2788 3365 0.106519 ACACCATGGATGCCCTAAGC 60.107 55.0 21.47 0.0 44.14 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.419673 TCGCGGACGACTTCTGTTTATA 59.580 45.455 6.13 0.00 45.12 0.98
51 52 9.460906 GACGACTTCTGTTTATATAAGGTAAGG 57.539 37.037 0.00 0.00 0.00 2.69
56 57 8.918202 TTCTGTTTATATAAGGTAAGGCCATG 57.082 34.615 5.01 0.00 40.61 3.66
63 64 2.332063 AGGTAAGGCCATGTCATTCG 57.668 50.000 5.01 0.00 40.61 3.34
69 70 1.164411 GGCCATGTCATTCGTCACAA 58.836 50.000 0.00 0.00 0.00 3.33
71 72 1.466360 GCCATGTCATTCGTCACAAGC 60.466 52.381 0.00 0.00 0.00 4.01
77 78 0.999406 CATTCGTCACAAGCGGTAGG 59.001 55.000 0.00 0.00 0.00 3.18
104 105 1.932277 GCGGTTATTAGCCTCACGC 59.068 57.895 0.00 0.00 38.70 5.34
107 108 1.472728 CGGTTATTAGCCTCACGCCTT 60.473 52.381 0.00 0.00 38.78 4.35
109 110 1.859080 GTTATTAGCCTCACGCCTTCG 59.141 52.381 0.00 0.00 38.78 3.79
121 128 1.313812 CGCCTTCGTACCTGAGACCT 61.314 60.000 0.00 0.00 0.00 3.85
128 135 1.640917 GTACCTGAGACCTGGGTTCA 58.359 55.000 0.00 0.23 35.88 3.18
130 137 1.518367 ACCTGAGACCTGGGTTCAAA 58.482 50.000 0.00 0.00 35.88 2.69
134 141 1.003118 TGAGACCTGGGTTCAAATCCG 59.997 52.381 0.00 0.00 29.24 4.18
136 143 0.037734 GACCTGGGTTCAAATCCGGT 59.962 55.000 0.00 7.87 38.30 5.28
138 145 1.173913 CCTGGGTTCAAATCCGGTTC 58.826 55.000 0.00 0.00 33.47 3.62
143 150 2.357075 GGTTCAAATCCGGTTCTCTCC 58.643 52.381 0.00 0.00 0.00 3.71
145 152 1.952621 TCAAATCCGGTTCTCTCCCT 58.047 50.000 0.00 0.00 0.00 4.20
159 169 6.472016 GTTCTCTCCCTTTTTCTCATTCTCT 58.528 40.000 0.00 0.00 0.00 3.10
164 174 8.207350 TCTCCCTTTTTCTCATTCTCTTTCTA 57.793 34.615 0.00 0.00 0.00 2.10
209 240 2.126882 ACTTAGCAGATGGGCCACATA 58.873 47.619 9.28 0.00 40.72 2.29
213 244 1.216175 AGCAGATGGGCCACATAATGT 59.784 47.619 9.28 0.00 40.72 2.71
222 253 4.021544 TGGGCCACATAATGTTTTCAGTTC 60.022 41.667 0.00 0.00 0.00 3.01
232 263 0.185901 TTTTCAGTTCTGGCCCAGCT 59.814 50.000 5.66 0.00 0.00 4.24
236 267 0.107945 CAGTTCTGGCCCAGCTACTC 60.108 60.000 5.66 0.00 28.80 2.59
246 277 6.013554 TGGCCCAGCTACTCTATTTTTATT 57.986 37.500 0.00 0.00 0.00 1.40
436 467 9.739276 ATATCTTCTTTACATGTGGTTTTCTGA 57.261 29.630 9.11 0.00 0.00 3.27
543 574 3.889196 TTGCGAAACACCACTTATCAC 57.111 42.857 0.00 0.00 0.00 3.06
587 618 4.335416 TGAAAGATTTCAAGGGATTCGCT 58.665 39.130 5.55 0.00 43.62 4.93
635 666 2.302230 CGCCGTTGCCTTTTGCTTG 61.302 57.895 0.00 0.00 42.00 4.01
637 668 1.300853 CCGTTGCCTTTTGCTTGGG 60.301 57.895 0.00 0.00 42.00 4.12
682 714 1.531470 GCTCCAGTACTACGCGTCTTC 60.531 57.143 18.63 5.19 0.00 2.87
686 718 0.450983 AGTACTACGCGTCTTCTGCC 59.549 55.000 18.63 0.00 0.00 4.85
689 721 4.789075 TACGCGTCTTCTGCCGCC 62.789 66.667 18.63 0.00 46.83 6.13
695 727 1.292223 GTCTTCTGCCGCCACACTA 59.708 57.895 0.00 0.00 0.00 2.74
708 745 4.321452 CCGCCACACTACACTAGAGTAAAA 60.321 45.833 0.00 0.00 0.00 1.52
709 746 5.408356 CGCCACACTACACTAGAGTAAAAT 58.592 41.667 0.00 0.00 0.00 1.82
805 844 4.111016 CAGCACAGCACGCCATGG 62.111 66.667 7.63 7.63 0.00 3.66
825 879 2.143925 GCCACCACTCTTTCACTGTAC 58.856 52.381 0.00 0.00 0.00 2.90
826 880 2.767505 CCACCACTCTTTCACTGTACC 58.232 52.381 0.00 0.00 0.00 3.34
830 884 3.069729 ACCACTCTTTCACTGTACCACTC 59.930 47.826 0.00 0.00 0.00 3.51
831 885 3.555168 CCACTCTTTCACTGTACCACTCC 60.555 52.174 0.00 0.00 0.00 3.85
832 886 2.296471 ACTCTTTCACTGTACCACTCCG 59.704 50.000 0.00 0.00 0.00 4.63
833 887 2.296471 CTCTTTCACTGTACCACTCCGT 59.704 50.000 0.00 0.00 0.00 4.69
834 888 2.035449 TCTTTCACTGTACCACTCCGTG 59.965 50.000 0.00 0.00 0.00 4.94
835 889 0.032952 TTCACTGTACCACTCCGTGC 59.967 55.000 0.00 0.00 31.34 5.34
836 890 1.110518 TCACTGTACCACTCCGTGCA 61.111 55.000 0.00 0.00 31.34 4.57
838 892 1.733041 CTGTACCACTCCGTGCACG 60.733 63.158 31.77 31.77 39.44 5.34
899 954 1.328069 CGCGCCGAATTTATTACCACA 59.672 47.619 0.00 0.00 0.00 4.17
900 955 2.223066 CGCGCCGAATTTATTACCACAA 60.223 45.455 0.00 0.00 0.00 3.33
901 956 3.547214 CGCGCCGAATTTATTACCACAAT 60.547 43.478 0.00 0.00 0.00 2.71
902 957 4.318903 CGCGCCGAATTTATTACCACAATA 60.319 41.667 0.00 0.00 0.00 1.90
903 958 5.615984 CGCGCCGAATTTATTACCACAATAT 60.616 40.000 0.00 0.00 0.00 1.28
904 959 5.793457 GCGCCGAATTTATTACCACAATATC 59.207 40.000 0.00 0.00 0.00 1.63
905 960 6.013085 CGCCGAATTTATTACCACAATATCG 58.987 40.000 0.00 0.00 0.00 2.92
942 1013 1.519455 CTCTCCAACGGTGCGATCC 60.519 63.158 0.00 0.00 0.00 3.36
949 1020 4.201679 CGGTGCGATCCGGTGCTA 62.202 66.667 15.08 2.22 45.88 3.49
950 1021 2.585247 GGTGCGATCCGGTGCTAC 60.585 66.667 15.08 11.53 0.00 3.58
951 1022 2.585247 GTGCGATCCGGTGCTACC 60.585 66.667 15.08 0.00 34.05 3.18
1572 1659 1.367840 GATGGAGGCGCTTATCCGT 59.632 57.895 17.59 17.59 38.52 4.69
1584 1671 1.385756 TTATCCGTGATGTCCGGCGA 61.386 55.000 9.30 0.00 45.09 5.54
1680 1819 0.463204 CTCACCGCTCACTCCATGAT 59.537 55.000 0.00 0.00 36.48 2.45
1686 1825 2.159476 CCGCTCACTCCATGATGTTTTG 60.159 50.000 0.00 0.00 36.48 2.44
1688 1827 2.416431 GCTCACTCCATGATGTTTTGGC 60.416 50.000 0.00 0.00 36.48 4.52
1689 1828 2.165030 CTCACTCCATGATGTTTTGGCC 59.835 50.000 0.00 0.00 36.48 5.36
1895 2052 1.639298 GCCACGCTCCACTGATTGAC 61.639 60.000 0.00 0.00 0.00 3.18
1901 2058 2.715046 GCTCCACTGATTGACAATCCA 58.285 47.619 22.44 11.48 37.09 3.41
1902 2059 2.681848 GCTCCACTGATTGACAATCCAG 59.318 50.000 22.44 20.05 37.09 3.86
1903 2060 3.871463 GCTCCACTGATTGACAATCCAGT 60.871 47.826 22.44 20.57 37.09 4.00
1904 2061 4.623886 GCTCCACTGATTGACAATCCAGTA 60.624 45.833 22.44 11.90 37.09 2.74
1905 2062 5.491070 CTCCACTGATTGACAATCCAGTAA 58.509 41.667 22.44 15.20 37.09 2.24
1906 2063 5.245531 TCCACTGATTGACAATCCAGTAAC 58.754 41.667 22.44 0.41 37.09 2.50
1907 2064 4.396166 CCACTGATTGACAATCCAGTAACC 59.604 45.833 22.44 0.00 37.09 2.85
1908 2065 5.003160 CACTGATTGACAATCCAGTAACCA 58.997 41.667 22.44 4.16 37.09 3.67
1909 2066 5.649395 CACTGATTGACAATCCAGTAACCAT 59.351 40.000 22.44 3.97 37.09 3.55
1910 2067 5.649395 ACTGATTGACAATCCAGTAACCATG 59.351 40.000 22.44 5.46 37.09 3.66
1911 2068 5.814481 TGATTGACAATCCAGTAACCATGA 58.186 37.500 22.44 0.00 37.09 3.07
1912 2069 6.425735 TGATTGACAATCCAGTAACCATGAT 58.574 36.000 22.44 0.00 37.09 2.45
1913 2070 6.891361 TGATTGACAATCCAGTAACCATGATT 59.109 34.615 22.44 0.00 37.09 2.57
1946 2116 2.676750 CGTGTGCCTGCCTGATTACTAA 60.677 50.000 0.00 0.00 0.00 2.24
1947 2117 3.545703 GTGTGCCTGCCTGATTACTAAT 58.454 45.455 0.00 0.00 0.00 1.73
1966 2139 7.277174 ACTAATTAATAAGCACCTGGATTGC 57.723 36.000 0.00 0.00 40.52 3.56
1977 2150 4.640201 GCACCTGGATTGCTTAGTTTGATA 59.360 41.667 0.00 0.00 37.00 2.15
1978 2151 5.300286 GCACCTGGATTGCTTAGTTTGATAT 59.700 40.000 0.00 0.00 37.00 1.63
1979 2152 6.514048 GCACCTGGATTGCTTAGTTTGATATC 60.514 42.308 0.00 0.00 37.00 1.63
1981 2154 6.995091 ACCTGGATTGCTTAGTTTGATATCTC 59.005 38.462 0.00 0.00 0.00 2.75
1982 2155 7.147408 ACCTGGATTGCTTAGTTTGATATCTCT 60.147 37.037 0.00 3.05 0.00 3.10
1983 2156 8.370940 CCTGGATTGCTTAGTTTGATATCTCTA 58.629 37.037 3.98 2.15 0.00 2.43
1984 2157 9.421806 CTGGATTGCTTAGTTTGATATCTCTAG 57.578 37.037 3.98 0.00 0.00 2.43
1985 2158 8.928448 TGGATTGCTTAGTTTGATATCTCTAGT 58.072 33.333 3.98 0.00 0.00 2.57
1986 2159 9.418045 GGATTGCTTAGTTTGATATCTCTAGTC 57.582 37.037 3.98 2.19 0.00 2.59
1988 2161 7.898014 TGCTTAGTTTGATATCTCTAGTCCA 57.102 36.000 3.98 1.71 0.00 4.02
1989 2162 8.484214 TGCTTAGTTTGATATCTCTAGTCCAT 57.516 34.615 3.98 0.00 0.00 3.41
1990 2163 9.588096 TGCTTAGTTTGATATCTCTAGTCCATA 57.412 33.333 3.98 0.00 0.00 2.74
2039 2223 3.016736 GGTGATGATTAGTTGTGGTGGG 58.983 50.000 0.00 0.00 0.00 4.61
2041 2225 3.689649 GTGATGATTAGTTGTGGTGGGTC 59.310 47.826 0.00 0.00 0.00 4.46
2042 2226 2.465860 TGATTAGTTGTGGTGGGTCG 57.534 50.000 0.00 0.00 0.00 4.79
2063 2247 3.374988 CGCAGATTAAGTGGCTGATGAAA 59.625 43.478 0.00 0.00 0.00 2.69
2066 2250 5.124457 GCAGATTAAGTGGCTGATGAAAGAA 59.876 40.000 0.00 0.00 0.00 2.52
2070 2254 6.992063 TTAAGTGGCTGATGAAAGAATCTC 57.008 37.500 0.00 0.00 0.00 2.75
2077 2261 6.769822 TGGCTGATGAAAGAATCTCCTTAATC 59.230 38.462 0.00 0.00 0.00 1.75
2096 2293 3.170791 TCAGTCTGTATTAGCAGCAGC 57.829 47.619 0.00 0.00 42.56 5.25
2098 2295 2.864946 CAGTCTGTATTAGCAGCAGCAG 59.135 50.000 3.17 0.00 45.49 4.24
2099 2296 1.596727 GTCTGTATTAGCAGCAGCAGC 59.403 52.381 3.17 0.46 45.49 5.25
2100 2297 1.207811 TCTGTATTAGCAGCAGCAGCA 59.792 47.619 12.92 0.00 45.49 4.41
2101 2298 1.598132 CTGTATTAGCAGCAGCAGCAG 59.402 52.381 12.92 0.00 45.49 4.24
2115 2312 4.427394 GCAGCAGCGTAGTAGCAT 57.573 55.556 0.00 0.00 40.15 3.79
2118 2315 0.926155 CAGCAGCGTAGTAGCATGTG 59.074 55.000 0.00 0.00 40.15 3.21
2136 2340 1.059584 TGTGTCAGGCTCCCAAAGGA 61.060 55.000 0.00 0.00 41.08 3.36
2150 2354 3.131046 CCCAAAGGATGCAACTGATTACC 59.869 47.826 0.00 0.00 33.47 2.85
2152 2356 7.123218 CCCAAAGGATGCAACTGATTACCAG 62.123 48.000 0.00 0.00 41.70 4.00
2170 2458 3.571401 ACCAGATTATTGCTGCCATTAGC 59.429 43.478 0.00 0.00 43.95 3.09
2197 2720 7.413644 TGATTTATGCATTTGTGTATGTACGG 58.586 34.615 3.54 0.00 0.00 4.02
2199 2722 4.614555 ATGCATTTGTGTATGTACGGTG 57.385 40.909 0.00 0.00 0.00 4.94
2200 2723 2.160615 TGCATTTGTGTATGTACGGTGC 59.839 45.455 0.00 0.00 0.00 5.01
2201 2724 2.477189 GCATTTGTGTATGTACGGTGCC 60.477 50.000 0.00 0.00 0.00 5.01
2202 2725 1.430479 TTTGTGTATGTACGGTGCCG 58.570 50.000 9.29 9.29 46.03 5.69
2203 2726 0.602060 TTGTGTATGTACGGTGCCGA 59.398 50.000 18.16 0.00 42.83 5.54
2204 2727 0.602060 TGTGTATGTACGGTGCCGAA 59.398 50.000 18.16 2.93 42.83 4.30
2205 2728 1.274596 GTGTATGTACGGTGCCGAAG 58.725 55.000 18.16 0.00 42.83 3.79
2206 2729 0.889994 TGTATGTACGGTGCCGAAGT 59.110 50.000 18.16 0.00 42.83 3.01
2207 2730 1.273048 TGTATGTACGGTGCCGAAGTT 59.727 47.619 18.16 0.00 42.83 2.66
2208 2731 2.491298 TGTATGTACGGTGCCGAAGTTA 59.509 45.455 18.16 0.00 42.83 2.24
2209 2732 2.000429 ATGTACGGTGCCGAAGTTAC 58.000 50.000 18.16 9.52 42.83 2.50
2210 2733 0.961019 TGTACGGTGCCGAAGTTACT 59.039 50.000 18.16 0.00 42.83 2.24
2211 2734 1.336148 TGTACGGTGCCGAAGTTACTG 60.336 52.381 18.16 0.00 42.83 2.74
2212 2735 0.388907 TACGGTGCCGAAGTTACTGC 60.389 55.000 18.16 0.00 42.83 4.40
2213 2736 2.726691 CGGTGCCGAAGTTACTGCG 61.727 63.158 5.64 5.64 42.83 5.18
2214 2737 1.666872 GGTGCCGAAGTTACTGCGT 60.667 57.895 12.13 0.00 29.03 5.24
2215 2738 0.388907 GGTGCCGAAGTTACTGCGTA 60.389 55.000 12.13 0.00 29.03 4.42
2216 2739 0.989890 GTGCCGAAGTTACTGCGTAG 59.010 55.000 12.13 0.00 29.03 3.51
2217 2740 0.883153 TGCCGAAGTTACTGCGTAGA 59.117 50.000 12.13 0.00 29.03 2.59
2218 2741 1.475280 TGCCGAAGTTACTGCGTAGAT 59.525 47.619 12.13 0.00 29.03 1.98
2219 2742 2.094390 TGCCGAAGTTACTGCGTAGATT 60.094 45.455 12.13 0.00 29.03 2.40
2220 2743 3.129113 TGCCGAAGTTACTGCGTAGATTA 59.871 43.478 12.13 0.00 29.03 1.75
2221 2744 4.202080 TGCCGAAGTTACTGCGTAGATTAT 60.202 41.667 12.13 0.00 29.03 1.28
2250 2773 4.374399 TCCGTCTTACTTTTGGTTCTCAC 58.626 43.478 0.00 0.00 0.00 3.51
2251 2774 4.100498 TCCGTCTTACTTTTGGTTCTCACT 59.900 41.667 0.00 0.00 0.00 3.41
2252 2775 4.814771 CCGTCTTACTTTTGGTTCTCACTT 59.185 41.667 0.00 0.00 0.00 3.16
2253 2776 5.277345 CCGTCTTACTTTTGGTTCTCACTTG 60.277 44.000 0.00 0.00 0.00 3.16
2254 2777 5.293569 CGTCTTACTTTTGGTTCTCACTTGT 59.706 40.000 0.00 0.00 0.00 3.16
2309 2834 8.365399 TCGACACCAACATTATCAGATTTATC 57.635 34.615 0.00 0.00 0.00 1.75
2344 2872 7.049754 ACTGAAAAGAAAAATTGGTGCAATCT 58.950 30.769 0.00 0.00 32.43 2.40
2345 2873 7.011669 ACTGAAAAGAAAAATTGGTGCAATCTG 59.988 33.333 0.00 0.00 32.43 2.90
2346 2874 5.678132 AAAGAAAAATTGGTGCAATCTGC 57.322 34.783 0.00 0.00 45.29 4.26
2360 2888 0.330604 ATCTGCCAGCCAATCAGTGT 59.669 50.000 0.00 0.00 0.00 3.55
2361 2889 0.111061 TCTGCCAGCCAATCAGTGTT 59.889 50.000 0.00 0.00 0.00 3.32
2362 2890 1.350684 TCTGCCAGCCAATCAGTGTTA 59.649 47.619 0.00 0.00 0.00 2.41
2363 2891 2.025981 TCTGCCAGCCAATCAGTGTTAT 60.026 45.455 0.00 0.00 0.00 1.89
2364 2892 2.357009 CTGCCAGCCAATCAGTGTTATC 59.643 50.000 0.00 0.00 0.00 1.75
2365 2893 2.025981 TGCCAGCCAATCAGTGTTATCT 60.026 45.455 0.00 0.00 0.00 1.98
2366 2894 2.615912 GCCAGCCAATCAGTGTTATCTC 59.384 50.000 0.00 0.00 0.00 2.75
2367 2895 2.868583 CCAGCCAATCAGTGTTATCTCG 59.131 50.000 0.00 0.00 0.00 4.04
2368 2896 3.430790 CCAGCCAATCAGTGTTATCTCGA 60.431 47.826 0.00 0.00 0.00 4.04
2369 2897 4.375272 CAGCCAATCAGTGTTATCTCGAT 58.625 43.478 0.00 0.00 0.00 3.59
2370 2898 4.447054 CAGCCAATCAGTGTTATCTCGATC 59.553 45.833 0.00 0.00 0.00 3.69
2371 2899 4.343526 AGCCAATCAGTGTTATCTCGATCT 59.656 41.667 0.00 0.00 0.00 2.75
2372 2900 4.447054 GCCAATCAGTGTTATCTCGATCTG 59.553 45.833 0.00 0.00 0.00 2.90
2373 2901 4.447054 CCAATCAGTGTTATCTCGATCTGC 59.553 45.833 0.00 0.00 0.00 4.26
2374 2902 4.926140 ATCAGTGTTATCTCGATCTGCA 57.074 40.909 0.00 0.00 0.00 4.41
2375 2903 4.033990 TCAGTGTTATCTCGATCTGCAC 57.966 45.455 0.00 0.00 0.00 4.57
2376 2904 3.696548 TCAGTGTTATCTCGATCTGCACT 59.303 43.478 0.00 0.00 36.32 4.40
2377 2905 3.795639 CAGTGTTATCTCGATCTGCACTG 59.204 47.826 16.77 16.77 43.71 3.66
2378 2906 2.537625 GTGTTATCTCGATCTGCACTGC 59.462 50.000 0.00 0.00 0.00 4.40
2379 2907 1.783711 GTTATCTCGATCTGCACTGCG 59.216 52.381 0.00 0.00 0.00 5.18
2380 2908 0.318191 TATCTCGATCTGCACTGCGC 60.318 55.000 0.00 0.00 42.89 6.09
2381 2909 2.014064 ATCTCGATCTGCACTGCGCT 62.014 55.000 9.73 0.00 43.06 5.92
2382 2910 2.507769 TCGATCTGCACTGCGCTG 60.508 61.111 13.23 13.23 43.06 5.18
2383 2911 4.219846 CGATCTGCACTGCGCTGC 62.220 66.667 14.80 14.49 43.06 5.25
2384 2912 4.219846 GATCTGCACTGCGCTGCG 62.220 66.667 19.17 19.17 43.06 5.18
2411 2939 3.426568 GTGCGGTGCAGGCTTCTC 61.427 66.667 10.67 0.00 40.08 2.87
2413 2941 2.669569 GCGGTGCAGGCTTCTCAA 60.670 61.111 2.51 0.00 0.00 3.02
2414 2942 2.970974 GCGGTGCAGGCTTCTCAAC 61.971 63.158 2.51 0.00 0.00 3.18
2415 2943 1.302033 CGGTGCAGGCTTCTCAACT 60.302 57.895 0.00 0.00 0.00 3.16
2416 2944 0.886490 CGGTGCAGGCTTCTCAACTT 60.886 55.000 0.00 0.00 0.00 2.66
2417 2945 1.322442 GGTGCAGGCTTCTCAACTTT 58.678 50.000 0.00 0.00 0.00 2.66
2418 2946 1.000938 GGTGCAGGCTTCTCAACTTTG 60.001 52.381 0.00 0.00 0.00 2.77
2419 2947 1.678101 GTGCAGGCTTCTCAACTTTGT 59.322 47.619 0.00 0.00 0.00 2.83
2420 2948 2.878406 GTGCAGGCTTCTCAACTTTGTA 59.122 45.455 0.00 0.00 0.00 2.41
2422 2950 3.142174 GCAGGCTTCTCAACTTTGTACT 58.858 45.455 0.00 0.00 0.00 2.73
2423 2951 4.202315 TGCAGGCTTCTCAACTTTGTACTA 60.202 41.667 0.00 0.00 0.00 1.82
2424 2952 4.390297 GCAGGCTTCTCAACTTTGTACTAG 59.610 45.833 0.00 0.00 0.00 2.57
2425 2953 4.390297 CAGGCTTCTCAACTTTGTACTAGC 59.610 45.833 0.00 0.00 0.00 3.42
2426 2954 4.284746 AGGCTTCTCAACTTTGTACTAGCT 59.715 41.667 0.00 0.00 0.00 3.32
2427 2955 4.627900 GGCTTCTCAACTTTGTACTAGCTC 59.372 45.833 0.00 0.00 0.00 4.09
2428 2956 5.474825 GCTTCTCAACTTTGTACTAGCTCT 58.525 41.667 0.00 0.00 0.00 4.09
2429 2957 6.350277 GGCTTCTCAACTTTGTACTAGCTCTA 60.350 42.308 0.00 0.00 0.00 2.43
2430 2958 7.091443 GCTTCTCAACTTTGTACTAGCTCTAA 58.909 38.462 0.00 0.00 0.00 2.10
2431 2959 7.762159 GCTTCTCAACTTTGTACTAGCTCTAAT 59.238 37.037 0.00 0.00 0.00 1.73
2468 2996 5.665916 AAGCTCAGGACAATTATTTTGGG 57.334 39.130 0.00 0.00 0.00 4.12
2469 2997 4.934356 AGCTCAGGACAATTATTTTGGGA 58.066 39.130 0.00 0.00 0.00 4.37
2470 2998 5.522641 AGCTCAGGACAATTATTTTGGGAT 58.477 37.500 0.00 0.00 0.00 3.85
2471 2999 5.361857 AGCTCAGGACAATTATTTTGGGATG 59.638 40.000 0.00 0.00 0.00 3.51
2472 3000 5.452356 GCTCAGGACAATTATTTTGGGATGG 60.452 44.000 0.00 0.00 0.00 3.51
2473 3001 5.836705 TCAGGACAATTATTTTGGGATGGA 58.163 37.500 0.00 0.00 0.00 3.41
2474 3002 5.893255 TCAGGACAATTATTTTGGGATGGAG 59.107 40.000 0.00 0.00 0.00 3.86
2475 3003 5.069516 CAGGACAATTATTTTGGGATGGAGG 59.930 44.000 0.00 0.00 0.00 4.30
2476 3004 4.344968 GGACAATTATTTTGGGATGGAGGG 59.655 45.833 0.00 0.00 0.00 4.30
2477 3005 5.208121 GACAATTATTTTGGGATGGAGGGA 58.792 41.667 0.00 0.00 0.00 4.20
2478 3006 5.211201 ACAATTATTTTGGGATGGAGGGAG 58.789 41.667 0.00 0.00 0.00 4.30
2479 3007 5.211201 CAATTATTTTGGGATGGAGGGAGT 58.789 41.667 0.00 0.00 0.00 3.85
2480 3008 6.068498 ACAATTATTTTGGGATGGAGGGAGTA 60.068 38.462 0.00 0.00 0.00 2.59
2552 3097 5.385035 CCAATTGGAATTGCTGTTGCAGAG 61.385 45.833 20.50 0.00 43.83 3.35
2559 3104 1.373999 GCTGTTGCAGAGCGAGAGT 60.374 57.895 4.23 0.00 35.97 3.24
2642 3193 0.686112 CAGTGGTCTCCTCCTCCTCC 60.686 65.000 0.00 0.00 0.00 4.30
2643 3194 0.853586 AGTGGTCTCCTCCTCCTCCT 60.854 60.000 0.00 0.00 0.00 3.69
2644 3195 0.396556 GTGGTCTCCTCCTCCTCCTC 60.397 65.000 0.00 0.00 0.00 3.71
2645 3196 1.231928 GGTCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
2647 3198 0.185175 GTCTCCTCCTCCTCCTCCTC 59.815 65.000 0.00 0.00 0.00 3.71
2648 3199 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
2649 3200 1.230650 TCCTCCTCCTCCTCCTCCA 60.231 63.158 0.00 0.00 0.00 3.86
2650 3201 1.232792 CCTCCTCCTCCTCCTCCAG 59.767 68.421 0.00 0.00 0.00 3.86
2651 3202 1.457455 CTCCTCCTCCTCCTCCAGC 60.457 68.421 0.00 0.00 0.00 4.85
2652 3203 2.445654 CCTCCTCCTCCTCCAGCC 60.446 72.222 0.00 0.00 0.00 4.85
2740 3314 2.034879 ATCAAGTGGCGCGTGGAAG 61.035 57.895 13.81 0.00 0.00 3.46
2746 3320 3.431725 GGCGCGTGGAAGGGAAAG 61.432 66.667 8.43 0.00 0.00 2.62
2754 3328 2.351738 CGTGGAAGGGAAAGTGCAATTC 60.352 50.000 0.00 2.15 0.00 2.17
2757 3331 3.966665 TGGAAGGGAAAGTGCAATTCTTT 59.033 39.130 0.00 0.00 37.75 2.52
2788 3365 2.517959 TGAGGGAAGGAAAAGTGCATG 58.482 47.619 0.00 0.00 0.00 4.06
2806 3383 2.724520 GCTTAGGGCATCCATGGTG 58.275 57.895 12.58 10.59 41.35 4.17
2807 3384 0.106519 GCTTAGGGCATCCATGGTGT 60.107 55.000 12.58 0.00 41.35 4.16
2808 3385 1.686115 GCTTAGGGCATCCATGGTGTT 60.686 52.381 12.58 0.00 41.35 3.32
2809 3386 2.026641 CTTAGGGCATCCATGGTGTTG 58.973 52.381 12.58 9.46 34.83 3.33
2810 3387 1.294041 TAGGGCATCCATGGTGTTGA 58.706 50.000 12.58 0.00 34.83 3.18
2811 3388 0.632835 AGGGCATCCATGGTGTTGAT 59.367 50.000 12.58 0.00 34.83 2.57
2812 3389 0.748450 GGGCATCCATGGTGTTGATG 59.252 55.000 12.58 8.80 39.07 3.07
2813 3390 1.685803 GGGCATCCATGGTGTTGATGA 60.686 52.381 12.58 0.00 38.49 2.92
2814 3391 2.313317 GGCATCCATGGTGTTGATGAT 58.687 47.619 12.58 0.00 38.49 2.45
2815 3392 2.035449 GGCATCCATGGTGTTGATGATG 59.965 50.000 12.58 6.53 38.49 3.07
2816 3393 2.035449 GCATCCATGGTGTTGATGATGG 59.965 50.000 12.58 0.00 38.49 3.51
2817 3394 3.293337 CATCCATGGTGTTGATGATGGT 58.707 45.455 12.58 0.00 38.49 3.55
2818 3395 2.725637 TCCATGGTGTTGATGATGGTG 58.274 47.619 12.58 0.00 37.28 4.17
2819 3396 1.135527 CCATGGTGTTGATGATGGTGC 59.864 52.381 2.57 0.00 32.20 5.01
2820 3397 1.135527 CATGGTGTTGATGATGGTGCC 59.864 52.381 0.00 0.00 0.00 5.01
2821 3398 0.112025 TGGTGTTGATGATGGTGCCA 59.888 50.000 0.00 0.00 0.00 4.92
2822 3399 0.527565 GGTGTTGATGATGGTGCCAC 59.472 55.000 0.00 0.00 0.00 5.01
2823 3400 0.168788 GTGTTGATGATGGTGCCACG 59.831 55.000 0.00 0.00 0.00 4.94
2824 3401 0.250684 TGTTGATGATGGTGCCACGT 60.251 50.000 0.00 0.00 0.00 4.49
2825 3402 1.002544 TGTTGATGATGGTGCCACGTA 59.997 47.619 0.00 0.00 0.00 3.57
2826 3403 1.396996 GTTGATGATGGTGCCACGTAC 59.603 52.381 0.00 0.00 0.00 3.67
2827 3404 0.901827 TGATGATGGTGCCACGTACT 59.098 50.000 0.00 0.00 0.00 2.73
2828 3405 2.104170 TGATGATGGTGCCACGTACTA 58.896 47.619 0.00 0.00 0.00 1.82
2829 3406 2.100749 TGATGATGGTGCCACGTACTAG 59.899 50.000 0.00 0.00 0.00 2.57
2830 3407 0.174845 TGATGGTGCCACGTACTAGC 59.825 55.000 0.00 0.00 0.00 3.42
2831 3408 0.174845 GATGGTGCCACGTACTAGCA 59.825 55.000 0.00 0.00 0.00 3.49
2832 3409 0.830648 ATGGTGCCACGTACTAGCAT 59.169 50.000 5.24 4.89 39.04 3.79
2833 3410 0.611200 TGGTGCCACGTACTAGCATT 59.389 50.000 5.24 0.00 39.04 3.56
2834 3411 1.002659 TGGTGCCACGTACTAGCATTT 59.997 47.619 5.24 0.00 39.04 2.32
2835 3412 1.396996 GGTGCCACGTACTAGCATTTG 59.603 52.381 5.24 0.00 39.04 2.32
2836 3413 1.396996 GTGCCACGTACTAGCATTTGG 59.603 52.381 5.24 0.00 39.04 3.28
2837 3414 0.377203 GCCACGTACTAGCATTTGGC 59.623 55.000 9.54 9.54 42.57 4.52
2849 3426 3.214696 GCATTTGGCACTATACTCCCT 57.785 47.619 0.00 0.00 43.97 4.20
2850 3427 3.142174 GCATTTGGCACTATACTCCCTC 58.858 50.000 0.00 0.00 43.97 4.30
2851 3428 3.744660 CATTTGGCACTATACTCCCTCC 58.255 50.000 0.00 0.00 0.00 4.30
2852 3429 2.561209 TTGGCACTATACTCCCTCCA 57.439 50.000 0.00 0.00 0.00 3.86
2853 3430 2.795291 TGGCACTATACTCCCTCCAT 57.205 50.000 0.00 0.00 0.00 3.41
2854 3431 3.060479 TGGCACTATACTCCCTCCATT 57.940 47.619 0.00 0.00 0.00 3.16
2855 3432 3.393687 TGGCACTATACTCCCTCCATTT 58.606 45.455 0.00 0.00 0.00 2.32
2856 3433 3.391296 TGGCACTATACTCCCTCCATTTC 59.609 47.826 0.00 0.00 0.00 2.17
2857 3434 3.391296 GGCACTATACTCCCTCCATTTCA 59.609 47.826 0.00 0.00 0.00 2.69
2858 3435 4.042187 GGCACTATACTCCCTCCATTTCAT 59.958 45.833 0.00 0.00 0.00 2.57
2859 3436 5.456763 GGCACTATACTCCCTCCATTTCATT 60.457 44.000 0.00 0.00 0.00 2.57
2860 3437 6.064717 GCACTATACTCCCTCCATTTCATTT 58.935 40.000 0.00 0.00 0.00 2.32
2861 3438 6.205658 GCACTATACTCCCTCCATTTCATTTC 59.794 42.308 0.00 0.00 0.00 2.17
2862 3439 7.282585 CACTATACTCCCTCCATTTCATTTCA 58.717 38.462 0.00 0.00 0.00 2.69
2863 3440 7.941238 CACTATACTCCCTCCATTTCATTTCAT 59.059 37.037 0.00 0.00 0.00 2.57
2864 3441 9.170890 ACTATACTCCCTCCATTTCATTTCATA 57.829 33.333 0.00 0.00 0.00 2.15
2868 3445 8.697507 ACTCCCTCCATTTCATTTCATAATAC 57.302 34.615 0.00 0.00 0.00 1.89
2869 3446 8.281531 ACTCCCTCCATTTCATTTCATAATACA 58.718 33.333 0.00 0.00 0.00 2.29
2870 3447 8.696043 TCCCTCCATTTCATTTCATAATACAG 57.304 34.615 0.00 0.00 0.00 2.74
2871 3448 8.281531 TCCCTCCATTTCATTTCATAATACAGT 58.718 33.333 0.00 0.00 0.00 3.55
2872 3449 8.355169 CCCTCCATTTCATTTCATAATACAGTG 58.645 37.037 0.00 0.00 0.00 3.66
2873 3450 8.906867 CCTCCATTTCATTTCATAATACAGTGT 58.093 33.333 0.00 0.00 0.00 3.55
2888 3465 9.959721 ATAATACAGTGTACTCTTTTCATTGGT 57.040 29.630 4.80 0.00 0.00 3.67
2890 3467 9.959721 AATACAGTGTACTCTTTTCATTGGTAT 57.040 29.630 4.80 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.141482 ACGAATGACATGGCCTTACCTTAT 60.141 41.667 3.32 0.00 40.22 1.73
51 52 1.466360 GCTTGTGACGAATGACATGGC 60.466 52.381 0.00 0.00 0.00 4.40
56 57 1.654105 CTACCGCTTGTGACGAATGAC 59.346 52.381 0.00 0.00 0.00 3.06
63 64 1.375523 CCACCCTACCGCTTGTGAC 60.376 63.158 0.00 0.00 0.00 3.67
77 78 1.433837 CTAATAACCGCCACGCCACC 61.434 60.000 0.00 0.00 0.00 4.61
104 105 0.818296 CCAGGTCTCAGGTACGAAGG 59.182 60.000 0.00 0.00 0.00 3.46
107 108 0.113776 AACCCAGGTCTCAGGTACGA 59.886 55.000 0.00 0.00 32.21 3.43
109 110 1.640917 TGAACCCAGGTCTCAGGTAC 58.359 55.000 0.00 0.00 32.21 3.34
121 128 1.702957 AGAGAACCGGATTTGAACCCA 59.297 47.619 9.46 0.00 0.00 4.51
128 135 3.808834 AAAAGGGAGAGAACCGGATTT 57.191 42.857 9.46 0.00 0.00 2.17
130 137 2.913617 AGAAAAAGGGAGAGAACCGGAT 59.086 45.455 9.46 0.00 0.00 4.18
134 141 5.565509 AGAATGAGAAAAAGGGAGAGAACC 58.434 41.667 0.00 0.00 0.00 3.62
136 143 6.694445 AGAGAATGAGAAAAAGGGAGAGAA 57.306 37.500 0.00 0.00 0.00 2.87
138 145 7.167535 AGAAAGAGAATGAGAAAAAGGGAGAG 58.832 38.462 0.00 0.00 0.00 3.20
143 150 9.500785 AGAAGTAGAAAGAGAATGAGAAAAAGG 57.499 33.333 0.00 0.00 0.00 3.11
145 152 9.495572 GGAGAAGTAGAAAGAGAATGAGAAAAA 57.504 33.333 0.00 0.00 0.00 1.94
159 169 7.511028 AGAGAAAAGGAGAAGGAGAAGTAGAAA 59.489 37.037 0.00 0.00 0.00 2.52
164 174 4.530553 GGAGAGAAAAGGAGAAGGAGAAGT 59.469 45.833 0.00 0.00 0.00 3.01
209 240 2.629617 CTGGGCCAGAACTGAAAACATT 59.370 45.455 29.96 0.00 32.44 2.71
213 244 0.185901 AGCTGGGCCAGAACTGAAAA 59.814 50.000 37.07 0.00 32.44 2.29
222 253 3.567478 AAAATAGAGTAGCTGGGCCAG 57.433 47.619 29.44 29.44 34.12 4.85
430 461 6.642707 ATGGTAAACCGACATTTTCAGAAA 57.357 33.333 0.00 0.00 39.43 2.52
433 464 6.007936 TCAATGGTAAACCGACATTTTCAG 57.992 37.500 0.00 0.00 39.43 3.02
503 534 5.422145 GCAAAAAGCATAAGGTTGGATGAT 58.578 37.500 0.00 0.00 44.79 2.45
512 543 3.428534 GGTGTTTCGCAAAAAGCATAAGG 59.571 43.478 0.00 0.00 46.13 2.69
543 574 1.851666 GATGCCACACAACAAACAACG 59.148 47.619 0.00 0.00 0.00 4.10
578 609 2.614057 CCTTACAACATCAGCGAATCCC 59.386 50.000 0.00 0.00 0.00 3.85
637 668 0.836400 TGAGTGTGGGAGGGAGGAAC 60.836 60.000 0.00 0.00 0.00 3.62
682 714 0.458543 CTAGTGTAGTGTGGCGGCAG 60.459 60.000 13.91 0.00 0.00 4.85
686 718 4.430137 TTTACTCTAGTGTAGTGTGGCG 57.570 45.455 4.93 0.00 34.65 5.69
689 721 8.827177 TTGGAATTTTACTCTAGTGTAGTGTG 57.173 34.615 4.93 0.00 34.65 3.82
695 727 6.204108 CGGTGTTTGGAATTTTACTCTAGTGT 59.796 38.462 2.57 2.57 0.00 3.55
708 745 1.202758 TGAGCTGTCGGTGTTTGGAAT 60.203 47.619 0.00 0.00 0.00 3.01
709 746 0.179234 TGAGCTGTCGGTGTTTGGAA 59.821 50.000 0.00 0.00 0.00 3.53
805 844 2.143925 GTACAGTGAAAGAGTGGTGGC 58.856 52.381 0.00 0.00 0.00 5.01
905 960 6.377429 TGGAGAGGATATTGGTGTACGATATC 59.623 42.308 0.00 6.18 46.05 1.63
942 1013 1.815421 GGCAGTGATGGTAGCACCG 60.815 63.158 0.00 0.00 42.58 4.94
943 1014 1.026718 GTGGCAGTGATGGTAGCACC 61.027 60.000 0.00 0.00 39.22 5.01
944 1015 0.036010 AGTGGCAGTGATGGTAGCAC 60.036 55.000 0.00 0.00 36.53 4.40
945 1016 0.250234 GAGTGGCAGTGATGGTAGCA 59.750 55.000 0.00 0.00 0.00 3.49
946 1017 0.462759 GGAGTGGCAGTGATGGTAGC 60.463 60.000 0.00 0.00 0.00 3.58
947 1018 0.179100 CGGAGTGGCAGTGATGGTAG 60.179 60.000 0.00 0.00 0.00 3.18
948 1019 0.902984 ACGGAGTGGCAGTGATGGTA 60.903 55.000 0.00 0.00 42.51 3.25
949 1020 2.217038 ACGGAGTGGCAGTGATGGT 61.217 57.895 0.00 0.00 42.51 3.55
950 1021 2.665000 ACGGAGTGGCAGTGATGG 59.335 61.111 0.00 0.00 42.51 3.51
1572 1659 2.362503 AGGTCTCGCCGGACATCA 60.363 61.111 5.05 0.00 43.70 3.07
1584 1671 1.299976 GTTTGGGATGCCGAGGTCT 59.700 57.895 0.00 0.00 0.00 3.85
1640 1756 1.949525 CAGATTAATGGAGTTGGCCGG 59.050 52.381 0.00 0.00 0.00 6.13
1680 1819 2.441164 ACCTGCACGGCCAAAACA 60.441 55.556 2.24 0.00 35.61 2.83
1848 2005 3.849951 TCGGCGAGCATCTTCCCC 61.850 66.667 4.99 0.00 0.00 4.81
1895 2052 8.455903 AATCACTAATCATGGTTACTGGATTG 57.544 34.615 11.27 0.00 32.62 2.67
1901 2058 6.701841 CGCACTAATCACTAATCATGGTTACT 59.298 38.462 0.00 0.00 0.00 2.24
1902 2059 6.479001 ACGCACTAATCACTAATCATGGTTAC 59.521 38.462 0.00 0.00 0.00 2.50
1903 2060 6.478673 CACGCACTAATCACTAATCATGGTTA 59.521 38.462 0.00 0.00 0.00 2.85
1904 2061 5.294306 CACGCACTAATCACTAATCATGGTT 59.706 40.000 0.00 0.00 0.00 3.67
1905 2062 4.811024 CACGCACTAATCACTAATCATGGT 59.189 41.667 0.00 0.00 0.00 3.55
1906 2063 4.811024 ACACGCACTAATCACTAATCATGG 59.189 41.667 0.00 0.00 0.00 3.66
1907 2064 5.731278 CACACGCACTAATCACTAATCATG 58.269 41.667 0.00 0.00 0.00 3.07
1908 2065 4.271049 GCACACGCACTAATCACTAATCAT 59.729 41.667 0.00 0.00 38.36 2.45
1909 2066 3.616821 GCACACGCACTAATCACTAATCA 59.383 43.478 0.00 0.00 38.36 2.57
1910 2067 3.001330 GGCACACGCACTAATCACTAATC 59.999 47.826 0.00 0.00 41.24 1.75
1911 2068 2.936498 GGCACACGCACTAATCACTAAT 59.064 45.455 0.00 0.00 41.24 1.73
1912 2069 2.028476 AGGCACACGCACTAATCACTAA 60.028 45.455 0.00 0.00 41.24 2.24
1913 2070 1.548719 AGGCACACGCACTAATCACTA 59.451 47.619 0.00 0.00 41.24 2.74
1979 2152 9.337396 GGATCAGTGATAGTATATGGACTAGAG 57.663 40.741 5.38 0.00 35.42 2.43
1981 2154 7.254966 GCGGATCAGTGATAGTATATGGACTAG 60.255 44.444 5.38 0.00 35.42 2.57
1982 2155 6.542735 GCGGATCAGTGATAGTATATGGACTA 59.457 42.308 5.38 0.00 36.38 2.59
1983 2156 5.358442 GCGGATCAGTGATAGTATATGGACT 59.642 44.000 5.38 0.00 0.00 3.85
1984 2157 5.358442 AGCGGATCAGTGATAGTATATGGAC 59.642 44.000 5.38 0.00 0.00 4.02
1985 2158 5.510430 AGCGGATCAGTGATAGTATATGGA 58.490 41.667 5.38 0.00 0.00 3.41
1986 2159 5.358160 TGAGCGGATCAGTGATAGTATATGG 59.642 44.000 5.38 0.00 32.77 2.74
1988 2161 6.887002 TCTTGAGCGGATCAGTGATAGTATAT 59.113 38.462 5.38 0.00 39.68 0.86
1989 2162 6.238648 TCTTGAGCGGATCAGTGATAGTATA 58.761 40.000 5.38 0.00 39.68 1.47
1990 2163 5.073428 TCTTGAGCGGATCAGTGATAGTAT 58.927 41.667 5.38 0.00 39.68 2.12
1991 2164 4.461198 TCTTGAGCGGATCAGTGATAGTA 58.539 43.478 5.38 0.00 39.68 1.82
1992 2165 3.291584 TCTTGAGCGGATCAGTGATAGT 58.708 45.455 5.38 0.00 39.68 2.12
1994 2167 3.291584 ACTCTTGAGCGGATCAGTGATA 58.708 45.455 5.38 0.00 39.68 2.15
1995 2168 2.106566 ACTCTTGAGCGGATCAGTGAT 58.893 47.619 4.98 4.98 39.68 3.06
1997 2170 2.376808 AACTCTTGAGCGGATCAGTG 57.623 50.000 0.00 0.00 39.68 3.66
1998 2171 2.613977 CCAAACTCTTGAGCGGATCAGT 60.614 50.000 0.00 0.00 39.68 3.41
1999 2172 2.005451 CCAAACTCTTGAGCGGATCAG 58.995 52.381 0.00 0.00 39.68 2.90
2039 2223 2.010145 TCAGCCACTTAATCTGCGAC 57.990 50.000 0.00 0.00 0.00 5.19
2041 2225 2.554142 TCATCAGCCACTTAATCTGCG 58.446 47.619 0.00 0.00 0.00 5.18
2042 2226 4.637534 TCTTTCATCAGCCACTTAATCTGC 59.362 41.667 0.00 0.00 0.00 4.26
2066 2250 8.484214 TGCTAATACAGACTGATTAAGGAGAT 57.516 34.615 10.08 0.00 0.00 2.75
2070 2254 6.283694 TGCTGCTAATACAGACTGATTAAGG 58.716 40.000 10.08 0.86 40.25 2.69
2077 2261 2.864946 CTGCTGCTGCTAATACAGACTG 59.135 50.000 17.00 0.00 40.25 3.51
2096 2293 0.529337 ATGCTACTACGCTGCTGCTG 60.529 55.000 14.03 9.56 36.97 4.41
2098 2295 0.807667 ACATGCTACTACGCTGCTGC 60.808 55.000 5.34 5.34 0.00 5.25
2099 2296 0.926155 CACATGCTACTACGCTGCTG 59.074 55.000 0.00 0.00 0.00 4.41
2100 2297 0.532573 ACACATGCTACTACGCTGCT 59.467 50.000 0.00 0.00 0.00 4.24
2101 2298 0.647410 CACACATGCTACTACGCTGC 59.353 55.000 0.00 0.00 0.00 5.25
2102 2299 1.920574 GACACACATGCTACTACGCTG 59.079 52.381 0.00 0.00 0.00 5.18
2103 2300 1.544246 TGACACACATGCTACTACGCT 59.456 47.619 0.00 0.00 0.00 5.07
2105 2302 2.530177 CCTGACACACATGCTACTACG 58.470 52.381 0.00 0.00 0.00 3.51
2106 2303 2.093973 AGCCTGACACACATGCTACTAC 60.094 50.000 0.00 0.00 45.74 2.73
2107 2304 2.179427 AGCCTGACACACATGCTACTA 58.821 47.619 0.00 0.00 45.74 1.82
2108 2305 0.979665 AGCCTGACACACATGCTACT 59.020 50.000 0.00 0.00 45.74 2.57
2109 2306 3.540211 AGCCTGACACACATGCTAC 57.460 52.632 0.00 0.00 45.74 3.58
2112 2309 2.042831 GGGAGCCTGACACACATGC 61.043 63.158 0.00 0.00 39.74 4.06
2113 2310 0.250858 TTGGGAGCCTGACACACATG 60.251 55.000 0.00 0.00 0.00 3.21
2114 2311 0.478072 TTTGGGAGCCTGACACACAT 59.522 50.000 0.00 0.00 0.00 3.21
2115 2312 0.179020 CTTTGGGAGCCTGACACACA 60.179 55.000 0.00 0.00 0.00 3.72
2118 2315 0.329596 ATCCTTTGGGAGCCTGACAC 59.670 55.000 0.00 0.00 45.86 3.67
2136 2340 6.548622 AGCAATAATCTGGTAATCAGTTGCAT 59.451 34.615 15.04 3.41 45.92 3.96
2170 2458 8.894864 CGTACATACACAAATGCATAAATCATG 58.105 33.333 0.00 2.77 37.73 3.07
2171 2459 8.075574 CCGTACATACACAAATGCATAAATCAT 58.924 33.333 0.00 0.00 0.00 2.45
2172 2460 7.066404 ACCGTACATACACAAATGCATAAATCA 59.934 33.333 0.00 0.00 0.00 2.57
2173 2461 7.375808 CACCGTACATACACAAATGCATAAATC 59.624 37.037 0.00 0.00 0.00 2.17
2174 2462 7.192913 CACCGTACATACACAAATGCATAAAT 58.807 34.615 0.00 0.00 0.00 1.40
2175 2463 6.547283 CACCGTACATACACAAATGCATAAA 58.453 36.000 0.00 0.00 0.00 1.40
2176 2464 5.447954 GCACCGTACATACACAAATGCATAA 60.448 40.000 0.00 0.00 0.00 1.90
2186 2709 1.274596 CTTCGGCACCGTACATACAC 58.725 55.000 9.23 0.00 40.74 2.90
2195 2718 2.726691 CGCAGTAACTTCGGCACCG 61.727 63.158 1.73 1.73 41.35 4.94
2197 2720 0.989890 CTACGCAGTAACTTCGGCAC 59.010 55.000 0.00 0.00 45.13 5.01
2199 2722 2.205307 ATCTACGCAGTAACTTCGGC 57.795 50.000 0.00 0.00 45.13 5.54
2200 2723 6.823678 AAATAATCTACGCAGTAACTTCGG 57.176 37.500 0.00 0.00 45.13 4.30
2201 2724 8.592998 AGAAAAATAATCTACGCAGTAACTTCG 58.407 33.333 0.00 0.00 45.13 3.79
2204 2727 8.880750 GGAAGAAAAATAATCTACGCAGTAACT 58.119 33.333 0.00 0.00 45.13 2.24
2205 2728 7.844653 CGGAAGAAAAATAATCTACGCAGTAAC 59.155 37.037 0.00 0.00 45.13 2.50
2206 2729 7.546667 ACGGAAGAAAAATAATCTACGCAGTAA 59.453 33.333 0.00 0.00 45.13 2.24
2207 2730 7.037438 ACGGAAGAAAAATAATCTACGCAGTA 58.963 34.615 0.00 0.00 45.11 2.74
2209 2732 6.255887 AGACGGAAGAAAAATAATCTACGCAG 59.744 38.462 0.00 0.00 33.41 5.18
2210 2733 6.103997 AGACGGAAGAAAAATAATCTACGCA 58.896 36.000 0.00 0.00 33.41 5.24
2211 2734 6.585389 AGACGGAAGAAAAATAATCTACGC 57.415 37.500 0.00 0.00 33.41 4.42
2212 2735 9.298774 AGTAAGACGGAAGAAAAATAATCTACG 57.701 33.333 0.00 0.00 35.12 3.51
2217 2740 9.908152 CCAAAAGTAAGACGGAAGAAAAATAAT 57.092 29.630 0.00 0.00 0.00 1.28
2218 2741 8.905850 ACCAAAAGTAAGACGGAAGAAAAATAA 58.094 29.630 0.00 0.00 0.00 1.40
2219 2742 8.454570 ACCAAAAGTAAGACGGAAGAAAAATA 57.545 30.769 0.00 0.00 0.00 1.40
2220 2743 7.342769 ACCAAAAGTAAGACGGAAGAAAAAT 57.657 32.000 0.00 0.00 0.00 1.82
2221 2744 6.762702 ACCAAAAGTAAGACGGAAGAAAAA 57.237 33.333 0.00 0.00 0.00 1.94
2250 2773 5.163513 CCAGCTGGCTTTACATTTTACAAG 58.836 41.667 22.33 0.00 0.00 3.16
2251 2774 4.021544 CCCAGCTGGCTTTACATTTTACAA 60.022 41.667 28.39 0.00 0.00 2.41
2252 2775 3.509575 CCCAGCTGGCTTTACATTTTACA 59.490 43.478 28.39 0.00 0.00 2.41
2253 2776 4.110036 CCCAGCTGGCTTTACATTTTAC 57.890 45.455 28.39 0.00 0.00 2.01
2316 2841 7.532682 TGCACCAATTTTTCTTTTCAGTAAC 57.467 32.000 0.00 0.00 0.00 2.50
2344 2872 2.025981 AGATAACACTGATTGGCTGGCA 60.026 45.455 0.00 0.00 0.00 4.92
2345 2873 2.615912 GAGATAACACTGATTGGCTGGC 59.384 50.000 0.00 0.00 0.00 4.85
2346 2874 2.868583 CGAGATAACACTGATTGGCTGG 59.131 50.000 0.00 0.00 0.00 4.85
2360 2888 1.865655 GCGCAGTGCAGATCGAGATAA 60.866 52.381 16.83 0.00 45.45 1.75
2361 2889 0.318191 GCGCAGTGCAGATCGAGATA 60.318 55.000 16.83 0.00 45.45 1.98
2362 2890 1.591059 GCGCAGTGCAGATCGAGAT 60.591 57.895 16.83 0.00 45.45 2.75
2363 2891 2.202663 GCGCAGTGCAGATCGAGA 60.203 61.111 16.83 0.00 45.45 4.04
2442 2970 8.260114 CCCAAAATAATTGTCCTGAGCTTAAAT 58.740 33.333 0.00 0.00 0.00 1.40
2443 2971 7.453126 TCCCAAAATAATTGTCCTGAGCTTAAA 59.547 33.333 0.00 0.00 0.00 1.52
2444 2972 6.951198 TCCCAAAATAATTGTCCTGAGCTTAA 59.049 34.615 0.00 0.00 0.00 1.85
2445 2973 6.489603 TCCCAAAATAATTGTCCTGAGCTTA 58.510 36.000 0.00 0.00 0.00 3.09
2446 2974 5.332743 TCCCAAAATAATTGTCCTGAGCTT 58.667 37.500 0.00 0.00 0.00 3.74
2447 2975 4.934356 TCCCAAAATAATTGTCCTGAGCT 58.066 39.130 0.00 0.00 0.00 4.09
2448 2976 5.452356 CCATCCCAAAATAATTGTCCTGAGC 60.452 44.000 0.00 0.00 0.00 4.26
2449 2977 5.893255 TCCATCCCAAAATAATTGTCCTGAG 59.107 40.000 0.00 0.00 0.00 3.35
2450 2978 5.836705 TCCATCCCAAAATAATTGTCCTGA 58.163 37.500 0.00 0.00 0.00 3.86
2451 2979 5.069516 CCTCCATCCCAAAATAATTGTCCTG 59.930 44.000 0.00 0.00 0.00 3.86
2452 2980 5.211201 CCTCCATCCCAAAATAATTGTCCT 58.789 41.667 0.00 0.00 0.00 3.85
2453 2981 4.344968 CCCTCCATCCCAAAATAATTGTCC 59.655 45.833 0.00 0.00 0.00 4.02
2454 2982 5.208121 TCCCTCCATCCCAAAATAATTGTC 58.792 41.667 0.00 0.00 0.00 3.18
2455 2983 5.211201 CTCCCTCCATCCCAAAATAATTGT 58.789 41.667 0.00 0.00 0.00 2.71
2456 2984 5.211201 ACTCCCTCCATCCCAAAATAATTG 58.789 41.667 0.00 0.00 0.00 2.32
2457 2985 5.487861 ACTCCCTCCATCCCAAAATAATT 57.512 39.130 0.00 0.00 0.00 1.40
2458 2986 5.676811 ACTACTCCCTCCATCCCAAAATAAT 59.323 40.000 0.00 0.00 0.00 1.28
2459 2987 5.043762 ACTACTCCCTCCATCCCAAAATAA 58.956 41.667 0.00 0.00 0.00 1.40
2460 2988 4.641868 ACTACTCCCTCCATCCCAAAATA 58.358 43.478 0.00 0.00 0.00 1.40
2461 2989 3.474920 ACTACTCCCTCCATCCCAAAAT 58.525 45.455 0.00 0.00 0.00 1.82
2462 2990 2.929301 ACTACTCCCTCCATCCCAAAA 58.071 47.619 0.00 0.00 0.00 2.44
2463 2991 2.661176 ACTACTCCCTCCATCCCAAA 57.339 50.000 0.00 0.00 0.00 3.28
2464 2992 2.590611 AGTACTACTCCCTCCATCCCAA 59.409 50.000 0.00 0.00 0.00 4.12
2465 2993 2.091278 CAGTACTACTCCCTCCATCCCA 60.091 54.545 0.00 0.00 0.00 4.37
2466 2994 2.599677 CAGTACTACTCCCTCCATCCC 58.400 57.143 0.00 0.00 0.00 3.85
2467 2995 2.177233 TCCAGTACTACTCCCTCCATCC 59.823 54.545 0.00 0.00 0.00 3.51
2468 2996 3.596940 TCCAGTACTACTCCCTCCATC 57.403 52.381 0.00 0.00 0.00 3.51
2469 2997 3.012502 TGTTCCAGTACTACTCCCTCCAT 59.987 47.826 0.00 0.00 0.00 3.41
2470 2998 2.380932 TGTTCCAGTACTACTCCCTCCA 59.619 50.000 0.00 0.00 0.00 3.86
2471 2999 3.097342 TGTTCCAGTACTACTCCCTCC 57.903 52.381 0.00 0.00 0.00 4.30
2472 3000 4.024670 ACATGTTCCAGTACTACTCCCTC 58.975 47.826 0.00 0.00 0.00 4.30
2473 3001 3.769844 CACATGTTCCAGTACTACTCCCT 59.230 47.826 0.00 0.00 0.00 4.20
2474 3002 3.767673 TCACATGTTCCAGTACTACTCCC 59.232 47.826 0.00 0.00 0.00 4.30
2475 3003 4.463186 AGTCACATGTTCCAGTACTACTCC 59.537 45.833 0.00 0.00 0.00 3.85
2476 3004 5.183331 TCAGTCACATGTTCCAGTACTACTC 59.817 44.000 0.00 0.00 0.00 2.59
2477 3005 5.047943 GTCAGTCACATGTTCCAGTACTACT 60.048 44.000 0.00 0.00 0.00 2.57
2478 3006 5.047943 AGTCAGTCACATGTTCCAGTACTAC 60.048 44.000 0.00 0.00 0.00 2.73
2479 3007 5.048013 CAGTCAGTCACATGTTCCAGTACTA 60.048 44.000 0.00 0.00 0.00 1.82
2480 3008 3.898123 AGTCAGTCACATGTTCCAGTACT 59.102 43.478 0.00 0.00 0.00 2.73
2552 3097 2.748605 CCTCCATGACATTACTCTCGC 58.251 52.381 0.00 0.00 0.00 5.03
2559 3104 0.918258 TGCCAGCCTCCATGACATTA 59.082 50.000 0.00 0.00 0.00 1.90
2584 3131 1.813896 CTGCGCAAATCATTACACCG 58.186 50.000 13.05 0.00 0.00 4.94
2642 3193 1.525923 CACATGAGGGCTGGAGGAG 59.474 63.158 0.00 0.00 0.00 3.69
2643 3194 2.673200 GCACATGAGGGCTGGAGGA 61.673 63.158 0.00 0.00 0.00 3.71
2644 3195 2.124403 GCACATGAGGGCTGGAGG 60.124 66.667 0.00 0.00 0.00 4.30
2645 3196 1.153208 GAGCACATGAGGGCTGGAG 60.153 63.158 14.20 0.00 41.22 3.86
2647 3198 1.451567 CAGAGCACATGAGGGCTGG 60.452 63.158 14.20 4.92 41.22 4.85
2648 3199 2.113433 GCAGAGCACATGAGGGCTG 61.113 63.158 14.20 9.97 41.22 4.85
2649 3200 1.849975 AAGCAGAGCACATGAGGGCT 61.850 55.000 0.00 5.25 44.48 5.19
2650 3201 0.964358 AAAGCAGAGCACATGAGGGC 60.964 55.000 0.00 0.00 0.00 5.19
2651 3202 0.809385 CAAAGCAGAGCACATGAGGG 59.191 55.000 0.00 0.00 0.00 4.30
2652 3203 0.170561 GCAAAGCAGAGCACATGAGG 59.829 55.000 0.00 0.00 0.00 3.86
2757 3331 7.180229 ACTTTTCCTTCCCTCAAAAGAAGAAAA 59.820 33.333 9.72 0.00 41.69 2.29
2773 3350 3.119352 CCCTAAGCATGCACTTTTCCTTC 60.119 47.826 21.98 0.00 0.00 3.46
2788 3365 0.106519 ACACCATGGATGCCCTAAGC 60.107 55.000 21.47 0.00 44.14 3.09
2803 3380 0.527565 GTGGCACCATCATCAACACC 59.472 55.000 6.29 0.00 0.00 4.16
2804 3381 0.168788 CGTGGCACCATCATCAACAC 59.831 55.000 12.86 0.00 0.00 3.32
2805 3382 0.250684 ACGTGGCACCATCATCAACA 60.251 50.000 12.86 0.00 0.00 3.33
2806 3383 1.396996 GTACGTGGCACCATCATCAAC 59.603 52.381 12.86 0.00 0.00 3.18
2807 3384 1.277842 AGTACGTGGCACCATCATCAA 59.722 47.619 12.86 0.00 0.00 2.57
2808 3385 0.901827 AGTACGTGGCACCATCATCA 59.098 50.000 12.86 0.00 0.00 3.07
2809 3386 2.743938 CTAGTACGTGGCACCATCATC 58.256 52.381 12.86 0.00 0.00 2.92
2810 3387 1.202533 GCTAGTACGTGGCACCATCAT 60.203 52.381 12.86 0.00 31.47 2.45
2811 3388 0.174845 GCTAGTACGTGGCACCATCA 59.825 55.000 12.86 0.00 31.47 3.07
2812 3389 0.174845 TGCTAGTACGTGGCACCATC 59.825 55.000 12.86 2.29 37.82 3.51
2813 3390 0.830648 ATGCTAGTACGTGGCACCAT 59.169 50.000 12.86 4.76 46.85 3.55
2814 3391 0.611200 AATGCTAGTACGTGGCACCA 59.389 50.000 12.86 2.26 46.85 4.17
2815 3392 1.396996 CAAATGCTAGTACGTGGCACC 59.603 52.381 12.86 0.00 46.85 5.01
2816 3393 1.396996 CCAAATGCTAGTACGTGGCAC 59.603 52.381 7.79 7.79 46.85 5.01
2818 3395 0.377203 GCCAAATGCTAGTACGTGGC 59.623 55.000 17.26 17.26 44.23 5.01
2819 3396 1.396996 GTGCCAAATGCTAGTACGTGG 59.603 52.381 0.00 7.12 42.00 4.94
2820 3397 2.346803 AGTGCCAAATGCTAGTACGTG 58.653 47.619 0.00 0.00 42.00 4.49
2821 3398 2.762535 AGTGCCAAATGCTAGTACGT 57.237 45.000 0.00 0.00 42.00 3.57
2822 3399 5.529791 AGTATAGTGCCAAATGCTAGTACG 58.470 41.667 0.00 0.00 42.00 3.67
2823 3400 5.927115 GGAGTATAGTGCCAAATGCTAGTAC 59.073 44.000 0.00 0.00 42.00 2.73
2824 3401 5.011738 GGGAGTATAGTGCCAAATGCTAGTA 59.988 44.000 12.97 0.00 42.00 1.82
2825 3402 4.202367 GGGAGTATAGTGCCAAATGCTAGT 60.202 45.833 12.97 0.00 42.00 2.57
2826 3403 4.040952 AGGGAGTATAGTGCCAAATGCTAG 59.959 45.833 19.27 0.00 42.00 3.42
2827 3404 3.973973 AGGGAGTATAGTGCCAAATGCTA 59.026 43.478 19.27 0.00 42.00 3.49
2828 3405 2.780010 AGGGAGTATAGTGCCAAATGCT 59.220 45.455 19.27 0.00 42.00 3.79
2829 3406 3.142174 GAGGGAGTATAGTGCCAAATGC 58.858 50.000 19.27 1.07 41.77 3.56
2830 3407 3.136443 TGGAGGGAGTATAGTGCCAAATG 59.864 47.826 19.27 0.00 0.00 2.32
2831 3408 3.393687 TGGAGGGAGTATAGTGCCAAAT 58.606 45.455 19.27 0.00 0.00 2.32
2832 3409 2.840511 TGGAGGGAGTATAGTGCCAAA 58.159 47.619 19.27 2.57 0.00 3.28
2833 3410 2.561209 TGGAGGGAGTATAGTGCCAA 57.439 50.000 19.27 2.91 0.00 4.52
2834 3411 2.795291 ATGGAGGGAGTATAGTGCCA 57.205 50.000 19.27 5.84 0.00 4.92
2835 3412 3.391296 TGAAATGGAGGGAGTATAGTGCC 59.609 47.826 10.05 10.05 0.00 5.01
2836 3413 4.689612 TGAAATGGAGGGAGTATAGTGC 57.310 45.455 0.00 0.00 0.00 4.40
2837 3414 7.282585 TGAAATGAAATGGAGGGAGTATAGTG 58.717 38.462 0.00 0.00 0.00 2.74
2838 3415 7.451731 TGAAATGAAATGGAGGGAGTATAGT 57.548 36.000 0.00 0.00 0.00 2.12
2842 3419 9.793259 GTATTATGAAATGAAATGGAGGGAGTA 57.207 33.333 0.00 0.00 0.00 2.59
2843 3420 8.281531 TGTATTATGAAATGAAATGGAGGGAGT 58.718 33.333 0.00 0.00 0.00 3.85
2844 3421 8.696043 TGTATTATGAAATGAAATGGAGGGAG 57.304 34.615 0.00 0.00 0.00 4.30
2845 3422 8.281531 ACTGTATTATGAAATGAAATGGAGGGA 58.718 33.333 0.00 0.00 0.00 4.20
2846 3423 8.355169 CACTGTATTATGAAATGAAATGGAGGG 58.645 37.037 0.00 0.00 0.00 4.30
2847 3424 8.906867 ACACTGTATTATGAAATGAAATGGAGG 58.093 33.333 0.00 0.00 0.00 4.30
2862 3439 9.959721 ACCAATGAAAAGAGTACACTGTATTAT 57.040 29.630 0.00 0.00 0.00 1.28
2864 3441 9.959721 ATACCAATGAAAAGAGTACACTGTATT 57.040 29.630 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.