Multiple sequence alignment - TraesCS5D01G569200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G569200 chr5D 100.000 6641 0 0 1 6641 565743102 565749742 0.000000e+00 12264
1 TraesCS5D01G569200 chr5D 97.437 1717 39 5 1208 2921 414562897 414564611 0.000000e+00 2922
2 TraesCS5D01G569200 chr5D 97.433 1714 40 3 1209 2921 124075552 124073842 0.000000e+00 2918
3 TraesCS5D01G569200 chr5D 97.259 1715 44 3 1209 2921 397900916 397899203 0.000000e+00 2904
4 TraesCS5D01G569200 chr5D 82.927 328 55 1 5216 5542 388109988 388110315 1.810000e-75 294
5 TraesCS5D01G569200 chr5D 78.799 283 51 6 6150 6429 472779657 472779933 1.470000e-41 182
6 TraesCS5D01G569200 chr7D 96.255 2163 79 2 2922 5083 546061035 546058874 0.000000e+00 3544
7 TraesCS5D01G569200 chr7D 97.261 1716 41 2 1209 2921 58523394 58521682 0.000000e+00 2904
8 TraesCS5D01G569200 chr7D 97.261 1716 37 6 1211 2921 240547219 240548929 0.000000e+00 2900
9 TraesCS5D01G569200 chr7D 94.771 153 8 0 1056 1208 546061183 546061031 8.610000e-59 239
10 TraesCS5D01G569200 chr7B 92.926 2163 150 3 2922 5083 71351550 71353710 0.000000e+00 3144
11 TraesCS5D01G569200 chr3D 97.843 1715 33 4 1209 2921 157391603 157389891 0.000000e+00 2959
12 TraesCS5D01G569200 chr3D 97.548 1713 34 5 1209 2919 157399098 157397392 0.000000e+00 2924
13 TraesCS5D01G569200 chr3D 97.313 1712 43 2 1210 2921 374337793 374339501 0.000000e+00 2904
14 TraesCS5D01G569200 chr4D 97.150 1719 42 6 1209 2925 58121817 58123530 0.000000e+00 2896
15 TraesCS5D01G569200 chr5B 88.920 2166 232 8 2922 5083 189160425 189158264 0.000000e+00 2663
16 TraesCS5D01G569200 chr5B 86.183 2164 293 6 2922 5082 533458743 533456583 0.000000e+00 2335
17 TraesCS5D01G569200 chr5B 89.776 802 46 15 5083 5853 707395227 707394431 0.000000e+00 994
18 TraesCS5D01G569200 chr5B 88.474 321 25 2 6061 6381 707393858 707393550 1.750000e-100 377
19 TraesCS5D01G569200 chr5B 92.337 261 16 3 217 475 707397485 707397227 1.050000e-97 368
20 TraesCS5D01G569200 chr5B 94.059 202 11 1 1 201 707397730 707397529 8.370000e-79 305
21 TraesCS5D01G569200 chr5B 92.045 176 10 2 762 933 707396510 707396335 1.850000e-60 244
22 TraesCS5D01G569200 chr5B 88.272 162 19 0 5849 6010 707394196 707394035 1.890000e-45 195
23 TraesCS5D01G569200 chr5B 86.452 155 15 5 1055 1208 189160570 189160421 1.480000e-36 165
24 TraesCS5D01G569200 chr5B 91.129 124 3 1 924 1047 707395340 707395225 1.920000e-35 161
25 TraesCS5D01G569200 chr4A 88.786 2167 241 2 2918 5083 440256094 440258259 0.000000e+00 2654
26 TraesCS5D01G569200 chr4A 90.512 527 40 8 217 737 607292491 607293013 0.000000e+00 688
27 TraesCS5D01G569200 chr4A 86.624 157 17 4 1054 1208 454779813 454779659 3.180000e-38 171
28 TraesCS5D01G569200 chr4A 88.496 113 9 2 1 111 607291444 607291554 4.180000e-27 134
29 TraesCS5D01G569200 chr3A 87.581 2166 259 10 2922 5083 719113494 719115653 0.000000e+00 2501
30 TraesCS5D01G569200 chr3A 87.431 2164 264 8 2922 5083 130895769 130893612 0.000000e+00 2483
31 TraesCS5D01G569200 chr3A 80.938 320 57 3 5223 5540 46841520 46841837 3.980000e-62 250
32 TraesCS5D01G569200 chr7A 90.101 1889 180 5 2922 4808 46221329 46219446 0.000000e+00 2446
33 TraesCS5D01G569200 chr6B 87.015 2164 275 5 2922 5083 33523223 33521064 0.000000e+00 2435
34 TraesCS5D01G569200 chr6B 87.037 162 15 6 1050 1208 129761147 129761305 1.900000e-40 178
35 TraesCS5D01G569200 chr1B 85.583 326 46 1 5216 5540 330991683 330992008 2.290000e-89 340
36 TraesCS5D01G569200 chr1A 85.583 326 46 1 5216 5540 300577204 300577529 2.290000e-89 340
37 TraesCS5D01G569200 chr1A 84.985 333 49 1 5216 5547 300672843 300673175 2.970000e-88 337
38 TraesCS5D01G569200 chr1A 95.484 155 6 1 1055 1208 592997048 592997202 5.140000e-61 246
39 TraesCS5D01G569200 chr1A 92.903 155 11 0 1054 1208 108908595 108908441 6.700000e-55 226
40 TraesCS5D01G569200 chr1A 87.179 156 16 4 1055 1208 540178997 540179150 2.460000e-39 174
41 TraesCS5D01G569200 chr5A 92.857 154 11 0 1055 1208 331386746 331386899 2.410000e-54 224
42 TraesCS5D01G569200 chr6A 88.889 153 16 1 1057 1208 196825388 196825236 3.160000e-43 187
43 TraesCS5D01G569200 chr1D 85.047 107 7 5 5755 5861 246679186 246679089 4.240000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G569200 chr5D 565743102 565749742 6640 False 12264.000000 12264 100.000000 1 6641 1 chr5D.!!$F4 6640
1 TraesCS5D01G569200 chr5D 414562897 414564611 1714 False 2922.000000 2922 97.437000 1208 2921 1 chr5D.!!$F2 1713
2 TraesCS5D01G569200 chr5D 124073842 124075552 1710 True 2918.000000 2918 97.433000 1209 2921 1 chr5D.!!$R1 1712
3 TraesCS5D01G569200 chr5D 397899203 397900916 1713 True 2904.000000 2904 97.259000 1209 2921 1 chr5D.!!$R2 1712
4 TraesCS5D01G569200 chr7D 58521682 58523394 1712 True 2904.000000 2904 97.261000 1209 2921 1 chr7D.!!$R1 1712
5 TraesCS5D01G569200 chr7D 240547219 240548929 1710 False 2900.000000 2900 97.261000 1211 2921 1 chr7D.!!$F1 1710
6 TraesCS5D01G569200 chr7D 546058874 546061183 2309 True 1891.500000 3544 95.513000 1056 5083 2 chr7D.!!$R2 4027
7 TraesCS5D01G569200 chr7B 71351550 71353710 2160 False 3144.000000 3144 92.926000 2922 5083 1 chr7B.!!$F1 2161
8 TraesCS5D01G569200 chr3D 157389891 157391603 1712 True 2959.000000 2959 97.843000 1209 2921 1 chr3D.!!$R1 1712
9 TraesCS5D01G569200 chr3D 157397392 157399098 1706 True 2924.000000 2924 97.548000 1209 2919 1 chr3D.!!$R2 1710
10 TraesCS5D01G569200 chr3D 374337793 374339501 1708 False 2904.000000 2904 97.313000 1210 2921 1 chr3D.!!$F1 1711
11 TraesCS5D01G569200 chr4D 58121817 58123530 1713 False 2896.000000 2896 97.150000 1209 2925 1 chr4D.!!$F1 1716
12 TraesCS5D01G569200 chr5B 533456583 533458743 2160 True 2335.000000 2335 86.183000 2922 5082 1 chr5B.!!$R1 2160
13 TraesCS5D01G569200 chr5B 189158264 189160570 2306 True 1414.000000 2663 87.686000 1055 5083 2 chr5B.!!$R2 4028
14 TraesCS5D01G569200 chr5B 707393550 707397730 4180 True 377.714286 994 90.870286 1 6381 7 chr5B.!!$R3 6380
15 TraesCS5D01G569200 chr4A 440256094 440258259 2165 False 2654.000000 2654 88.786000 2918 5083 1 chr4A.!!$F1 2165
16 TraesCS5D01G569200 chr4A 607291444 607293013 1569 False 411.000000 688 89.504000 1 737 2 chr4A.!!$F2 736
17 TraesCS5D01G569200 chr3A 719113494 719115653 2159 False 2501.000000 2501 87.581000 2922 5083 1 chr3A.!!$F2 2161
18 TraesCS5D01G569200 chr3A 130893612 130895769 2157 True 2483.000000 2483 87.431000 2922 5083 1 chr3A.!!$R1 2161
19 TraesCS5D01G569200 chr7A 46219446 46221329 1883 True 2446.000000 2446 90.101000 2922 4808 1 chr7A.!!$R1 1886
20 TraesCS5D01G569200 chr6B 33521064 33523223 2159 True 2435.000000 2435 87.015000 2922 5083 1 chr6B.!!$R1 2161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 1769 0.681733 CATACTCCCTCCGTCCCATG 59.318 60.000 0.00 0.00 0.00 3.66 F
1577 3867 0.968901 TCGTGCAACTCCCGGATACT 60.969 55.000 0.73 0.00 31.75 2.12 F
2231 4521 0.109913 GAAAGTTTCGGGGGTCACCT 59.890 55.000 0.00 0.00 40.03 4.00 F
3077 5387 2.502142 TCTCTGCATCCAAATGTGCT 57.498 45.000 0.00 0.00 41.78 4.40 F
3179 5489 0.250901 TGCCTCTGACTTTGGAAGGC 60.251 55.000 4.77 4.77 40.97 4.35 F
3526 5837 0.394899 GGGTAGCTTGCAAGATGGCT 60.395 55.000 30.39 21.68 38.62 4.75 F
5125 7438 1.000171 GGCCAGCAAATAAGCATAGGC 60.000 52.381 0.00 0.00 43.72 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 4451 0.613777 ATTCTTCACCTCCGGACCAC 59.386 55.000 0.00 0.00 0.00 4.16 R
3077 5387 0.625316 ATCAGCACCATGGGTTGCTA 59.375 50.000 24.94 15.60 37.74 3.49 R
3092 5402 1.531264 GCAGTTCGCAATGAGCATCAG 60.531 52.381 0.00 0.00 46.09 2.90 R
4681 6993 1.378646 GGGCTTTGGACCTAGGTGC 60.379 63.158 25.53 25.53 37.73 5.01 R
5083 7395 0.179004 TCAATTCACTTGCCGTGGGT 60.179 50.000 3.75 0.00 43.94 4.51 R
5159 7472 0.523072 ATCACAAGCATGGCAACGAC 59.477 50.000 0.00 0.00 42.51 4.34 R
6572 9284 0.106519 CCGGGAGCCCAAGAATCATT 60.107 55.000 6.34 0.00 35.37 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 84 2.543777 TTGGTTCAGGTCAGTACAGC 57.456 50.000 0.00 0.00 0.00 4.40
118 371 1.732417 GACCCGTCCCCGAGTCATAC 61.732 65.000 0.00 0.00 41.03 2.39
155 408 6.963242 CGTCTTTATTGGTCACATTGATTCAG 59.037 38.462 0.00 0.00 0.00 3.02
163 416 4.549458 GTCACATTGATTCAGGTTGGTTG 58.451 43.478 0.00 0.00 0.00 3.77
171 424 4.349636 TGATTCAGGTTGGTTGTCTTCCTA 59.650 41.667 0.00 0.00 0.00 2.94
177 430 1.729586 TGGTTGTCTTCCTAGCACCT 58.270 50.000 0.00 0.00 0.00 4.00
204 457 1.359168 ACAACTAGTTCTCCCCACCC 58.641 55.000 4.77 0.00 0.00 4.61
208 461 1.536907 TAGTTCTCCCCACCCGCAA 60.537 57.895 0.00 0.00 0.00 4.85
209 462 1.128809 TAGTTCTCCCCACCCGCAAA 61.129 55.000 0.00 0.00 0.00 3.68
457 1296 9.748708 TCATTGAGAAAAATGGTTAAGTTCTTG 57.251 29.630 0.00 0.00 37.98 3.02
645 1716 7.881775 ATGGAAAATGTTCTACCCAATCTAC 57.118 36.000 0.00 0.00 33.92 2.59
646 1717 5.878116 TGGAAAATGTTCTACCCAATCTACG 59.122 40.000 0.00 0.00 33.92 3.51
649 1720 7.120138 GGAAAATGTTCTACCCAATCTACGAAA 59.880 37.037 0.00 0.00 33.92 3.46
689 1760 7.600752 GCAAAGATATCTAACACATACTCCCTC 59.399 40.741 5.46 0.00 0.00 4.30
698 1769 0.681733 CATACTCCCTCCGTCCCATG 59.318 60.000 0.00 0.00 0.00 3.66
701 1772 1.221840 CTCCCTCCGTCCCATGTTG 59.778 63.158 0.00 0.00 0.00 3.33
702 1773 1.229368 TCCCTCCGTCCCATGTTGA 60.229 57.895 0.00 0.00 0.00 3.18
720 1791 8.252417 CCATGTTGATTGTCTTTGAAATGGATA 58.748 33.333 0.00 0.00 34.12 2.59
859 2140 5.355350 GGACCTGTGATGCTTAATATATGGC 59.645 44.000 0.00 0.00 0.00 4.40
862 2143 6.656693 ACCTGTGATGCTTAATATATGGCTTC 59.343 38.462 11.23 11.23 0.00 3.86
864 2145 7.175467 CCTGTGATGCTTAATATATGGCTTCAA 59.825 37.037 17.40 11.38 39.37 2.69
868 2149 6.648879 TGCTTAATATATGGCTTCAAACCC 57.351 37.500 6.99 0.00 0.00 4.11
872 2153 8.204160 GCTTAATATATGGCTTCAAACCCTTTT 58.796 33.333 0.00 0.00 0.00 2.27
873 2154 9.533253 CTTAATATATGGCTTCAAACCCTTTTG 57.467 33.333 0.00 0.00 43.17 2.44
905 2190 6.657836 AAGAAATCGTCCATACGTTTTAGG 57.342 37.500 0.00 0.00 45.93 2.69
906 2191 5.969423 AGAAATCGTCCATACGTTTTAGGA 58.031 37.500 0.00 0.00 45.93 2.94
944 3233 1.760029 GGTTGTTGGTGGTTGGATGTT 59.240 47.619 0.00 0.00 0.00 2.71
947 3236 3.866703 TGTTGGTGGTTGGATGTTAGA 57.133 42.857 0.00 0.00 0.00 2.10
959 3248 3.521937 TGGATGTTAGAAGTTGGGGTAGG 59.478 47.826 0.00 0.00 0.00 3.18
960 3249 3.542648 GATGTTAGAAGTTGGGGTAGGC 58.457 50.000 0.00 0.00 0.00 3.93
961 3250 2.340731 TGTTAGAAGTTGGGGTAGGCA 58.659 47.619 0.00 0.00 0.00 4.75
962 3251 2.712087 TGTTAGAAGTTGGGGTAGGCAA 59.288 45.455 0.00 0.00 0.00 4.52
963 3252 3.244770 TGTTAGAAGTTGGGGTAGGCAAG 60.245 47.826 0.00 0.00 0.00 4.01
964 3253 1.446016 AGAAGTTGGGGTAGGCAAGT 58.554 50.000 0.00 0.00 0.00 3.16
965 3254 2.627933 AGAAGTTGGGGTAGGCAAGTA 58.372 47.619 0.00 0.00 0.00 2.24
966 3255 2.572104 AGAAGTTGGGGTAGGCAAGTAG 59.428 50.000 0.00 0.00 0.00 2.57
986 3275 2.131183 GGCACAGCGAGATAGTGAATC 58.869 52.381 0.00 0.00 35.33 2.52
1047 3336 3.005472 CCCATCAGTATACTACACCCACG 59.995 52.174 4.74 0.00 0.00 4.94
1048 3337 3.005472 CCATCAGTATACTACACCCACGG 59.995 52.174 4.74 0.00 0.00 4.94
1049 3338 2.026641 TCAGTATACTACACCCACGGC 58.973 52.381 4.74 0.00 0.00 5.68
1050 3339 1.752498 CAGTATACTACACCCACGGCA 59.248 52.381 4.74 0.00 0.00 5.69
1051 3340 2.166870 CAGTATACTACACCCACGGCAA 59.833 50.000 4.74 0.00 0.00 4.52
1052 3341 2.429610 AGTATACTACACCCACGGCAAG 59.570 50.000 2.75 0.00 0.00 4.01
1053 3342 1.272807 ATACTACACCCACGGCAAGT 58.727 50.000 0.00 0.00 0.00 3.16
1135 3424 5.897377 AGCAAAGTTCTGTACAACAAAGT 57.103 34.783 0.00 0.00 0.00 2.66
1139 3428 7.968405 AGCAAAGTTCTGTACAACAAAGTAAAG 59.032 33.333 0.00 0.00 31.78 1.85
1155 3444 8.079809 ACAAAGTAAAGAAAATACAACATCCCG 58.920 33.333 0.00 0.00 0.00 5.14
1204 3494 9.454859 AGGAAAGTCCATGAGAAATTAAGTTAG 57.545 33.333 0.00 0.00 39.61 2.34
1205 3495 9.449719 GGAAAGTCCATGAGAAATTAAGTTAGA 57.550 33.333 0.00 0.00 36.28 2.10
1497 3787 7.308830 CCCAATCCTAAGCATAGCATAAAAGAC 60.309 40.741 0.00 0.00 0.00 3.01
1577 3867 0.968901 TCGTGCAACTCCCGGATACT 60.969 55.000 0.73 0.00 31.75 2.12
1634 3924 5.246883 ACGTAACTGGGTGACTATAAAGGTT 59.753 40.000 0.00 0.00 0.00 3.50
1750 4040 6.818142 CCACTCGGTAATGCATCATCATAATA 59.182 38.462 0.00 0.00 0.00 0.98
1965 4255 1.003355 CGTGGAACATGTGGGAGCT 60.003 57.895 0.00 0.00 44.52 4.09
1978 4268 2.706190 GTGGGAGCTAACATGGGTATCT 59.294 50.000 0.00 0.00 0.00 1.98
2108 4398 5.542635 AGAGATATTAGTATGCGGAAACCCA 59.457 40.000 0.00 0.00 0.00 4.51
2161 4451 1.507174 GTCACGAGGAGTTCCGGAG 59.493 63.158 3.34 0.00 42.08 4.63
2231 4521 0.109913 GAAAGTTTCGGGGGTCACCT 59.890 55.000 0.00 0.00 40.03 4.00
2525 4835 4.120755 GGAAGGGAGGGCAGCAGG 62.121 72.222 0.00 0.00 0.00 4.85
2536 4846 2.513204 CAGCAGGATGACAGCCCG 60.513 66.667 6.01 0.00 39.69 6.13
2735 5045 4.047059 GAGGTGCCGTCCGTTCGA 62.047 66.667 0.00 0.00 0.00 3.71
2892 5202 4.130118 GGATCTTGGTGATGCGTAGAAAT 58.870 43.478 0.00 0.00 35.14 2.17
3031 5341 2.573009 TCTCCATGCTTGAACTGATGGA 59.427 45.455 0.22 0.00 41.69 3.41
3077 5387 2.502142 TCTCTGCATCCAAATGTGCT 57.498 45.000 0.00 0.00 41.78 4.40
3092 5402 1.678635 TGCTAGCAACCCATGGTGC 60.679 57.895 16.84 17.48 40.70 5.01
3179 5489 0.250901 TGCCTCTGACTTTGGAAGGC 60.251 55.000 4.77 4.77 40.97 4.35
3526 5837 0.394899 GGGTAGCTTGCAAGATGGCT 60.395 55.000 30.39 21.68 38.62 4.75
3831 6142 5.180868 GCATTCTGTCTGGATAATAAGCCTG 59.819 44.000 0.00 0.00 30.18 4.85
4097 6408 3.642848 ACACATGAAGAAAATGGGCAAGT 59.357 39.130 0.00 0.00 31.22 3.16
4230 6541 2.964209 TGGTTTGGAGAGACAGAGAGT 58.036 47.619 0.00 0.00 0.00 3.24
4412 6724 2.907910 CTGGTGTAATTGAGCAGCAC 57.092 50.000 0.00 0.00 38.05 4.40
4502 6814 1.965643 GCAGAGGAGCAGAGATCAGAT 59.034 52.381 0.00 0.00 0.00 2.90
4522 6834 8.741603 TCAGATCATTCTTCATTGCTTCATTA 57.258 30.769 0.00 0.00 0.00 1.90
4544 6856 7.523293 TTAAGAATTGTTTGGAGCAGATCAA 57.477 32.000 0.00 0.00 0.00 2.57
4640 6952 3.517901 AGGTACACCATTTAGCAGCACTA 59.482 43.478 0.38 0.00 38.89 2.74
4718 7030 3.623453 GCCCCTAGCAATGAGAAGTTTCT 60.623 47.826 0.00 0.00 42.97 2.52
4836 7148 4.352009 TCATATGACCAGGCCAAACAATT 58.648 39.130 5.01 0.00 0.00 2.32
4887 7199 7.283807 TCCATATTGATTCTGATGAACCAACTG 59.716 37.037 0.00 0.00 38.41 3.16
5083 7395 8.571461 AATCTTCAATCAGCTTGTAGAAATCA 57.429 30.769 0.00 0.00 42.37 2.57
5084 7396 7.369803 TCTTCAATCAGCTTGTAGAAATCAC 57.630 36.000 0.00 0.00 38.05 3.06
5125 7438 1.000171 GGCCAGCAAATAAGCATAGGC 60.000 52.381 0.00 0.00 43.72 3.93
5152 7465 1.766494 TAGCAATGGCCATCACCAAG 58.234 50.000 21.08 6.31 44.65 3.61
5157 7470 1.610554 ATGGCCATCACCAAGCTTGC 61.611 55.000 21.43 7.54 44.65 4.01
5159 7472 2.879907 CCATCACCAAGCTTGCGG 59.120 61.111 21.43 14.34 0.00 5.69
5163 7476 2.731691 ATCACCAAGCTTGCGGTCGT 62.732 55.000 21.43 10.10 31.41 4.34
5173 7486 3.737172 GCGGTCGTTGCCATGCTT 61.737 61.111 0.00 0.00 0.00 3.91
5185 7498 3.534554 TGCCATGCTTGTGATACTACTG 58.465 45.455 0.00 0.00 0.00 2.74
5188 7501 4.132336 CCATGCTTGTGATACTACTGCAT 58.868 43.478 0.00 0.00 39.79 3.96
5196 7509 4.162131 TGTGATACTACTGCATGTGTCCAT 59.838 41.667 0.00 0.00 0.00 3.41
5260 7573 0.036306 GGTTCGAGAAAGGCCAGGAA 59.964 55.000 5.01 0.00 0.00 3.36
5389 7702 1.094073 GCATCACCAGCGAGCAGAAT 61.094 55.000 0.00 0.00 0.00 2.40
5530 7843 2.603776 GTCCCCGTCACCTGGACT 60.604 66.667 0.00 0.00 44.17 3.85
5534 7847 2.207229 CCCGTCACCTGGACTGACA 61.207 63.158 15.28 0.00 44.68 3.58
5543 7856 1.417890 CCTGGACTGACACCTGAAACT 59.582 52.381 0.00 0.00 0.00 2.66
5551 7864 3.261580 TGACACCTGAAACTATGCATCG 58.738 45.455 0.19 0.00 0.00 3.84
5560 7873 0.318441 ACTATGCATCGATCCACCGG 59.682 55.000 0.19 0.00 0.00 5.28
5597 7918 2.027073 CGCAAAGACGGCAGTGCTA 61.027 57.895 16.11 0.00 34.79 3.49
5602 7923 0.460284 AAGACGGCAGTGCTAATCGG 60.460 55.000 16.11 0.53 0.00 4.18
5675 8004 1.296727 GGATAGCAGTGCGGGTTTAC 58.703 55.000 10.00 0.00 0.00 2.01
5676 8005 0.928229 GATAGCAGTGCGGGTTTACG 59.072 55.000 10.00 0.00 0.00 3.18
5678 8007 1.534336 TAGCAGTGCGGGTTTACGGA 61.534 55.000 10.00 0.00 0.00 4.69
5679 8008 2.388232 GCAGTGCGGGTTTACGGAG 61.388 63.158 0.00 0.00 34.05 4.63
5681 8010 0.244450 CAGTGCGGGTTTACGGAGTA 59.756 55.000 0.00 0.00 45.11 2.59
5708 8055 9.798994 AGTATCTTGTAATTTAACTAGTCGGTG 57.201 33.333 0.00 0.00 0.00 4.94
5733 8080 1.199097 CTGTTGTGCAATAACCCGACC 59.801 52.381 11.33 0.00 37.10 4.79
5734 8081 1.202830 TGTTGTGCAATAACCCGACCT 60.203 47.619 11.33 0.00 37.10 3.85
5735 8082 2.038689 TGTTGTGCAATAACCCGACCTA 59.961 45.455 11.33 0.00 37.10 3.08
5736 8083 2.676342 GTTGTGCAATAACCCGACCTAG 59.324 50.000 0.00 0.00 31.05 3.02
5737 8084 1.208535 TGTGCAATAACCCGACCTAGG 59.791 52.381 7.41 7.41 0.00 3.02
5738 8085 0.179468 TGCAATAACCCGACCTAGGC 59.821 55.000 9.30 0.36 0.00 3.93
5745 8092 1.115930 ACCCGACCTAGGCTATGCTG 61.116 60.000 9.30 0.00 0.00 4.41
5747 8094 0.827925 CCGACCTAGGCTATGCTGGA 60.828 60.000 9.30 0.00 0.00 3.86
5766 8113 5.757320 GCTGGAGTATTGTACTACTCTCGTA 59.243 44.000 17.24 5.96 44.62 3.43
5801 8148 4.190772 AGAAGAAATGCTAGCTCTTCAGC 58.809 43.478 31.12 20.78 44.94 4.26
5841 8188 8.945481 ATCTCTATCTGAGTTCATCTTTTGTG 57.055 34.615 0.00 0.00 43.13 3.33
5855 8441 7.264221 TCATCTTTTGTGCTTGTGTACATTTT 58.736 30.769 0.00 0.00 38.52 1.82
5884 8470 1.822990 TCCACTGGTGTAGAATCGTCC 59.177 52.381 0.00 0.00 0.00 4.79
5890 8476 2.034179 TGGTGTAGAATCGTCCTATGCG 59.966 50.000 0.00 0.00 0.00 4.73
5893 8479 3.729716 GTGTAGAATCGTCCTATGCGAAC 59.270 47.826 0.00 0.00 41.84 3.95
5929 8515 2.285083 TCCTGACACAGTTTTGAACCG 58.715 47.619 0.00 0.00 0.00 4.44
5931 8517 1.670811 CTGACACAGTTTTGAACCGCT 59.329 47.619 0.00 0.00 0.00 5.52
5935 8521 1.032014 ACAGTTTTGAACCGCTGCAT 58.968 45.000 0.00 0.00 32.65 3.96
5945 8531 1.210931 CCGCTGCATTGTGAAGGTG 59.789 57.895 0.00 0.00 0.00 4.00
5956 8542 1.621317 TGTGAAGGTGTGCGATAGGAA 59.379 47.619 0.00 0.00 39.13 3.36
5960 8546 1.276622 AGGTGTGCGATAGGAAGGTT 58.723 50.000 0.00 0.00 39.13 3.50
5963 8549 2.420129 GGTGTGCGATAGGAAGGTTCAT 60.420 50.000 0.00 0.00 39.13 2.57
5965 8551 2.128035 GTGCGATAGGAAGGTTCATCG 58.872 52.381 7.67 7.67 42.36 3.84
5967 8553 2.802787 CGATAGGAAGGTTCATCGCT 57.197 50.000 1.02 0.00 34.54 4.93
5987 8573 4.745125 CGCTCACGACATGGATTAATAGTT 59.255 41.667 0.00 0.00 43.93 2.24
6010 8596 3.085443 CGATAGCTCCTTTGATCACGT 57.915 47.619 0.00 0.00 0.00 4.49
6011 8597 3.046390 CGATAGCTCCTTTGATCACGTC 58.954 50.000 0.00 0.00 0.00 4.34
6012 8598 3.243234 CGATAGCTCCTTTGATCACGTCT 60.243 47.826 0.00 0.00 0.00 4.18
6013 8599 2.376808 AGCTCCTTTGATCACGTCTG 57.623 50.000 0.00 0.00 0.00 3.51
6051 8660 5.008118 GGAGAGCTATCACAAACAATTAGGC 59.992 44.000 11.08 0.00 0.00 3.93
6052 8661 5.500234 AGAGCTATCACAAACAATTAGGCA 58.500 37.500 0.00 0.00 0.00 4.75
6058 8667 5.947228 TCACAAACAATTAGGCAGAAGAG 57.053 39.130 0.00 0.00 0.00 2.85
6064 8673 2.932614 CAATTAGGCAGAAGAGGTCGTG 59.067 50.000 0.00 0.00 0.00 4.35
6080 8792 2.952978 GTCGTGTGAGATAGGGTGATCT 59.047 50.000 0.00 0.00 38.94 2.75
6110 8822 1.067060 GCCTTTCCTGCTGAAAACGTT 59.933 47.619 0.00 0.00 42.25 3.99
6111 8823 2.481276 GCCTTTCCTGCTGAAAACGTTT 60.481 45.455 7.96 7.96 42.25 3.60
6112 8824 3.780902 CCTTTCCTGCTGAAAACGTTTT 58.219 40.909 25.46 25.46 42.25 2.43
6113 8825 3.551485 CCTTTCCTGCTGAAAACGTTTTG 59.449 43.478 29.67 17.39 42.25 2.44
6125 8837 2.489275 CGTTTTGTGGCCTGGCAGT 61.489 57.895 22.05 0.00 0.00 4.40
6132 8844 2.057140 TGTGGCCTGGCAGTATATCAT 58.943 47.619 22.05 0.00 0.00 2.45
6133 8845 3.247162 TGTGGCCTGGCAGTATATCATA 58.753 45.455 22.05 2.54 0.00 2.15
6134 8846 3.650461 TGTGGCCTGGCAGTATATCATAA 59.350 43.478 22.05 0.00 0.00 1.90
6135 8847 4.103943 TGTGGCCTGGCAGTATATCATAAA 59.896 41.667 22.05 0.00 0.00 1.40
6136 8848 4.455877 GTGGCCTGGCAGTATATCATAAAC 59.544 45.833 22.05 0.00 0.00 2.01
6137 8849 3.684788 GGCCTGGCAGTATATCATAAACG 59.315 47.826 22.05 0.00 0.00 3.60
6138 8850 4.315803 GCCTGGCAGTATATCATAAACGT 58.684 43.478 15.17 0.00 0.00 3.99
6139 8851 4.755123 GCCTGGCAGTATATCATAAACGTT 59.245 41.667 15.17 0.00 0.00 3.99
6140 8852 5.238650 GCCTGGCAGTATATCATAAACGTTT 59.761 40.000 18.90 18.90 0.00 3.60
6141 8853 6.238648 GCCTGGCAGTATATCATAAACGTTTT 60.239 38.462 20.19 3.29 0.00 2.43
6142 8854 7.681065 GCCTGGCAGTATATCATAAACGTTTTT 60.681 37.037 20.19 8.68 0.00 1.94
6155 8867 7.881232 TCATAAACGTTTTTCTAGGAGGACATT 59.119 33.333 20.19 0.00 0.00 2.71
6159 8871 5.826208 ACGTTTTTCTAGGAGGACATTGTTT 59.174 36.000 0.00 0.00 0.00 2.83
6180 8892 4.044946 TGTGGTGATTCATTGATCCCAA 57.955 40.909 0.00 0.00 36.61 4.12
6206 8918 4.984161 GCTCATTTTGTAGCAATTGTGTGT 59.016 37.500 7.40 0.00 38.63 3.72
6223 8935 0.391130 TGTTGCTAGTGGTCATCGCC 60.391 55.000 0.00 0.00 0.00 5.54
6244 8956 6.097270 TCGCCCACTGTACTTAATATGTAACT 59.903 38.462 0.00 0.00 0.00 2.24
6272 8984 4.877251 GCAATGCAATGACCCAATTAACAT 59.123 37.500 5.79 0.00 0.00 2.71
6283 8995 7.777095 TGACCCAATTAACATGTTTATTAGCC 58.223 34.615 19.34 9.59 0.00 3.93
6327 9039 9.683069 CTAACAGGCAAATCCACATTTTATATC 57.317 33.333 0.00 0.00 37.29 1.63
6331 9043 7.379529 CAGGCAAATCCACATTTTATATCGAAC 59.620 37.037 0.00 0.00 37.29 3.95
6359 9071 5.817296 TGTTCACCATGATTTCTTATCGGAG 59.183 40.000 0.00 0.00 0.00 4.63
6381 9093 8.138074 CGGAGACACGATATATTTCATATCCAT 58.862 37.037 0.00 0.00 35.47 3.41
6382 9094 9.254133 GGAGACACGATATATTTCATATCCATG 57.746 37.037 0.00 0.00 0.00 3.66
6383 9095 9.809096 GAGACACGATATATTTCATATCCATGT 57.191 33.333 0.00 7.83 33.31 3.21
6392 9104 3.868757 TCATATCCATGTACTAGCCGC 57.131 47.619 0.00 0.00 33.57 6.53
6393 9105 3.431415 TCATATCCATGTACTAGCCGCT 58.569 45.455 0.00 0.00 33.57 5.52
6394 9106 4.595986 TCATATCCATGTACTAGCCGCTA 58.404 43.478 0.00 0.00 33.57 4.26
6395 9107 4.640647 TCATATCCATGTACTAGCCGCTAG 59.359 45.833 23.33 23.33 35.65 3.42
6396 9108 1.617322 TCCATGTACTAGCCGCTAGG 58.383 55.000 27.27 12.46 38.30 3.02
6397 9109 1.144298 TCCATGTACTAGCCGCTAGGA 59.856 52.381 27.27 19.24 38.30 2.94
6398 9110 2.171840 CCATGTACTAGCCGCTAGGAT 58.828 52.381 27.27 15.09 38.30 3.24
6399 9111 2.563179 CCATGTACTAGCCGCTAGGATT 59.437 50.000 27.27 12.20 38.30 3.01
6400 9112 3.006967 CCATGTACTAGCCGCTAGGATTT 59.993 47.826 27.27 11.88 38.30 2.17
6401 9113 4.503296 CCATGTACTAGCCGCTAGGATTTT 60.503 45.833 27.27 11.55 38.30 1.82
6402 9114 5.279306 CCATGTACTAGCCGCTAGGATTTTA 60.279 44.000 27.27 10.64 38.30 1.52
6403 9115 6.398918 CATGTACTAGCCGCTAGGATTTTAT 58.601 40.000 27.27 12.25 38.30 1.40
6404 9116 7.363530 CCATGTACTAGCCGCTAGGATTTTATA 60.364 40.741 27.27 11.68 38.30 0.98
6405 9117 7.528996 TGTACTAGCCGCTAGGATTTTATAA 57.471 36.000 27.27 4.87 38.30 0.98
6406 9118 8.130671 TGTACTAGCCGCTAGGATTTTATAAT 57.869 34.615 27.27 8.35 38.30 1.28
6407 9119 8.591072 TGTACTAGCCGCTAGGATTTTATAATT 58.409 33.333 27.27 7.90 38.30 1.40
6408 9120 7.907214 ACTAGCCGCTAGGATTTTATAATTG 57.093 36.000 27.27 2.73 38.30 2.32
6409 9121 7.676947 ACTAGCCGCTAGGATTTTATAATTGA 58.323 34.615 27.27 0.00 38.30 2.57
6410 9122 6.803154 AGCCGCTAGGATTTTATAATTGAC 57.197 37.500 0.00 0.00 41.02 3.18
6411 9123 6.296026 AGCCGCTAGGATTTTATAATTGACA 58.704 36.000 0.00 0.00 41.02 3.58
6412 9124 6.942576 AGCCGCTAGGATTTTATAATTGACAT 59.057 34.615 0.00 0.00 41.02 3.06
6413 9125 7.119846 AGCCGCTAGGATTTTATAATTGACATC 59.880 37.037 0.00 0.00 41.02 3.06
6414 9126 7.094805 GCCGCTAGGATTTTATAATTGACATCA 60.095 37.037 0.00 0.00 41.02 3.07
6415 9127 8.230486 CCGCTAGGATTTTATAATTGACATCAC 58.770 37.037 0.00 0.00 41.02 3.06
6416 9128 7.952101 CGCTAGGATTTTATAATTGACATCACG 59.048 37.037 0.00 0.00 0.00 4.35
6417 9129 8.230486 GCTAGGATTTTATAATTGACATCACGG 58.770 37.037 0.00 0.00 0.00 4.94
6418 9130 9.273016 CTAGGATTTTATAATTGACATCACGGT 57.727 33.333 0.00 0.00 0.00 4.83
6420 9132 9.052759 AGGATTTTATAATTGACATCACGGTAC 57.947 33.333 0.00 0.00 0.00 3.34
6421 9133 8.832521 GGATTTTATAATTGACATCACGGTACA 58.167 33.333 0.00 0.00 0.00 2.90
6434 9146 9.286946 GACATCACGGTACATTATATAACTAGC 57.713 37.037 0.00 0.12 0.00 3.42
6435 9147 9.021807 ACATCACGGTACATTATATAACTAGCT 57.978 33.333 0.00 0.00 0.00 3.32
6438 9150 9.730705 TCACGGTACATTATATAACTAGCTAGT 57.269 33.333 20.95 20.95 38.39 2.57
6452 9164 9.953565 ATAACTAGCTAGTTCACCATAACAAAA 57.046 29.630 36.17 18.24 44.77 2.44
6453 9165 8.863872 AACTAGCTAGTTCACCATAACAAAAT 57.136 30.769 29.48 5.61 42.52 1.82
6454 9166 9.953565 AACTAGCTAGTTCACCATAACAAAATA 57.046 29.630 29.48 0.00 42.52 1.40
6455 9167 9.379791 ACTAGCTAGTTCACCATAACAAAATAC 57.620 33.333 20.95 0.00 31.13 1.89
6456 9168 9.378551 CTAGCTAGTTCACCATAACAAAATACA 57.621 33.333 12.92 0.00 0.00 2.29
6457 9169 8.040716 AGCTAGTTCACCATAACAAAATACAC 57.959 34.615 0.00 0.00 0.00 2.90
6458 9170 7.883311 AGCTAGTTCACCATAACAAAATACACT 59.117 33.333 0.00 0.00 0.00 3.55
6459 9171 9.158233 GCTAGTTCACCATAACAAAATACACTA 57.842 33.333 0.00 0.00 0.00 2.74
6461 9173 8.911918 AGTTCACCATAACAAAATACACTACA 57.088 30.769 0.00 0.00 0.00 2.74
6462 9174 9.515226 AGTTCACCATAACAAAATACACTACAT 57.485 29.630 0.00 0.00 0.00 2.29
6465 9177 9.104965 TCACCATAACAAAATACACTACATAGC 57.895 33.333 0.00 0.00 0.00 2.97
6466 9178 9.109393 CACCATAACAAAATACACTACATAGCT 57.891 33.333 0.00 0.00 0.00 3.32
6472 9184 9.938280 AACAAAATACACTACATAGCTAGTTCA 57.062 29.630 0.00 0.00 0.00 3.18
6473 9185 9.367444 ACAAAATACACTACATAGCTAGTTCAC 57.633 33.333 0.00 0.00 0.00 3.18
6474 9186 8.818057 CAAAATACACTACATAGCTAGTTCACC 58.182 37.037 0.00 0.00 0.00 4.02
6475 9187 7.899648 AATACACTACATAGCTAGTTCACCT 57.100 36.000 0.00 0.00 0.00 4.00
6476 9188 7.899648 ATACACTACATAGCTAGTTCACCTT 57.100 36.000 0.00 0.00 0.00 3.50
6477 9189 8.991783 ATACACTACATAGCTAGTTCACCTTA 57.008 34.615 0.00 0.00 0.00 2.69
6478 9190 7.336161 ACACTACATAGCTAGTTCACCTTAG 57.664 40.000 0.00 0.00 0.00 2.18
6479 9191 6.183360 ACACTACATAGCTAGTTCACCTTAGC 60.183 42.308 0.00 0.00 35.91 3.09
6480 9192 4.674281 ACATAGCTAGTTCACCTTAGCC 57.326 45.455 0.00 0.00 36.29 3.93
6481 9193 4.030913 ACATAGCTAGTTCACCTTAGCCA 58.969 43.478 0.00 0.00 36.29 4.75
6482 9194 4.100189 ACATAGCTAGTTCACCTTAGCCAG 59.900 45.833 0.00 0.00 36.29 4.85
6495 9207 4.106925 GCCAGGTGCTCCTCCAGG 62.107 72.222 3.81 4.81 43.07 4.45
6496 9208 2.284921 CCAGGTGCTCCTCCAGGA 60.285 66.667 3.81 0.00 43.07 3.86
6497 9209 1.692042 CCAGGTGCTCCTCCAGGAT 60.692 63.158 3.81 0.00 44.46 3.24
6498 9210 1.277580 CCAGGTGCTCCTCCAGGATT 61.278 60.000 3.81 0.00 44.46 3.01
6499 9211 0.622665 CAGGTGCTCCTCCAGGATTT 59.377 55.000 3.81 0.00 44.46 2.17
6500 9212 0.622665 AGGTGCTCCTCCAGGATTTG 59.377 55.000 0.18 0.00 44.46 2.32
6506 9218 2.280079 CTCCAGGATTTGGGGGCC 59.720 66.667 0.00 0.00 44.43 5.80
6507 9219 2.625460 CTCCAGGATTTGGGGGCCA 61.625 63.158 4.39 0.00 44.43 5.36
6508 9220 2.042639 CCAGGATTTGGGGGCCAG 60.043 66.667 4.39 0.00 43.75 4.85
6509 9221 2.761213 CAGGATTTGGGGGCCAGC 60.761 66.667 4.39 0.00 33.81 4.85
6510 9222 4.447342 AGGATTTGGGGGCCAGCG 62.447 66.667 4.39 0.00 33.81 5.18
6521 9233 4.183686 GCCAGCGCGCATGACAAT 62.184 61.111 35.10 7.55 0.00 2.71
6522 9234 2.023741 CCAGCGCGCATGACAATC 59.976 61.111 35.10 0.00 0.00 2.67
6523 9235 2.752939 CCAGCGCGCATGACAATCA 61.753 57.895 35.10 0.00 0.00 2.57
6524 9236 1.354155 CAGCGCGCATGACAATCAT 59.646 52.632 35.10 4.83 37.65 2.45
6533 9245 1.959042 ATGACAATCATGGCGACCTC 58.041 50.000 0.00 0.00 37.40 3.85
6534 9246 0.612744 TGACAATCATGGCGACCTCA 59.387 50.000 0.00 0.00 37.40 3.86
6535 9247 1.210234 TGACAATCATGGCGACCTCAT 59.790 47.619 0.00 0.00 37.40 2.90
6536 9248 2.292267 GACAATCATGGCGACCTCATT 58.708 47.619 0.00 0.00 0.00 2.57
6537 9249 2.289002 GACAATCATGGCGACCTCATTC 59.711 50.000 0.00 0.00 0.00 2.67
6538 9250 1.262417 CAATCATGGCGACCTCATTCG 59.738 52.381 0.00 0.00 42.15 3.34
6539 9251 0.250038 ATCATGGCGACCTCATTCGG 60.250 55.000 0.00 0.00 39.50 4.30
6543 9255 4.814294 GCGACCTCATTCGGCCGT 62.814 66.667 27.15 2.93 39.50 5.68
6544 9256 2.885644 CGACCTCATTCGGCCGTG 60.886 66.667 27.15 17.74 35.26 4.94
6545 9257 3.195698 GACCTCATTCGGCCGTGC 61.196 66.667 27.15 0.00 0.00 5.34
6557 9269 3.803082 CCGTGCGGCCACAATCTG 61.803 66.667 2.24 0.00 42.17 2.90
6558 9270 4.465512 CGTGCGGCCACAATCTGC 62.466 66.667 2.24 0.00 42.17 4.26
6559 9271 3.058160 GTGCGGCCACAATCTGCT 61.058 61.111 2.24 0.00 41.67 4.24
6560 9272 2.282391 TGCGGCCACAATCTGCTT 60.282 55.556 2.24 0.00 36.79 3.91
6561 9273 2.334946 TGCGGCCACAATCTGCTTC 61.335 57.895 2.24 0.00 36.79 3.86
6562 9274 2.042831 GCGGCCACAATCTGCTTCT 61.043 57.895 2.24 0.00 33.24 2.85
6563 9275 0.744414 GCGGCCACAATCTGCTTCTA 60.744 55.000 2.24 0.00 33.24 2.10
6564 9276 1.009829 CGGCCACAATCTGCTTCTAC 58.990 55.000 2.24 0.00 0.00 2.59
6565 9277 1.009829 GGCCACAATCTGCTTCTACG 58.990 55.000 0.00 0.00 0.00 3.51
6566 9278 0.375106 GCCACAATCTGCTTCTACGC 59.625 55.000 0.00 0.00 0.00 4.42
6567 9279 0.647410 CCACAATCTGCTTCTACGCG 59.353 55.000 3.53 3.53 0.00 6.01
6568 9280 0.647410 CACAATCTGCTTCTACGCGG 59.353 55.000 12.47 0.00 37.63 6.46
6569 9281 1.084370 ACAATCTGCTTCTACGCGGC 61.084 55.000 12.47 3.78 36.24 6.53
6570 9282 1.521681 AATCTGCTTCTACGCGGCC 60.522 57.895 12.47 0.00 36.24 6.13
6571 9283 2.238847 AATCTGCTTCTACGCGGCCA 62.239 55.000 12.47 0.00 36.24 5.36
6572 9284 2.238847 ATCTGCTTCTACGCGGCCAA 62.239 55.000 12.47 0.00 36.24 4.52
6573 9285 2.031314 TGCTTCTACGCGGCCAAA 59.969 55.556 12.47 0.00 0.00 3.28
6574 9286 1.369091 CTGCTTCTACGCGGCCAAAT 61.369 55.000 12.47 0.00 0.00 2.32
6575 9287 1.062525 GCTTCTACGCGGCCAAATG 59.937 57.895 12.47 0.00 0.00 2.32
6576 9288 1.366111 GCTTCTACGCGGCCAAATGA 61.366 55.000 12.47 0.00 0.00 2.57
6577 9289 1.299541 CTTCTACGCGGCCAAATGAT 58.700 50.000 12.47 0.00 0.00 2.45
6578 9290 1.670811 CTTCTACGCGGCCAAATGATT 59.329 47.619 12.47 0.00 0.00 2.57
6579 9291 1.295792 TCTACGCGGCCAAATGATTC 58.704 50.000 12.47 0.00 0.00 2.52
6580 9292 1.134521 TCTACGCGGCCAAATGATTCT 60.135 47.619 12.47 0.00 0.00 2.40
6581 9293 1.670811 CTACGCGGCCAAATGATTCTT 59.329 47.619 12.47 0.00 0.00 2.52
6582 9294 0.171007 ACGCGGCCAAATGATTCTTG 59.829 50.000 12.47 0.00 0.00 3.02
6583 9295 0.526096 CGCGGCCAAATGATTCTTGG 60.526 55.000 2.24 1.26 45.26 3.61
6584 9296 0.179103 GCGGCCAAATGATTCTTGGG 60.179 55.000 2.24 0.00 43.11 4.12
6587 9299 2.591571 GCCAAATGATTCTTGGGCTC 57.408 50.000 6.77 0.00 43.11 4.70
6588 9300 1.137675 GCCAAATGATTCTTGGGCTCC 59.862 52.381 6.77 0.00 43.11 4.70
6589 9301 1.758862 CCAAATGATTCTTGGGCTCCC 59.241 52.381 0.00 0.00 39.82 4.30
6590 9302 1.406539 CAAATGATTCTTGGGCTCCCG 59.593 52.381 0.00 0.00 39.42 5.14
6591 9303 0.106519 AATGATTCTTGGGCTCCCGG 60.107 55.000 0.00 0.00 39.42 5.73
6592 9304 2.517166 GATTCTTGGGCTCCCGGC 60.517 66.667 0.00 0.00 39.42 6.13
6609 9321 2.438975 CCATGCAGCGTGGACCAT 60.439 61.111 27.62 0.00 42.73 3.55
6610 9322 1.153188 CCATGCAGCGTGGACCATA 60.153 57.895 27.62 0.00 42.73 2.74
6611 9323 0.535780 CCATGCAGCGTGGACCATAT 60.536 55.000 27.62 0.00 42.73 1.78
6612 9324 1.311859 CATGCAGCGTGGACCATATT 58.688 50.000 6.73 0.00 0.00 1.28
6613 9325 1.002142 CATGCAGCGTGGACCATATTG 60.002 52.381 6.73 0.00 0.00 1.90
6614 9326 0.251634 TGCAGCGTGGACCATATTGA 59.748 50.000 0.00 0.00 0.00 2.57
6615 9327 0.657840 GCAGCGTGGACCATATTGAC 59.342 55.000 0.00 0.00 0.00 3.18
6616 9328 0.930310 CAGCGTGGACCATATTGACG 59.070 55.000 0.00 0.00 0.00 4.35
6617 9329 0.535335 AGCGTGGACCATATTGACGT 59.465 50.000 0.00 0.00 32.66 4.34
6618 9330 0.928229 GCGTGGACCATATTGACGTC 59.072 55.000 9.11 9.11 32.66 4.34
6619 9331 1.470979 GCGTGGACCATATTGACGTCT 60.471 52.381 17.92 0.00 32.66 4.18
6620 9332 2.193447 CGTGGACCATATTGACGTCTG 58.807 52.381 17.92 6.33 0.00 3.51
6621 9333 2.550978 GTGGACCATATTGACGTCTGG 58.449 52.381 17.92 17.66 34.84 3.86
6622 9334 1.134521 TGGACCATATTGACGTCTGGC 60.135 52.381 18.63 12.33 31.72 4.85
6624 9336 0.821517 ACCATATTGACGTCTGGCGA 59.178 50.000 18.63 0.00 44.77 5.54
6625 9337 1.202417 ACCATATTGACGTCTGGCGAG 60.202 52.381 18.63 6.56 44.77 5.03
6626 9338 1.491670 CATATTGACGTCTGGCGAGG 58.508 55.000 17.92 0.00 44.77 4.63
6627 9339 0.389391 ATATTGACGTCTGGCGAGGG 59.611 55.000 17.92 0.00 44.77 4.30
6628 9340 0.968901 TATTGACGTCTGGCGAGGGT 60.969 55.000 17.92 0.00 44.77 4.34
6629 9341 1.827399 ATTGACGTCTGGCGAGGGTT 61.827 55.000 17.92 0.00 44.77 4.11
6630 9342 2.035237 TTGACGTCTGGCGAGGGTTT 62.035 55.000 17.92 0.00 44.77 3.27
6631 9343 2.027625 GACGTCTGGCGAGGGTTTG 61.028 63.158 9.35 0.00 44.77 2.93
6632 9344 2.742372 CGTCTGGCGAGGGTTTGG 60.742 66.667 0.00 0.00 44.77 3.28
6633 9345 2.747686 GTCTGGCGAGGGTTTGGA 59.252 61.111 0.00 0.00 0.00 3.53
6634 9346 1.376037 GTCTGGCGAGGGTTTGGAG 60.376 63.158 0.00 0.00 0.00 3.86
6635 9347 2.045926 CTGGCGAGGGTTTGGAGG 60.046 66.667 0.00 0.00 0.00 4.30
6636 9348 2.528127 TGGCGAGGGTTTGGAGGA 60.528 61.111 0.00 0.00 0.00 3.71
6637 9349 1.915078 CTGGCGAGGGTTTGGAGGAT 61.915 60.000 0.00 0.00 0.00 3.24
6638 9350 1.153147 GGCGAGGGTTTGGAGGATC 60.153 63.158 0.00 0.00 0.00 3.36
6639 9351 1.521681 GCGAGGGTTTGGAGGATCG 60.522 63.158 0.00 0.00 34.37 3.69
6640 9352 1.144057 CGAGGGTTTGGAGGATCGG 59.856 63.158 0.00 0.00 34.37 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 84 2.354003 GGTCACATGAGGCCCAAATTTG 60.354 50.000 11.40 11.40 0.00 2.32
118 371 5.181245 ACCAATAAAGACGAACACCTTCATG 59.819 40.000 0.00 0.00 0.00 3.07
155 408 2.152016 GTGCTAGGAAGACAACCAACC 58.848 52.381 0.00 0.00 0.00 3.77
163 416 2.347731 CCGAAAAGGTGCTAGGAAGAC 58.652 52.381 0.00 0.00 34.51 3.01
177 430 4.262592 GGGGAGAACTAGTTGTACCGAAAA 60.263 45.833 24.00 0.00 37.70 2.29
480 1319 4.403734 GGACTCCAAATGGTTGACCTAAA 58.596 43.478 1.34 0.00 36.83 1.85
483 1322 1.075536 GGGACTCCAAATGGTTGACCT 59.924 52.381 1.34 0.00 36.83 3.85
623 1692 6.110707 TCGTAGATTGGGTAGAACATTTTCC 58.889 40.000 0.00 0.00 31.28 3.13
689 1760 2.113860 AGACAATCAACATGGGACGG 57.886 50.000 0.00 0.00 0.00 4.79
737 1808 8.683615 TCCGATCAAACGTATATATCTAGCAAT 58.316 33.333 0.00 0.00 0.00 3.56
739 1810 7.619964 TCCGATCAAACGTATATATCTAGCA 57.380 36.000 0.00 0.00 0.00 3.49
740 1811 7.113684 GCATCCGATCAAACGTATATATCTAGC 59.886 40.741 0.00 0.00 0.00 3.42
741 1812 8.346300 AGCATCCGATCAAACGTATATATCTAG 58.654 37.037 0.00 0.00 0.00 2.43
742 1813 8.129211 CAGCATCCGATCAAACGTATATATCTA 58.871 37.037 0.00 0.00 0.00 1.98
743 1814 6.975197 CAGCATCCGATCAAACGTATATATCT 59.025 38.462 0.00 0.00 0.00 1.98
744 1815 6.199154 CCAGCATCCGATCAAACGTATATATC 59.801 42.308 0.00 0.00 0.00 1.63
745 1816 6.042777 CCAGCATCCGATCAAACGTATATAT 58.957 40.000 0.00 0.00 0.00 0.86
747 1818 4.021456 TCCAGCATCCGATCAAACGTATAT 60.021 41.667 0.00 0.00 0.00 0.86
748 1819 3.319689 TCCAGCATCCGATCAAACGTATA 59.680 43.478 0.00 0.00 0.00 1.47
749 1820 2.102420 TCCAGCATCCGATCAAACGTAT 59.898 45.455 0.00 0.00 0.00 3.06
750 1821 1.478916 TCCAGCATCCGATCAAACGTA 59.521 47.619 0.00 0.00 0.00 3.57
751 1822 0.249120 TCCAGCATCCGATCAAACGT 59.751 50.000 0.00 0.00 0.00 3.99
752 1823 0.933097 CTCCAGCATCCGATCAAACG 59.067 55.000 0.00 0.00 0.00 3.60
754 1825 1.203237 TCCTCCAGCATCCGATCAAA 58.797 50.000 0.00 0.00 0.00 2.69
756 1827 0.755079 CTTCCTCCAGCATCCGATCA 59.245 55.000 0.00 0.00 0.00 2.92
757 1828 1.043816 TCTTCCTCCAGCATCCGATC 58.956 55.000 0.00 0.00 0.00 3.69
758 1829 1.415659 CTTCTTCCTCCAGCATCCGAT 59.584 52.381 0.00 0.00 0.00 4.18
783 2064 0.182537 TTCATATCCTTGGGGTGCCG 59.817 55.000 0.00 0.00 0.00 5.69
864 2145 8.664798 CGATTTCTTTTCTTTTTCAAAAGGGTT 58.335 29.630 11.29 0.00 44.22 4.11
868 2149 8.868916 TGGACGATTTCTTTTCTTTTTCAAAAG 58.131 29.630 5.77 5.77 45.17 2.27
905 2190 9.191995 CAACAACCCTCTTGTACAAATATTTTC 57.808 33.333 10.03 0.00 31.50 2.29
906 2191 8.147704 CCAACAACCCTCTTGTACAAATATTTT 58.852 33.333 10.03 0.00 31.50 1.82
944 3233 2.627933 ACTTGCCTACCCCAACTTCTA 58.372 47.619 0.00 0.00 0.00 2.10
947 3236 1.633945 CCTACTTGCCTACCCCAACTT 59.366 52.381 0.00 0.00 0.00 2.66
959 3248 0.460987 ATCTCGCTGTGCCTACTTGC 60.461 55.000 0.00 0.00 0.00 4.01
960 3249 2.099921 ACTATCTCGCTGTGCCTACTTG 59.900 50.000 0.00 0.00 0.00 3.16
961 3250 2.099921 CACTATCTCGCTGTGCCTACTT 59.900 50.000 0.00 0.00 0.00 2.24
962 3251 1.678627 CACTATCTCGCTGTGCCTACT 59.321 52.381 0.00 0.00 0.00 2.57
963 3252 1.676529 TCACTATCTCGCTGTGCCTAC 59.323 52.381 0.00 0.00 0.00 3.18
964 3253 2.052782 TCACTATCTCGCTGTGCCTA 57.947 50.000 0.00 0.00 0.00 3.93
965 3254 1.186200 TTCACTATCTCGCTGTGCCT 58.814 50.000 0.00 0.00 0.00 4.75
966 3255 2.131183 GATTCACTATCTCGCTGTGCC 58.869 52.381 0.00 0.00 0.00 5.01
986 3275 5.237344 GCTTTATATAGGCGCCATCCATTAG 59.763 44.000 31.54 18.23 0.00 1.73
1135 3424 5.010933 TGGCGGGATGTTGTATTTTCTTTA 58.989 37.500 0.00 0.00 0.00 1.85
1139 3428 3.632145 AGATGGCGGGATGTTGTATTTTC 59.368 43.478 0.00 0.00 0.00 2.29
1150 3439 2.039879 GGTATTGGTTAGATGGCGGGAT 59.960 50.000 0.00 0.00 0.00 3.85
1155 3444 3.142174 GAGCTGGTATTGGTTAGATGGC 58.858 50.000 0.00 0.00 0.00 4.40
1203 3493 6.672593 TCTAGGGCATATTTCCAACAAATCT 58.327 36.000 0.00 0.00 0.00 2.40
1204 3494 6.015940 CCTCTAGGGCATATTTCCAACAAATC 60.016 42.308 0.00 0.00 0.00 2.17
1205 3495 5.835280 CCTCTAGGGCATATTTCCAACAAAT 59.165 40.000 0.00 0.00 0.00 2.32
1206 3496 5.200483 CCTCTAGGGCATATTTCCAACAAA 58.800 41.667 0.00 0.00 0.00 2.83
1433 3723 7.571071 ATCATTCTCCTAATGATGTGATCCT 57.429 36.000 11.39 0.00 43.52 3.24
1497 3787 2.915463 CTCTAGCAAACGAACTACACGG 59.085 50.000 0.00 0.00 34.93 4.94
1577 3867 1.136828 ACACCCAAAGCACTCCTACA 58.863 50.000 0.00 0.00 0.00 2.74
1750 4040 4.899352 ACTCCTTAGTCACATTGAGCTT 57.101 40.909 0.00 0.00 0.00 3.74
1965 4255 3.767673 GCGGGATCTAGATACCCATGTTA 59.232 47.826 25.79 0.00 43.40 2.41
1978 4268 3.452990 TCAATAACCAACAGCGGGATCTA 59.547 43.478 0.00 0.00 0.00 1.98
2161 4451 0.613777 ATTCTTCACCTCCGGACCAC 59.386 55.000 0.00 0.00 0.00 4.16
2231 4521 0.903942 GGTGGTCCCGGTACAATACA 59.096 55.000 0.00 0.00 0.00 2.29
2716 5026 3.998672 GAACGGACGGCACCTCCA 61.999 66.667 0.00 0.00 34.01 3.86
2735 5045 0.895530 AATCACCGATGACCGAGTGT 59.104 50.000 0.00 0.00 41.76 3.55
3077 5387 0.625316 ATCAGCACCATGGGTTGCTA 59.375 50.000 24.94 15.60 37.74 3.49
3092 5402 1.531264 GCAGTTCGCAATGAGCATCAG 60.531 52.381 0.00 0.00 46.09 2.90
3152 5462 3.119602 CCAAAGTCAGAGGCATCAATGTG 60.120 47.826 0.00 0.00 0.00 3.21
3179 5489 2.933906 GCAATGCTGGGATTCAATTGTG 59.066 45.455 5.13 0.00 30.28 3.33
3526 5837 4.276678 CACCAGCAATTTCAAGAACTCTCA 59.723 41.667 0.00 0.00 0.00 3.27
3891 6202 5.231991 GCCAGTCACAACAAATGTTTACTTG 59.768 40.000 0.00 0.00 41.46 3.16
4097 6408 6.316890 GTCCTGGTTAAGTCTGTGTTTTACAA 59.683 38.462 0.00 0.00 39.20 2.41
4230 6541 7.695055 TCTCCTCTTCACATATTTGGGTTTAA 58.305 34.615 0.00 0.00 0.00 1.52
4412 6724 2.612672 CAGTCCTTGTCATGCATGCTAG 59.387 50.000 22.25 19.79 0.00 3.42
4522 6834 5.302568 TGTTGATCTGCTCCAAACAATTCTT 59.697 36.000 0.00 0.00 0.00 2.52
4544 6856 5.470098 CACCTTTACTGTTTGTCATAGCTGT 59.530 40.000 0.00 0.00 0.00 4.40
4640 6952 6.725364 TGATTTTCTCTTCTGGGCTATCTTT 58.275 36.000 0.00 0.00 0.00 2.52
4681 6993 1.378646 GGGCTTTGGACCTAGGTGC 60.379 63.158 25.53 25.53 37.73 5.01
4887 7199 2.757868 AGACTGCAGACTGTCATCCTAC 59.242 50.000 23.35 0.00 44.72 3.18
5083 7395 0.179004 TCAATTCACTTGCCGTGGGT 60.179 50.000 3.75 0.00 43.94 4.51
5084 7396 0.958091 TTCAATTCACTTGCCGTGGG 59.042 50.000 3.75 0.00 43.94 4.61
5096 7408 4.330894 GCTTATTTGCTGGCCTTTCAATTC 59.669 41.667 3.32 0.00 0.00 2.17
5105 7417 1.000171 GCCTATGCTTATTTGCTGGCC 60.000 52.381 0.00 0.00 37.97 5.36
5125 7438 1.466856 TGGCCATTGCTAAGCTTCTG 58.533 50.000 0.00 0.00 37.74 3.02
5133 7446 1.766494 CTTGGTGATGGCCATTGCTA 58.234 50.000 21.84 10.96 38.48 3.49
5152 7465 3.737172 ATGGCAACGACCGCAAGC 61.737 61.111 0.00 0.00 42.51 4.01
5157 7470 2.176546 CAAGCATGGCAACGACCG 59.823 61.111 0.00 0.00 42.51 4.79
5159 7472 0.523072 ATCACAAGCATGGCAACGAC 59.477 50.000 0.00 0.00 42.51 4.34
5163 7476 3.940852 CAGTAGTATCACAAGCATGGCAA 59.059 43.478 0.00 0.00 0.00 4.52
5173 7486 3.513515 TGGACACATGCAGTAGTATCACA 59.486 43.478 0.00 0.00 0.00 3.58
5188 7501 1.365368 CGGCGCATAACATGGACACA 61.365 55.000 10.83 0.00 0.00 3.72
5401 7714 4.284550 TCCACCACCTTGGCCTGC 62.285 66.667 3.32 0.00 42.67 4.85
5407 7720 1.785041 CGCACTTGTCCACCACCTTG 61.785 60.000 0.00 0.00 0.00 3.61
5420 7733 1.956170 CGTTGCTGGAGTCGCACTT 60.956 57.895 0.00 0.00 37.07 3.16
5530 7843 3.056179 TCGATGCATAGTTTCAGGTGTCA 60.056 43.478 0.00 0.00 0.00 3.58
5534 7847 3.134623 TGGATCGATGCATAGTTTCAGGT 59.865 43.478 16.33 0.00 0.00 4.00
5543 7856 1.623163 TACCGGTGGATCGATGCATA 58.377 50.000 22.95 8.31 0.00 3.14
5551 7864 1.883084 CGCTGCTTACCGGTGGATC 60.883 63.158 19.93 4.10 0.00 3.36
5584 7901 1.141881 CCGATTAGCACTGCCGTCT 59.858 57.895 0.00 0.00 0.00 4.18
5597 7918 0.246360 TCGACATGACTGCACCGATT 59.754 50.000 0.00 0.00 0.00 3.34
5602 7923 1.260206 CGTACTCGACATGACTGCAC 58.740 55.000 0.00 0.00 39.71 4.57
5708 8055 3.733727 CGGGTTATTGCACAACAGAAAAC 59.266 43.478 11.41 0.00 0.00 2.43
5733 8080 4.881019 ACAATACTCCAGCATAGCCTAG 57.119 45.455 0.00 0.00 0.00 3.02
5734 8081 5.394738 AGTACAATACTCCAGCATAGCCTA 58.605 41.667 0.00 0.00 32.47 3.93
5735 8082 4.227197 AGTACAATACTCCAGCATAGCCT 58.773 43.478 0.00 0.00 32.47 4.58
5736 8083 4.608948 AGTACAATACTCCAGCATAGCC 57.391 45.455 0.00 0.00 32.47 3.93
5737 8084 6.334102 AGTAGTACAATACTCCAGCATAGC 57.666 41.667 2.52 0.00 40.14 2.97
5766 8113 6.407202 AGCATTTCTTCTTCCGTAATACAGT 58.593 36.000 0.00 0.00 0.00 3.55
5828 8175 5.577835 TGTACACAAGCACAAAAGATGAAC 58.422 37.500 0.00 0.00 0.00 3.18
5838 8185 6.090763 CGATCTAGAAAATGTACACAAGCACA 59.909 38.462 0.00 0.00 0.00 4.57
5841 8188 6.237861 GGACGATCTAGAAAATGTACACAAGC 60.238 42.308 0.00 0.00 0.00 4.01
5855 8441 2.509166 ACACCAGTGGACGATCTAGA 57.491 50.000 18.40 0.00 34.19 2.43
5915 8501 0.100325 TGCAGCGGTTCAAAACTGTG 59.900 50.000 1.02 0.45 39.98 3.66
5929 8515 0.665369 GCACACCTTCACAATGCAGC 60.665 55.000 0.00 0.00 36.30 5.25
5931 8517 0.817229 TCGCACACCTTCACAATGCA 60.817 50.000 0.00 0.00 36.02 3.96
5935 8521 1.621317 TCCTATCGCACACCTTCACAA 59.379 47.619 0.00 0.00 0.00 3.33
5945 8531 2.128035 CGATGAACCTTCCTATCGCAC 58.872 52.381 0.00 0.00 36.43 5.34
5963 8549 2.951457 TTAATCCATGTCGTGAGCGA 57.049 45.000 0.00 0.00 45.79 4.93
5965 8551 6.422223 CAAACTATTAATCCATGTCGTGAGC 58.578 40.000 0.00 0.00 0.00 4.26
5967 8553 5.006261 CGCAAACTATTAATCCATGTCGTGA 59.994 40.000 0.00 0.00 0.00 4.35
5975 8561 5.932303 GGAGCTATCGCAAACTATTAATCCA 59.068 40.000 0.00 0.00 39.10 3.41
5976 8562 6.166982 AGGAGCTATCGCAAACTATTAATCC 58.833 40.000 0.00 0.00 39.10 3.01
5987 8573 3.198068 GTGATCAAAGGAGCTATCGCAA 58.802 45.455 0.00 0.00 39.10 4.85
6010 8596 2.837591 TCTCCGAAATCCCAATCACAGA 59.162 45.455 0.00 0.00 0.00 3.41
6011 8597 3.201290 CTCTCCGAAATCCCAATCACAG 58.799 50.000 0.00 0.00 0.00 3.66
6012 8598 2.680805 GCTCTCCGAAATCCCAATCACA 60.681 50.000 0.00 0.00 0.00 3.58
6013 8599 1.943340 GCTCTCCGAAATCCCAATCAC 59.057 52.381 0.00 0.00 0.00 3.06
6025 8634 3.953712 TTGTTTGTGATAGCTCTCCGA 57.046 42.857 0.00 0.00 0.00 4.55
6026 8635 5.235186 CCTAATTGTTTGTGATAGCTCTCCG 59.765 44.000 0.00 0.00 0.00 4.63
6051 8660 3.066064 CCTATCTCACACGACCTCTTCTG 59.934 52.174 0.00 0.00 0.00 3.02
6052 8661 3.283751 CCTATCTCACACGACCTCTTCT 58.716 50.000 0.00 0.00 0.00 2.85
6058 8667 1.471119 TCACCCTATCTCACACGACC 58.529 55.000 0.00 0.00 0.00 4.79
6080 8792 2.434336 AGCAGGAAAGGCGTATGTGATA 59.566 45.455 0.00 0.00 36.08 2.15
6096 8808 2.192624 CCACAAAACGTTTTCAGCAGG 58.807 47.619 22.90 15.37 0.00 4.85
6110 8822 2.240921 TGATATACTGCCAGGCCACAAA 59.759 45.455 9.64 0.00 0.00 2.83
6111 8823 1.843206 TGATATACTGCCAGGCCACAA 59.157 47.619 9.64 0.00 0.00 3.33
6112 8824 1.506025 TGATATACTGCCAGGCCACA 58.494 50.000 9.64 0.00 0.00 4.17
6113 8825 2.867109 ATGATATACTGCCAGGCCAC 57.133 50.000 9.64 0.00 0.00 5.01
6132 8844 6.993902 ACAATGTCCTCCTAGAAAAACGTTTA 59.006 34.615 15.03 0.00 0.00 2.01
6133 8845 5.826208 ACAATGTCCTCCTAGAAAAACGTTT 59.174 36.000 7.96 7.96 0.00 3.60
6134 8846 5.374071 ACAATGTCCTCCTAGAAAAACGTT 58.626 37.500 0.00 0.00 0.00 3.99
6135 8847 4.969484 ACAATGTCCTCCTAGAAAAACGT 58.031 39.130 0.00 0.00 0.00 3.99
6136 8848 5.941948 AACAATGTCCTCCTAGAAAAACG 57.058 39.130 0.00 0.00 0.00 3.60
6137 8849 6.918022 CACAAACAATGTCCTCCTAGAAAAAC 59.082 38.462 0.00 0.00 41.46 2.43
6138 8850 6.040391 CCACAAACAATGTCCTCCTAGAAAAA 59.960 38.462 0.00 0.00 41.46 1.94
6139 8851 5.534654 CCACAAACAATGTCCTCCTAGAAAA 59.465 40.000 0.00 0.00 41.46 2.29
6140 8852 5.070001 CCACAAACAATGTCCTCCTAGAAA 58.930 41.667 0.00 0.00 41.46 2.52
6141 8853 4.104102 ACCACAAACAATGTCCTCCTAGAA 59.896 41.667 0.00 0.00 41.46 2.10
6142 8854 3.650942 ACCACAAACAATGTCCTCCTAGA 59.349 43.478 0.00 0.00 41.46 2.43
6149 8861 4.582701 TGAATCACCACAAACAATGTCC 57.417 40.909 0.00 0.00 41.46 4.02
6151 8863 6.159299 TCAATGAATCACCACAAACAATGT 57.841 33.333 0.00 0.00 45.34 2.71
6155 8867 4.220382 GGGATCAATGAATCACCACAAACA 59.780 41.667 0.00 0.00 0.00 2.83
6159 8871 3.735720 TGGGATCAATGAATCACCACA 57.264 42.857 0.00 0.00 0.00 4.17
6206 8918 1.220749 GGGCGATGACCACTAGCAA 59.779 57.895 0.00 0.00 0.00 3.91
6223 8935 8.869897 CACACAGTTACATATTAAGTACAGTGG 58.130 37.037 0.00 0.00 0.00 4.00
6227 8939 8.834749 TTGCACACAGTTACATATTAAGTACA 57.165 30.769 0.00 0.00 0.00 2.90
6244 8956 0.317799 GGGTCATTGCATTGCACACA 59.682 50.000 11.66 0.00 38.71 3.72
6305 9017 6.969366 TCGATATAAAATGTGGATTTGCCTG 58.031 36.000 0.00 0.00 37.63 4.85
6331 9043 7.433131 CCGATAAGAAATCATGGTGAACATTTG 59.567 37.037 0.00 0.00 37.84 2.32
6337 9049 6.049149 GTCTCCGATAAGAAATCATGGTGAA 58.951 40.000 0.00 0.00 0.00 3.18
6381 9093 7.528996 TTATAAAATCCTAGCGGCTAGTACA 57.471 36.000 29.55 16.75 32.62 2.90
6382 9094 8.870879 CAATTATAAAATCCTAGCGGCTAGTAC 58.129 37.037 29.55 0.00 32.62 2.73
6383 9095 8.809066 TCAATTATAAAATCCTAGCGGCTAGTA 58.191 33.333 29.55 18.92 32.62 1.82
6384 9096 7.603024 GTCAATTATAAAATCCTAGCGGCTAGT 59.397 37.037 29.55 16.69 32.62 2.57
6385 9097 7.602644 TGTCAATTATAAAATCCTAGCGGCTAG 59.397 37.037 26.43 26.43 34.16 3.42
6386 9098 7.446769 TGTCAATTATAAAATCCTAGCGGCTA 58.553 34.615 9.71 9.71 0.00 3.93
6387 9099 6.296026 TGTCAATTATAAAATCCTAGCGGCT 58.704 36.000 7.98 7.98 0.00 5.52
6388 9100 6.554334 TGTCAATTATAAAATCCTAGCGGC 57.446 37.500 0.00 0.00 0.00 6.53
6389 9101 8.230486 GTGATGTCAATTATAAAATCCTAGCGG 58.770 37.037 0.00 0.00 0.00 5.52
6390 9102 7.952101 CGTGATGTCAATTATAAAATCCTAGCG 59.048 37.037 0.00 0.00 0.00 4.26
6391 9103 8.230486 CCGTGATGTCAATTATAAAATCCTAGC 58.770 37.037 0.00 0.00 0.00 3.42
6392 9104 9.273016 ACCGTGATGTCAATTATAAAATCCTAG 57.727 33.333 0.00 0.00 0.00 3.02
6394 9106 9.052759 GTACCGTGATGTCAATTATAAAATCCT 57.947 33.333 0.00 0.00 0.00 3.24
6395 9107 8.832521 TGTACCGTGATGTCAATTATAAAATCC 58.167 33.333 0.00 0.00 0.00 3.01
6408 9120 9.286946 GCTAGTTATATAATGTACCGTGATGTC 57.713 37.037 0.00 0.00 0.00 3.06
6409 9121 9.021807 AGCTAGTTATATAATGTACCGTGATGT 57.978 33.333 0.00 0.00 0.00 3.06
6412 9124 9.730705 ACTAGCTAGTTATATAATGTACCGTGA 57.269 33.333 20.95 0.00 31.13 4.35
6426 9138 9.953565 TTTTGTTATGGTGAACTAGCTAGTTAT 57.046 29.630 33.53 25.41 45.84 1.89
6427 9139 9.953565 ATTTTGTTATGGTGAACTAGCTAGTTA 57.046 29.630 33.53 21.17 45.84 2.24
6429 9141 9.379791 GTATTTTGTTATGGTGAACTAGCTAGT 57.620 33.333 20.95 20.95 38.39 2.57
6430 9142 9.378551 TGTATTTTGTTATGGTGAACTAGCTAG 57.621 33.333 19.44 19.44 0.00 3.42
6431 9143 9.158233 GTGTATTTTGTTATGGTGAACTAGCTA 57.842 33.333 0.00 0.00 0.00 3.32
6432 9144 7.883311 AGTGTATTTTGTTATGGTGAACTAGCT 59.117 33.333 0.00 0.00 0.00 3.32
6433 9145 8.040716 AGTGTATTTTGTTATGGTGAACTAGC 57.959 34.615 0.00 0.00 0.00 3.42
6435 9147 9.999660 TGTAGTGTATTTTGTTATGGTGAACTA 57.000 29.630 0.00 0.00 0.00 2.24
6436 9148 8.911918 TGTAGTGTATTTTGTTATGGTGAACT 57.088 30.769 0.00 0.00 0.00 3.01
6439 9151 9.104965 GCTATGTAGTGTATTTTGTTATGGTGA 57.895 33.333 0.00 0.00 0.00 4.02
6440 9152 9.109393 AGCTATGTAGTGTATTTTGTTATGGTG 57.891 33.333 0.00 0.00 0.00 4.17
6446 9158 9.938280 TGAACTAGCTATGTAGTGTATTTTGTT 57.062 29.630 0.00 0.00 33.35 2.83
6447 9159 9.367444 GTGAACTAGCTATGTAGTGTATTTTGT 57.633 33.333 0.00 0.00 33.35 2.83
6448 9160 8.818057 GGTGAACTAGCTATGTAGTGTATTTTG 58.182 37.037 0.00 0.00 33.35 2.44
6449 9161 8.759782 AGGTGAACTAGCTATGTAGTGTATTTT 58.240 33.333 0.00 0.00 34.81 1.82
6450 9162 8.307582 AGGTGAACTAGCTATGTAGTGTATTT 57.692 34.615 0.00 0.00 34.81 1.40
6451 9163 7.899648 AGGTGAACTAGCTATGTAGTGTATT 57.100 36.000 0.00 0.00 34.81 1.89
6452 9164 7.899648 AAGGTGAACTAGCTATGTAGTGTAT 57.100 36.000 0.00 0.00 35.72 2.29
6453 9165 7.013083 GCTAAGGTGAACTAGCTATGTAGTGTA 59.987 40.741 0.00 0.00 35.72 2.90
6454 9166 6.183360 GCTAAGGTGAACTAGCTATGTAGTGT 60.183 42.308 0.00 0.00 35.72 3.55
6455 9167 6.210078 GCTAAGGTGAACTAGCTATGTAGTG 58.790 44.000 0.00 0.00 35.72 2.74
6456 9168 5.302313 GGCTAAGGTGAACTAGCTATGTAGT 59.698 44.000 0.00 0.00 35.72 2.73
6457 9169 5.302059 TGGCTAAGGTGAACTAGCTATGTAG 59.698 44.000 0.00 0.00 35.72 2.74
6458 9170 5.205821 TGGCTAAGGTGAACTAGCTATGTA 58.794 41.667 0.00 0.00 35.72 2.29
6459 9171 4.030913 TGGCTAAGGTGAACTAGCTATGT 58.969 43.478 0.00 0.00 35.72 2.29
6460 9172 4.502259 CCTGGCTAAGGTGAACTAGCTATG 60.502 50.000 0.00 0.00 41.74 2.23
6461 9173 3.643792 CCTGGCTAAGGTGAACTAGCTAT 59.356 47.826 0.00 0.00 41.74 2.97
6462 9174 3.031736 CCTGGCTAAGGTGAACTAGCTA 58.968 50.000 0.00 0.00 41.74 3.32
6463 9175 1.834263 CCTGGCTAAGGTGAACTAGCT 59.166 52.381 0.00 0.00 41.74 3.32
6464 9176 2.317530 CCTGGCTAAGGTGAACTAGC 57.682 55.000 0.00 0.00 41.74 3.42
6485 9197 2.290021 CCCCCAAATCCTGGAGGAGC 62.290 65.000 1.52 0.00 46.38 4.70
6486 9198 1.925888 CCCCCAAATCCTGGAGGAG 59.074 63.158 1.52 0.00 46.38 3.69
6487 9199 2.316586 GCCCCCAAATCCTGGAGGA 61.317 63.158 1.52 0.00 46.38 3.71
6491 9203 2.042639 CTGGCCCCCAAATCCTGG 60.043 66.667 0.00 0.00 45.97 4.45
6492 9204 2.761213 GCTGGCCCCCAAATCCTG 60.761 66.667 0.00 0.00 30.80 3.86
6493 9205 4.447342 CGCTGGCCCCCAAATCCT 62.447 66.667 0.00 0.00 30.80 3.24
6504 9216 4.183686 ATTGTCATGCGCGCTGGC 62.184 61.111 33.29 26.98 0.00 4.85
6505 9217 2.023741 GATTGTCATGCGCGCTGG 59.976 61.111 33.29 23.36 0.00 4.85
6506 9218 0.928451 CATGATTGTCATGCGCGCTG 60.928 55.000 33.29 25.65 46.37 5.18
6507 9219 1.354155 CATGATTGTCATGCGCGCT 59.646 52.632 33.29 15.19 46.37 5.92
6508 9220 3.898010 CATGATTGTCATGCGCGC 58.102 55.556 27.26 27.26 46.37 6.86
6514 9226 1.210234 TGAGGTCGCCATGATTGTCAT 59.790 47.619 0.00 0.00 37.65 3.06
6515 9227 0.612744 TGAGGTCGCCATGATTGTCA 59.387 50.000 0.00 0.00 0.00 3.58
6516 9228 1.959042 ATGAGGTCGCCATGATTGTC 58.041 50.000 0.00 0.00 0.00 3.18
6517 9229 2.292267 GAATGAGGTCGCCATGATTGT 58.708 47.619 0.00 0.00 0.00 2.71
6518 9230 1.262417 CGAATGAGGTCGCCATGATTG 59.738 52.381 0.00 0.00 33.66 2.67
6519 9231 1.586422 CGAATGAGGTCGCCATGATT 58.414 50.000 0.00 0.00 33.66 2.57
6520 9232 0.250038 CCGAATGAGGTCGCCATGAT 60.250 55.000 0.00 0.00 39.74 2.45
6521 9233 1.143838 CCGAATGAGGTCGCCATGA 59.856 57.895 0.00 0.00 39.74 3.07
6522 9234 2.537560 GCCGAATGAGGTCGCCATG 61.538 63.158 0.00 0.00 39.74 3.66
6523 9235 2.203070 GCCGAATGAGGTCGCCAT 60.203 61.111 0.00 0.00 39.74 4.40
6524 9236 4.467084 GGCCGAATGAGGTCGCCA 62.467 66.667 0.00 0.00 39.74 5.69
6528 9240 3.195698 GCACGGCCGAATGAGGTC 61.196 66.667 35.90 3.57 0.00 3.85
6540 9252 3.803082 CAGATTGTGGCCGCACGG 61.803 66.667 21.09 5.49 38.57 4.94
6541 9253 4.465512 GCAGATTGTGGCCGCACG 62.466 66.667 21.09 9.15 0.00 5.34
6542 9254 2.533391 GAAGCAGATTGTGGCCGCAC 62.533 60.000 21.09 8.88 0.00 5.34
6543 9255 2.282391 AAGCAGATTGTGGCCGCA 60.282 55.556 16.89 16.89 0.00 5.69
6544 9256 0.744414 TAGAAGCAGATTGTGGCCGC 60.744 55.000 10.11 10.11 0.00 6.53
6545 9257 1.009829 GTAGAAGCAGATTGTGGCCG 58.990 55.000 0.00 0.00 0.00 6.13
6546 9258 1.009829 CGTAGAAGCAGATTGTGGCC 58.990 55.000 0.00 0.00 0.00 5.36
6547 9259 0.375106 GCGTAGAAGCAGATTGTGGC 59.625 55.000 0.00 0.00 37.05 5.01
6548 9260 0.647410 CGCGTAGAAGCAGATTGTGG 59.353 55.000 0.00 0.00 36.85 4.17
6549 9261 0.647410 CCGCGTAGAAGCAGATTGTG 59.353 55.000 4.92 0.00 36.85 3.33
6550 9262 1.084370 GCCGCGTAGAAGCAGATTGT 61.084 55.000 4.92 0.00 36.85 2.71
6551 9263 1.638467 GCCGCGTAGAAGCAGATTG 59.362 57.895 4.92 0.00 36.85 2.67
6552 9264 1.521681 GGCCGCGTAGAAGCAGATT 60.522 57.895 4.92 0.00 36.85 2.40
6553 9265 2.107141 GGCCGCGTAGAAGCAGAT 59.893 61.111 4.92 0.00 36.85 2.90
6554 9266 2.443260 TTTGGCCGCGTAGAAGCAGA 62.443 55.000 4.92 0.00 36.85 4.26
6555 9267 1.369091 ATTTGGCCGCGTAGAAGCAG 61.369 55.000 4.92 0.00 36.85 4.24
6556 9268 1.376683 ATTTGGCCGCGTAGAAGCA 60.377 52.632 4.92 0.00 36.85 3.91
6557 9269 1.062525 CATTTGGCCGCGTAGAAGC 59.937 57.895 4.92 0.00 0.00 3.86
6558 9270 1.299541 ATCATTTGGCCGCGTAGAAG 58.700 50.000 4.92 0.00 0.00 2.85
6559 9271 1.668751 GAATCATTTGGCCGCGTAGAA 59.331 47.619 4.92 0.00 0.00 2.10
6560 9272 1.134521 AGAATCATTTGGCCGCGTAGA 60.135 47.619 4.92 0.00 0.00 2.59
6561 9273 1.299541 AGAATCATTTGGCCGCGTAG 58.700 50.000 4.92 0.00 0.00 3.51
6562 9274 1.400142 CAAGAATCATTTGGCCGCGTA 59.600 47.619 4.92 0.00 0.00 4.42
6563 9275 0.171007 CAAGAATCATTTGGCCGCGT 59.829 50.000 4.92 0.00 0.00 6.01
6564 9276 0.526096 CCAAGAATCATTTGGCCGCG 60.526 55.000 0.00 0.00 38.73 6.46
6565 9277 0.179103 CCCAAGAATCATTTGGCCGC 60.179 55.000 0.00 0.00 43.00 6.53
6566 9278 0.179103 GCCCAAGAATCATTTGGCCG 60.179 55.000 0.00 0.00 43.00 6.13
6567 9279 1.137675 GAGCCCAAGAATCATTTGGCC 59.862 52.381 0.00 0.00 43.00 5.36
6568 9280 1.137675 GGAGCCCAAGAATCATTTGGC 59.862 52.381 0.00 0.00 43.00 4.52
6569 9281 1.758862 GGGAGCCCAAGAATCATTTGG 59.241 52.381 0.00 0.00 43.77 3.28
6570 9282 1.406539 CGGGAGCCCAAGAATCATTTG 59.593 52.381 6.34 0.00 35.37 2.32
6571 9283 1.686115 CCGGGAGCCCAAGAATCATTT 60.686 52.381 6.34 0.00 35.37 2.32
6572 9284 0.106519 CCGGGAGCCCAAGAATCATT 60.107 55.000 6.34 0.00 35.37 2.57
6573 9285 1.533711 CCGGGAGCCCAAGAATCAT 59.466 57.895 6.34 0.00 35.37 2.45
6574 9286 2.998097 CCGGGAGCCCAAGAATCA 59.002 61.111 6.34 0.00 35.37 2.57
6575 9287 2.517166 GCCGGGAGCCCAAGAATC 60.517 66.667 2.18 0.00 35.37 2.52
6592 9304 0.535780 ATATGGTCCACGCTGCATGG 60.536 55.000 8.75 8.75 38.71 3.66
6593 9305 1.002142 CAATATGGTCCACGCTGCATG 60.002 52.381 0.00 0.00 0.00 4.06
6594 9306 1.134128 TCAATATGGTCCACGCTGCAT 60.134 47.619 0.00 0.00 0.00 3.96
6595 9307 0.251634 TCAATATGGTCCACGCTGCA 59.748 50.000 0.00 0.00 0.00 4.41
6596 9308 0.657840 GTCAATATGGTCCACGCTGC 59.342 55.000 0.00 0.00 0.00 5.25
6597 9309 0.930310 CGTCAATATGGTCCACGCTG 59.070 55.000 0.00 0.00 0.00 5.18
6598 9310 0.535335 ACGTCAATATGGTCCACGCT 59.465 50.000 0.00 0.00 33.73 5.07
6599 9311 0.928229 GACGTCAATATGGTCCACGC 59.072 55.000 11.55 0.00 33.73 5.34
6600 9312 2.193447 CAGACGTCAATATGGTCCACG 58.807 52.381 19.50 0.00 36.54 4.94
6601 9313 2.550978 CCAGACGTCAATATGGTCCAC 58.449 52.381 19.50 0.00 0.00 4.02
6602 9314 1.134521 GCCAGACGTCAATATGGTCCA 60.135 52.381 19.50 0.00 35.17 4.02
6603 9315 1.583054 GCCAGACGTCAATATGGTCC 58.417 55.000 19.50 1.11 35.17 4.46
6604 9316 1.202371 TCGCCAGACGTCAATATGGTC 60.202 52.381 19.50 11.16 44.19 4.02
6605 9317 0.821517 TCGCCAGACGTCAATATGGT 59.178 50.000 19.50 0.00 44.19 3.55
6606 9318 1.491670 CTCGCCAGACGTCAATATGG 58.508 55.000 19.50 17.14 44.19 2.74
6607 9319 1.491670 CCTCGCCAGACGTCAATATG 58.508 55.000 19.50 6.95 44.19 1.78
6608 9320 0.389391 CCCTCGCCAGACGTCAATAT 59.611 55.000 19.50 0.00 44.19 1.28
6609 9321 0.968901 ACCCTCGCCAGACGTCAATA 60.969 55.000 19.50 0.00 44.19 1.90
6610 9322 1.827399 AACCCTCGCCAGACGTCAAT 61.827 55.000 19.50 0.00 44.19 2.57
6611 9323 2.035237 AAACCCTCGCCAGACGTCAA 62.035 55.000 19.50 0.00 44.19 3.18
6612 9324 2.504274 AAACCCTCGCCAGACGTCA 61.504 57.895 19.50 0.00 44.19 4.35
6613 9325 2.027625 CAAACCCTCGCCAGACGTC 61.028 63.158 7.70 7.70 44.19 4.34
6614 9326 2.030562 CAAACCCTCGCCAGACGT 59.969 61.111 0.00 0.00 44.19 4.34
6615 9327 2.742372 CCAAACCCTCGCCAGACG 60.742 66.667 0.00 0.00 45.62 4.18
6616 9328 1.376037 CTCCAAACCCTCGCCAGAC 60.376 63.158 0.00 0.00 0.00 3.51
6617 9329 2.592993 CCTCCAAACCCTCGCCAGA 61.593 63.158 0.00 0.00 0.00 3.86
6618 9330 1.915078 ATCCTCCAAACCCTCGCCAG 61.915 60.000 0.00 0.00 0.00 4.85
6619 9331 1.910580 GATCCTCCAAACCCTCGCCA 61.911 60.000 0.00 0.00 0.00 5.69
6620 9332 1.153147 GATCCTCCAAACCCTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
6621 9333 1.521681 CGATCCTCCAAACCCTCGC 60.522 63.158 0.00 0.00 0.00 5.03
6622 9334 1.144057 CCGATCCTCCAAACCCTCG 59.856 63.158 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.