Multiple sequence alignment - TraesCS5D01G568600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G568600 chr5D 100.000 2364 0 0 1 2364 565708852 565711215 0.000000e+00 4366.0
1 TraesCS5D01G568600 chr5D 86.364 110 8 6 1627 1734 565716020 565716124 1.920000e-21 113.0
2 TraesCS5D01G568600 chr4A 86.708 1625 103 24 802 2364 607269812 607271385 0.000000e+00 1700.0
3 TraesCS5D01G568600 chr4A 84.353 556 66 8 54 607 607269093 607269629 2.080000e-145 525.0
4 TraesCS5D01G568600 chr4A 95.455 44 2 0 1459 1502 607275680 607275723 1.170000e-08 71.3
5 TraesCS5D01G568600 chr5B 89.382 744 51 17 1 735 707433976 707433252 0.000000e+00 911.0
6 TraesCS5D01G568600 chr5B 87.130 777 51 21 801 1555 707432961 707432212 0.000000e+00 835.0
7 TraesCS5D01G568600 chr5B 93.605 516 19 3 1852 2364 707423439 707422935 0.000000e+00 758.0
8 TraesCS5D01G568600 chr5B 86.898 519 28 20 1374 1872 707430364 707429866 1.600000e-151 545.0
9 TraesCS5D01G568600 chr5B 81.074 391 61 11 1982 2364 707411055 707410670 1.370000e-77 300.0
10 TraesCS5D01G568600 chr5B 79.147 211 27 12 1119 1323 707388540 707388341 1.910000e-26 130.0
11 TraesCS5D01G568600 chr5B 85.321 109 9 6 1627 1734 707418232 707418130 3.210000e-19 106.0
12 TraesCS5D01G568600 chr5B 91.228 57 3 2 1448 1502 707418430 707418374 2.520000e-10 76.8
13 TraesCS5D01G568600 chr1D 89.691 97 9 1 1830 1926 464750680 464750585 3.190000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G568600 chr5D 565708852 565711215 2363 False 4366.000000 4366 100.000000 1 2364 1 chr5D.!!$F1 2363
1 TraesCS5D01G568600 chr4A 607269093 607271385 2292 False 1112.500000 1700 85.530500 54 2364 2 chr4A.!!$F2 2310
2 TraesCS5D01G568600 chr5B 707429866 707433976 4110 True 763.666667 911 87.803333 1 1872 3 chr5B.!!$R5 1871
3 TraesCS5D01G568600 chr5B 707422935 707423439 504 True 758.000000 758 93.605000 1852 2364 1 chr5B.!!$R3 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 376 0.182061 TACTGGATCCGTACCGCTCT 59.818 55.0 7.39 0.0 0.0 4.09 F
568 600 0.319555 CGAAGGAGGAGCGAAACACA 60.320 55.0 0.00 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1190 1478 0.397187 ACTAGGCCGAGATCTAGCGA 59.603 55.000 20.86 1.98 37.16 4.93 R
1903 4254 1.135575 CACAAAGCAAGGCTCGATTCC 60.136 52.381 0.00 0.00 38.25 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.324943 ACAAAGTGGTCGCATAGGCT 59.675 50.000 0.00 0.00 38.10 4.58
164 165 4.718143 AGCCTCCCCTAGAAGCTC 57.282 61.111 0.00 0.00 37.80 4.09
234 235 5.163804 GCGTGATGTGTTGTTAACCATATGA 60.164 40.000 3.65 0.00 0.00 2.15
371 376 0.182061 TACTGGATCCGTACCGCTCT 59.818 55.000 7.39 0.00 0.00 4.09
399 415 4.584325 GGGATTAACCAGCTCAATAATGCA 59.416 41.667 12.43 0.00 41.20 3.96
400 416 5.068987 GGGATTAACCAGCTCAATAATGCAA 59.931 40.000 12.43 0.00 41.20 4.08
401 417 6.406849 GGGATTAACCAGCTCAATAATGCAAA 60.407 38.462 12.43 0.00 41.20 3.68
402 418 6.698766 GGATTAACCAGCTCAATAATGCAAAG 59.301 38.462 0.00 0.00 38.79 2.77
403 419 3.515330 ACCAGCTCAATAATGCAAAGC 57.485 42.857 0.00 0.00 0.00 3.51
404 420 3.094572 ACCAGCTCAATAATGCAAAGCT 58.905 40.909 0.00 0.00 43.81 3.74
405 421 3.129988 ACCAGCTCAATAATGCAAAGCTC 59.870 43.478 0.00 0.00 41.19 4.09
406 422 3.380637 CCAGCTCAATAATGCAAAGCTCT 59.619 43.478 0.00 0.00 41.19 4.09
407 423 4.352039 CAGCTCAATAATGCAAAGCTCTG 58.648 43.478 0.00 0.00 41.19 3.35
408 424 3.380637 AGCTCAATAATGCAAAGCTCTGG 59.619 43.478 0.00 0.00 38.96 3.86
409 425 3.703420 CTCAATAATGCAAAGCTCTGGC 58.297 45.455 0.00 0.00 39.06 4.85
418 434 1.059913 AAAGCTCTGGCCAGTAGTGT 58.940 50.000 31.58 13.31 39.73 3.55
458 474 1.755179 AGCACTCACATAATGGCCAC 58.245 50.000 8.16 0.00 0.00 5.01
463 479 0.550914 TCACATAATGGCCACCCCTC 59.449 55.000 8.16 0.00 0.00 4.30
466 482 1.645919 ACATAATGGCCACCCCTCTTT 59.354 47.619 8.16 0.00 0.00 2.52
490 506 5.362717 TGTTTCTTGGACAGTTAGACAGAGA 59.637 40.000 0.00 0.00 0.00 3.10
504 536 1.271762 ACAGAGAGCATGCAACATGGT 60.272 47.619 21.98 11.72 0.00 3.55
509 541 1.479323 GAGCATGCAACATGGTTGGAT 59.521 47.619 21.98 9.84 0.00 3.41
510 542 1.206132 AGCATGCAACATGGTTGGATG 59.794 47.619 28.17 28.17 46.59 3.51
511 543 1.741055 GCATGCAACATGGTTGGATGG 60.741 52.381 30.94 19.36 44.84 3.51
512 544 1.826096 CATGCAACATGGTTGGATGGA 59.174 47.619 26.14 0.04 42.23 3.41
513 545 2.234896 TGCAACATGGTTGGATGGAT 57.765 45.000 10.73 0.00 0.00 3.41
514 546 1.826096 TGCAACATGGTTGGATGGATG 59.174 47.619 10.73 0.00 0.00 3.51
515 547 1.137479 GCAACATGGTTGGATGGATGG 59.863 52.381 10.73 0.00 0.00 3.51
516 548 2.459644 CAACATGGTTGGATGGATGGT 58.540 47.619 0.00 0.00 0.00 3.55
517 549 2.833338 CAACATGGTTGGATGGATGGTT 59.167 45.455 0.00 0.00 0.00 3.67
518 550 2.738743 ACATGGTTGGATGGATGGTTC 58.261 47.619 0.00 0.00 0.00 3.62
519 551 2.042842 ACATGGTTGGATGGATGGTTCA 59.957 45.455 0.00 0.00 0.00 3.18
520 552 2.988636 TGGTTGGATGGATGGTTCAA 57.011 45.000 0.00 0.00 0.00 2.69
521 553 3.251016 TGGTTGGATGGATGGTTCAAA 57.749 42.857 0.00 0.00 0.00 2.69
568 600 0.319555 CGAAGGAGGAGCGAAACACA 60.320 55.000 0.00 0.00 0.00 3.72
569 601 1.149148 GAAGGAGGAGCGAAACACAC 58.851 55.000 0.00 0.00 0.00 3.82
570 602 0.468226 AAGGAGGAGCGAAACACACA 59.532 50.000 0.00 0.00 0.00 3.72
607 639 4.413189 TGGATGGATGCTGATCTAGGAAAA 59.587 41.667 0.00 0.00 0.00 2.29
609 641 5.221803 GGATGGATGCTGATCTAGGAAAAGA 60.222 44.000 0.00 0.00 0.00 2.52
612 644 6.118170 TGGATGCTGATCTAGGAAAAGAAAG 58.882 40.000 0.00 0.00 0.00 2.62
614 646 6.038050 GGATGCTGATCTAGGAAAAGAAAGTG 59.962 42.308 0.00 0.00 0.00 3.16
615 647 6.114187 TGCTGATCTAGGAAAAGAAAGTGA 57.886 37.500 0.00 0.00 0.00 3.41
616 648 6.533730 TGCTGATCTAGGAAAAGAAAGTGAA 58.466 36.000 0.00 0.00 0.00 3.18
617 649 6.998074 TGCTGATCTAGGAAAAGAAAGTGAAA 59.002 34.615 0.00 0.00 0.00 2.69
618 650 7.667219 TGCTGATCTAGGAAAAGAAAGTGAAAT 59.333 33.333 0.00 0.00 0.00 2.17
752 998 9.965824 AATAAGTTTGTAAGAATGAACTTGGTG 57.034 29.630 9.79 0.00 33.24 4.17
799 1045 5.104900 TGAGGAGACCTTAGTGGCTAATTTC 60.105 44.000 0.00 0.00 40.22 2.17
815 1092 6.815142 GGCTAATTTCATTTTCAGCAATGAGT 59.185 34.615 0.00 0.00 42.73 3.41
828 1107 2.839486 AATGAGTGCTCTCGTTGGAA 57.161 45.000 19.67 0.00 44.99 3.53
832 1111 1.271102 GAGTGCTCTCGTTGGAAGAGT 59.729 52.381 0.00 0.00 37.07 3.24
986 1274 8.940397 AAAAAGTATTTCCCAGAGAAGAATCA 57.060 30.769 0.00 0.00 37.28 2.57
1021 1309 3.909258 GAGAAAGACACGGCGGCGA 62.909 63.158 38.93 0.00 0.00 5.54
1116 1404 2.121963 TCCTGCAGGTTCCACCCT 60.122 61.111 31.58 0.00 39.75 4.34
1178 1466 1.395826 CCACTCCGATCCCCACTCTC 61.396 65.000 0.00 0.00 0.00 3.20
1190 1478 2.176364 CCCCACTCTCCCATCATCAATT 59.824 50.000 0.00 0.00 0.00 2.32
1201 1489 4.869297 CCCATCATCAATTCGCTAGATCTC 59.131 45.833 0.00 0.00 0.00 2.75
1207 1495 2.201921 ATTCGCTAGATCTCGGCCTA 57.798 50.000 0.00 0.00 0.00 3.93
1209 1497 0.397187 TCGCTAGATCTCGGCCTAGT 59.603 55.000 0.00 0.00 35.86 2.57
1249 1537 0.173708 GCTGCAGGTACTACGAGCTT 59.826 55.000 17.12 0.00 36.02 3.74
1357 1645 1.224039 CCTCTCCTACGACGACCCT 59.776 63.158 0.00 0.00 0.00 4.34
1364 1652 1.399791 CCTACGACGACCCTGAGTAAC 59.600 57.143 0.00 0.00 0.00 2.50
1368 1656 1.727213 CGACGACCCTGAGTAACGAAC 60.727 57.143 0.00 0.00 0.00 3.95
1369 1657 1.538950 GACGACCCTGAGTAACGAACT 59.461 52.381 0.00 0.00 42.80 3.01
1372 1660 2.097142 CGACCCTGAGTAACGAACTAGG 59.903 54.545 0.00 1.02 39.07 3.02
1380 1678 6.991531 CCTGAGTAACGAACTAGGACTAGTAT 59.008 42.308 12.05 3.74 44.96 2.12
1409 1713 0.944386 TTCCTCTGAAGCAAACGCAC 59.056 50.000 0.00 0.00 0.00 5.34
1438 1742 8.229253 TCTGTTACTTTGTACAGTCAGTAGAA 57.771 34.615 0.00 0.00 41.87 2.10
1457 1769 6.777580 AGTAGAACAAACACCCATCTGAATTT 59.222 34.615 0.00 0.00 0.00 1.82
1592 3938 3.007290 TCTCCAGATGTCTGAAACCTGTG 59.993 47.826 11.47 0.00 46.59 3.66
1655 4003 3.131709 AGTGTGTCATGACTGAAAGGG 57.868 47.619 25.55 0.00 39.30 3.95
1662 4010 6.549364 TGTGTCATGACTGAAAGGGTAAAATT 59.451 34.615 25.55 0.00 39.30 1.82
1663 4011 7.721842 TGTGTCATGACTGAAAGGGTAAAATTA 59.278 33.333 25.55 0.00 39.30 1.40
1664 4012 8.573035 GTGTCATGACTGAAAGGGTAAAATTAA 58.427 33.333 25.55 0.00 39.30 1.40
1688 4036 8.707938 AAAATCTTTCCTTTTGAGTTTGACAG 57.292 30.769 0.00 0.00 28.92 3.51
1732 4080 2.957006 GCCGTCAGAAATCCTAGTCCTA 59.043 50.000 0.00 0.00 0.00 2.94
1735 4083 5.243283 GCCGTCAGAAATCCTAGTCCTATTA 59.757 44.000 0.00 0.00 0.00 0.98
1892 4243 1.002468 CATTTGCGCCCAGTATAGTGC 60.002 52.381 4.18 0.00 39.93 4.40
1903 4254 4.687948 CCCAGTATAGTGCATCGAATGAAG 59.312 45.833 1.67 0.00 0.00 3.02
1926 4277 1.370900 CGAGCCTTGCTTTGTGTGC 60.371 57.895 0.00 0.00 39.88 4.57
1938 4289 4.605967 GTGTGCGCACGGGTGTTG 62.606 66.667 33.22 0.00 35.75 3.33
1940 4291 3.353836 GTGCGCACGGGTGTTGAT 61.354 61.111 26.77 0.00 0.00 2.57
1954 4305 5.065988 CGGGTGTTGATCTTATAACTTTGGG 59.934 44.000 0.00 0.00 0.00 4.12
2353 4716 4.469945 ACCCAGATACCCATTACATATCCG 59.530 45.833 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.254546 ATGCGACCACTTTGTCAAGA 57.745 45.000 0.00 0.00 34.88 3.02
36 37 5.108517 GCACCTTTTGATCACAACTTTTCA 58.891 37.500 0.00 0.00 35.63 2.69
192 193 3.968096 CACGCACACACAACTAAAGAATG 59.032 43.478 0.00 0.00 0.00 2.67
234 235 9.799106 ACTAGCTCATTAATTACAATTATGGCT 57.201 29.630 0.00 11.46 31.47 4.75
313 318 3.424433 GGATGAATTGAACCGTTGACGAC 60.424 47.826 4.91 0.00 43.02 4.34
323 328 5.241506 TCAAAGACACCAGGATGAATTGAAC 59.758 40.000 0.00 0.00 39.69 3.18
327 332 5.573219 TCATCAAAGACACCAGGATGAATT 58.427 37.500 0.00 0.00 40.80 2.17
371 376 4.919774 TTGAGCTGGTTAATCCCACTAA 57.080 40.909 0.00 0.00 34.77 2.24
384 389 3.380637 AGAGCTTTGCATTATTGAGCTGG 59.619 43.478 0.00 0.00 43.22 4.85
399 415 1.002544 GACACTACTGGCCAGAGCTTT 59.997 52.381 39.19 18.87 39.73 3.51
400 416 0.610687 GACACTACTGGCCAGAGCTT 59.389 55.000 39.19 19.28 39.73 3.74
401 417 1.261238 GGACACTACTGGCCAGAGCT 61.261 60.000 39.19 19.67 46.61 4.09
402 418 1.219393 GGACACTACTGGCCAGAGC 59.781 63.158 39.19 18.78 46.61 4.09
408 424 3.955650 TTTGTCTAGGACACTACTGGC 57.044 47.619 0.00 0.00 42.60 4.85
409 425 4.822026 CCTTTTGTCTAGGACACTACTGG 58.178 47.826 0.00 0.00 42.60 4.00
418 434 4.335416 CTTGGATTGCCTTTTGTCTAGGA 58.665 43.478 0.00 0.00 34.56 2.94
458 474 2.887152 CTGTCCAAGAAACAAAGAGGGG 59.113 50.000 0.00 0.00 0.00 4.79
463 479 6.538742 TCTGTCTAACTGTCCAAGAAACAAAG 59.461 38.462 0.00 0.00 0.00 2.77
466 482 5.362717 TCTCTGTCTAACTGTCCAAGAAACA 59.637 40.000 0.00 0.00 0.00 2.83
490 506 1.206132 CATCCAACCATGTTGCATGCT 59.794 47.619 20.33 0.00 0.00 3.79
504 536 4.111255 TGACTTTGAACCATCCATCCAA 57.889 40.909 0.00 0.00 0.00 3.53
509 541 3.546724 TCGTTTGACTTTGAACCATCCA 58.453 40.909 0.00 0.00 0.00 3.41
510 542 3.609409 GCTCGTTTGACTTTGAACCATCC 60.609 47.826 0.00 0.00 0.00 3.51
511 543 3.251004 AGCTCGTTTGACTTTGAACCATC 59.749 43.478 0.00 0.00 0.00 3.51
512 544 3.214328 AGCTCGTTTGACTTTGAACCAT 58.786 40.909 0.00 0.00 0.00 3.55
513 545 2.639065 AGCTCGTTTGACTTTGAACCA 58.361 42.857 0.00 0.00 0.00 3.67
514 546 3.364068 GCTAGCTCGTTTGACTTTGAACC 60.364 47.826 7.70 0.00 0.00 3.62
515 547 3.247648 TGCTAGCTCGTTTGACTTTGAAC 59.752 43.478 17.23 0.00 0.00 3.18
516 548 3.247648 GTGCTAGCTCGTTTGACTTTGAA 59.752 43.478 17.23 0.00 0.00 2.69
517 549 2.800544 GTGCTAGCTCGTTTGACTTTGA 59.199 45.455 17.23 0.00 0.00 2.69
518 550 2.543848 TGTGCTAGCTCGTTTGACTTTG 59.456 45.455 17.23 0.00 0.00 2.77
519 551 2.833794 TGTGCTAGCTCGTTTGACTTT 58.166 42.857 17.23 0.00 0.00 2.66
520 552 2.526304 TGTGCTAGCTCGTTTGACTT 57.474 45.000 17.23 0.00 0.00 3.01
521 553 2.408050 CTTGTGCTAGCTCGTTTGACT 58.592 47.619 17.23 0.00 0.00 3.41
578 610 4.109320 AGATCAGCATCCATCCATCCATA 58.891 43.478 0.00 0.00 0.00 2.74
607 639 7.039714 GGAGTATTTGGTTCCATTTCACTTTCT 60.040 37.037 0.00 0.00 0.00 2.52
609 641 6.553100 TGGAGTATTTGGTTCCATTTCACTTT 59.447 34.615 0.00 0.00 36.13 2.66
612 644 5.975693 TGGAGTATTTGGTTCCATTTCAC 57.024 39.130 0.00 0.00 36.13 3.18
614 646 5.105392 TGCATGGAGTATTTGGTTCCATTTC 60.105 40.000 2.62 0.12 46.81 2.17
615 647 4.776837 TGCATGGAGTATTTGGTTCCATTT 59.223 37.500 2.62 0.00 46.81 2.32
616 648 4.160252 GTGCATGGAGTATTTGGTTCCATT 59.840 41.667 2.62 0.00 46.81 3.16
618 650 3.088532 GTGCATGGAGTATTTGGTTCCA 58.911 45.455 0.00 0.00 44.52 3.53
647 679 4.729227 TCACACGGTGCATCTAGAATTA 57.271 40.909 8.30 0.00 32.98 1.40
657 689 1.464734 TTTTTCCTTCACACGGTGCA 58.535 45.000 8.30 0.00 32.98 4.57
769 1015 4.256920 CCACTAAGGTCTCCTCAACAATG 58.743 47.826 0.00 0.00 30.89 2.82
770 1016 3.307762 GCCACTAAGGTCTCCTCAACAAT 60.308 47.826 0.00 0.00 40.61 2.71
773 1019 1.903183 AGCCACTAAGGTCTCCTCAAC 59.097 52.381 0.00 0.00 40.61 3.18
775 1021 3.468071 TTAGCCACTAAGGTCTCCTCA 57.532 47.619 0.00 0.00 40.61 3.86
780 1026 7.669722 TGAAAATGAAATTAGCCACTAAGGTCT 59.330 33.333 0.00 0.00 33.67 3.85
786 1032 6.832520 TGCTGAAAATGAAATTAGCCACTA 57.167 33.333 0.00 0.00 33.67 2.74
815 1092 1.686587 TCAACTCTTCCAACGAGAGCA 59.313 47.619 0.00 0.00 43.50 4.26
817 1094 3.516615 GGATCAACTCTTCCAACGAGAG 58.483 50.000 0.00 0.00 44.86 3.20
828 1107 4.162690 GGCCCGCGGATCAACTCT 62.163 66.667 30.73 0.00 0.00 3.24
832 1111 4.562425 GATGGGCCCGCGGATCAA 62.562 66.667 30.73 12.41 0.00 2.57
858 1137 4.088164 TGGGCCACCATATGAGCT 57.912 55.556 0.00 0.00 43.37 4.09
879 1158 0.531974 TTTGCGTCGGCCATCCTATC 60.532 55.000 2.24 0.00 38.85 2.08
986 1274 1.006043 TCTCCATCGGTCACTTCTCCT 59.994 52.381 0.00 0.00 0.00 3.69
1178 1466 4.829968 AGATCTAGCGAATTGATGATGGG 58.170 43.478 0.00 0.00 0.00 4.00
1190 1478 0.397187 ACTAGGCCGAGATCTAGCGA 59.603 55.000 20.86 1.98 37.16 4.93
1201 1489 0.806102 CGTGGTCAATCACTAGGCCG 60.806 60.000 0.00 0.00 35.63 6.13
1207 1495 1.374252 GTCGCCGTGGTCAATCACT 60.374 57.895 0.00 0.00 35.63 3.41
1209 1497 2.431771 CGTCGCCGTGGTCAATCA 60.432 61.111 0.00 0.00 0.00 2.57
1267 1555 1.138047 CGTAGAACTTGGCGGCGTAG 61.138 60.000 9.37 6.94 0.00 3.51
1333 1621 0.733729 CGTCGTAGGAGAGGTGGAAG 59.266 60.000 0.00 0.00 0.00 3.46
1357 1645 6.259608 GCATACTAGTCCTAGTTCGTTACTCA 59.740 42.308 11.94 0.00 43.35 3.41
1364 1652 4.036971 AGCAAGCATACTAGTCCTAGTTCG 59.963 45.833 11.94 5.61 43.35 3.95
1368 1656 5.269505 ACAAGCAAGCATACTAGTCCTAG 57.730 43.478 0.00 0.00 39.04 3.02
1369 1657 5.395324 GGAACAAGCAAGCATACTAGTCCTA 60.395 44.000 0.00 0.00 0.00 2.94
1372 1660 4.508662 AGGAACAAGCAAGCATACTAGTC 58.491 43.478 0.00 0.00 0.00 2.59
1380 1678 2.224606 CTTCAGAGGAACAAGCAAGCA 58.775 47.619 0.00 0.00 0.00 3.91
1409 1713 6.757010 ACTGACTGTACAAAGTAACAGAACAG 59.243 38.462 20.47 20.47 44.79 3.16
1438 1742 5.104982 ACACAAAATTCAGATGGGTGTTTGT 60.105 36.000 0.00 0.00 38.01 2.83
1457 1769 9.967451 TTATTCTGAACCCTGATTTATACACAA 57.033 29.630 0.00 0.00 0.00 3.33
1662 4010 9.801873 CTGTCAAACTCAAAAGGAAAGATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
1663 4011 7.278646 GCTGTCAAACTCAAAAGGAAAGATTTT 59.721 33.333 0.00 0.00 0.00 1.82
1664 4012 6.758416 GCTGTCAAACTCAAAAGGAAAGATTT 59.242 34.615 0.00 0.00 0.00 2.17
1679 4027 1.406539 CTGTGCAAAGGCTGTCAAACT 59.593 47.619 0.00 0.00 41.91 2.66
1688 4036 4.479619 CAGAATTTAGTCTGTGCAAAGGC 58.520 43.478 0.00 0.00 40.22 4.35
1892 4243 2.478134 GGCTCGATTCCTTCATTCGATG 59.522 50.000 0.00 0.00 40.69 3.84
1903 4254 1.135575 CACAAAGCAAGGCTCGATTCC 60.136 52.381 0.00 0.00 38.25 3.01
1926 4277 1.651987 ATAAGATCAACACCCGTGCG 58.348 50.000 0.00 0.00 0.00 5.34
1938 4289 3.564225 CCGGTGCCCAAAGTTATAAGATC 59.436 47.826 0.00 0.00 0.00 2.75
1940 4291 2.306512 ACCGGTGCCCAAAGTTATAAGA 59.693 45.455 6.12 0.00 0.00 2.10
1954 4305 3.438781 TCAATGACTGAATTAACCGGTGC 59.561 43.478 8.52 0.00 0.00 5.01
2046 4402 6.270463 TGTGTTGTAGACTAGGGTTTGGATAA 59.730 38.462 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.