Multiple sequence alignment - TraesCS5D01G567500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G567500 chr5D 100.000 2615 0 0 1 2615 565186040 565188654 0.000000e+00 4830.0
1 TraesCS5D01G567500 chr5B 88.230 1215 71 19 833 1999 708189610 708188420 0.000000e+00 1386.0
2 TraesCS5D01G567500 chr5B 86.716 542 61 6 2076 2615 708188421 708187889 2.240000e-165 592.0
3 TraesCS5D01G567500 chr5B 78.610 734 96 34 1 689 708190704 708189987 1.860000e-116 429.0
4 TraesCS5D01G567500 chr4A 94.598 796 21 6 1209 1999 606599100 606599878 0.000000e+00 1212.0
5 TraesCS5D01G567500 chr4A 95.393 521 23 1 2095 2615 606599890 606600409 0.000000e+00 828.0
6 TraesCS5D01G567500 chr4A 83.134 836 105 17 1055 1879 606608793 606609603 0.000000e+00 730.0
7 TraesCS5D01G567500 chr4A 84.713 314 8 10 707 1018 606598808 606599083 7.130000e-71 278.0
8 TraesCS5D01G567500 chr2D 98.780 82 1 0 1997 2078 382442502 382442421 2.100000e-31 147.0
9 TraesCS5D01G567500 chr2D 96.512 86 3 0 1992 2077 382442416 382442501 2.710000e-30 143.0
10 TraesCS5D01G567500 chr2A 96.629 89 1 2 1995 2081 413323715 413323803 2.100000e-31 147.0
11 TraesCS5D01G567500 chr1D 96.471 85 2 1 1997 2080 351919283 351919199 3.510000e-29 139.0
12 TraesCS5D01G567500 chr1D 97.561 82 1 1 1997 2077 351919201 351919282 3.510000e-29 139.0
13 TraesCS5D01G567500 chr6D 95.402 87 2 1 1996 2080 430139668 430139582 1.260000e-28 137.0
14 TraesCS5D01G567500 chr6D 78.322 143 27 4 2099 2240 188945362 188945501 3.580000e-14 89.8
15 TraesCS5D01G567500 chr7A 91.837 98 6 2 1998 2093 578987753 578987850 4.540000e-28 135.0
16 TraesCS5D01G567500 chr5A 95.349 86 3 1 1998 2083 634067153 634067237 4.540000e-28 135.0
17 TraesCS5D01G567500 chr4D 91.919 99 5 3 1983 2081 490415934 490416029 4.540000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G567500 chr5D 565186040 565188654 2614 False 4830.000000 4830 100.000000 1 2615 1 chr5D.!!$F1 2614
1 TraesCS5D01G567500 chr5B 708187889 708190704 2815 True 802.333333 1386 84.518667 1 2615 3 chr5B.!!$R1 2614
2 TraesCS5D01G567500 chr4A 606598808 606600409 1601 False 772.666667 1212 91.568000 707 2615 3 chr4A.!!$F2 1908
3 TraesCS5D01G567500 chr4A 606608793 606609603 810 False 730.000000 730 83.134000 1055 1879 1 chr4A.!!$F1 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 757 0.03759 ATGCAACTCTACCCCGCAAA 59.962 50.0 0.0 0.0 35.98 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2633 0.832135 TCTTCCTCGTGCCTTGTCCT 60.832 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.871686 AACTCATTAAAATTTCACTGTTGGAC 57.128 30.769 0.00 0.00 0.00 4.02
68 69 7.998964 TCACTGTTGGACTGAGTGAGATATATA 59.001 37.037 0.00 0.00 40.88 0.86
70 71 9.373450 ACTGTTGGACTGAGTGAGATATATATT 57.627 33.333 0.00 0.00 0.00 1.28
71 72 9.636879 CTGTTGGACTGAGTGAGATATATATTG 57.363 37.037 0.00 0.00 0.00 1.90
72 73 9.367160 TGTTGGACTGAGTGAGATATATATTGA 57.633 33.333 0.00 0.00 0.00 2.57
73 74 9.853555 GTTGGACTGAGTGAGATATATATTGAG 57.146 37.037 0.00 0.00 0.00 3.02
74 75 9.813826 TTGGACTGAGTGAGATATATATTGAGA 57.186 33.333 0.00 0.00 0.00 3.27
138 139 6.507958 TTGACAACACTGATTTCACTCAAA 57.492 33.333 0.00 0.00 0.00 2.69
195 199 6.820470 TTTGTTTCAAACACCGATTCATTC 57.180 33.333 1.28 0.00 41.97 2.67
202 206 6.743110 TCAAACACCGATTCATTCATTTCAA 58.257 32.000 0.00 0.00 0.00 2.69
239 243 9.925268 TTTCGTTAAACTCAAGTAATTTCACTC 57.075 29.630 0.00 0.00 0.00 3.51
240 244 7.780313 TCGTTAAACTCAAGTAATTTCACTCG 58.220 34.615 0.00 0.00 0.00 4.18
241 245 7.648908 TCGTTAAACTCAAGTAATTTCACTCGA 59.351 33.333 0.00 0.00 0.00 4.04
260 292 8.873830 TCACTCGATTTAAGATTTCAGACATTC 58.126 33.333 0.00 0.00 0.00 2.67
289 321 6.751514 AACATATTTCACTCACGCCAATAA 57.248 33.333 0.00 0.00 0.00 1.40
290 322 6.751514 ACATATTTCACTCACGCCAATAAA 57.248 33.333 0.00 0.00 0.00 1.40
292 324 7.027161 ACATATTTCACTCACGCCAATAAAAC 58.973 34.615 0.00 0.00 0.00 2.43
305 337 9.897744 CACGCCAATAAAACTGATTTATATCAT 57.102 29.630 3.73 0.00 42.15 2.45
325 357 6.525578 TCATATCAGGAAACTACGTTCACT 57.474 37.500 0.00 0.00 40.21 3.41
326 358 6.561614 TCATATCAGGAAACTACGTTCACTC 58.438 40.000 0.00 0.00 40.21 3.51
327 359 4.866508 ATCAGGAAACTACGTTCACTCA 57.133 40.909 0.00 0.00 40.21 3.41
328 360 4.866508 TCAGGAAACTACGTTCACTCAT 57.133 40.909 0.00 0.00 40.21 2.90
332 364 6.540914 TCAGGAAACTACGTTCACTCATTTTT 59.459 34.615 0.00 0.00 40.21 1.94
355 387 9.748708 TTTTTAAACTGATTCCACTCATTTCAG 57.251 29.630 0.00 0.00 39.70 3.02
359 391 7.587037 AACTGATTCCACTCATTTCAGAAAA 57.413 32.000 0.00 0.00 37.75 2.29
360 392 7.587037 ACTGATTCCACTCATTTCAGAAAAA 57.413 32.000 0.00 0.00 37.75 1.94
431 468 4.927049 TCCCTCTCAAAAGCTGATTTCAT 58.073 39.130 0.00 0.00 32.14 2.57
438 475 8.721019 TCTCAAAAGCTGATTTCATTTGTTTT 57.279 26.923 5.06 0.00 33.76 2.43
439 476 8.605746 TCTCAAAAGCTGATTTCATTTGTTTTG 58.394 29.630 5.06 0.00 35.79 2.44
444 481 9.777575 AAAGCTGATTTCATTTGTTTTGAAAAG 57.222 25.926 3.28 0.00 43.94 2.27
458 495 9.997482 TTGTTTTGAAAAGTAGATTACACTCAC 57.003 29.630 0.00 0.00 0.00 3.51
472 509 9.262358 AGATTACACTCACTTTAGAAAACAGAC 57.738 33.333 0.00 0.00 0.00 3.51
477 514 7.606456 ACACTCACTTTAGAAAACAGACTGAAA 59.394 33.333 10.08 0.00 0.00 2.69
572 631 2.121948 TGCTCATATTGCCAGGAGTCT 58.878 47.619 0.00 0.00 0.00 3.24
574 633 3.711190 TGCTCATATTGCCAGGAGTCTAA 59.289 43.478 0.00 0.00 0.00 2.10
577 636 6.043127 TGCTCATATTGCCAGGAGTCTAAATA 59.957 38.462 0.00 0.00 0.00 1.40
660 719 8.829373 AGGAAAGGTGAAATAAAATAGCAGAT 57.171 30.769 0.00 0.00 0.00 2.90
670 729 9.435688 GAAATAAAATAGCAGATTTGTTTGGGT 57.564 29.630 7.29 0.00 32.37 4.51
671 730 8.776376 AATAAAATAGCAGATTTGTTTGGGTG 57.224 30.769 0.00 0.00 0.00 4.61
672 731 6.418057 AAAATAGCAGATTTGTTTGGGTGA 57.582 33.333 0.00 0.00 0.00 4.02
673 732 5.649782 AATAGCAGATTTGTTTGGGTGAG 57.350 39.130 0.00 0.00 0.00 3.51
674 733 3.228188 AGCAGATTTGTTTGGGTGAGA 57.772 42.857 0.00 0.00 0.00 3.27
675 734 3.152341 AGCAGATTTGTTTGGGTGAGAG 58.848 45.455 0.00 0.00 0.00 3.20
676 735 3.149196 GCAGATTTGTTTGGGTGAGAGA 58.851 45.455 0.00 0.00 0.00 3.10
677 736 3.569701 GCAGATTTGTTTGGGTGAGAGAA 59.430 43.478 0.00 0.00 0.00 2.87
678 737 4.557496 GCAGATTTGTTTGGGTGAGAGAAC 60.557 45.833 0.00 0.00 0.00 3.01
679 738 4.580167 CAGATTTGTTTGGGTGAGAGAACA 59.420 41.667 0.00 0.00 0.00 3.18
680 739 5.242393 CAGATTTGTTTGGGTGAGAGAACAT 59.758 40.000 0.00 0.00 32.64 2.71
681 740 4.916983 TTTGTTTGGGTGAGAGAACATG 57.083 40.909 0.00 0.00 32.64 3.21
682 741 2.229792 TGTTTGGGTGAGAGAACATGC 58.770 47.619 0.00 0.00 0.00 4.06
683 742 2.229792 GTTTGGGTGAGAGAACATGCA 58.770 47.619 0.00 0.00 0.00 3.96
684 743 2.622942 GTTTGGGTGAGAGAACATGCAA 59.377 45.455 0.00 0.00 0.00 4.08
685 744 1.896220 TGGGTGAGAGAACATGCAAC 58.104 50.000 0.00 0.00 0.00 4.17
686 745 1.421268 TGGGTGAGAGAACATGCAACT 59.579 47.619 0.00 0.00 0.00 3.16
687 746 2.079925 GGGTGAGAGAACATGCAACTC 58.920 52.381 0.00 0.00 0.00 3.01
688 747 2.289945 GGGTGAGAGAACATGCAACTCT 60.290 50.000 14.00 14.00 42.59 3.24
689 748 3.055819 GGGTGAGAGAACATGCAACTCTA 60.056 47.826 14.06 4.34 40.44 2.43
690 749 3.929610 GGTGAGAGAACATGCAACTCTAC 59.070 47.826 14.06 12.30 40.44 2.59
691 750 3.929610 GTGAGAGAACATGCAACTCTACC 59.070 47.826 14.06 6.55 40.44 3.18
692 751 3.055819 TGAGAGAACATGCAACTCTACCC 60.056 47.826 14.06 6.03 40.44 3.69
693 752 2.237392 AGAGAACATGCAACTCTACCCC 59.763 50.000 12.92 0.00 38.91 4.95
694 753 1.066143 AGAACATGCAACTCTACCCCG 60.066 52.381 0.00 0.00 0.00 5.73
695 754 0.676782 AACATGCAACTCTACCCCGC 60.677 55.000 0.00 0.00 0.00 6.13
696 755 1.078497 CATGCAACTCTACCCCGCA 60.078 57.895 0.00 0.00 36.95 5.69
697 756 0.676466 CATGCAACTCTACCCCGCAA 60.676 55.000 0.00 0.00 35.98 4.85
698 757 0.037590 ATGCAACTCTACCCCGCAAA 59.962 50.000 0.00 0.00 35.98 3.68
699 758 0.179015 TGCAACTCTACCCCGCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
700 759 0.955905 GCAACTCTACCCCGCAAAAA 59.044 50.000 0.00 0.00 0.00 1.94
765 828 2.519377 TGGTGAACCACGTGACTTAG 57.481 50.000 19.30 1.55 42.01 2.18
883 1219 4.288366 TGAGTGGTGGATTCCTTGTCATTA 59.712 41.667 3.95 0.00 0.00 1.90
889 1225 5.531287 GGTGGATTCCTTGTCATTACATACC 59.469 44.000 3.95 0.00 34.97 2.73
907 1243 3.040147 ACCGTCACAGGTAGAAATGTG 57.960 47.619 0.00 0.00 46.52 3.21
938 1275 4.284860 TCGATCTGCATCCGGCCG 62.285 66.667 21.04 21.04 43.89 6.13
962 1299 2.488545 CAAGAGAAGCAGCTTCAGCATT 59.511 45.455 32.20 19.12 42.37 3.56
1018 1361 0.179129 CATGCTTTCCATGGCGAACC 60.179 55.000 6.96 0.00 46.09 3.62
1027 1370 2.579201 TGGCGAACCAGCTAGAGC 59.421 61.111 0.00 0.00 42.67 4.09
1028 1371 2.202946 GGCGAACCAGCTAGAGCC 60.203 66.667 0.00 0.00 43.38 4.70
1046 1413 1.630126 CCTAGAGCACCATGGTGGCT 61.630 60.000 39.04 34.11 42.67 4.75
1158 1525 2.274437 CACATCCACTTCTCCATCACG 58.726 52.381 0.00 0.00 0.00 4.35
1164 1531 3.376935 CTTCTCCATCACGGCGGCT 62.377 63.158 13.24 0.00 33.14 5.52
1168 1535 2.125310 CCATCACGGCGGCTAACA 60.125 61.111 13.24 0.00 0.00 2.41
1195 1562 4.451150 GCACCATGGACGGCGAGA 62.451 66.667 21.47 0.00 0.00 4.04
1638 2022 9.729281 TGACATGCATCAGTATATATTTCATGT 57.271 29.630 0.00 0.00 42.91 3.21
1677 2061 5.826586 TGTTGTGCAAATGTAGGTTTACAG 58.173 37.500 0.00 0.00 42.72 2.74
1809 2194 5.420725 TCGATTCCCTTCTTCAATCTTCA 57.579 39.130 0.00 0.00 0.00 3.02
1902 2293 0.983467 ATGTCCCATTTGGCCCAAAC 59.017 50.000 11.91 0.00 36.13 2.93
1911 2302 3.688086 GGCCCAAACGTTATGCCA 58.312 55.556 23.21 0.00 41.76 4.92
1977 2368 3.342377 TGTAGGGCATTTGTTCGATCA 57.658 42.857 0.00 0.00 0.00 2.92
1999 2391 5.694910 TCAAACGATTCTCTGGACAAACTAC 59.305 40.000 0.00 0.00 0.00 2.73
2000 2392 5.470047 AACGATTCTCTGGACAAACTACT 57.530 39.130 0.00 0.00 0.00 2.57
2001 2393 5.061920 ACGATTCTCTGGACAAACTACTC 57.938 43.478 0.00 0.00 0.00 2.59
2002 2394 4.082136 ACGATTCTCTGGACAAACTACTCC 60.082 45.833 0.00 0.00 0.00 3.85
2003 2395 4.678309 CGATTCTCTGGACAAACTACTCCC 60.678 50.000 0.00 0.00 0.00 4.30
2004 2396 3.544698 TCTCTGGACAAACTACTCCCT 57.455 47.619 0.00 0.00 0.00 4.20
2005 2397 3.432378 TCTCTGGACAAACTACTCCCTC 58.568 50.000 0.00 0.00 0.00 4.30
2006 2398 2.498078 CTCTGGACAAACTACTCCCTCC 59.502 54.545 0.00 0.00 0.00 4.30
2007 2399 1.204941 CTGGACAAACTACTCCCTCCG 59.795 57.143 0.00 0.00 0.00 4.63
2008 2400 1.264295 GGACAAACTACTCCCTCCGT 58.736 55.000 0.00 0.00 0.00 4.69
2009 2401 1.622312 GGACAAACTACTCCCTCCGTT 59.378 52.381 0.00 0.00 0.00 4.44
2010 2402 2.353505 GGACAAACTACTCCCTCCGTTC 60.354 54.545 0.00 0.00 0.00 3.95
2011 2403 1.622312 ACAAACTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
2012 2404 1.621814 CAAACTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
2013 2405 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2014 2406 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2015 2407 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2016 2408 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2017 2409 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2018 2410 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2019 2411 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2020 2412 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2021 2413 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2022 2414 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2023 2415 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2024 2416 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2025 2417 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2026 2418 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2027 2419 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2028 2420 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2029 2421 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2030 2422 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2031 2423 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2032 2424 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2033 2425 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2034 2426 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2035 2427 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2036 2428 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2037 2429 2.388121 ACTCGTCGTGGTTTTAGTTCG 58.612 47.619 0.00 0.00 0.00 3.95
2038 2430 2.033299 ACTCGTCGTGGTTTTAGTTCGA 59.967 45.455 0.00 0.00 0.00 3.71
2039 2431 3.044986 CTCGTCGTGGTTTTAGTTCGAA 58.955 45.455 0.00 0.00 32.56 3.71
2040 2432 2.788786 TCGTCGTGGTTTTAGTTCGAAC 59.211 45.455 20.71 20.71 32.56 3.95
2041 2433 2.791004 CGTCGTGGTTTTAGTTCGAACT 59.209 45.455 31.70 31.70 42.91 3.01
2042 2434 3.974401 CGTCGTGGTTTTAGTTCGAACTA 59.026 43.478 29.57 29.57 40.37 2.24
2043 2435 4.440758 CGTCGTGGTTTTAGTTCGAACTAA 59.559 41.667 35.56 35.56 46.58 2.24
2052 2444 5.888412 TTAGTTCGAACTAAAACCACGAC 57.112 39.130 36.54 7.53 45.62 4.34
2053 2445 2.791004 AGTTCGAACTAAAACCACGACG 59.209 45.455 28.80 0.00 37.52 5.12
2054 2446 2.772568 TCGAACTAAAACCACGACGA 57.227 45.000 0.00 0.00 0.00 4.20
2055 2447 2.653890 TCGAACTAAAACCACGACGAG 58.346 47.619 0.00 0.00 0.00 4.18
2056 2448 2.033299 TCGAACTAAAACCACGACGAGT 59.967 45.455 0.00 0.00 0.00 4.18
2057 2449 3.249799 TCGAACTAAAACCACGACGAGTA 59.750 43.478 0.00 0.00 0.00 2.59
2058 2450 3.974401 CGAACTAAAACCACGACGAGTAA 59.026 43.478 0.00 0.00 0.00 2.24
2059 2451 4.618489 CGAACTAAAACCACGACGAGTAAT 59.382 41.667 0.00 0.00 0.00 1.89
2060 2452 5.117592 CGAACTAAAACCACGACGAGTAATT 59.882 40.000 0.00 1.08 0.00 1.40
2061 2453 6.346040 CGAACTAAAACCACGACGAGTAATTT 60.346 38.462 0.00 0.34 0.00 1.82
2062 2454 7.148983 CGAACTAAAACCACGACGAGTAATTTA 60.149 37.037 0.00 1.47 0.00 1.40
2063 2455 7.572502 ACTAAAACCACGACGAGTAATTTAG 57.427 36.000 0.00 12.05 37.40 1.85
2064 2456 7.370383 ACTAAAACCACGACGAGTAATTTAGA 58.630 34.615 20.72 3.40 36.27 2.10
2065 2457 7.867403 ACTAAAACCACGACGAGTAATTTAGAA 59.133 33.333 20.72 1.10 36.27 2.10
2066 2458 6.457851 AAACCACGACGAGTAATTTAGAAC 57.542 37.500 0.00 0.00 0.00 3.01
2067 2459 4.161333 ACCACGACGAGTAATTTAGAACG 58.839 43.478 0.00 0.00 0.00 3.95
2068 2460 3.545078 CCACGACGAGTAATTTAGAACGG 59.455 47.826 0.00 0.00 0.00 4.44
2069 2461 4.406069 CACGACGAGTAATTTAGAACGGA 58.594 43.478 0.00 0.00 0.00 4.69
2070 2462 4.494764 CACGACGAGTAATTTAGAACGGAG 59.505 45.833 0.00 0.00 0.00 4.63
2071 2463 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
2072 2464 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
2073 2465 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
2074 2466 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
2075 2467 4.097589 CGAGTAATTTAGAACGGAGGGAGT 59.902 45.833 0.00 0.00 0.00 3.85
2076 2468 5.297776 CGAGTAATTTAGAACGGAGGGAGTA 59.702 44.000 0.00 0.00 0.00 2.59
2088 2480 4.720273 ACGGAGGGAGTATAAATTGGTTCT 59.280 41.667 0.00 0.00 0.00 3.01
2089 2481 5.191124 ACGGAGGGAGTATAAATTGGTTCTT 59.809 40.000 0.00 0.00 0.00 2.52
2090 2482 5.758784 CGGAGGGAGTATAAATTGGTTCTTC 59.241 44.000 0.00 0.00 0.00 2.87
2091 2483 6.631766 CGGAGGGAGTATAAATTGGTTCTTCA 60.632 42.308 0.00 0.00 0.00 3.02
2092 2484 7.116736 GGAGGGAGTATAAATTGGTTCTTCAA 58.883 38.462 0.00 0.00 0.00 2.69
2093 2485 7.283354 GGAGGGAGTATAAATTGGTTCTTCAAG 59.717 40.741 0.00 0.00 0.00 3.02
2134 2526 6.248569 AGGTATGATTCGAAAGGGTAACAT 57.751 37.500 0.00 2.92 39.74 2.71
2170 2562 6.025280 GTCTTTGTAAGAAGTGCGAAAACAA 58.975 36.000 0.00 0.00 39.67 2.83
2181 2573 5.406649 AGTGCGAAAACAAAGTTTTGATCA 58.593 33.333 12.08 0.00 40.55 2.92
2188 2580 6.983474 AAACAAAGTTTTGATCAAACCCAG 57.017 33.333 20.35 11.70 45.42 4.45
2235 2627 2.760092 TGCTCAAATATGGTTTCCTGCC 59.240 45.455 0.00 0.00 0.00 4.85
2241 2633 1.202099 TATGGTTTCCTGCCGGGTCA 61.202 55.000 2.18 0.00 36.25 4.02
2279 2671 5.368230 GGAAGAGGAGGAGGATATTGTTTCT 59.632 44.000 0.00 0.00 0.00 2.52
2283 2675 5.032846 AGGAGGAGGATATTGTTTCTGACA 58.967 41.667 0.00 0.00 36.19 3.58
2348 2740 5.596845 GATGAAGAGCGAGAAGAAGGTAAT 58.403 41.667 0.00 0.00 0.00 1.89
2429 2821 0.912486 AGGAGTGGTCATTGGCTACC 59.088 55.000 0.68 0.00 36.24 3.18
2442 2834 0.462047 GGCTACCATGTTGGAGGACG 60.462 60.000 0.00 0.00 40.96 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.137437 ACTCAGTCCAACAGTGAAATTTTAATG 58.863 33.333 8.64 8.64 33.77 1.90
33 34 8.137437 CACTCAGTCCAACAGTGAAATTTTAAT 58.863 33.333 0.00 0.00 40.07 1.40
39 40 4.101585 TCTCACTCAGTCCAACAGTGAAAT 59.898 41.667 0.00 0.00 44.58 2.17
44 45 8.948401 ATATATATCTCACTCAGTCCAACAGT 57.052 34.615 0.00 0.00 0.00 3.55
96 97 9.618410 GTTGTCAAATGAGTTAAATTTGTTTCG 57.382 29.630 0.00 0.00 42.83 3.46
105 106 9.515020 GAAATCAGTGTTGTCAAATGAGTTAAA 57.485 29.630 8.49 0.00 33.34 1.52
108 109 6.974622 GTGAAATCAGTGTTGTCAAATGAGTT 59.025 34.615 8.34 8.34 34.73 3.01
109 110 6.319658 AGTGAAATCAGTGTTGTCAAATGAGT 59.680 34.615 0.00 0.00 0.00 3.41
110 111 6.732154 AGTGAAATCAGTGTTGTCAAATGAG 58.268 36.000 0.00 0.00 0.00 2.90
111 112 6.318396 TGAGTGAAATCAGTGTTGTCAAATGA 59.682 34.615 0.00 0.00 0.00 2.57
146 147 7.475299 TGAAATACTTTCTAAACTGGGGGAAT 58.525 34.615 1.74 0.00 40.32 3.01
147 148 6.854578 TGAAATACTTTCTAAACTGGGGGAA 58.145 36.000 1.74 0.00 40.32 3.97
149 150 7.718334 AATGAAATACTTTCTAAACTGGGGG 57.282 36.000 1.74 0.00 40.32 5.40
150 151 8.585018 ACAAATGAAATACTTTCTAAACTGGGG 58.415 33.333 1.74 0.00 40.32 4.96
160 161 9.914923 GGTGTTTGAAACAAATGAAATACTTTC 57.085 29.630 12.89 0.00 44.16 2.62
165 169 8.879342 AATCGGTGTTTGAAACAAATGAAATA 57.121 26.923 12.89 0.00 44.16 1.40
202 206 8.973835 TTGAGTTTAACGAAATCAGTGTTTTT 57.026 26.923 0.85 0.00 42.58 1.94
239 243 9.624697 TTTTGGAATGTCTGAAATCTTAAATCG 57.375 29.630 0.00 0.00 0.00 3.34
275 307 4.685169 ATCAGTTTTATTGGCGTGAGTG 57.315 40.909 0.00 0.00 0.00 3.51
332 364 8.690203 TTCTGAAATGAGTGGAATCAGTTTAA 57.310 30.769 0.00 0.00 37.60 1.52
333 365 8.690203 TTTCTGAAATGAGTGGAATCAGTTTA 57.310 30.769 0.00 0.00 37.60 2.01
400 432 8.877864 TCAGCTTTTGAGAGGGAAATAAAATA 57.122 30.769 0.00 0.00 0.00 1.40
401 433 7.781324 TCAGCTTTTGAGAGGGAAATAAAAT 57.219 32.000 0.00 0.00 0.00 1.82
411 448 6.453092 ACAAATGAAATCAGCTTTTGAGAGG 58.547 36.000 10.85 0.00 39.68 3.69
421 458 9.853921 CTACTTTTCAAAACAAATGAAATCAGC 57.146 29.630 2.88 0.00 43.94 4.26
647 706 8.133024 TCACCCAAACAAATCTGCTATTTTAT 57.867 30.769 0.00 0.00 0.00 1.40
660 719 3.068024 GCATGTTCTCTCACCCAAACAAA 59.932 43.478 0.00 0.00 35.46 2.83
670 729 3.055819 GGGTAGAGTTGCATGTTCTCTCA 60.056 47.826 15.66 0.00 39.03 3.27
671 730 3.526534 GGGTAGAGTTGCATGTTCTCTC 58.473 50.000 15.66 9.34 39.03 3.20
672 731 2.237392 GGGGTAGAGTTGCATGTTCTCT 59.763 50.000 16.18 16.18 40.85 3.10
673 732 2.633488 GGGGTAGAGTTGCATGTTCTC 58.367 52.381 0.00 0.38 0.00 2.87
674 733 1.066143 CGGGGTAGAGTTGCATGTTCT 60.066 52.381 0.00 0.00 0.00 3.01
675 734 1.369625 CGGGGTAGAGTTGCATGTTC 58.630 55.000 0.00 0.00 0.00 3.18
676 735 0.676782 GCGGGGTAGAGTTGCATGTT 60.677 55.000 0.00 0.00 0.00 2.71
677 736 1.078426 GCGGGGTAGAGTTGCATGT 60.078 57.895 0.00 0.00 0.00 3.21
678 737 0.676466 TTGCGGGGTAGAGTTGCATG 60.676 55.000 0.00 0.00 35.20 4.06
679 738 0.037590 TTTGCGGGGTAGAGTTGCAT 59.962 50.000 0.00 0.00 35.20 3.96
680 739 0.179015 TTTTGCGGGGTAGAGTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
681 740 0.955905 TTTTTGCGGGGTAGAGTTGC 59.044 50.000 0.00 0.00 0.00 4.17
702 761 5.591877 ACAGAGTTGCATGTTCTCTCTTTTT 59.408 36.000 11.45 0.00 36.57 1.94
703 762 5.128919 ACAGAGTTGCATGTTCTCTCTTTT 58.871 37.500 11.45 1.44 36.57 2.27
704 763 4.712476 ACAGAGTTGCATGTTCTCTCTTT 58.288 39.130 11.45 3.94 36.57 2.52
705 764 4.348863 ACAGAGTTGCATGTTCTCTCTT 57.651 40.909 11.45 2.89 36.57 2.85
765 828 7.715249 TGCAAACACTCCATATATCTCTTTACC 59.285 37.037 0.00 0.00 0.00 2.85
787 853 9.938280 ACTCTACTATTTTACTGTATTGTGCAA 57.062 29.630 0.00 0.00 0.00 4.08
810 1138 1.202698 GGTCCCATGATGCCAGTACTC 60.203 57.143 0.00 0.00 0.00 2.59
883 1219 4.222145 ACATTTCTACCTGTGACGGTATGT 59.778 41.667 6.75 6.78 38.76 2.29
889 1225 1.732259 GCCACATTTCTACCTGTGACG 59.268 52.381 4.34 0.00 44.35 4.35
907 1243 4.570772 TGCAGATCGACTTTTAATAGTGCC 59.429 41.667 3.08 0.00 0.00 5.01
938 1275 0.607489 TGAAGCTGCTTCTCTTGGCC 60.607 55.000 34.44 13.74 40.73 5.36
939 1276 0.803740 CTGAAGCTGCTTCTCTTGGC 59.196 55.000 34.44 14.40 40.73 4.52
940 1277 0.803740 GCTGAAGCTGCTTCTCTTGG 59.196 55.000 34.44 21.94 40.73 3.61
941 1278 1.520494 TGCTGAAGCTGCTTCTCTTG 58.480 50.000 34.44 23.92 40.73 3.02
942 1279 2.488545 CAATGCTGAAGCTGCTTCTCTT 59.511 45.455 34.44 22.95 40.73 2.85
1018 1361 0.673437 GGTGCTCTAGGCTCTAGCTG 59.327 60.000 18.44 0.00 42.39 4.24
1019 1362 0.260230 TGGTGCTCTAGGCTCTAGCT 59.740 55.000 18.44 0.00 42.39 3.32
1020 1363 1.000731 CATGGTGCTCTAGGCTCTAGC 59.999 57.143 12.71 12.71 42.39 3.42
1021 1364 1.617850 CCATGGTGCTCTAGGCTCTAG 59.382 57.143 2.57 3.55 42.39 2.43
1022 1365 1.062886 ACCATGGTGCTCTAGGCTCTA 60.063 52.381 18.99 0.62 42.39 2.43
1023 1366 0.326048 ACCATGGTGCTCTAGGCTCT 60.326 55.000 18.99 0.00 42.39 4.09
1024 1367 0.179062 CACCATGGTGCTCTAGGCTC 60.179 60.000 31.13 1.81 42.39 4.70
1025 1368 1.630126 CCACCATGGTGCTCTAGGCT 61.630 60.000 35.34 0.00 44.16 4.58
1026 1369 1.153086 CCACCATGGTGCTCTAGGC 60.153 63.158 35.34 0.00 44.16 3.93
1027 1370 1.153086 GCCACCATGGTGCTCTAGG 60.153 63.158 35.34 23.26 44.16 3.02
1028 1371 0.463295 CAGCCACCATGGTGCTCTAG 60.463 60.000 35.34 23.31 44.16 2.43
1046 1413 4.286808 TCAGGATGAGGATCTTGTGTTTCA 59.713 41.667 0.00 0.00 42.56 2.69
1158 1525 1.463444 CTGTTTGTACTGTTAGCCGCC 59.537 52.381 0.00 0.00 0.00 6.13
1164 1531 3.818210 CCATGGTGCTGTTTGTACTGTTA 59.182 43.478 2.57 0.00 0.00 2.41
1168 1535 2.504367 GTCCATGGTGCTGTTTGTACT 58.496 47.619 12.58 0.00 0.00 2.73
1192 1559 0.034896 TTGAAGGACAGCCCGTTCTC 59.965 55.000 0.00 0.00 40.87 2.87
1195 1562 0.182775 AAGTTGAAGGACAGCCCGTT 59.817 50.000 0.00 0.00 40.87 4.44
1638 2022 4.796946 GCACAACAAATCTGCAGATCCAAA 60.797 41.667 28.83 0.59 32.75 3.28
1667 2051 8.649591 TCATACCAACTGTTAACTGTAAACCTA 58.350 33.333 17.25 5.19 0.00 3.08
1669 2053 7.733402 TCATACCAACTGTTAACTGTAAACC 57.267 36.000 17.25 0.00 0.00 3.27
1677 2061 7.065803 AGCACATACATCATACCAACTGTTAAC 59.934 37.037 0.00 0.00 0.00 2.01
1977 2368 5.855045 AGTAGTTTGTCCAGAGAATCGTTT 58.145 37.500 0.00 0.00 42.67 3.60
1999 2391 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2000 2392 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2001 2393 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2002 2394 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2003 2395 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2004 2396 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2005 2397 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2006 2398 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2007 2399 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2008 2400 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2009 2401 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2010 2402 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2011 2403 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2012 2404 6.346040 CGAACTAAAACCACGACGAGTAATTT 60.346 38.462 0.00 0.34 0.00 1.82
2013 2405 5.117592 CGAACTAAAACCACGACGAGTAATT 59.882 40.000 0.00 1.08 0.00 1.40
2014 2406 4.618489 CGAACTAAAACCACGACGAGTAAT 59.382 41.667 0.00 0.00 0.00 1.89
2015 2407 3.974401 CGAACTAAAACCACGACGAGTAA 59.026 43.478 0.00 0.00 0.00 2.24
2016 2408 3.249799 TCGAACTAAAACCACGACGAGTA 59.750 43.478 0.00 0.00 0.00 2.59
2017 2409 2.033299 TCGAACTAAAACCACGACGAGT 59.967 45.455 0.00 0.00 0.00 4.18
2018 2410 2.653890 TCGAACTAAAACCACGACGAG 58.346 47.619 0.00 0.00 0.00 4.18
2019 2411 2.772568 TCGAACTAAAACCACGACGA 57.227 45.000 0.00 0.00 0.00 4.20
2020 2412 2.791004 AGTTCGAACTAAAACCACGACG 59.209 45.455 28.80 0.00 37.52 5.12
2021 2413 5.888412 TTAGTTCGAACTAAAACCACGAC 57.112 39.130 36.54 7.53 45.62 4.34
2030 2422 4.440758 CGTCGTGGTTTTAGTTCGAACTAA 59.559 41.667 35.56 35.56 46.58 2.24
2031 2423 3.974401 CGTCGTGGTTTTAGTTCGAACTA 59.026 43.478 29.57 29.57 40.37 2.24
2032 2424 2.791004 CGTCGTGGTTTTAGTTCGAACT 59.209 45.455 31.70 31.70 42.91 3.01
2033 2425 2.788786 TCGTCGTGGTTTTAGTTCGAAC 59.211 45.455 20.71 20.71 32.56 3.95
2034 2426 3.044986 CTCGTCGTGGTTTTAGTTCGAA 58.955 45.455 0.00 0.00 32.56 3.71
2035 2427 2.033299 ACTCGTCGTGGTTTTAGTTCGA 59.967 45.455 0.00 0.00 0.00 3.71
2036 2428 2.388121 ACTCGTCGTGGTTTTAGTTCG 58.612 47.619 0.00 0.00 0.00 3.95
2037 2429 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2038 2430 6.849588 AAATTACTCGTCGTGGTTTTAGTT 57.150 33.333 0.00 0.00 0.00 2.24
2039 2431 7.370383 TCTAAATTACTCGTCGTGGTTTTAGT 58.630 34.615 16.53 6.04 31.59 2.24
2040 2432 7.801547 TCTAAATTACTCGTCGTGGTTTTAG 57.198 36.000 13.72 13.72 31.25 1.85
2041 2433 7.148983 CGTTCTAAATTACTCGTCGTGGTTTTA 60.149 37.037 0.00 0.48 0.00 1.52
2042 2434 6.346040 CGTTCTAAATTACTCGTCGTGGTTTT 60.346 38.462 0.00 0.00 0.00 2.43
2043 2435 5.117592 CGTTCTAAATTACTCGTCGTGGTTT 59.882 40.000 0.00 0.79 0.00 3.27
2044 2436 4.618489 CGTTCTAAATTACTCGTCGTGGTT 59.382 41.667 0.00 0.00 0.00 3.67
2045 2437 4.161333 CGTTCTAAATTACTCGTCGTGGT 58.839 43.478 0.00 0.00 0.00 4.16
2046 2438 3.545078 CCGTTCTAAATTACTCGTCGTGG 59.455 47.826 0.00 0.00 0.00 4.94
2047 2439 4.406069 TCCGTTCTAAATTACTCGTCGTG 58.594 43.478 0.00 0.00 0.00 4.35
2048 2440 4.437930 CCTCCGTTCTAAATTACTCGTCGT 60.438 45.833 0.00 0.00 0.00 4.34
2049 2441 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
2050 2442 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
2051 2443 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
2052 2444 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
2053 2445 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
2054 2446 8.773033 TTATACTCCCTCCGTTCTAAATTACT 57.227 34.615 0.00 0.00 0.00 2.24
2055 2447 9.993454 ATTTATACTCCCTCCGTTCTAAATTAC 57.007 33.333 0.00 0.00 0.00 1.89
2057 2449 9.338622 CAATTTATACTCCCTCCGTTCTAAATT 57.661 33.333 0.00 0.00 31.30 1.82
2058 2450 7.937394 CCAATTTATACTCCCTCCGTTCTAAAT 59.063 37.037 0.00 0.00 0.00 1.40
2059 2451 7.092757 ACCAATTTATACTCCCTCCGTTCTAAA 60.093 37.037 0.00 0.00 0.00 1.85
2060 2452 6.384886 ACCAATTTATACTCCCTCCGTTCTAA 59.615 38.462 0.00 0.00 0.00 2.10
2061 2453 5.901276 ACCAATTTATACTCCCTCCGTTCTA 59.099 40.000 0.00 0.00 0.00 2.10
2062 2454 4.720273 ACCAATTTATACTCCCTCCGTTCT 59.280 41.667 0.00 0.00 0.00 3.01
2063 2455 5.032327 ACCAATTTATACTCCCTCCGTTC 57.968 43.478 0.00 0.00 0.00 3.95
2064 2456 5.191124 AGAACCAATTTATACTCCCTCCGTT 59.809 40.000 0.00 0.00 0.00 4.44
2065 2457 4.720273 AGAACCAATTTATACTCCCTCCGT 59.280 41.667 0.00 0.00 0.00 4.69
2066 2458 5.291905 AGAACCAATTTATACTCCCTCCG 57.708 43.478 0.00 0.00 0.00 4.63
2067 2459 6.659824 TGAAGAACCAATTTATACTCCCTCC 58.340 40.000 0.00 0.00 0.00 4.30
2068 2460 7.829706 ACTTGAAGAACCAATTTATACTCCCTC 59.170 37.037 0.00 0.00 0.00 4.30
2069 2461 7.699878 ACTTGAAGAACCAATTTATACTCCCT 58.300 34.615 0.00 0.00 0.00 4.20
2070 2462 7.939784 ACTTGAAGAACCAATTTATACTCCC 57.060 36.000 0.00 0.00 0.00 4.30
2071 2463 9.010029 TGAACTTGAAGAACCAATTTATACTCC 57.990 33.333 0.00 0.00 0.00 3.85
2074 2466 9.626045 CCTTGAACTTGAAGAACCAATTTATAC 57.374 33.333 0.00 0.00 0.00 1.47
2075 2467 9.362151 ACCTTGAACTTGAAGAACCAATTTATA 57.638 29.630 0.00 0.00 0.00 0.98
2076 2468 8.143835 CACCTTGAACTTGAAGAACCAATTTAT 58.856 33.333 0.00 0.00 0.00 1.40
2088 2480 2.575532 CTCTGCCACCTTGAACTTGAA 58.424 47.619 0.00 0.00 0.00 2.69
2089 2481 1.202806 CCTCTGCCACCTTGAACTTGA 60.203 52.381 0.00 0.00 0.00 3.02
2090 2482 1.202806 TCCTCTGCCACCTTGAACTTG 60.203 52.381 0.00 0.00 0.00 3.16
2091 2483 1.140312 TCCTCTGCCACCTTGAACTT 58.860 50.000 0.00 0.00 0.00 2.66
2092 2484 1.072965 CTTCCTCTGCCACCTTGAACT 59.927 52.381 0.00 0.00 0.00 3.01
2093 2485 1.528129 CTTCCTCTGCCACCTTGAAC 58.472 55.000 0.00 0.00 0.00 3.18
2170 2562 7.264947 CAGTAAACTGGGTTTGATCAAAACTT 58.735 34.615 30.02 20.45 41.19 2.66
2188 2580 1.508632 TCTTCACAGCGCCAGTAAAC 58.491 50.000 2.29 0.00 0.00 2.01
2235 2627 2.358737 GTGCCTTGTCCTGACCCG 60.359 66.667 0.00 0.00 0.00 5.28
2241 2633 0.832135 TCTTCCTCGTGCCTTGTCCT 60.832 55.000 0.00 0.00 0.00 3.85
2279 2671 1.134367 GTCGTCCCTTCATCGATGTCA 59.866 52.381 24.09 11.86 36.08 3.58
2283 2675 1.763968 TCTGTCGTCCCTTCATCGAT 58.236 50.000 0.00 0.00 36.08 3.59
2429 2821 4.208632 GAGGCGTCCTCCAACATG 57.791 61.111 13.12 0.00 44.36 3.21
2442 2834 7.872483 TCATCCTTTTCAGTTTTAAAATGAGGC 59.128 33.333 7.85 0.00 28.76 4.70
2474 2866 5.930135 AGCCTCTCTAAAAACAACTCTTCA 58.070 37.500 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.