Multiple sequence alignment - TraesCS5D01G566400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G566400 chr5D 100.000 4397 0 0 2339 6735 564750911 564746515 0.000000e+00 8120.0
1 TraesCS5D01G566400 chr5D 100.000 1883 0 0 1 1883 564753249 564751367 0.000000e+00 3478.0
2 TraesCS5D01G566400 chr5D 91.879 1687 95 17 5088 6735 557355305 557353622 0.000000e+00 2318.0
3 TraesCS5D01G566400 chr5D 91.879 1687 95 17 5088 6735 557375743 557374060 0.000000e+00 2318.0
4 TraesCS5D01G566400 chr5D 91.879 1687 95 17 5088 6735 564727652 564725969 0.000000e+00 2318.0
5 TraesCS5D01G566400 chr5D 92.349 1490 90 14 5088 6554 557324455 557322967 0.000000e+00 2098.0
6 TraesCS5D01G566400 chr5D 89.888 1345 107 13 4592 5914 557284088 557282751 0.000000e+00 1703.0
7 TraesCS5D01G566400 chr5D 78.152 1158 123 57 791 1883 564788155 564789247 9.600000e-173 617.0
8 TraesCS5D01G566400 chr5D 82.692 728 89 23 4120 4832 564788379 564789084 4.460000e-171 612.0
9 TraesCS5D01G566400 chr5D 75.549 1321 236 52 4277 5577 483810134 483811387 2.730000e-158 569.0
10 TraesCS5D01G566400 chr5D 78.190 917 121 37 1030 1883 564749126 564748226 4.660000e-141 512.0
11 TraesCS5D01G566400 chr5D 78.190 917 121 37 4124 5024 564752220 564751367 4.660000e-141 512.0
12 TraesCS5D01G566400 chr5D 79.487 507 77 17 2373 2863 564758530 564758035 1.080000e-87 335.0
13 TraesCS5D01G566400 chr5D 94.836 213 9 1 6523 6735 557322968 557322758 1.400000e-86 331.0
14 TraesCS5D01G566400 chr5D 75.570 745 132 20 1178 1883 483810134 483810867 8.430000e-84 322.0
15 TraesCS5D01G566400 chr5D 93.836 146 9 0 6590 6735 557282234 557282089 3.160000e-53 220.0
16 TraesCS5D01G566400 chr5D 90.062 161 16 0 4241 4401 528279922 528279762 6.840000e-50 209.0
17 TraesCS5D01G566400 chr5D 78.656 253 38 7 540 776 564778316 564778568 3.250000e-33 154.0
18 TraesCS5D01G566400 chrUn 92.779 1371 78 11 5205 6554 404506401 404505031 0.000000e+00 1964.0
19 TraesCS5D01G566400 chrUn 90.216 971 74 11 5103 6052 376646545 376645575 0.000000e+00 1247.0
20 TraesCS5D01G566400 chr5B 88.928 1147 81 16 5164 6295 708408667 708407552 0.000000e+00 1373.0
21 TraesCS5D01G566400 chr5B 86.537 1233 106 19 2668 3849 708657461 708656238 0.000000e+00 1303.0
22 TraesCS5D01G566400 chr5B 86.698 857 65 22 492 1326 708658343 708657514 0.000000e+00 905.0
23 TraesCS5D01G566400 chr5B 87.195 656 73 8 4124 4770 708409336 708408683 0.000000e+00 736.0
24 TraesCS5D01G566400 chr5B 83.862 378 54 5 2389 2759 709245255 709245632 2.990000e-93 353.0
25 TraesCS5D01G566400 chr5B 75.294 765 141 33 4273 5026 595018391 595019118 8.430000e-84 322.0
26 TraesCS5D01G566400 chr5B 88.889 216 21 2 138 352 708658734 708658521 5.180000e-66 263.0
27 TraesCS5D01G566400 chr5B 83.784 296 26 10 4127 4414 708657806 708657525 1.860000e-65 261.0
28 TraesCS5D01G566400 chr5B 75.965 570 94 25 2432 2977 708453287 708452737 3.120000e-63 254.0
29 TraesCS5D01G566400 chr5B 76.483 472 85 17 5127 5581 709245276 709245738 4.060000e-57 233.0
30 TraesCS5D01G566400 chr5B 94.521 146 8 0 6590 6735 709246703 709246848 6.800000e-55 226.0
31 TraesCS5D01G566400 chr5B 94.400 125 6 1 1 125 708659474 708659351 2.480000e-44 191.0
32 TraesCS5D01G566400 chr5B 95.918 49 2 0 432 480 708658385 708658337 5.600000e-11 80.5
33 TraesCS5D01G566400 chr4A 85.559 921 85 28 2948 3849 605767869 605766978 0.000000e+00 920.0
34 TraesCS5D01G566400 chr4A 86.470 643 63 17 3200 3827 605867701 605867068 0.000000e+00 684.0
35 TraesCS5D01G566400 chr4A 88.654 520 44 7 3343 3849 606006116 606005599 2.670000e-173 619.0
36 TraesCS5D01G566400 chr4A 88.654 520 44 7 3343 3849 606106794 606106277 2.670000e-173 619.0
37 TraesCS5D01G566400 chr4A 88.654 520 44 7 3343 3849 606251035 606250518 2.670000e-173 619.0
38 TraesCS5D01G566400 chr4A 88.654 520 44 7 3343 3849 606252755 606252238 2.670000e-173 619.0
39 TraesCS5D01G566400 chr4A 88.654 520 44 7 3343 3849 606323596 606323079 2.670000e-173 619.0
40 TraesCS5D01G566400 chr4A 88.145 523 47 7 3340 3849 606187708 606187188 5.780000e-170 608.0
41 TraesCS5D01G566400 chr4A 84.139 662 54 22 3940 4596 605765679 605765064 1.620000e-165 593.0
42 TraesCS5D01G566400 chr4A 81.349 697 85 23 2352 3028 606339858 606340529 5.980000e-145 525.0
43 TraesCS5D01G566400 chr4A 80.505 554 85 19 5127 5671 606339910 606340449 2.930000e-108 403.0
44 TraesCS5D01G566400 chr4A 87.372 293 28 6 4106 4395 606339426 606339712 1.810000e-85 327.0
45 TraesCS5D01G566400 chr4A 81.654 387 52 7 2392 2759 605750776 605750390 3.050000e-78 303.0
46 TraesCS5D01G566400 chr4A 83.281 317 28 8 992 1296 606339409 606339712 1.110000e-67 268.0
47 TraesCS5D01G566400 chr4A 79.607 407 48 23 1085 1472 605765452 605765062 6.700000e-65 259.0
48 TraesCS5D01G566400 chr4A 95.890 146 6 0 6590 6735 605749303 605749158 3.140000e-58 237.0
49 TraesCS5D01G566400 chr4A 87.879 198 19 4 6540 6735 605766637 605766443 1.890000e-55 228.0
50 TraesCS5D01G566400 chr4A 74.750 400 61 19 1496 1872 605751243 605750861 7.040000e-30 143.0
51 TraesCS5D01G566400 chr4A 88.679 106 11 1 1770 1874 606339727 606339832 1.970000e-25 128.0
52 TraesCS5D01G566400 chr4A 83.212 137 20 3 4776 4912 612532409 612532542 9.170000e-24 122.0
53 TraesCS5D01G566400 chr4A 88.889 72 8 0 4594 4665 605751271 605751200 9.300000e-14 89.8
54 TraesCS5D01G566400 chr5A 75.441 1759 305 68 4076 5793 656216738 656215066 0.000000e+00 737.0
55 TraesCS5D01G566400 chr5A 76.107 1310 224 53 4277 5565 605249108 605250349 2.690000e-168 603.0
56 TraesCS5D01G566400 chr5A 78.367 943 141 42 5803 6727 656214988 656214091 2.740000e-153 553.0
57 TraesCS5D01G566400 chr5A 75.908 743 131 26 1178 1882 605249108 605249840 3.010000e-88 337.0
58 TraesCS5D01G566400 chr5A 75.444 676 120 26 4625 5296 605350353 605350986 3.070000e-73 287.0
59 TraesCS5D01G566400 chr5A 74.255 470 100 14 4444 4905 605349821 605350277 1.930000e-40 178.0
60 TraesCS5D01G566400 chr3A 81.178 696 87 26 2352 3028 744098081 744097411 2.780000e-143 520.0
61 TraesCS5D01G566400 chr3A 84.615 455 57 6 1430 1874 744098558 744098107 2.230000e-119 440.0
62 TraesCS5D01G566400 chr3A 80.108 553 88 18 5127 5671 744098029 744097491 6.330000e-105 392.0
63 TraesCS5D01G566400 chr3A 78.769 471 67 19 4556 5014 744098558 744098109 1.110000e-72 285.0
64 TraesCS5D01G566400 chr3A 87.075 147 17 2 1178 1323 742784870 742785015 1.500000e-36 165.0
65 TraesCS5D01G566400 chr3A 90.000 80 8 0 2767 2846 742786047 742786126 3.320000e-18 104.0
66 TraesCS5D01G566400 chr7A 73.952 668 130 24 4273 4912 91496645 91497296 5.250000e-56 230.0
67 TraesCS5D01G566400 chr3D 87.582 153 17 2 1178 1329 609232362 609232513 6.940000e-40 176.0
68 TraesCS5D01G566400 chr3D 91.250 80 7 0 2767 2846 609233539 609233618 7.140000e-20 110.0
69 TraesCS5D01G566400 chr2A 83.453 139 17 6 1174 1309 62488663 62488798 2.550000e-24 124.0
70 TraesCS5D01G566400 chr6B 91.667 48 1 2 3856 3902 661925969 661926014 5.640000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G566400 chr5D 564746515 564753249 6734 True 3155.500000 8120 89.095000 1 6735 4 chr5D.!!$R8 6734
1 TraesCS5D01G566400 chr5D 557353622 557355305 1683 True 2318.000000 2318 91.879000 5088 6735 1 chr5D.!!$R2 1647
2 TraesCS5D01G566400 chr5D 557374060 557375743 1683 True 2318.000000 2318 91.879000 5088 6735 1 chr5D.!!$R3 1647
3 TraesCS5D01G566400 chr5D 564725969 564727652 1683 True 2318.000000 2318 91.879000 5088 6735 1 chr5D.!!$R4 1647
4 TraesCS5D01G566400 chr5D 557322758 557324455 1697 True 1214.500000 2098 93.592500 5088 6735 2 chr5D.!!$R7 1647
5 TraesCS5D01G566400 chr5D 557282089 557284088 1999 True 961.500000 1703 91.862000 4592 6735 2 chr5D.!!$R6 2143
6 TraesCS5D01G566400 chr5D 564788155 564789247 1092 False 614.500000 617 80.422000 791 4832 2 chr5D.!!$F3 4041
7 TraesCS5D01G566400 chr5D 483810134 483811387 1253 False 445.500000 569 75.559500 1178 5577 2 chr5D.!!$F2 4399
8 TraesCS5D01G566400 chrUn 404505031 404506401 1370 True 1964.000000 1964 92.779000 5205 6554 1 chrUn.!!$R2 1349
9 TraesCS5D01G566400 chrUn 376645575 376646545 970 True 1247.000000 1247 90.216000 5103 6052 1 chrUn.!!$R1 949
10 TraesCS5D01G566400 chr5B 708407552 708409336 1784 True 1054.500000 1373 88.061500 4124 6295 2 chr5B.!!$R2 2171
11 TraesCS5D01G566400 chr5B 708656238 708659474 3236 True 500.583333 1303 89.371000 1 4414 6 chr5B.!!$R3 4413
12 TraesCS5D01G566400 chr5B 595018391 595019118 727 False 322.000000 322 75.294000 4273 5026 1 chr5B.!!$F1 753
13 TraesCS5D01G566400 chr5B 709245255 709246848 1593 False 270.666667 353 84.955333 2389 6735 3 chr5B.!!$F2 4346
14 TraesCS5D01G566400 chr5B 708452737 708453287 550 True 254.000000 254 75.965000 2432 2977 1 chr5B.!!$R1 545
15 TraesCS5D01G566400 chr4A 605867068 605867701 633 True 684.000000 684 86.470000 3200 3827 1 chr4A.!!$R1 627
16 TraesCS5D01G566400 chr4A 606005599 606006116 517 True 619.000000 619 88.654000 3343 3849 1 chr4A.!!$R2 506
17 TraesCS5D01G566400 chr4A 606106277 606106794 517 True 619.000000 619 88.654000 3343 3849 1 chr4A.!!$R3 506
18 TraesCS5D01G566400 chr4A 606250518 606252755 2237 True 619.000000 619 88.654000 3343 3849 2 chr4A.!!$R8 506
19 TraesCS5D01G566400 chr4A 606323079 606323596 517 True 619.000000 619 88.654000 3343 3849 1 chr4A.!!$R5 506
20 TraesCS5D01G566400 chr4A 606187188 606187708 520 True 608.000000 608 88.145000 3340 3849 1 chr4A.!!$R4 509
21 TraesCS5D01G566400 chr4A 605765062 605767869 2807 True 500.000000 920 84.296000 1085 6735 4 chr4A.!!$R7 5650
22 TraesCS5D01G566400 chr4A 606339409 606340529 1120 False 330.200000 525 84.237200 992 5671 5 chr4A.!!$F2 4679
23 TraesCS5D01G566400 chr5A 656214091 656216738 2647 True 645.000000 737 76.904000 4076 6727 2 chr5A.!!$R1 2651
24 TraesCS5D01G566400 chr5A 605249108 605250349 1241 False 470.000000 603 76.007500 1178 5565 2 chr5A.!!$F1 4387
25 TraesCS5D01G566400 chr5A 605349821 605350986 1165 False 232.500000 287 74.849500 4444 5296 2 chr5A.!!$F2 852
26 TraesCS5D01G566400 chr3A 744097411 744098558 1147 True 409.250000 520 81.167500 1430 5671 4 chr3A.!!$R1 4241
27 TraesCS5D01G566400 chr7A 91496645 91497296 651 False 230.000000 230 73.952000 4273 4912 1 chr7A.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 824 0.032416 TACTCACCTAGCCCACCTCC 60.032 60.0 0.00 0.00 0.00 4.30 F
274 879 0.035317 GTGATCCGCATATGCAGGGA 59.965 55.0 26.52 24.01 42.21 4.20 F
1636 2421 0.102300 CGTCCATGGCGAGTACATCA 59.898 55.0 19.72 0.00 0.00 3.07 F
2561 3359 0.107945 CTAACCTGCAGAGGCTCACC 60.108 60.0 17.39 7.37 44.33 4.02 F
4099 6770 0.109226 CGTCGGTCTTTCTCCTCACC 60.109 60.0 0.00 0.00 0.00 4.02 F
4208 6884 0.035317 AGAACAGCCGACATGCTTGA 59.965 50.0 6.60 0.00 40.32 3.02 F
4325 7007 0.249447 CTCCACGCCATTCTATCGCA 60.249 55.0 0.00 0.00 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 2580 0.174389 CTGGTCATCACGTCCTCCTG 59.826 60.000 0.00 0.0 0.00 3.86 R
1849 2644 0.452122 CGTGACCGCAAAATTCGACC 60.452 55.000 0.00 0.0 0.00 4.79 R
2652 3457 0.040958 CAAGACCTGTTGAACAGCGC 60.041 55.000 19.45 12.7 44.63 5.92 R
4195 6871 0.099436 GTGGATTCAAGCATGTCGGC 59.901 55.000 0.00 0.0 0.00 5.54 R
5257 8333 0.615331 TGAGCTTCTGCAGGTTAGGG 59.385 55.000 15.13 0.0 42.74 3.53 R
5602 8698 1.349688 TCGGCCATAGTGAGTTTGGTT 59.650 47.619 2.24 0.0 32.90 3.67 R
5747 8860 2.426522 ACAATGTCAACCATCCGACAG 58.573 47.619 0.00 0.0 44.83 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.025416 TCCGGATTGATGTGTGGGATTT 60.025 45.455 0.00 0.00 0.00 2.17
33 34 3.193267 CGGATTGATGTGTGGGATTTTGT 59.807 43.478 0.00 0.00 0.00 2.83
106 107 2.874457 GCGGTGGTTGGTGTCTAGAAAT 60.874 50.000 0.00 0.00 0.00 2.17
107 108 3.408634 CGGTGGTTGGTGTCTAGAAATT 58.591 45.455 0.00 0.00 0.00 1.82
142 143 6.957631 TCTATCCTTTAAGAGCAATCCAACA 58.042 36.000 0.00 0.00 0.00 3.33
144 145 4.724399 TCCTTTAAGAGCAATCCAACACA 58.276 39.130 0.00 0.00 0.00 3.72
145 146 4.761739 TCCTTTAAGAGCAATCCAACACAG 59.238 41.667 0.00 0.00 0.00 3.66
146 147 4.082571 CCTTTAAGAGCAATCCAACACAGG 60.083 45.833 0.00 0.00 0.00 4.00
147 148 2.664402 AAGAGCAATCCAACACAGGT 57.336 45.000 0.00 0.00 0.00 4.00
148 149 2.191128 AGAGCAATCCAACACAGGTC 57.809 50.000 0.00 0.00 0.00 3.85
149 150 1.168714 GAGCAATCCAACACAGGTCC 58.831 55.000 0.00 0.00 0.00 4.46
150 151 0.251341 AGCAATCCAACACAGGTCCC 60.251 55.000 0.00 0.00 0.00 4.46
172 777 3.323243 CGTCCTCGTTACATCCTTTTGT 58.677 45.455 0.00 0.00 0.00 2.83
173 778 3.122948 CGTCCTCGTTACATCCTTTTGTG 59.877 47.826 0.00 0.00 0.00 3.33
189 794 5.006165 CCTTTTGTGAGTTTTGCGCATAAAA 59.994 36.000 12.75 7.12 42.21 1.52
190 795 5.382573 TTTGTGAGTTTTGCGCATAAAAC 57.617 34.783 23.74 23.74 46.02 2.43
219 824 0.032416 TACTCACCTAGCCCACCTCC 60.032 60.000 0.00 0.00 0.00 4.30
223 828 2.041265 CCTAGCCCACCTCCCTGT 59.959 66.667 0.00 0.00 0.00 4.00
226 831 0.909610 CTAGCCCACCTCCCTGTTCA 60.910 60.000 0.00 0.00 0.00 3.18
242 847 0.459585 TTCAACGGACCTCTATGCGC 60.460 55.000 0.00 0.00 36.83 6.09
251 856 1.224592 CTCTATGCGCCCCCACTTT 59.775 57.895 4.18 0.00 0.00 2.66
262 867 1.453155 CCCCACTTTTCTGTGATCCG 58.547 55.000 0.00 0.00 40.12 4.18
264 869 1.522668 CCACTTTTCTGTGATCCGCA 58.477 50.000 0.00 0.00 40.12 5.69
268 873 4.260907 CCACTTTTCTGTGATCCGCATATG 60.261 45.833 0.00 0.00 40.12 1.78
271 876 2.159327 TCTGTGATCCGCATATGCAG 57.841 50.000 26.52 16.39 42.21 4.41
274 879 0.035317 GTGATCCGCATATGCAGGGA 59.965 55.000 26.52 24.01 42.21 4.20
304 910 0.106669 GCTCCCATCCCTACCCAAAC 60.107 60.000 0.00 0.00 0.00 2.93
309 915 0.258774 CATCCCTACCCAAACCCCAG 59.741 60.000 0.00 0.00 0.00 4.45
324 930 2.063979 CCAGTGATACTCCCCGCCA 61.064 63.158 0.00 0.00 0.00 5.69
326 932 2.106332 GTGATACTCCCCGCCACG 59.894 66.667 0.00 0.00 0.00 4.94
330 936 1.381599 ATACTCCCCGCCACGGTTA 60.382 57.895 5.17 0.00 46.80 2.85
339 945 1.717348 GCCACGGTTAACCATACGC 59.283 57.895 24.14 14.88 35.14 4.42
352 958 4.481368 ACCATACGCTTTTGACCATCTA 57.519 40.909 0.00 0.00 0.00 1.98
353 959 5.036117 ACCATACGCTTTTGACCATCTAT 57.964 39.130 0.00 0.00 0.00 1.98
354 960 5.057149 ACCATACGCTTTTGACCATCTATC 58.943 41.667 0.00 0.00 0.00 2.08
355 961 5.056480 CCATACGCTTTTGACCATCTATCA 58.944 41.667 0.00 0.00 0.00 2.15
358 964 3.270027 CGCTTTTGACCATCTATCACCA 58.730 45.455 0.00 0.00 0.00 4.17
361 967 5.163622 CGCTTTTGACCATCTATCACCATTT 60.164 40.000 0.00 0.00 0.00 2.32
364 970 6.513806 TTTGACCATCTATCACCATTTGTG 57.486 37.500 0.00 0.00 46.88 3.33
365 971 4.525996 TGACCATCTATCACCATTTGTGG 58.474 43.478 0.00 0.00 45.48 4.17
366 972 3.290710 ACCATCTATCACCATTTGTGGC 58.709 45.455 0.00 0.00 45.48 5.01
367 973 2.624838 CCATCTATCACCATTTGTGGCC 59.375 50.000 0.00 0.00 45.48 5.36
368 974 2.435372 TCTATCACCATTTGTGGCCC 57.565 50.000 0.00 0.00 45.48 5.80
369 975 1.064017 TCTATCACCATTTGTGGCCCC 60.064 52.381 0.00 0.00 45.48 5.80
370 976 1.006813 TATCACCATTTGTGGCCCCT 58.993 50.000 0.00 0.00 45.48 4.79
371 977 0.116940 ATCACCATTTGTGGCCCCTT 59.883 50.000 0.00 0.00 45.48 3.95
372 978 0.831288 TCACCATTTGTGGCCCCTTG 60.831 55.000 0.00 0.00 45.48 3.61
373 979 0.831288 CACCATTTGTGGCCCCTTGA 60.831 55.000 0.00 0.00 41.52 3.02
377 983 1.693606 CATTTGTGGCCCCTTGAGTTT 59.306 47.619 0.00 0.00 0.00 2.66
406 1012 8.117813 TGTTGATGGGGAAAATAAGAAACTAC 57.882 34.615 0.00 0.00 0.00 2.73
407 1013 7.177744 TGTTGATGGGGAAAATAAGAAACTACC 59.822 37.037 0.00 0.00 0.00 3.18
411 1066 5.202746 GGGAAAATAAGAAACTACCCCCT 57.797 43.478 0.00 0.00 0.00 4.79
412 1067 5.198965 GGGAAAATAAGAAACTACCCCCTC 58.801 45.833 0.00 0.00 0.00 4.30
419 1074 2.105993 AGAAACTACCCCCTCACACAAC 59.894 50.000 0.00 0.00 0.00 3.32
428 1083 0.738389 CCTCACACAACACCCACAAC 59.262 55.000 0.00 0.00 0.00 3.32
429 1084 1.681780 CCTCACACAACACCCACAACT 60.682 52.381 0.00 0.00 0.00 3.16
431 1086 1.815613 TCACACAACACCCACAACTTG 59.184 47.619 0.00 0.00 0.00 3.16
432 1087 1.815613 CACACAACACCCACAACTTGA 59.184 47.619 0.00 0.00 0.00 3.02
434 1089 2.687935 ACACAACACCCACAACTTGATC 59.312 45.455 0.00 0.00 0.00 2.92
435 1090 2.951642 CACAACACCCACAACTTGATCT 59.048 45.455 0.00 0.00 0.00 2.75
436 1091 2.951642 ACAACACCCACAACTTGATCTG 59.048 45.455 0.00 0.00 0.00 2.90
447 1115 6.833416 CCACAACTTGATCTGGGGAAAATATA 59.167 38.462 0.00 0.00 38.51 0.86
478 1146 4.866682 GCTCCATGCAGAAAGTAACTAC 57.133 45.455 0.00 0.00 42.31 2.73
479 1147 4.508662 GCTCCATGCAGAAAGTAACTACT 58.491 43.478 0.00 0.00 42.31 2.57
480 1148 4.938226 GCTCCATGCAGAAAGTAACTACTT 59.062 41.667 0.00 0.00 43.88 2.24
481 1149 5.163814 GCTCCATGCAGAAAGTAACTACTTG 60.164 44.000 2.94 0.00 42.51 3.16
482 1150 5.865085 TCCATGCAGAAAGTAACTACTTGT 58.135 37.500 2.94 0.00 45.17 3.16
483 1151 6.999950 TCCATGCAGAAAGTAACTACTTGTA 58.000 36.000 2.94 0.00 45.17 2.41
484 1152 6.872020 TCCATGCAGAAAGTAACTACTTGTAC 59.128 38.462 2.94 0.00 45.17 2.90
485 1153 6.649141 CCATGCAGAAAGTAACTACTTGTACA 59.351 38.462 2.94 0.00 45.17 2.90
486 1154 7.172532 CCATGCAGAAAGTAACTACTTGTACAA 59.827 37.037 8.28 8.28 45.17 2.41
487 1155 8.556194 CATGCAGAAAGTAACTACTTGTACAAA 58.444 33.333 10.03 0.00 45.17 2.83
488 1156 8.495361 TGCAGAAAGTAACTACTTGTACAAAA 57.505 30.769 10.03 0.00 45.17 2.44
489 1157 8.948145 TGCAGAAAGTAACTACTTGTACAAAAA 58.052 29.630 10.03 0.00 45.17 1.94
565 1234 8.880878 AATTGTGTTAAAAATAACAGTGGTCC 57.119 30.769 1.87 0.00 40.21 4.46
570 1239 4.864704 AAAAATAACAGTGGTCCGCATT 57.135 36.364 4.97 1.25 0.00 3.56
574 1243 2.793278 AACAGTGGTCCGCATTTTTC 57.207 45.000 4.97 0.00 0.00 2.29
575 1244 1.686355 ACAGTGGTCCGCATTTTTCA 58.314 45.000 4.97 0.00 0.00 2.69
576 1245 1.608590 ACAGTGGTCCGCATTTTTCAG 59.391 47.619 4.97 0.00 0.00 3.02
577 1246 0.598065 AGTGGTCCGCATTTTTCAGC 59.402 50.000 4.97 0.00 0.00 4.26
578 1247 0.598065 GTGGTCCGCATTTTTCAGCT 59.402 50.000 0.00 0.00 0.00 4.24
579 1248 0.597568 TGGTCCGCATTTTTCAGCTG 59.402 50.000 7.63 7.63 0.00 4.24
580 1249 0.598065 GGTCCGCATTTTTCAGCTGT 59.402 50.000 14.67 0.00 0.00 4.40
581 1250 1.810151 GGTCCGCATTTTTCAGCTGTA 59.190 47.619 14.67 0.00 0.00 2.74
586 1256 3.189287 CCGCATTTTTCAGCTGTAGTCTT 59.811 43.478 14.67 0.00 0.00 3.01
621 1291 8.663911 TCAAACAAAATGTTCATTCTTTCCAAC 58.336 29.630 0.00 0.00 40.14 3.77
624 1294 9.883142 AACAAAATGTTCATTCTTTCCAACTAA 57.117 25.926 0.00 0.00 35.27 2.24
625 1295 9.313118 ACAAAATGTTCATTCTTTCCAACTAAC 57.687 29.630 0.00 0.00 0.00 2.34
626 1296 8.764287 CAAAATGTTCATTCTTTCCAACTAACC 58.236 33.333 0.00 0.00 0.00 2.85
627 1297 5.682943 TGTTCATTCTTTCCAACTAACCG 57.317 39.130 0.00 0.00 0.00 4.44
636 1306 3.235157 TCCAACTAACCGGTTCATACG 57.765 47.619 26.16 10.15 0.00 3.06
641 1311 2.096496 ACTAACCGGTTCATACGACTCG 59.904 50.000 26.16 0.00 0.00 4.18
678 1356 9.528018 ACAAATGTTTTGGTATCAAAGTTAGTG 57.472 29.630 0.66 2.34 42.93 2.74
687 1365 8.259049 TGGTATCAAAGTTAGTGATAAAACCG 57.741 34.615 0.00 0.00 39.16 4.44
691 1369 6.432107 TCAAAGTTAGTGATAAAACCGTTGC 58.568 36.000 0.00 0.00 0.00 4.17
703 1381 9.999660 TGATAAAACCGTTGCCATATATTACTA 57.000 29.630 0.00 0.00 0.00 1.82
732 1410 7.826744 ACATTTTAGAAAACAACACAAATGGGT 59.173 29.630 0.00 0.00 35.41 4.51
733 1411 8.672815 CATTTTAGAAAACAACACAAATGGGTT 58.327 29.630 0.00 0.00 43.51 4.11
735 1413 9.892130 TTTTAGAAAACAACACAAATGGGTTAT 57.108 25.926 0.00 0.00 40.16 1.89
736 1414 8.879342 TTAGAAAACAACACAAATGGGTTATG 57.121 30.769 0.00 0.00 40.16 1.90
739 1417 8.210265 AGAAAACAACACAAATGGGTTATGAAT 58.790 29.630 0.00 0.00 40.16 2.57
741 1419 9.838339 AAAACAACACAAATGGGTTATGAATTA 57.162 25.926 0.00 0.00 40.16 1.40
742 1420 9.487790 AAACAACACAAATGGGTTATGAATTAG 57.512 29.630 0.00 0.00 40.16 1.73
743 1421 8.189119 ACAACACAAATGGGTTATGAATTAGT 57.811 30.769 0.00 0.00 40.16 2.24
744 1422 8.087750 ACAACACAAATGGGTTATGAATTAGTG 58.912 33.333 0.00 0.00 40.16 2.74
745 1423 8.303156 CAACACAAATGGGTTATGAATTAGTGA 58.697 33.333 0.00 0.00 40.16 3.41
746 1424 8.055279 ACACAAATGGGTTATGAATTAGTGAG 57.945 34.615 0.00 0.00 0.00 3.51
747 1425 7.122650 ACACAAATGGGTTATGAATTAGTGAGG 59.877 37.037 0.00 0.00 0.00 3.86
748 1426 6.096846 ACAAATGGGTTATGAATTAGTGAGGC 59.903 38.462 0.00 0.00 0.00 4.70
749 1427 4.164843 TGGGTTATGAATTAGTGAGGCC 57.835 45.455 0.00 0.00 0.00 5.19
750 1428 3.785887 TGGGTTATGAATTAGTGAGGCCT 59.214 43.478 3.86 3.86 0.00 5.19
751 1429 4.972568 TGGGTTATGAATTAGTGAGGCCTA 59.027 41.667 4.42 0.00 0.00 3.93
752 1430 5.163237 TGGGTTATGAATTAGTGAGGCCTAC 60.163 44.000 4.42 4.59 0.00 3.18
753 1431 5.163237 GGGTTATGAATTAGTGAGGCCTACA 60.163 44.000 4.42 2.40 0.00 2.74
754 1432 6.465894 GGGTTATGAATTAGTGAGGCCTACAT 60.466 42.308 4.42 4.51 0.00 2.29
755 1433 7.256547 GGGTTATGAATTAGTGAGGCCTACATA 60.257 40.741 4.42 3.56 0.00 2.29
756 1434 8.154856 GGTTATGAATTAGTGAGGCCTACATAA 58.845 37.037 4.42 5.27 0.00 1.90
757 1435 9.555727 GTTATGAATTAGTGAGGCCTACATAAA 57.444 33.333 4.42 5.09 32.33 1.40
759 1437 7.859325 TGAATTAGTGAGGCCTACATAAAAC 57.141 36.000 4.42 4.55 0.00 2.43
760 1438 7.630082 TGAATTAGTGAGGCCTACATAAAACT 58.370 34.615 4.42 3.72 0.00 2.66
761 1439 8.764558 TGAATTAGTGAGGCCTACATAAAACTA 58.235 33.333 4.42 2.71 0.00 2.24
762 1440 8.959705 AATTAGTGAGGCCTACATAAAACTAC 57.040 34.615 4.42 0.00 0.00 2.73
788 1466 4.000988 AGACATTTACCGTGGACATGAAC 58.999 43.478 0.00 0.00 0.00 3.18
882 1573 7.660030 AAAAGGAGGAAAAACATTTGAGAGA 57.340 32.000 0.00 0.00 0.00 3.10
886 1577 7.720442 AGGAGGAAAAACATTTGAGAGAAAAG 58.280 34.615 0.00 0.00 0.00 2.27
936 1629 0.107165 AGAAAGGGCCCGTTCTATGC 60.107 55.000 41.20 21.76 41.54 3.14
940 1633 1.362224 AGGGCCCGTTCTATGCATAT 58.638 50.000 18.44 0.00 0.00 1.78
944 1637 4.345257 AGGGCCCGTTCTATGCATATATAG 59.655 45.833 18.44 0.00 32.99 1.31
960 1653 7.839200 TGCATATATAGATAGAGTACAGCCCAA 59.161 37.037 0.00 0.00 0.00 4.12
1006 1700 0.106167 TCACTCCCGAATCCCGATCT 60.106 55.000 0.00 0.00 41.76 2.75
1072 1777 2.191802 CAGCAGCAGATTAGTCGTCTG 58.808 52.381 0.00 0.00 44.60 3.51
1117 1824 2.053627 GAACAACAGAAATGCTTGGCG 58.946 47.619 0.00 0.00 0.00 5.69
1338 2114 0.320508 GGGACTTCACGACCAACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1409 2185 2.129620 CCGTTACCATCGGGGATCA 58.870 57.895 0.00 0.00 43.68 2.92
1466 2245 3.121030 CGGGCTCAGAAGGTTGCG 61.121 66.667 0.00 0.00 0.00 4.85
1473 2252 2.483876 CTCAGAAGGTTGCGTCTTTCA 58.516 47.619 5.83 0.00 0.00 2.69
1475 2254 3.275143 TCAGAAGGTTGCGTCTTTCAAA 58.725 40.909 5.83 0.00 0.00 2.69
1477 2256 2.031683 AGAAGGTTGCGTCTTTCAAACG 59.968 45.455 5.83 0.00 42.87 3.60
1482 2261 1.370609 TGCGTCTTTCAAACGTGGAA 58.629 45.000 0.00 0.00 42.02 3.53
1486 2268 2.719046 CGTCTTTCAAACGTGGAATTGC 59.281 45.455 4.02 0.00 35.47 3.56
1488 2270 4.109050 GTCTTTCAAACGTGGAATTGCAA 58.891 39.130 0.00 0.00 0.00 4.08
1492 2274 2.126467 CAAACGTGGAATTGCAACTGG 58.874 47.619 0.00 0.00 0.00 4.00
1512 2294 0.938637 CAGATCTCGCGAGCCACATC 60.939 60.000 30.97 25.55 0.00 3.06
1513 2295 1.066422 GATCTCGCGAGCCACATCA 59.934 57.895 30.97 12.68 0.00 3.07
1514 2296 0.938637 GATCTCGCGAGCCACATCAG 60.939 60.000 30.97 5.49 0.00 2.90
1542 2324 2.686470 TGCCCTGCTCTGGAGGAG 60.686 66.667 11.37 11.37 45.14 3.69
1602 2384 1.103987 TCAAGATCGCCTCCTCCTCG 61.104 60.000 0.00 0.00 0.00 4.63
1612 2394 1.404851 CCTCCTCCTCGCTCAAGAAAC 60.405 57.143 0.00 0.00 0.00 2.78
1635 2420 0.384309 TCGTCCATGGCGAGTACATC 59.616 55.000 22.05 0.00 34.11 3.06
1636 2421 0.102300 CGTCCATGGCGAGTACATCA 59.898 55.000 19.72 0.00 0.00 3.07
1641 2435 2.138320 CATGGCGAGTACATCATGGAC 58.862 52.381 0.00 0.00 34.89 4.02
1725 2519 2.421424 GGAGCTCCATCACATTGTTGAC 59.579 50.000 28.43 0.00 35.64 3.18
1726 2520 2.421424 GAGCTCCATCACATTGTTGACC 59.579 50.000 0.87 0.00 0.00 4.02
1731 2525 2.029110 CCATCACATTGTTGACCCAACC 60.029 50.000 7.29 0.00 42.96 3.77
1786 2580 0.659957 GTTTCATCTGCGCTGGATCC 59.340 55.000 14.70 4.20 0.00 3.36
1789 2583 1.597302 CATCTGCGCTGGATCCAGG 60.597 63.158 36.92 27.96 43.77 4.45
1805 2600 0.174389 CAGGAGGACGTGATGACCAG 59.826 60.000 0.00 0.00 34.56 4.00
1808 2603 1.822990 GGAGGACGTGATGACCAGTTA 59.177 52.381 0.00 0.00 34.56 2.24
1849 2644 3.814842 TCTAATGTGACAACCTTGCACTG 59.185 43.478 0.00 0.00 36.69 3.66
1854 2649 0.531974 GACAACCTTGCACTGGTCGA 60.532 55.000 10.59 0.00 36.69 4.20
2364 3162 7.393234 TGCATCTCCTTAATTAATTTATCCGGG 59.607 37.037 5.91 0.00 0.00 5.73
2420 3218 8.603898 TCTATCTATCTGGGTTTCAGTTGTTA 57.396 34.615 0.00 0.00 43.76 2.41
2430 3228 6.015519 TGGGTTTCAGTTGTTATTCAATGAGG 60.016 38.462 0.00 0.00 38.38 3.86
2451 3249 4.898861 AGGGTCATGAGAATCTTCCTCTAC 59.101 45.833 0.00 0.00 34.92 2.59
2460 3258 8.651589 TGAGAATCTTCCTCTACTCAAGTTTA 57.348 34.615 0.00 0.00 34.92 2.01
2485 3283 1.271597 CCTGAGAACCTTGTTCCTGGG 60.272 57.143 3.47 0.64 0.00 4.45
2488 3286 1.143073 GAGAACCTTGTTCCTGGGTGT 59.857 52.381 3.47 0.00 33.20 4.16
2519 3317 1.735376 GCGATGACTTCCTCGGGCTA 61.735 60.000 6.13 0.00 35.48 3.93
2532 3330 0.178068 CGGGCTACAGCAATACCTGT 59.822 55.000 3.24 0.23 46.98 4.00
2554 3352 2.354203 GGAACTCACCTAACCTGCAGAG 60.354 54.545 17.39 8.04 0.00 3.35
2561 3359 0.107945 CTAACCTGCAGAGGCTCACC 60.108 60.000 17.39 7.37 44.33 4.02
2562 3360 0.835971 TAACCTGCAGAGGCTCACCA 60.836 55.000 17.39 11.75 44.33 4.17
2598 3399 5.648572 AGGTGCGACTACTACTTATTTCAC 58.351 41.667 0.00 0.00 0.00 3.18
2622 3426 9.017669 CACGAACTATTACCATAACTACTCAAC 57.982 37.037 0.00 0.00 0.00 3.18
2647 3452 7.325660 ACATTGTGTGATATTGATTCCACTC 57.674 36.000 0.00 0.00 0.00 3.51
2648 3453 6.037500 ACATTGTGTGATATTGATTCCACTCG 59.962 38.462 0.00 0.00 0.00 4.18
2649 3454 5.084818 TGTGTGATATTGATTCCACTCGT 57.915 39.130 0.00 0.00 0.00 4.18
2650 3455 6.215495 TGTGTGATATTGATTCCACTCGTA 57.785 37.500 0.00 0.00 0.00 3.43
2652 3457 6.701400 TGTGTGATATTGATTCCACTCGTATG 59.299 38.462 0.00 0.00 0.00 2.39
2653 3458 5.696270 TGTGATATTGATTCCACTCGTATGC 59.304 40.000 0.00 0.00 0.00 3.14
2730 3536 5.911178 ACCAATCATATTCTAAGGACCTGGA 59.089 40.000 0.00 0.00 0.00 3.86
2879 3703 4.672587 AGGAAAAAGAAAAGCAAGGTCC 57.327 40.909 0.00 0.00 0.00 4.46
2978 3812 6.128172 GGTTGCATGTCTAAGCATATGTATCC 60.128 42.308 4.29 0.00 40.94 2.59
3006 3843 9.206870 CTGTCCGTTTACCTTTTTATTAGTACA 57.793 33.333 0.00 0.00 0.00 2.90
3013 3850 8.789825 TTACCTTTTTATTAGTACATCGGCAA 57.210 30.769 0.00 0.00 0.00 4.52
3116 3964 9.770097 ACTATATGTTAAGTGAGGATTGACATG 57.230 33.333 6.40 0.00 37.42 3.21
3173 4023 6.480524 TTAGATTGTTGGATCGTTTGAGTG 57.519 37.500 0.00 0.00 0.00 3.51
3180 4030 1.144969 GATCGTTTGAGTGCACCGAA 58.855 50.000 14.63 8.50 33.20 4.30
3192 4042 2.092211 GTGCACCGAATCGTAACTTCTG 59.908 50.000 5.22 0.00 0.00 3.02
3196 4046 2.288579 ACCGAATCGTAACTTCTGTGCA 60.289 45.455 0.82 0.00 0.00 4.57
3198 4058 3.370978 CCGAATCGTAACTTCTGTGCAAT 59.629 43.478 0.82 0.00 0.00 3.56
3207 4067 6.073765 CGTAACTTCTGTGCAATTGTAGACTT 60.074 38.462 7.40 5.84 0.00 3.01
3222 4082 5.690865 TGTAGACTTGGTTCTTGGTTGAAT 58.309 37.500 0.00 0.00 0.00 2.57
3235 4095 5.299279 TCTTGGTTGAATTGGAAGTGTCTTC 59.701 40.000 1.39 1.39 0.00 2.87
3255 4118 7.340487 TGTCTTCTATAGCATCGTCCATATGAT 59.660 37.037 3.65 0.00 0.00 2.45
3256 4119 8.194104 GTCTTCTATAGCATCGTCCATATGATT 58.806 37.037 3.65 0.00 0.00 2.57
3257 4120 8.753133 TCTTCTATAGCATCGTCCATATGATTT 58.247 33.333 3.65 0.00 0.00 2.17
3316 4198 7.293745 GTGTATGTCACTGATTTTCTGTCAAG 58.706 38.462 0.00 0.00 43.13 3.02
3317 4199 4.818534 TGTCACTGATTTTCTGTCAAGC 57.181 40.909 0.00 0.00 0.00 4.01
3336 4218 1.402984 GCGAGACTGTTGTCCACCTAG 60.403 57.143 0.00 0.00 43.91 3.02
3379 4266 4.023291 ACCTTTCTTGCCTTGACTCAAAA 58.977 39.130 0.00 0.00 0.00 2.44
3385 4272 4.834496 TCTTGCCTTGACTCAAAAATCCAT 59.166 37.500 0.00 0.00 0.00 3.41
3497 4388 6.582636 TCTACAATGCCATAAACCTACTGAG 58.417 40.000 0.00 0.00 0.00 3.35
3547 6158 2.901840 CGCCCGAACCCCATCATG 60.902 66.667 0.00 0.00 0.00 3.07
3590 6205 3.600388 CTTCAAGACGGGATTGCTACTT 58.400 45.455 0.00 0.00 0.00 2.24
3626 6241 0.905357 CGACCCAACCAGGAAGAGAT 59.095 55.000 0.00 0.00 41.22 2.75
3682 6311 7.538678 GCAATAATTAGTGCCGAATAAATGGAG 59.461 37.037 23.81 0.00 41.02 3.86
3685 6314 7.823745 AATTAGTGCCGAATAAATGGAGAAT 57.176 32.000 0.00 0.00 0.00 2.40
3850 6521 2.134789 AGGAAGGAATCACACATGGC 57.865 50.000 0.00 0.00 0.00 4.40
3851 6522 1.355381 AGGAAGGAATCACACATGGCA 59.645 47.619 0.00 0.00 0.00 4.92
3852 6523 2.170166 GGAAGGAATCACACATGGCAA 58.830 47.619 0.00 0.00 0.00 4.52
3853 6524 2.562298 GGAAGGAATCACACATGGCAAA 59.438 45.455 0.00 0.00 0.00 3.68
3854 6525 3.367703 GGAAGGAATCACACATGGCAAAG 60.368 47.826 0.00 0.00 0.00 2.77
3855 6526 2.880443 AGGAATCACACATGGCAAAGT 58.120 42.857 0.00 0.00 0.00 2.66
3856 6527 3.233507 AGGAATCACACATGGCAAAGTT 58.766 40.909 0.00 0.00 0.00 2.66
3857 6528 3.642848 AGGAATCACACATGGCAAAGTTT 59.357 39.130 0.00 0.00 0.00 2.66
3858 6529 4.101430 AGGAATCACACATGGCAAAGTTTT 59.899 37.500 0.00 0.00 0.00 2.43
3859 6530 4.815846 GGAATCACACATGGCAAAGTTTTT 59.184 37.500 0.00 0.00 0.00 1.94
3885 6556 8.199176 TGCAACATGGCAAATTTAATCTTATG 57.801 30.769 0.00 0.00 41.65 1.90
3886 6557 7.823310 TGCAACATGGCAAATTTAATCTTATGT 59.177 29.630 0.00 0.00 41.65 2.29
3887 6558 9.311916 GCAACATGGCAAATTTAATCTTATGTA 57.688 29.630 0.00 0.00 0.00 2.29
3890 6561 9.816354 ACATGGCAAATTTAATCTTATGTAACC 57.184 29.630 0.00 0.00 0.00 2.85
3891 6562 9.814899 CATGGCAAATTTAATCTTATGTAACCA 57.185 29.630 0.00 0.00 0.00 3.67
3893 6564 9.814899 TGGCAAATTTAATCTTATGTAACCATG 57.185 29.630 0.00 0.00 32.29 3.66
3894 6565 8.764287 GGCAAATTTAATCTTATGTAACCATGC 58.236 33.333 0.00 0.00 32.29 4.06
3895 6566 9.311916 GCAAATTTAATCTTATGTAACCATGCA 57.688 29.630 0.00 0.00 32.29 3.96
3913 6584 7.656412 ACCATGCAAATTTAATTTTTGAACCC 58.344 30.769 12.96 0.42 36.40 4.11
3914 6585 7.505248 ACCATGCAAATTTAATTTTTGAACCCT 59.495 29.630 12.96 0.00 36.40 4.34
3915 6586 8.358895 CCATGCAAATTTAATTTTTGAACCCTT 58.641 29.630 12.96 0.00 36.40 3.95
3918 6589 8.841300 TGCAAATTTAATTTTTGAACCCTTACC 58.159 29.630 12.96 0.00 36.40 2.85
3919 6590 9.062524 GCAAATTTAATTTTTGAACCCTTACCT 57.937 29.630 12.96 0.00 36.40 3.08
3947 6618 5.833406 TTGTGCTATGACAATTACCATGG 57.167 39.130 11.19 11.19 30.75 3.66
3948 6619 5.109500 TGTGCTATGACAATTACCATGGA 57.891 39.130 21.47 0.00 0.00 3.41
3949 6620 5.504853 TGTGCTATGACAATTACCATGGAA 58.495 37.500 21.47 8.96 0.00 3.53
3950 6621 5.948758 TGTGCTATGACAATTACCATGGAAA 59.051 36.000 21.47 2.58 0.00 3.13
3951 6622 6.435591 TGTGCTATGACAATTACCATGGAAAA 59.564 34.615 21.47 12.75 0.00 2.29
3952 6623 7.123997 TGTGCTATGACAATTACCATGGAAAAT 59.876 33.333 21.47 14.55 0.00 1.82
3953 6624 7.981225 GTGCTATGACAATTACCATGGAAAATT 59.019 33.333 21.47 19.40 0.00 1.82
3954 6625 8.196771 TGCTATGACAATTACCATGGAAAATTC 58.803 33.333 21.47 12.67 0.00 2.17
3955 6626 8.416329 GCTATGACAATTACCATGGAAAATTCT 58.584 33.333 21.47 11.25 0.00 2.40
3959 6630 9.844257 TGACAATTACCATGGAAAATTCTTTTT 57.156 25.926 21.47 5.47 37.75 1.94
3982 6653 7.693969 TTTTGCCCCATGGTTAATTATTTTG 57.306 32.000 11.73 0.00 0.00 2.44
3983 6654 5.365021 TGCCCCATGGTTAATTATTTTGG 57.635 39.130 11.73 0.69 0.00 3.28
3984 6655 4.164988 TGCCCCATGGTTAATTATTTTGGG 59.835 41.667 11.73 12.87 41.64 4.12
3985 6656 4.410555 GCCCCATGGTTAATTATTTTGGGA 59.589 41.667 11.73 0.00 44.15 4.37
3986 6657 5.104318 GCCCCATGGTTAATTATTTTGGGAA 60.104 40.000 11.73 0.00 44.15 3.97
3987 6658 6.353323 CCCCATGGTTAATTATTTTGGGAAC 58.647 40.000 11.73 1.27 44.15 3.62
3988 6659 6.069963 CCCCATGGTTAATTATTTTGGGAACA 60.070 38.462 11.73 0.00 44.15 3.18
3989 6660 7.366371 CCCCATGGTTAATTATTTTGGGAACAT 60.366 37.037 11.73 1.64 44.15 2.71
3990 6661 8.052141 CCCATGGTTAATTATTTTGGGAACATT 58.948 33.333 11.73 0.00 44.15 2.71
3991 6662 8.891720 CCATGGTTAATTATTTTGGGAACATTG 58.108 33.333 2.57 0.00 42.32 2.82
3992 6663 7.913674 TGGTTAATTATTTTGGGAACATTGC 57.086 32.000 0.00 0.00 42.32 3.56
3993 6664 7.453393 TGGTTAATTATTTTGGGAACATTGCA 58.547 30.769 0.00 0.00 42.32 4.08
3994 6665 7.389053 TGGTTAATTATTTTGGGAACATTGCAC 59.611 33.333 0.00 0.00 42.32 4.57
3995 6666 7.389053 GGTTAATTATTTTGGGAACATTGCACA 59.611 33.333 0.00 0.00 42.32 4.57
3996 6667 8.945057 GTTAATTATTTTGGGAACATTGCACAT 58.055 29.630 0.00 0.00 42.32 3.21
3997 6668 7.999450 AATTATTTTGGGAACATTGCACATT 57.001 28.000 0.00 0.00 42.32 2.71
3998 6669 7.999450 ATTATTTTGGGAACATTGCACATTT 57.001 28.000 0.00 0.00 42.32 2.32
3999 6670 7.814264 TTATTTTGGGAACATTGCACATTTT 57.186 28.000 0.00 0.00 42.32 1.82
4000 6671 5.747951 TTTTGGGAACATTGCACATTTTC 57.252 34.783 0.00 0.00 42.32 2.29
4001 6672 3.399440 TGGGAACATTGCACATTTTCC 57.601 42.857 13.82 13.82 35.87 3.13
4002 6673 2.698803 GGGAACATTGCACATTTTCCC 58.301 47.619 20.44 20.44 46.66 3.97
4003 6674 2.336667 GGAACATTGCACATTTTCCCG 58.663 47.619 12.24 0.00 31.19 5.14
4004 6675 1.726248 GAACATTGCACATTTTCCCGC 59.274 47.619 0.00 0.00 0.00 6.13
4005 6676 0.388391 ACATTGCACATTTTCCCGCG 60.388 50.000 0.00 0.00 0.00 6.46
4006 6677 1.445926 ATTGCACATTTTCCCGCGC 60.446 52.632 0.00 0.00 0.00 6.86
4007 6678 3.888079 TTGCACATTTTCCCGCGCG 62.888 57.895 25.67 25.67 0.00 6.86
4009 6680 4.101790 CACATTTTCCCGCGCGCT 62.102 61.111 30.48 4.97 0.00 5.92
4010 6681 4.101790 ACATTTTCCCGCGCGCTG 62.102 61.111 30.48 23.42 0.00 5.18
4011 6682 4.101790 CATTTTCCCGCGCGCTGT 62.102 61.111 30.48 2.68 0.00 4.40
4012 6683 3.361977 ATTTTCCCGCGCGCTGTT 61.362 55.556 30.48 3.04 0.00 3.16
4013 6684 3.609214 ATTTTCCCGCGCGCTGTTG 62.609 57.895 30.48 13.50 0.00 3.33
4022 6693 2.671619 GCGCTGTTGGGCCAACTA 60.672 61.111 40.22 28.07 43.85 2.24
4023 6694 2.690778 GCGCTGTTGGGCCAACTAG 61.691 63.158 40.22 33.98 43.85 2.57
4024 6695 1.302511 CGCTGTTGGGCCAACTAGT 60.303 57.895 40.22 0.00 43.85 2.57
4025 6696 0.889186 CGCTGTTGGGCCAACTAGTT 60.889 55.000 40.22 1.12 43.85 2.24
4026 6697 0.881796 GCTGTTGGGCCAACTAGTTC 59.118 55.000 40.22 24.03 43.85 3.01
4027 6698 1.817740 GCTGTTGGGCCAACTAGTTCA 60.818 52.381 40.22 23.69 43.85 3.18
4028 6699 2.582052 CTGTTGGGCCAACTAGTTCAA 58.418 47.619 40.22 23.01 43.85 2.69
4029 6700 3.157087 CTGTTGGGCCAACTAGTTCAAT 58.843 45.455 40.22 0.00 43.85 2.57
4030 6701 3.571590 TGTTGGGCCAACTAGTTCAATT 58.428 40.909 40.22 0.00 43.85 2.32
4031 6702 3.572255 TGTTGGGCCAACTAGTTCAATTC 59.428 43.478 40.22 17.46 43.85 2.17
4032 6703 2.802719 TGGGCCAACTAGTTCAATTCC 58.197 47.619 2.13 4.36 0.00 3.01
4033 6704 2.109128 TGGGCCAACTAGTTCAATTCCA 59.891 45.455 2.13 6.84 0.00 3.53
4034 6705 2.492088 GGGCCAACTAGTTCAATTCCAC 59.508 50.000 4.77 0.00 0.00 4.02
4035 6706 3.421844 GGCCAACTAGTTCAATTCCACT 58.578 45.455 4.77 0.00 0.00 4.00
4036 6707 3.440522 GGCCAACTAGTTCAATTCCACTC 59.559 47.826 4.77 0.00 0.00 3.51
4037 6708 3.125316 GCCAACTAGTTCAATTCCACTCG 59.875 47.826 4.77 0.00 0.00 4.18
4038 6709 3.684788 CCAACTAGTTCAATTCCACTCGG 59.315 47.826 4.77 0.00 0.00 4.63
4039 6710 3.611766 ACTAGTTCAATTCCACTCGGG 57.388 47.619 0.00 0.00 38.37 5.14
4040 6711 2.236395 ACTAGTTCAATTCCACTCGGGG 59.764 50.000 0.00 0.00 37.22 5.73
4041 6712 0.328258 AGTTCAATTCCACTCGGGGG 59.672 55.000 0.00 0.00 37.22 5.40
4059 6730 4.082665 GGGGGTCCAGTAATAAGTAAGC 57.917 50.000 0.00 0.00 0.00 3.09
4060 6731 3.181447 GGGGGTCCAGTAATAAGTAAGCC 60.181 52.174 0.00 0.00 0.00 4.35
4061 6732 3.181447 GGGGTCCAGTAATAAGTAAGCCC 60.181 52.174 0.00 0.00 35.97 5.19
4062 6733 3.457012 GGGTCCAGTAATAAGTAAGCCCA 59.543 47.826 0.00 0.00 32.98 5.36
4063 6734 4.104261 GGGTCCAGTAATAAGTAAGCCCAT 59.896 45.833 0.00 0.00 32.98 4.00
4064 6735 5.398695 GGGTCCAGTAATAAGTAAGCCCATT 60.399 44.000 0.00 0.00 32.98 3.16
4065 6736 6.183361 GGGTCCAGTAATAAGTAAGCCCATTA 60.183 42.308 0.00 0.00 32.98 1.90
4066 6737 6.935208 GGTCCAGTAATAAGTAAGCCCATTAG 59.065 42.308 0.00 0.00 0.00 1.73
4067 6738 6.935208 GTCCAGTAATAAGTAAGCCCATTAGG 59.065 42.308 0.00 0.00 39.47 2.69
4068 6739 6.847567 TCCAGTAATAAGTAAGCCCATTAGGA 59.152 38.462 0.00 0.00 38.24 2.94
4069 6740 7.348801 TCCAGTAATAAGTAAGCCCATTAGGAA 59.651 37.037 0.00 0.00 38.24 3.36
4070 6741 8.164070 CCAGTAATAAGTAAGCCCATTAGGAAT 58.836 37.037 0.00 0.00 38.24 3.01
4071 6742 9.003658 CAGTAATAAGTAAGCCCATTAGGAATG 57.996 37.037 0.00 0.00 38.24 2.67
4084 6755 5.394802 CATTAGGAATGGTATCTCTCGTCG 58.605 45.833 0.00 0.00 35.23 5.12
4088 6759 2.642154 ATGGTATCTCTCGTCGGTCT 57.358 50.000 0.00 0.00 0.00 3.85
4091 6762 2.681848 TGGTATCTCTCGTCGGTCTTTC 59.318 50.000 0.00 0.00 0.00 2.62
4099 6770 0.109226 CGTCGGTCTTTCTCCTCACC 60.109 60.000 0.00 0.00 0.00 4.02
4116 6791 0.618981 ACCCCCGAATCTTTCTCCAC 59.381 55.000 0.00 0.00 0.00 4.02
4168 6843 1.757699 GCAGATTAGTCGTCTCCCCTT 59.242 52.381 0.00 0.00 0.00 3.95
4175 6851 0.679321 GTCGTCTCCCCTTCCTACGT 60.679 60.000 0.00 0.00 35.21 3.57
4176 6852 0.679002 TCGTCTCCCCTTCCTACGTG 60.679 60.000 0.00 0.00 35.21 4.49
4208 6884 0.035317 AGAACAGCCGACATGCTTGA 59.965 50.000 6.60 0.00 40.32 3.02
4209 6885 0.874390 GAACAGCCGACATGCTTGAA 59.126 50.000 6.60 0.00 40.32 2.69
4215 6891 0.374758 CCGACATGCTTGAATCCACG 59.625 55.000 6.60 0.00 0.00 4.94
4244 6920 4.717629 CGAGCCGAAGCGTCCACA 62.718 66.667 0.00 0.00 46.67 4.17
4250 6926 1.374125 CGAAGCGTCCACACCATGA 60.374 57.895 0.00 0.00 0.00 3.07
4317 6999 2.990479 GACCTCCTCCACGCCATT 59.010 61.111 0.00 0.00 0.00 3.16
4320 7002 0.325296 ACCTCCTCCACGCCATTCTA 60.325 55.000 0.00 0.00 0.00 2.10
4325 7007 0.249447 CTCCACGCCATTCTATCGCA 60.249 55.000 0.00 0.00 0.00 5.10
4418 7100 2.579787 CCTCGACATCGACCGTGC 60.580 66.667 0.00 0.00 44.22 5.34
4419 7101 2.178273 CTCGACATCGACCGTGCA 59.822 61.111 0.00 0.00 44.22 4.57
4422 7104 2.152699 CGACATCGACCGTGCAGAC 61.153 63.158 0.00 0.00 43.02 3.51
4423 7105 2.126463 ACATCGACCGTGCAGACG 60.126 61.111 0.00 0.00 45.67 4.18
4434 7116 4.064491 GCAGACGTGCGTGCTGTC 62.064 66.667 17.96 8.96 40.71 3.51
4435 7117 3.406361 CAGACGTGCGTGCTGTCC 61.406 66.667 0.67 0.00 33.09 4.02
4436 7118 3.911698 AGACGTGCGTGCTGTCCA 61.912 61.111 0.67 0.00 33.09 4.02
4486 7174 2.434185 GCCGCCATGACTTCACGA 60.434 61.111 0.00 0.00 0.00 4.35
4487 7175 2.456119 GCCGCCATGACTTCACGAG 61.456 63.158 0.00 0.00 0.00 4.18
4494 7182 0.976641 ATGACTTCACGAGCCTGGAA 59.023 50.000 0.00 0.00 0.00 3.53
4497 7185 1.205893 GACTTCACGAGCCTGGAAGAT 59.794 52.381 0.00 0.00 40.28 2.40
4558 7264 2.516695 TCCGCGGCGACATAGGTA 60.517 61.111 25.92 0.00 0.00 3.08
4574 7283 3.619900 AGGTAGAGATACATGGCCTCA 57.380 47.619 3.32 0.00 0.00 3.86
4576 7285 2.029828 GGTAGAGATACATGGCCTCACG 60.030 54.545 3.32 0.00 0.00 4.35
4596 7305 1.067354 GGGCTCAAAAGGTTGCATCTG 60.067 52.381 0.00 0.00 34.50 2.90
4606 7315 3.626996 TTGCATCTGTCCGGCCTGG 62.627 63.158 0.00 3.90 40.09 4.45
4688 7749 1.338973 CCTGCAACTGAACATGTGCTT 59.661 47.619 5.18 0.00 0.00 3.91
4698 7759 1.696063 ACATGTGCTTCCACTTGCTT 58.304 45.000 0.00 0.00 45.79 3.91
4824 7889 2.548920 CCCAGCTCTTGTTTCTCTTCGT 60.549 50.000 0.00 0.00 0.00 3.85
4951 8016 5.440610 ACCAGAACATCAAAGAACAACTCT 58.559 37.500 0.00 0.00 35.13 3.24
5014 8079 0.453782 GCATTTTGCGGTCACGGTAC 60.454 55.000 0.00 0.00 41.36 3.34
5031 8107 5.063944 CACGGTACATCTTCTTCTTGATTGG 59.936 44.000 0.00 0.00 0.00 3.16
5032 8108 4.034510 CGGTACATCTTCTTCTTGATTGGC 59.965 45.833 0.00 0.00 0.00 4.52
5162 8238 3.433314 CCTTGGGAGTCATGAGGATCTTG 60.433 52.174 0.00 0.00 41.23 3.02
5179 8255 6.150140 AGGATCTTGCTGTATTCAAGTTTGAC 59.850 38.462 0.00 0.00 41.13 3.18
5200 8276 4.273318 ACAACCTGACAAGCTTTTCTCTT 58.727 39.130 13.50 0.29 0.00 2.85
5257 8333 3.007635 GCACCAATACCTGTACAACTCC 58.992 50.000 0.00 0.00 0.00 3.85
5324 8404 9.294030 GCTACTTCTTCCATCAACAATTAATTG 57.706 33.333 23.60 23.60 43.26 2.32
5388 8484 1.963338 GCGCTGCTCAACTGGTCTT 60.963 57.895 0.00 0.00 0.00 3.01
5390 8486 0.601046 CGCTGCTCAACTGGTCTTGA 60.601 55.000 0.00 0.00 0.00 3.02
5567 8663 2.629617 AGGAATCTGCCAAACAACAAGG 59.370 45.455 0.00 0.00 0.00 3.61
5602 8698 5.547465 TCGCTCAAGAGGAAGAAAAACATA 58.453 37.500 0.00 0.00 0.00 2.29
5606 8705 6.016276 GCTCAAGAGGAAGAAAAACATAACCA 60.016 38.462 0.00 0.00 0.00 3.67
5617 8717 9.965824 AAGAAAAACATAACCAAACTCACTATG 57.034 29.630 0.00 0.00 0.00 2.23
5619 8719 5.897377 AACATAACCAAACTCACTATGGC 57.103 39.130 0.00 0.00 37.77 4.40
5747 8860 2.496899 TGAGTCCTTGGGCTTGATTC 57.503 50.000 0.00 0.00 0.00 2.52
5762 8875 2.972625 TGATTCTGTCGGATGGTTGAC 58.027 47.619 0.00 0.00 35.67 3.18
5796 8910 8.662141 GGATTTCAGCAACTCGTAACTTTATAA 58.338 33.333 0.00 0.00 0.00 0.98
5904 9097 7.040271 TGACATTTTCTCATCTTTTGCTGATCA 60.040 33.333 0.00 0.00 0.00 2.92
5914 9107 7.501225 TCATCTTTTGCTGATCATGTATGTCAT 59.499 33.333 0.00 0.00 37.22 3.06
6020 9214 7.925483 GCACTTCATATCTTGACTCAGTTATCT 59.075 37.037 0.00 0.00 32.84 1.98
6070 9279 6.531948 CACGAACGAATTTAAGGAGAAGAGAT 59.468 38.462 0.14 0.00 0.00 2.75
6215 9429 0.888619 CGCCGAGCCCTATCATCTAA 59.111 55.000 0.00 0.00 0.00 2.10
6315 9531 2.791560 CGTGTGAGAGACAACAAGACAG 59.208 50.000 0.00 0.00 35.91 3.51
6333 9558 0.037605 AGCAAAGGAAGCAATGCTGC 60.038 50.000 9.14 6.59 46.66 5.25
6365 9590 7.693969 AAAGGAATGGACAAGAGAGTAAATG 57.306 36.000 0.00 0.00 0.00 2.32
6395 9620 7.771927 ATCATGGTTCATTTCTTCAGTTCTT 57.228 32.000 0.00 0.00 0.00 2.52
6503 9760 3.376234 CCTAGGAAGCAATCACACATGTG 59.624 47.826 24.25 24.25 46.91 3.21
6573 10161 6.198966 CACACAAAAAGCCTTCTTACAACATC 59.801 38.462 0.00 0.00 31.02 3.06
6623 10212 0.764890 ACTTTGGAGCTGCACTGGTA 59.235 50.000 7.72 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.193267 ACAAAATCCCACACATCAATCCG 59.807 43.478 0.00 0.00 0.00 4.18
59 60 7.285172 CAGTCATGTCCCATGTTTATAATCCAA 59.715 37.037 4.30 0.00 0.00 3.53
72 73 1.078214 CACCGCAGTCATGTCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
125 126 4.469657 ACCTGTGTTGGATTGCTCTTAAA 58.530 39.130 0.00 0.00 0.00 1.52
126 127 4.072131 GACCTGTGTTGGATTGCTCTTAA 58.928 43.478 0.00 0.00 0.00 1.85
127 128 3.559171 GGACCTGTGTTGGATTGCTCTTA 60.559 47.826 0.00 0.00 0.00 2.10
128 129 2.508526 GACCTGTGTTGGATTGCTCTT 58.491 47.619 0.00 0.00 0.00 2.85
129 130 1.271597 GGACCTGTGTTGGATTGCTCT 60.272 52.381 0.00 0.00 0.00 4.09
130 131 1.168714 GGACCTGTGTTGGATTGCTC 58.831 55.000 0.00 0.00 0.00 4.26
146 147 0.101939 GATGTAACGAGGACGGGGAC 59.898 60.000 0.00 0.00 44.46 4.46
147 148 1.039233 GGATGTAACGAGGACGGGGA 61.039 60.000 0.00 0.00 44.46 4.81
148 149 1.041447 AGGATGTAACGAGGACGGGG 61.041 60.000 0.00 0.00 44.46 5.73
149 150 0.822164 AAGGATGTAACGAGGACGGG 59.178 55.000 0.00 0.00 44.46 5.28
150 151 2.667473 AAAGGATGTAACGAGGACGG 57.333 50.000 0.00 0.00 44.46 4.79
172 777 3.794028 GTGTGTTTTATGCGCAAAACTCA 59.206 39.130 28.36 27.33 44.86 3.41
173 778 4.041723 AGTGTGTTTTATGCGCAAAACTC 58.958 39.130 28.36 25.68 44.86 3.01
189 794 3.195825 GCTAGGTGAGTATTGGAGTGTGT 59.804 47.826 0.00 0.00 0.00 3.72
190 795 3.430929 GGCTAGGTGAGTATTGGAGTGTG 60.431 52.174 0.00 0.00 0.00 3.82
219 824 2.893637 CATAGAGGTCCGTTGAACAGG 58.106 52.381 0.00 0.00 0.00 4.00
223 828 0.459585 GCGCATAGAGGTCCGTTGAA 60.460 55.000 0.30 0.00 0.00 2.69
226 831 2.499685 GGCGCATAGAGGTCCGTT 59.500 61.111 10.83 0.00 0.00 4.44
242 847 1.839424 GGATCACAGAAAAGTGGGGG 58.161 55.000 0.00 0.00 39.93 5.40
251 856 2.618442 TGCATATGCGGATCACAGAA 57.382 45.000 22.21 0.00 45.83 3.02
262 867 3.350833 CCTATTTCCTCCCTGCATATGC 58.649 50.000 21.09 21.09 42.50 3.14
264 869 2.922283 CCCCTATTTCCTCCCTGCATAT 59.078 50.000 0.00 0.00 0.00 1.78
268 873 1.151679 GCCCCTATTTCCTCCCTGC 59.848 63.158 0.00 0.00 0.00 4.85
271 876 2.155992 GGAGCCCCTATTTCCTCCC 58.844 63.158 0.00 0.00 38.31 4.30
274 879 1.450360 GATGGGAGCCCCTATTTCCT 58.550 55.000 11.10 0.00 45.70 3.36
304 910 3.550974 CGGGGAGTATCACTGGGG 58.449 66.667 0.00 0.00 42.67 4.96
309 915 2.106332 CGTGGCGGGGAGTATCAC 59.894 66.667 0.00 0.00 38.30 3.06
324 930 3.187022 GTCAAAAGCGTATGGTTAACCGT 59.813 43.478 22.67 22.67 39.43 4.83
326 932 3.502979 TGGTCAAAAGCGTATGGTTAACC 59.497 43.478 18.27 18.27 33.97 2.85
330 936 3.686016 AGATGGTCAAAAGCGTATGGTT 58.314 40.909 0.00 0.00 37.42 3.67
339 945 7.161773 ACAAATGGTGATAGATGGTCAAAAG 57.838 36.000 0.00 0.00 0.00 2.27
358 964 2.101640 AAACTCAAGGGGCCACAAAT 57.898 45.000 8.31 0.00 0.00 2.32
361 967 3.625314 AAAAACTCAAGGGGCCACA 57.375 47.368 8.31 0.00 0.00 4.17
377 983 9.114952 GTTTCTTATTTTCCCCATCAACAAAAA 57.885 29.630 0.00 0.00 0.00 1.94
380 986 7.610580 AGTTTCTTATTTTCCCCATCAACAA 57.389 32.000 0.00 0.00 0.00 2.83
382 988 7.363530 GGGTAGTTTCTTATTTTCCCCATCAAC 60.364 40.741 0.00 0.00 0.00 3.18
392 998 6.008331 GTGTGAGGGGGTAGTTTCTTATTTT 58.992 40.000 0.00 0.00 0.00 1.82
402 1008 0.763035 GTGTTGTGTGAGGGGGTAGT 59.237 55.000 0.00 0.00 0.00 2.73
406 1012 2.115266 GGGTGTTGTGTGAGGGGG 59.885 66.667 0.00 0.00 0.00 5.40
407 1013 1.528309 GTGGGTGTTGTGTGAGGGG 60.528 63.158 0.00 0.00 0.00 4.79
411 1066 1.815613 CAAGTTGTGGGTGTTGTGTGA 59.184 47.619 0.00 0.00 0.00 3.58
412 1067 1.815613 TCAAGTTGTGGGTGTTGTGTG 59.184 47.619 2.11 0.00 0.00 3.82
419 1074 1.538047 CCCAGATCAAGTTGTGGGTG 58.462 55.000 17.98 6.21 44.22 4.61
428 1083 7.290061 TCCAACTATATTTTCCCCAGATCAAG 58.710 38.462 0.00 0.00 0.00 3.02
429 1084 7.091993 ACTCCAACTATATTTTCCCCAGATCAA 60.092 37.037 0.00 0.00 0.00 2.57
431 1086 6.842676 ACTCCAACTATATTTTCCCCAGATC 58.157 40.000 0.00 0.00 0.00 2.75
432 1087 6.848562 ACTCCAACTATATTTTCCCCAGAT 57.151 37.500 0.00 0.00 0.00 2.90
434 1089 5.067805 GCAACTCCAACTATATTTTCCCCAG 59.932 44.000 0.00 0.00 0.00 4.45
435 1090 4.953579 GCAACTCCAACTATATTTTCCCCA 59.046 41.667 0.00 0.00 0.00 4.96
436 1091 5.201243 AGCAACTCCAACTATATTTTCCCC 58.799 41.667 0.00 0.00 0.00 4.81
558 1227 0.598065 GCTGAAAAATGCGGACCACT 59.402 50.000 0.00 0.00 0.00 4.00
559 1228 0.598065 AGCTGAAAAATGCGGACCAC 59.402 50.000 0.00 0.00 0.00 4.16
565 1234 4.410492 AAGACTACAGCTGAAAAATGCG 57.590 40.909 23.35 1.56 0.00 4.73
570 1239 8.621532 ATGTATTCAAAGACTACAGCTGAAAA 57.378 30.769 23.35 4.27 32.74 2.29
574 1243 7.601073 TTGATGTATTCAAAGACTACAGCTG 57.399 36.000 13.48 13.48 41.38 4.24
601 1271 7.651704 CGGTTAGTTGGAAAGAATGAACATTTT 59.348 33.333 1.56 0.00 0.00 1.82
621 1291 2.096496 ACGAGTCGTATGAACCGGTTAG 59.904 50.000 22.33 9.67 38.73 2.34
624 1294 0.169672 CACGAGTCGTATGAACCGGT 59.830 55.000 19.43 0.00 38.32 5.28
625 1295 0.448990 TCACGAGTCGTATGAACCGG 59.551 55.000 19.43 0.00 38.32 5.28
626 1296 2.251869 TTCACGAGTCGTATGAACCG 57.748 50.000 19.43 4.10 38.32 4.44
627 1297 4.201685 CCATTTTCACGAGTCGTATGAACC 60.202 45.833 19.43 0.00 38.32 3.62
636 1306 5.997385 ACATTTGTACCATTTTCACGAGTC 58.003 37.500 0.00 0.00 0.00 3.36
641 1311 7.546778 ACCAAAACATTTGTACCATTTTCAC 57.453 32.000 2.53 0.00 0.00 3.18
672 1350 4.752661 TGGCAACGGTTTTATCACTAAC 57.247 40.909 0.00 0.00 42.51 2.34
719 1397 8.303156 TCACTAATTCATAACCCATTTGTGTTG 58.697 33.333 0.00 0.00 36.02 3.33
724 1402 6.461509 GGCCTCACTAATTCATAACCCATTTG 60.462 42.308 0.00 0.00 0.00 2.32
733 1411 9.555727 GTTTTATGTAGGCCTCACTAATTCATA 57.444 33.333 9.68 4.36 0.00 2.15
735 1413 7.630082 AGTTTTATGTAGGCCTCACTAATTCA 58.370 34.615 9.68 0.00 0.00 2.57
736 1414 9.043079 GTAGTTTTATGTAGGCCTCACTAATTC 57.957 37.037 9.68 0.00 0.00 2.17
739 1417 7.484993 TGTAGTTTTATGTAGGCCTCACTAA 57.515 36.000 9.68 2.24 0.00 2.24
741 1419 6.368779 TTGTAGTTTTATGTAGGCCTCACT 57.631 37.500 9.68 3.81 0.00 3.41
742 1420 7.389607 TCTTTTGTAGTTTTATGTAGGCCTCAC 59.610 37.037 9.68 7.00 0.00 3.51
743 1421 7.389607 GTCTTTTGTAGTTTTATGTAGGCCTCA 59.610 37.037 9.68 8.11 0.00 3.86
744 1422 7.389607 TGTCTTTTGTAGTTTTATGTAGGCCTC 59.610 37.037 9.68 1.02 0.00 4.70
745 1423 7.228590 TGTCTTTTGTAGTTTTATGTAGGCCT 58.771 34.615 11.78 11.78 0.00 5.19
746 1424 7.443259 TGTCTTTTGTAGTTTTATGTAGGCC 57.557 36.000 0.00 0.00 0.00 5.19
747 1425 9.908152 AAATGTCTTTTGTAGTTTTATGTAGGC 57.092 29.630 0.00 0.00 0.00 3.93
751 1429 9.887406 CGGTAAATGTCTTTTGTAGTTTTATGT 57.113 29.630 0.00 0.00 0.00 2.29
752 1430 9.887406 ACGGTAAATGTCTTTTGTAGTTTTATG 57.113 29.630 0.00 0.00 0.00 1.90
753 1431 9.887406 CACGGTAAATGTCTTTTGTAGTTTTAT 57.113 29.630 0.00 0.00 0.00 1.40
754 1432 8.344098 CCACGGTAAATGTCTTTTGTAGTTTTA 58.656 33.333 0.00 0.00 0.00 1.52
755 1433 7.067251 TCCACGGTAAATGTCTTTTGTAGTTTT 59.933 33.333 0.00 0.00 0.00 2.43
756 1434 6.543100 TCCACGGTAAATGTCTTTTGTAGTTT 59.457 34.615 0.00 0.00 0.00 2.66
757 1435 6.017687 GTCCACGGTAAATGTCTTTTGTAGTT 60.018 38.462 0.00 0.00 0.00 2.24
758 1436 5.467735 GTCCACGGTAAATGTCTTTTGTAGT 59.532 40.000 0.00 0.00 0.00 2.73
759 1437 5.467399 TGTCCACGGTAAATGTCTTTTGTAG 59.533 40.000 0.00 0.00 0.00 2.74
760 1438 5.366460 TGTCCACGGTAAATGTCTTTTGTA 58.634 37.500 0.00 0.00 0.00 2.41
761 1439 4.200874 TGTCCACGGTAAATGTCTTTTGT 58.799 39.130 0.00 0.00 0.00 2.83
762 1440 4.822036 TGTCCACGGTAAATGTCTTTTG 57.178 40.909 0.00 0.00 0.00 2.44
935 1628 7.825331 TGGGCTGTACTCTATCTATATATGC 57.175 40.000 0.00 0.00 0.00 3.14
936 1629 8.855110 CCTTGGGCTGTACTCTATCTATATATG 58.145 40.741 0.00 0.00 0.00 1.78
940 1633 5.580998 CCCTTGGGCTGTACTCTATCTATA 58.419 45.833 0.00 0.00 0.00 1.31
944 1637 1.070914 GCCCTTGGGCTGTACTCTATC 59.929 57.143 22.47 0.00 0.00 2.08
960 1653 3.391382 CCGACGGGAGAAAGCCCT 61.391 66.667 5.81 0.00 46.44 5.19
971 1665 2.105128 GAGCAGATGGACCGACGG 59.895 66.667 13.61 13.61 0.00 4.79
1006 1700 3.882444 CCATGGCTTCAGAGAAAGATGA 58.118 45.455 0.00 0.00 0.00 2.92
1353 2129 1.079750 GTCCTCCAGGAGCGTGAAC 60.080 63.158 11.57 0.15 46.49 3.18
1394 2170 1.202879 GCCAATGATCCCCGATGGTAA 60.203 52.381 0.00 0.00 33.63 2.85
1399 2175 1.763770 GGAGCCAATGATCCCCGAT 59.236 57.895 0.00 0.00 41.39 4.18
1421 2197 1.968704 TGCATCTCGACCTATCTCGT 58.031 50.000 0.00 0.00 35.10 4.18
1425 2201 1.674221 GGCCATGCATCTCGACCTATC 60.674 57.143 0.00 0.00 0.00 2.08
1457 2236 2.223180 ACGTTTGAAAGACGCAACCTTC 60.223 45.455 0.00 0.00 43.92 3.46
1466 2245 3.701241 TGCAATTCCACGTTTGAAAGAC 58.299 40.909 1.93 0.00 0.00 3.01
1473 2252 1.537990 GCCAGTTGCAATTCCACGTTT 60.538 47.619 0.59 0.00 40.77 3.60
1475 2254 1.659794 GCCAGTTGCAATTCCACGT 59.340 52.632 0.59 0.00 40.77 4.49
1486 2268 1.144565 CTCGCGAGATCTGCCAGTTG 61.145 60.000 32.06 0.00 40.84 3.16
1488 2270 2.804167 CTCGCGAGATCTGCCAGT 59.196 61.111 32.06 0.00 40.84 4.00
1492 2274 2.959071 GTGGCTCGCGAGATCTGC 60.959 66.667 38.74 23.64 40.84 4.26
1500 2282 3.561213 CTGCTGATGTGGCTCGCG 61.561 66.667 0.00 0.00 0.00 5.87
1542 2324 2.506881 CATTTTTCCAGCCGCGCC 60.507 61.111 0.00 0.00 0.00 6.53
1544 2326 1.802715 CAGCATTTTTCCAGCCGCG 60.803 57.895 0.00 0.00 0.00 6.46
1547 2329 1.620323 AGAACCAGCATTTTTCCAGCC 59.380 47.619 0.00 0.00 0.00 4.85
1602 2384 1.149148 GGACGACCAGTTTCTTGAGC 58.851 55.000 0.00 0.00 35.97 4.26
1701 2495 1.911357 ACAATGTGATGGAGCTCCTCA 59.089 47.619 32.28 27.04 36.82 3.86
1725 2519 1.022451 CGGTATGTGGTTCGGTTGGG 61.022 60.000 0.00 0.00 0.00 4.12
1726 2520 0.320946 ACGGTATGTGGTTCGGTTGG 60.321 55.000 0.00 0.00 0.00 3.77
1786 2580 0.174389 CTGGTCATCACGTCCTCCTG 59.826 60.000 0.00 0.00 0.00 3.86
1789 2583 2.159226 CCTAACTGGTCATCACGTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
1800 2595 1.745653 GCCAAGAATGCCTAACTGGTC 59.254 52.381 0.00 0.00 38.35 4.02
1805 2600 1.062525 CGCGCCAAGAATGCCTAAC 59.937 57.895 0.00 0.00 0.00 2.34
1849 2644 0.452122 CGTGACCGCAAAATTCGACC 60.452 55.000 0.00 0.00 0.00 4.79
1854 2649 1.948145 TGTTACCGTGACCGCAAAATT 59.052 42.857 0.00 0.00 0.00 1.82
2350 3148 9.640952 TCTTTGAATTCTCCCGGATAAATTAAT 57.359 29.630 0.73 0.00 0.00 1.40
2361 3159 8.243426 TCATTTTGTTATCTTTGAATTCTCCCG 58.757 33.333 7.05 0.00 0.00 5.14
2420 3218 6.263412 AGATTCTCATGACCCTCATTGAAT 57.737 37.500 0.00 0.00 38.75 2.57
2430 3228 5.596361 TGAGTAGAGGAAGATTCTCATGACC 59.404 44.000 0.00 0.00 33.92 4.02
2460 3258 3.459969 AGGAACAAGGTTCTCAGGTTCTT 59.540 43.478 8.79 0.00 38.27 2.52
2485 3283 0.806102 ATCGCTGATACGGCACACAC 60.806 55.000 0.00 0.00 35.10 3.82
2488 3286 0.527600 GTCATCGCTGATACGGCACA 60.528 55.000 0.00 0.00 35.10 4.57
2519 3317 2.371841 TGAGTTCCACAGGTATTGCTGT 59.628 45.455 0.00 0.00 0.00 4.40
2532 3330 1.347707 CTGCAGGTTAGGTGAGTTCCA 59.652 52.381 5.57 0.00 0.00 3.53
2561 3359 1.807981 CACCTTGCAATGGCGCATG 60.808 57.895 10.83 6.19 45.35 4.06
2562 3360 2.574929 CACCTTGCAATGGCGCAT 59.425 55.556 10.83 0.00 45.35 4.73
2598 3399 9.017669 GTGTTGAGTAGTTATGGTAATAGTTCG 57.982 37.037 0.00 0.00 0.00 3.95
2644 3449 1.068474 GTTGAACAGCGCATACGAGT 58.932 50.000 11.47 0.00 43.93 4.18
2647 3452 0.095245 CCTGTTGAACAGCGCATACG 59.905 55.000 19.45 0.62 44.63 3.06
2648 3453 1.128692 GACCTGTTGAACAGCGCATAC 59.871 52.381 19.45 3.47 44.63 2.39
2649 3454 1.001974 AGACCTGTTGAACAGCGCATA 59.998 47.619 19.45 0.00 44.63 3.14
2650 3455 0.250467 AGACCTGTTGAACAGCGCAT 60.250 50.000 19.45 4.73 44.63 4.73
2652 3457 0.040958 CAAGACCTGTTGAACAGCGC 60.041 55.000 19.45 12.70 44.63 5.92
2653 3458 0.588252 CCAAGACCTGTTGAACAGCG 59.412 55.000 19.45 14.54 44.63 5.18
2710 3516 5.158141 TGCTCCAGGTCCTTAGAATATGAT 58.842 41.667 2.63 0.00 0.00 2.45
2730 3536 2.626743 AGCTTCTTGCACTTGAAATGCT 59.373 40.909 0.00 0.00 45.94 3.79
2879 3703 9.521503 TCTTCTAATCGATAATTCAGTGAGTTG 57.478 33.333 10.90 0.00 0.00 3.16
2978 3812 8.543862 ACTAATAAAAAGGTAAACGGACAGAG 57.456 34.615 0.00 0.00 0.00 3.35
3006 3843 6.072008 TGCAATATATATTTGCACTTGCCGAT 60.072 34.615 21.27 0.00 41.18 4.18
3013 3850 6.262049 TGGTTCGTGCAATATATATTTGCACT 59.738 34.615 33.27 8.26 42.14 4.40
3139 3987 7.041167 CGATCCAACAATCTAATAAATCCAGCA 60.041 37.037 0.00 0.00 0.00 4.41
3141 3989 8.383318 ACGATCCAACAATCTAATAAATCCAG 57.617 34.615 0.00 0.00 0.00 3.86
3143 3992 9.450807 CAAACGATCCAACAATCTAATAAATCC 57.549 33.333 0.00 0.00 0.00 3.01
3152 4001 3.189287 GCACTCAAACGATCCAACAATCT 59.811 43.478 0.00 0.00 0.00 2.40
3171 4021 2.092211 CAGAAGTTACGATTCGGTGCAC 59.908 50.000 8.80 8.80 0.00 4.57
3173 4023 2.092211 CACAGAAGTTACGATTCGGTGC 59.908 50.000 11.29 0.00 42.80 5.01
3180 4030 6.090898 GTCTACAATTGCACAGAAGTTACGAT 59.909 38.462 5.05 0.00 0.00 3.73
3192 4042 5.215160 CAAGAACCAAGTCTACAATTGCAC 58.785 41.667 5.05 0.00 0.00 4.57
3196 4046 6.126409 TCAACCAAGAACCAAGTCTACAATT 58.874 36.000 0.00 0.00 0.00 2.32
3198 4058 5.105567 TCAACCAAGAACCAAGTCTACAA 57.894 39.130 0.00 0.00 0.00 2.41
3207 4067 4.099266 CACTTCCAATTCAACCAAGAACCA 59.901 41.667 0.00 0.00 0.00 3.67
3222 4082 5.127194 ACGATGCTATAGAAGACACTTCCAA 59.873 40.000 3.21 0.00 0.00 3.53
3264 4136 7.464358 ACGAAGAAAATGTTATCCGAAATGAG 58.536 34.615 0.00 0.00 0.00 2.90
3271 4143 6.642683 ACACTACGAAGAAAATGTTATCCG 57.357 37.500 0.00 0.00 0.00 4.18
3316 4198 0.601558 TAGGTGGACAACAGTCTCGC 59.398 55.000 0.00 0.00 32.81 5.03
3317 4199 1.887198 ACTAGGTGGACAACAGTCTCG 59.113 52.381 0.00 0.00 32.81 4.04
3379 4266 7.070447 TCTGAATGTAGCTAGAGACAATGGATT 59.930 37.037 0.00 0.00 0.00 3.01
3385 4272 9.809096 CTAATTTCTGAATGTAGCTAGAGACAA 57.191 33.333 0.00 0.00 0.00 3.18
3497 4388 2.674357 GTGCCAACATGCATTTTCCATC 59.326 45.455 0.00 0.00 44.30 3.51
3537 4428 1.480954 GAGTGTCGTACATGATGGGGT 59.519 52.381 0.00 0.00 0.00 4.95
3547 6158 1.058404 GTTGCCTTCGAGTGTCGTAC 58.942 55.000 0.00 0.00 41.35 3.67
3590 6205 2.047655 GGGCGACATTGACGGTCA 60.048 61.111 6.76 6.76 34.97 4.02
3626 6241 4.127171 GCCTTGTTGTCTCTCACAAGTTA 58.873 43.478 10.34 0.00 46.07 2.24
3674 6303 9.249053 TGGTTATGTGCTTTTATTCTCCATTTA 57.751 29.630 0.00 0.00 0.00 1.40
3682 6311 9.585099 TCATGATTTGGTTATGTGCTTTTATTC 57.415 29.630 0.00 0.00 0.00 1.75
3685 6314 9.585099 GAATCATGATTTGGTTATGTGCTTTTA 57.415 29.630 21.57 0.00 0.00 1.52
3766 6433 2.579860 AGGGACAGAATTGGAGAAGCAT 59.420 45.455 0.00 0.00 0.00 3.79
3769 6436 3.262915 AGTGAGGGACAGAATTGGAGAAG 59.737 47.826 0.00 0.00 0.00 2.85
3782 6449 4.525100 AGTAGAAGAGAAACAGTGAGGGAC 59.475 45.833 0.00 0.00 0.00 4.46
3860 6531 7.823310 ACATAAGATTAAATTTGCCATGTTGCA 59.177 29.630 0.00 0.00 40.07 4.08
3861 6532 8.200364 ACATAAGATTAAATTTGCCATGTTGC 57.800 30.769 0.00 0.00 0.00 4.17
3864 6535 9.816354 GGTTACATAAGATTAAATTTGCCATGT 57.184 29.630 0.00 4.82 0.00 3.21
3865 6536 9.814899 TGGTTACATAAGATTAAATTTGCCATG 57.185 29.630 0.00 0.00 0.00 3.66
3867 6538 9.814899 CATGGTTACATAAGATTAAATTTGCCA 57.185 29.630 0.00 0.00 34.99 4.92
3868 6539 8.764287 GCATGGTTACATAAGATTAAATTTGCC 58.236 33.333 0.00 0.00 34.99 4.52
3869 6540 9.311916 TGCATGGTTACATAAGATTAAATTTGC 57.688 29.630 0.00 0.00 34.99 3.68
3887 6558 8.140628 GGGTTCAAAAATTAAATTTGCATGGTT 58.859 29.630 0.00 0.00 37.62 3.67
3888 6559 7.505248 AGGGTTCAAAAATTAAATTTGCATGGT 59.495 29.630 0.00 0.00 37.62 3.55
3889 6560 7.884257 AGGGTTCAAAAATTAAATTTGCATGG 58.116 30.769 0.00 0.00 37.62 3.66
3892 6563 8.841300 GGTAAGGGTTCAAAAATTAAATTTGCA 58.159 29.630 0.00 0.00 37.62 4.08
3893 6564 9.062524 AGGTAAGGGTTCAAAAATTAAATTTGC 57.937 29.630 0.00 1.42 37.62 3.68
3922 6593 7.039434 TCCATGGTAATTGTCATAGCACAAAAA 60.039 33.333 12.58 0.00 39.69 1.94
3923 6594 6.435591 TCCATGGTAATTGTCATAGCACAAAA 59.564 34.615 12.58 0.00 39.69 2.44
3924 6595 5.948758 TCCATGGTAATTGTCATAGCACAAA 59.051 36.000 12.58 0.00 39.69 2.83
3925 6596 5.504853 TCCATGGTAATTGTCATAGCACAA 58.495 37.500 12.58 0.00 40.54 3.33
3926 6597 5.109500 TCCATGGTAATTGTCATAGCACA 57.891 39.130 12.58 0.00 33.99 4.57
3927 6598 6.449635 TTTCCATGGTAATTGTCATAGCAC 57.550 37.500 12.58 0.00 33.99 4.40
3928 6599 7.658525 ATTTTCCATGGTAATTGTCATAGCA 57.341 32.000 12.58 0.00 35.47 3.49
3929 6600 8.416329 AGAATTTTCCATGGTAATTGTCATAGC 58.584 33.333 23.23 12.37 0.00 2.97
3957 6628 7.177392 CCAAAATAATTAACCATGGGGCAAAAA 59.823 33.333 18.09 1.02 37.90 1.94
3958 6629 6.660949 CCAAAATAATTAACCATGGGGCAAAA 59.339 34.615 18.09 2.87 37.90 2.44
3959 6630 6.183347 CCAAAATAATTAACCATGGGGCAAA 58.817 36.000 18.09 4.75 37.90 3.68
3960 6631 5.339530 CCCAAAATAATTAACCATGGGGCAA 60.340 40.000 18.09 7.05 41.86 4.52
3961 6632 4.164988 CCCAAAATAATTAACCATGGGGCA 59.835 41.667 18.09 0.00 41.86 5.36
3962 6633 4.410555 TCCCAAAATAATTAACCATGGGGC 59.589 41.667 18.09 0.00 44.91 5.80
3963 6634 6.069963 TGTTCCCAAAATAATTAACCATGGGG 60.070 38.462 18.09 13.14 44.91 4.96
3964 6635 6.951971 TGTTCCCAAAATAATTAACCATGGG 58.048 36.000 18.09 16.91 45.94 4.00
3965 6636 8.891720 CAATGTTCCCAAAATAATTAACCATGG 58.108 33.333 11.19 11.19 0.00 3.66
3966 6637 8.397148 GCAATGTTCCCAAAATAATTAACCATG 58.603 33.333 0.00 0.00 0.00 3.66
3967 6638 8.105829 TGCAATGTTCCCAAAATAATTAACCAT 58.894 29.630 0.00 0.00 0.00 3.55
3968 6639 7.389053 GTGCAATGTTCCCAAAATAATTAACCA 59.611 33.333 0.00 0.00 0.00 3.67
3969 6640 7.389053 TGTGCAATGTTCCCAAAATAATTAACC 59.611 33.333 0.00 0.00 0.00 2.85
3970 6641 8.316640 TGTGCAATGTTCCCAAAATAATTAAC 57.683 30.769 0.00 0.00 0.00 2.01
3971 6642 9.512588 AATGTGCAATGTTCCCAAAATAATTAA 57.487 25.926 0.00 0.00 0.00 1.40
3972 6643 9.512588 AAATGTGCAATGTTCCCAAAATAATTA 57.487 25.926 0.00 0.00 0.00 1.40
3973 6644 7.999450 AATGTGCAATGTTCCCAAAATAATT 57.001 28.000 0.00 0.00 0.00 1.40
3974 6645 7.999450 AAATGTGCAATGTTCCCAAAATAAT 57.001 28.000 0.00 0.00 0.00 1.28
3975 6646 7.040823 GGAAAATGTGCAATGTTCCCAAAATAA 60.041 33.333 14.96 0.00 33.10 1.40
3976 6647 6.429385 GGAAAATGTGCAATGTTCCCAAAATA 59.571 34.615 14.96 0.00 33.10 1.40
3977 6648 5.241285 GGAAAATGTGCAATGTTCCCAAAAT 59.759 36.000 14.96 0.00 33.10 1.82
3978 6649 4.578105 GGAAAATGTGCAATGTTCCCAAAA 59.422 37.500 14.96 0.00 33.10 2.44
3979 6650 4.133078 GGAAAATGTGCAATGTTCCCAAA 58.867 39.130 14.96 0.00 33.10 3.28
3980 6651 3.737850 GGAAAATGTGCAATGTTCCCAA 58.262 40.909 14.96 0.00 33.10 4.12
3981 6652 3.399440 GGAAAATGTGCAATGTTCCCA 57.601 42.857 14.96 0.00 33.10 4.37
3983 6654 2.336667 CGGGAAAATGTGCAATGTTCC 58.663 47.619 16.53 16.53 37.59 3.62
3984 6655 1.726248 GCGGGAAAATGTGCAATGTTC 59.274 47.619 0.00 0.00 0.00 3.18
3985 6656 1.794512 GCGGGAAAATGTGCAATGTT 58.205 45.000 0.00 0.00 0.00 2.71
3986 6657 0.388391 CGCGGGAAAATGTGCAATGT 60.388 50.000 0.00 0.00 0.00 2.71
3987 6658 1.685640 GCGCGGGAAAATGTGCAATG 61.686 55.000 8.83 0.00 41.13 2.82
3988 6659 1.445926 GCGCGGGAAAATGTGCAAT 60.446 52.632 8.83 0.00 41.13 3.56
3989 6660 2.049618 GCGCGGGAAAATGTGCAA 60.050 55.556 8.83 0.00 41.13 4.08
3990 6661 4.397090 CGCGCGGGAAAATGTGCA 62.397 61.111 24.84 0.00 41.53 4.57
3992 6663 4.101790 AGCGCGCGGGAAAATGTG 62.102 61.111 33.06 0.00 0.00 3.21
3993 6664 4.101790 CAGCGCGCGGGAAAATGT 62.102 61.111 33.06 0.57 0.00 2.71
3994 6665 3.609214 AACAGCGCGCGGGAAAATG 62.609 57.895 33.28 22.59 0.00 2.32
3995 6666 3.361977 AACAGCGCGCGGGAAAAT 61.362 55.556 33.28 10.92 0.00 1.82
3996 6667 4.320928 CAACAGCGCGCGGGAAAA 62.321 61.111 33.28 0.00 0.00 2.29
4005 6676 2.671619 TAGTTGGCCCAACAGCGC 60.672 61.111 27.49 0.00 45.66 5.92
4006 6677 0.889186 AACTAGTTGGCCCAACAGCG 60.889 55.000 27.49 16.77 45.66 5.18
4007 6678 0.881796 GAACTAGTTGGCCCAACAGC 59.118 55.000 27.49 8.61 45.66 4.40
4008 6679 2.270352 TGAACTAGTTGGCCCAACAG 57.730 50.000 27.49 22.30 45.66 3.16
4009 6680 2.738587 TTGAACTAGTTGGCCCAACA 57.261 45.000 27.49 12.97 45.66 3.33
4010 6681 3.056821 GGAATTGAACTAGTTGGCCCAAC 60.057 47.826 19.12 19.12 43.83 3.77
4011 6682 3.161866 GGAATTGAACTAGTTGGCCCAA 58.838 45.455 14.14 11.15 0.00 4.12
4012 6683 2.109128 TGGAATTGAACTAGTTGGCCCA 59.891 45.455 14.14 9.83 0.00 5.36
4013 6684 2.492088 GTGGAATTGAACTAGTTGGCCC 59.508 50.000 14.14 7.41 0.00 5.80
4014 6685 3.421844 AGTGGAATTGAACTAGTTGGCC 58.578 45.455 14.14 7.28 0.00 5.36
4015 6686 3.125316 CGAGTGGAATTGAACTAGTTGGC 59.875 47.826 14.14 0.00 0.00 4.52
4016 6687 3.684788 CCGAGTGGAATTGAACTAGTTGG 59.315 47.826 14.14 0.00 37.49 3.77
4017 6688 3.684788 CCCGAGTGGAATTGAACTAGTTG 59.315 47.826 14.14 0.00 37.49 3.16
4018 6689 3.307480 CCCCGAGTGGAATTGAACTAGTT 60.307 47.826 8.13 8.13 37.49 2.24
4019 6690 2.236395 CCCCGAGTGGAATTGAACTAGT 59.764 50.000 0.00 0.00 37.49 2.57
4020 6691 2.420129 CCCCCGAGTGGAATTGAACTAG 60.420 54.545 0.00 0.00 37.49 2.57
4021 6692 1.557832 CCCCCGAGTGGAATTGAACTA 59.442 52.381 0.00 0.00 37.49 2.24
4022 6693 0.328258 CCCCCGAGTGGAATTGAACT 59.672 55.000 0.00 0.00 37.49 3.01
4023 6694 2.868253 CCCCCGAGTGGAATTGAAC 58.132 57.895 0.00 0.00 37.49 3.18
4038 6709 3.181447 GGCTTACTTATTACTGGACCCCC 60.181 52.174 0.00 0.00 0.00 5.40
4039 6710 3.181447 GGGCTTACTTATTACTGGACCCC 60.181 52.174 0.00 0.00 0.00 4.95
4040 6711 3.457012 TGGGCTTACTTATTACTGGACCC 59.543 47.826 0.00 0.00 0.00 4.46
4041 6712 4.765813 TGGGCTTACTTATTACTGGACC 57.234 45.455 0.00 0.00 0.00 4.46
4042 6713 6.935208 CCTAATGGGCTTACTTATTACTGGAC 59.065 42.308 0.00 0.00 0.00 4.02
4043 6714 6.847567 TCCTAATGGGCTTACTTATTACTGGA 59.152 38.462 0.00 0.00 34.39 3.86
4044 6715 7.074653 TCCTAATGGGCTTACTTATTACTGG 57.925 40.000 0.00 0.00 34.39 4.00
4045 6716 9.003658 CATTCCTAATGGGCTTACTTATTACTG 57.996 37.037 0.00 0.00 35.23 2.74
4061 6732 5.394802 CGACGAGAGATACCATTCCTAATG 58.605 45.833 0.00 0.00 38.63 1.90
4062 6733 4.459685 CCGACGAGAGATACCATTCCTAAT 59.540 45.833 0.00 0.00 0.00 1.73
4063 6734 3.819337 CCGACGAGAGATACCATTCCTAA 59.181 47.826 0.00 0.00 0.00 2.69
4064 6735 3.181447 ACCGACGAGAGATACCATTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
4065 6736 2.231529 CCGACGAGAGATACCATTCCT 58.768 52.381 0.00 0.00 0.00 3.36
4066 6737 1.955080 ACCGACGAGAGATACCATTCC 59.045 52.381 0.00 0.00 0.00 3.01
4067 6738 2.879646 AGACCGACGAGAGATACCATTC 59.120 50.000 0.00 0.00 0.00 2.67
4068 6739 2.933573 AGACCGACGAGAGATACCATT 58.066 47.619 0.00 0.00 0.00 3.16
4069 6740 2.642154 AGACCGACGAGAGATACCAT 57.358 50.000 0.00 0.00 0.00 3.55
4070 6741 2.414994 AAGACCGACGAGAGATACCA 57.585 50.000 0.00 0.00 0.00 3.25
4071 6742 2.944349 AGAAAGACCGACGAGAGATACC 59.056 50.000 0.00 0.00 0.00 2.73
4072 6743 3.002553 GGAGAAAGACCGACGAGAGATAC 59.997 52.174 0.00 0.00 0.00 2.24
4073 6744 3.118334 AGGAGAAAGACCGACGAGAGATA 60.118 47.826 0.00 0.00 0.00 1.98
4074 6745 2.018515 GGAGAAAGACCGACGAGAGAT 58.981 52.381 0.00 0.00 0.00 2.75
4081 6752 0.246910 GGGTGAGGAGAAAGACCGAC 59.753 60.000 0.00 0.00 0.00 4.79
4084 6755 1.900545 CGGGGGTGAGGAGAAAGACC 61.901 65.000 0.00 0.00 0.00 3.85
4088 6759 0.909623 GATTCGGGGGTGAGGAGAAA 59.090 55.000 0.00 0.00 0.00 2.52
4091 6762 0.912486 AAAGATTCGGGGGTGAGGAG 59.088 55.000 0.00 0.00 0.00 3.69
4099 6770 1.279271 ACTGTGGAGAAAGATTCGGGG 59.721 52.381 0.00 0.00 34.02 5.73
4140 6815 1.066858 ACGACTAATCTGCTGGGTGTG 60.067 52.381 0.00 0.00 0.00 3.82
4168 6843 3.309436 ATTGCTGCGCCACGTAGGA 62.309 57.895 4.18 1.08 39.78 2.94
4175 6851 2.033911 TTCTGGATTGCTGCGCCA 59.966 55.556 4.18 8.15 0.00 5.69
4176 6852 2.262471 CTGTTCTGGATTGCTGCGCC 62.262 60.000 4.18 0.00 0.00 6.53
4195 6871 0.099436 GTGGATTCAAGCATGTCGGC 59.901 55.000 0.00 0.00 0.00 5.54
4244 6920 2.126071 CGCCGTCGTCTTCATGGT 60.126 61.111 0.00 0.00 0.00 3.55
4250 6926 2.126071 CATCACCGCCGTCGTCTT 60.126 61.111 0.00 0.00 0.00 3.01
4325 7007 3.630013 TCTGCTGCGCCTTGAGGT 61.630 61.111 4.18 0.00 37.57 3.85
4418 7100 3.406361 GGACAGCACGCACGTCTG 61.406 66.667 15.95 15.95 33.08 3.51
4419 7101 3.911698 TGGACAGCACGCACGTCT 61.912 61.111 10.30 0.00 0.00 4.18
4428 7110 1.433053 CGTCAAAACCGTGGACAGCA 61.433 55.000 0.00 0.00 0.00 4.41
4433 7115 1.153127 AAGCCGTCAAAACCGTGGA 60.153 52.632 0.00 0.00 0.00 4.02
4434 7116 1.281656 GAAGCCGTCAAAACCGTGG 59.718 57.895 0.00 0.00 0.00 4.94
4435 7117 0.316689 GTGAAGCCGTCAAAACCGTG 60.317 55.000 0.00 0.00 38.23 4.94
4436 7118 1.768112 CGTGAAGCCGTCAAAACCGT 61.768 55.000 0.00 0.00 38.23 4.83
4439 7121 1.370051 GCCGTGAAGCCGTCAAAAC 60.370 57.895 0.00 0.00 38.23 2.43
4471 7159 2.456119 GGCTCGTGAAGTCATGGCG 61.456 63.158 0.00 0.00 33.09 5.69
4546 7252 4.142359 CCATGTATCTCTACCTATGTCGCC 60.142 50.000 0.00 0.00 0.00 5.54
4574 7283 0.827507 ATGCAACCTTTTGAGCCCGT 60.828 50.000 0.00 0.00 34.24 5.28
4576 7285 1.067354 CAGATGCAACCTTTTGAGCCC 60.067 52.381 0.00 0.00 34.24 5.19
4596 7305 3.842925 TTGCAACTCCAGGCCGGAC 62.843 63.158 5.05 0.00 39.64 4.79
4606 7315 4.164294 GCAAGATCATTCAGTTGCAACTC 58.836 43.478 28.97 15.93 43.86 3.01
4698 7759 5.512060 GGAGATGATCTTAGCATTGCTGGTA 60.512 44.000 21.31 6.29 40.10 3.25
5014 8079 3.129988 GGGTGCCAATCAAGAAGAAGATG 59.870 47.826 0.00 0.00 0.00 2.90
5031 8107 3.816994 ACCGAATAAATAGAAGGGGTGC 58.183 45.455 0.00 0.00 0.00 5.01
5032 8108 5.449999 GCAAACCGAATAAATAGAAGGGGTG 60.450 44.000 0.00 0.00 0.00 4.61
5141 8217 3.806380 CAAGATCCTCATGACTCCCAAG 58.194 50.000 0.00 0.00 0.00 3.61
5162 8238 5.008613 TCAGGTTGTCAAACTTGAATACAGC 59.991 40.000 0.00 0.00 46.07 4.40
5179 8255 4.336433 TCAAGAGAAAAGCTTGTCAGGTTG 59.664 41.667 18.89 16.51 39.96 3.77
5257 8333 0.615331 TGAGCTTCTGCAGGTTAGGG 59.385 55.000 15.13 0.00 42.74 3.53
5324 8404 2.676342 ACGGAATGTTTCGAGTTATGGC 59.324 45.455 0.00 0.00 0.00 4.40
5388 8484 5.073144 ACCTCCTTTGTAGACTGGAAATTCA 59.927 40.000 0.00 0.00 0.00 2.57
5390 8486 5.073144 TCACCTCCTTTGTAGACTGGAAATT 59.927 40.000 0.00 0.00 0.00 1.82
5398 8494 4.389077 CGTTTCATCACCTCCTTTGTAGAC 59.611 45.833 0.00 0.00 0.00 2.59
5567 8663 4.377841 CCTCTTGAGCGAAATGAGTTTGAC 60.378 45.833 0.00 0.00 0.00 3.18
5602 8698 1.349688 TCGGCCATAGTGAGTTTGGTT 59.650 47.619 2.24 0.00 32.90 3.67
5606 8705 5.128827 TCTTCTAATCGGCCATAGTGAGTTT 59.871 40.000 2.24 0.00 0.00 2.66
5617 8717 2.877043 TACGGTTCTTCTAATCGGCC 57.123 50.000 0.00 0.00 0.00 6.13
5619 8719 3.057734 GCCATACGGTTCTTCTAATCGG 58.942 50.000 0.00 0.00 33.28 4.18
5747 8860 2.426522 ACAATGTCAACCATCCGACAG 58.573 47.619 0.00 0.00 44.83 3.51
5762 8875 4.383649 CGAGTTGCTGAAATCCAAACAATG 59.616 41.667 0.00 0.00 0.00 2.82
5796 8910 6.952358 TCAACCAAGAACCTAGTCTACACTAT 59.048 38.462 0.00 0.00 34.44 2.12
5904 9097 3.954258 TCAGAGGTGTCGATGACATACAT 59.046 43.478 2.62 0.00 44.63 2.29
5914 9107 2.879026 CGGATAATCTCAGAGGTGTCGA 59.121 50.000 0.00 0.00 0.00 4.20
5989 9183 7.493971 ACTGAGTCAAGATATGAAGTGCATAAC 59.506 37.037 0.00 0.00 42.45 1.89
6020 9214 3.755112 TGAATGTTGTTGGAGACGGTA 57.245 42.857 0.00 0.00 0.00 4.02
6215 9429 5.182380 TCGAAGGTGTTTTCTTCAAGTGTTT 59.818 36.000 0.00 0.00 40.27 2.83
6315 9531 2.452767 GCAGCATTGCTTCCTTTGC 58.547 52.632 8.83 5.46 46.95 3.68
6333 9558 1.339610 TGTCCATTCCTTTTTGGCACG 59.660 47.619 0.00 0.00 35.26 5.34
6503 9760 5.351189 TGTGTGACTGTTCATATGCATGTAC 59.649 40.000 10.16 0.00 34.11 2.90
6573 10161 2.740055 GCCACCGAGTGTGCTGAG 60.740 66.667 3.82 0.00 44.01 3.35
6652 10241 1.980765 TGAGGAGACATGTGAGGCTTT 59.019 47.619 1.15 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.