Multiple sequence alignment - TraesCS5D01G565300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G565300 chr5D 100.000 2915 0 0 1 2915 563851369 563854283 0.000000e+00 5384.0
1 TraesCS5D01G565300 chr5D 86.573 499 58 9 88 582 526467897 526467404 2.560000e-150 542.0
2 TraesCS5D01G565300 chr5D 94.792 96 3 2 1641 1736 563852965 563853058 6.510000e-32 148.0
3 TraesCS5D01G565300 chr5D 94.792 96 3 2 1597 1690 563853009 563853104 6.510000e-32 148.0
4 TraesCS5D01G565300 chr5D 85.000 120 10 3 2588 2707 563853603 563853714 6.600000e-22 115.0
5 TraesCS5D01G565300 chr5D 85.000 120 10 3 2235 2346 563853956 563854075 6.600000e-22 115.0
6 TraesCS5D01G565300 chr5D 90.000 50 3 2 1687 1736 563852965 563853012 2.430000e-06 63.9
7 TraesCS5D01G565300 chr5D 90.000 50 3 2 1597 1644 563853055 563853104 2.430000e-06 63.9
8 TraesCS5D01G565300 chr4A 95.948 691 23 4 2225 2915 608609544 608608859 0.000000e+00 1116.0
9 TraesCS5D01G565300 chr4A 91.847 417 20 7 1772 2177 608610181 608609768 1.170000e-158 569.0
10 TraesCS5D01G565300 chr4A 79.110 517 38 34 707 1180 608611249 608610760 2.840000e-75 292.0
11 TraesCS5D01G565300 chr4A 88.889 225 13 4 1345 1561 608610640 608610420 1.720000e-67 267.0
12 TraesCS5D01G565300 chr4A 86.885 122 9 2 2235 2349 608609185 608609064 2.360000e-26 130.0
13 TraesCS5D01G565300 chr4A 90.909 44 3 1 2172 2215 117096042 117096084 1.130000e-04 58.4
14 TraesCS5D01G565300 chr4A 84.483 58 4 5 2159 2215 366478500 366478553 5.000000e-03 52.8
15 TraesCS5D01G565300 chr5B 90.395 708 39 9 2210 2912 706304999 706305682 0.000000e+00 904.0
16 TraesCS5D01G565300 chr5B 89.524 630 41 12 1574 2186 706304261 706304882 0.000000e+00 774.0
17 TraesCS5D01G565300 chr5B 82.713 833 64 41 775 1547 706303375 706304187 0.000000e+00 667.0
18 TraesCS5D01G565300 chr5B 82.243 214 19 8 2457 2669 706304907 706305102 1.800000e-37 167.0
19 TraesCS5D01G565300 chr2B 91.948 534 39 3 2380 2912 248122609 248123139 0.000000e+00 745.0
20 TraesCS5D01G565300 chr2B 94.828 174 6 2 2205 2378 248107297 248107467 4.790000e-68 268.0
21 TraesCS5D01G565300 chr2B 89.899 198 15 3 1985 2177 248106996 248107193 1.730000e-62 250.0
22 TraesCS5D01G565300 chr2B 84.034 119 12 2 2235 2346 248122818 248122936 1.100000e-19 108.0
23 TraesCS5D01G565300 chr3D 92.070 517 37 4 66 581 112754179 112754692 0.000000e+00 725.0
24 TraesCS5D01G565300 chr3D 92.857 42 3 0 2176 2217 65607325 65607284 8.720000e-06 62.1
25 TraesCS5D01G565300 chr3D 94.737 38 2 0 2181 2218 94802894 94802931 3.140000e-05 60.2
26 TraesCS5D01G565300 chr1A 91.288 528 37 6 66 591 535083247 535082727 0.000000e+00 712.0
27 TraesCS5D01G565300 chr6D 90.366 519 40 8 66 582 372151899 372151389 0.000000e+00 673.0
28 TraesCS5D01G565300 chr6D 97.436 39 0 1 2180 2217 293153936 293153898 6.740000e-07 65.8
29 TraesCS5D01G565300 chr7D 90.076 524 42 8 65 585 219653603 219653087 0.000000e+00 671.0
30 TraesCS5D01G565300 chr6B 89.675 523 46 8 66 583 131742487 131741968 0.000000e+00 660.0
31 TraesCS5D01G565300 chr4D 89.118 533 38 9 66 584 484113256 484112730 0.000000e+00 645.0
32 TraesCS5D01G565300 chr5A 88.846 520 52 5 67 583 599421728 599422244 4.100000e-178 634.0
33 TraesCS5D01G565300 chr5A 97.368 38 0 1 2180 2217 624724201 624724237 2.430000e-06 63.9
34 TraesCS5D01G565300 chr1B 86.705 519 56 6 68 583 638972047 638972555 5.450000e-157 564.0
35 TraesCS5D01G565300 chr1B 94.737 38 2 0 2180 2217 16238398 16238435 3.140000e-05 60.2
36 TraesCS5D01G565300 chr3A 94.118 68 4 0 1 68 488244438 488244371 1.430000e-18 104.0
37 TraesCS5D01G565300 chrUn 90.278 72 7 0 1 72 89762056 89761985 8.600000e-16 95.3
38 TraesCS5D01G565300 chr7A 95.238 42 0 2 2176 2217 173062963 173063002 6.740000e-07 65.8
39 TraesCS5D01G565300 chr7A 100.000 34 0 0 2184 2217 15699343 15699310 2.430000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G565300 chr5D 563851369 563854283 2914 False 862.542857 5384 91.369143 1 2915 7 chr5D.!!$F1 2914
1 TraesCS5D01G565300 chr4A 608608859 608611249 2390 True 474.800000 1116 88.535800 707 2915 5 chr4A.!!$R1 2208
2 TraesCS5D01G565300 chr5B 706303375 706305682 2307 False 628.000000 904 86.218750 775 2912 4 chr5B.!!$F1 2137
3 TraesCS5D01G565300 chr2B 248122609 248123139 530 False 426.500000 745 87.991000 2235 2912 2 chr2B.!!$F2 677
4 TraesCS5D01G565300 chr3D 112754179 112754692 513 False 725.000000 725 92.070000 66 581 1 chr3D.!!$F2 515
5 TraesCS5D01G565300 chr1A 535082727 535083247 520 True 712.000000 712 91.288000 66 591 1 chr1A.!!$R1 525
6 TraesCS5D01G565300 chr6D 372151389 372151899 510 True 673.000000 673 90.366000 66 582 1 chr6D.!!$R2 516
7 TraesCS5D01G565300 chr7D 219653087 219653603 516 True 671.000000 671 90.076000 65 585 1 chr7D.!!$R1 520
8 TraesCS5D01G565300 chr6B 131741968 131742487 519 True 660.000000 660 89.675000 66 583 1 chr6B.!!$R1 517
9 TraesCS5D01G565300 chr4D 484112730 484113256 526 True 645.000000 645 89.118000 66 584 1 chr4D.!!$R1 518
10 TraesCS5D01G565300 chr5A 599421728 599422244 516 False 634.000000 634 88.846000 67 583 1 chr5A.!!$F1 516
11 TraesCS5D01G565300 chr1B 638972047 638972555 508 False 564.000000 564 86.705000 68 583 1 chr1B.!!$F2 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 617 0.039256 CAAACACGCCCATGGTGAAG 60.039 55.0 11.73 1.17 38.73 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2716 0.107508 CACAGTAGCATGGGTCTGGG 60.108 60.0 0.0 0.0 32.92 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.194719 GCCAGTGCTCCTGAATGC 58.805 61.111 5.64 0.00 44.49 3.56
29 30 1.378250 GCCAGTGCTCCTGAATGCT 60.378 57.895 5.64 0.00 44.49 3.79
30 31 1.654954 GCCAGTGCTCCTGAATGCTG 61.655 60.000 5.64 0.00 44.49 4.41
31 32 1.030488 CCAGTGCTCCTGAATGCTGG 61.030 60.000 5.64 0.00 44.49 4.85
32 33 1.378250 AGTGCTCCTGAATGCTGGC 60.378 57.895 0.00 0.00 33.46 4.85
33 34 2.437180 TGCTCCTGAATGCTGGCG 60.437 61.111 0.00 0.00 33.46 5.69
34 35 2.124983 GCTCCTGAATGCTGGCGA 60.125 61.111 0.00 0.00 33.46 5.54
35 36 1.525535 GCTCCTGAATGCTGGCGAT 60.526 57.895 0.00 0.00 33.46 4.58
36 37 1.783031 GCTCCTGAATGCTGGCGATG 61.783 60.000 0.00 0.00 33.46 3.84
37 38 1.783031 CTCCTGAATGCTGGCGATGC 61.783 60.000 0.00 0.00 33.46 3.91
38 39 2.326897 CTGAATGCTGGCGATGCG 59.673 61.111 0.00 0.00 0.00 4.73
56 57 4.135153 CTGGTCGGCGAGGGTCAG 62.135 72.222 11.20 12.13 0.00 3.51
57 58 4.671590 TGGTCGGCGAGGGTCAGA 62.672 66.667 11.20 0.00 0.00 3.27
58 59 3.827898 GGTCGGCGAGGGTCAGAG 61.828 72.222 11.20 0.00 0.00 3.35
59 60 3.827898 GTCGGCGAGGGTCAGAGG 61.828 72.222 11.20 0.00 0.00 3.69
307 327 1.000993 GTGAGGGAGAGAGGGAGCA 59.999 63.158 0.00 0.00 0.00 4.26
317 337 0.768221 AGAGGGAGCAGTGGGAACAA 60.768 55.000 0.00 0.00 46.06 2.83
362 384 2.208527 GGGGGCGAGTAATGAGACA 58.791 57.895 0.00 0.00 0.00 3.41
481 507 1.550976 AGGCTACGAGCTGCTTTAAGT 59.449 47.619 2.53 5.02 41.99 2.24
482 508 1.927838 GGCTACGAGCTGCTTTAAGTC 59.072 52.381 2.53 0.00 41.99 3.01
585 611 0.318614 GACAACCAAACACGCCCATG 60.319 55.000 0.00 0.00 0.00 3.66
591 617 0.039256 CAAACACGCCCATGGTGAAG 60.039 55.000 11.73 1.17 38.73 3.02
592 618 1.805428 AAACACGCCCATGGTGAAGC 61.805 55.000 11.73 5.78 38.73 3.86
593 619 2.672651 CACGCCCATGGTGAAGCA 60.673 61.111 11.73 0.00 37.60 3.91
594 620 2.672996 ACGCCCATGGTGAAGCAC 60.673 61.111 11.73 0.00 36.58 4.40
595 621 2.672651 CGCCCATGGTGAAGCACA 60.673 61.111 11.73 0.00 35.86 4.57
613 639 1.705256 CACATGTGTGCATTTGGAGC 58.295 50.000 18.03 0.00 39.39 4.70
614 640 0.604578 ACATGTGTGCATTTGGAGCC 59.395 50.000 0.00 0.00 31.99 4.70
615 641 0.604073 CATGTGTGCATTTGGAGCCA 59.396 50.000 0.00 0.00 31.99 4.75
616 642 1.001068 CATGTGTGCATTTGGAGCCAA 59.999 47.619 0.00 0.00 31.99 4.52
647 673 4.471904 CACACATGTGTACTCCCTATGT 57.528 45.455 30.11 1.02 42.83 2.29
649 675 3.198068 CACATGTGTACTCCCTATGTGC 58.802 50.000 18.03 0.00 41.19 4.57
650 676 2.170607 ACATGTGTACTCCCTATGTGCC 59.829 50.000 0.00 0.00 31.34 5.01
651 677 1.945580 TGTGTACTCCCTATGTGCCA 58.054 50.000 0.00 0.00 0.00 4.92
652 678 2.261729 TGTGTACTCCCTATGTGCCAA 58.738 47.619 0.00 0.00 0.00 4.52
653 679 2.027561 TGTGTACTCCCTATGTGCCAAC 60.028 50.000 0.00 0.00 0.00 3.77
654 680 1.206132 TGTACTCCCTATGTGCCAACG 59.794 52.381 0.00 0.00 0.00 4.10
655 681 0.177141 TACTCCCTATGTGCCAACGC 59.823 55.000 0.00 0.00 0.00 4.84
656 682 1.078497 CTCCCTATGTGCCAACGCA 60.078 57.895 0.00 0.00 44.78 5.24
665 691 3.398184 TGCCAACGCATTCATTTCG 57.602 47.368 0.00 0.00 41.12 3.46
666 692 0.109365 TGCCAACGCATTCATTTCGG 60.109 50.000 0.00 0.00 41.12 4.30
667 693 1.413008 GCCAACGCATTCATTTCGGC 61.413 55.000 0.00 0.00 34.03 5.54
670 696 2.651863 CGCATTCATTTCGGCGGC 60.652 61.111 7.21 0.00 45.27 6.53
671 697 2.278792 GCATTCATTTCGGCGGCC 60.279 61.111 9.54 9.54 0.00 6.13
687 713 2.281622 CCGGCCGTGGTGGTTTTA 60.282 61.111 26.12 0.00 41.21 1.52
688 714 1.676303 CCGGCCGTGGTGGTTTTAT 60.676 57.895 26.12 0.00 41.21 1.40
689 715 0.392729 CCGGCCGTGGTGGTTTTATA 60.393 55.000 26.12 0.00 41.21 0.98
690 716 1.670791 CGGCCGTGGTGGTTTTATAT 58.329 50.000 19.50 0.00 41.21 0.86
691 717 2.018515 CGGCCGTGGTGGTTTTATATT 58.981 47.619 19.50 0.00 41.21 1.28
692 718 3.204526 CGGCCGTGGTGGTTTTATATTA 58.795 45.455 19.50 0.00 41.21 0.98
693 719 3.002553 CGGCCGTGGTGGTTTTATATTAC 59.997 47.826 19.50 0.00 41.21 1.89
694 720 3.316029 GGCCGTGGTGGTTTTATATTACC 59.684 47.826 0.00 0.00 41.21 2.85
695 721 3.946558 GCCGTGGTGGTTTTATATTACCA 59.053 43.478 3.07 3.07 41.97 3.25
696 722 4.398673 GCCGTGGTGGTTTTATATTACCAA 59.601 41.667 7.77 0.00 45.45 3.67
704 730 7.850935 TGGTTTTATATTACCAACCAACCAA 57.149 32.000 0.04 0.00 44.56 3.67
705 731 7.668492 TGGTTTTATATTACCAACCAACCAAC 58.332 34.615 0.04 0.00 44.56 3.77
706 732 7.098477 GGTTTTATATTACCAACCAACCAACC 58.902 38.462 0.00 0.00 38.89 3.77
707 733 6.512342 TTTATATTACCAACCAACCAACCG 57.488 37.500 0.00 0.00 0.00 4.44
708 734 2.368311 ATTACCAACCAACCAACCGT 57.632 45.000 0.00 0.00 0.00 4.83
709 735 1.390565 TTACCAACCAACCAACCGTG 58.609 50.000 0.00 0.00 0.00 4.94
710 736 1.102222 TACCAACCAACCAACCGTGC 61.102 55.000 0.00 0.00 0.00 5.34
729 755 1.361668 CGTGCGGGAAGTCATGAAGG 61.362 60.000 0.00 0.00 0.00 3.46
732 758 0.462759 GCGGGAAGTCATGAAGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
735 761 2.472029 GGGAAGTCATGAAGGAGGAGA 58.528 52.381 0.00 0.00 0.00 3.71
743 769 0.898320 TGAAGGAGGAGAAGAAGCCG 59.102 55.000 0.00 0.00 0.00 5.52
746 772 2.363172 GGAGGAGAAGAAGCCGCCT 61.363 63.158 0.00 0.00 40.53 5.52
747 773 1.142965 GAGGAGAAGAAGCCGCCTC 59.857 63.158 0.00 0.00 41.94 4.70
748 774 2.188207 GGAGAAGAAGCCGCCTCC 59.812 66.667 0.00 0.00 38.47 4.30
749 775 2.660064 GGAGAAGAAGCCGCCTCCA 61.660 63.158 7.53 0.00 43.47 3.86
750 776 1.296715 GAGAAGAAGCCGCCTCCAA 59.703 57.895 0.00 0.00 0.00 3.53
751 777 0.742635 GAGAAGAAGCCGCCTCCAAG 60.743 60.000 0.00 0.00 0.00 3.61
754 780 4.035102 GAAGCCGCCTCCAAGGGT 62.035 66.667 0.00 0.00 40.36 4.34
755 781 4.351054 AAGCCGCCTCCAAGGGTG 62.351 66.667 0.00 0.00 38.38 4.61
761 787 3.661648 CCTCCAAGGGTGGGGTGG 61.662 72.222 0.00 0.00 45.07 4.61
762 788 3.661648 CTCCAAGGGTGGGGTGGG 61.662 72.222 0.00 0.00 46.01 4.61
765 791 4.299796 CAAGGGTGGGGTGGGGTG 62.300 72.222 0.00 0.00 0.00 4.61
766 792 4.542627 AAGGGTGGGGTGGGGTGA 62.543 66.667 0.00 0.00 0.00 4.02
770 796 3.966543 GTGGGGTGGGGTGAGGTG 61.967 72.222 0.00 0.00 0.00 4.00
772 798 4.995058 GGGGTGGGGTGAGGTGGA 62.995 72.222 0.00 0.00 0.00 4.02
773 799 3.647771 GGGTGGGGTGAGGTGGAC 61.648 72.222 0.00 0.00 0.00 4.02
823 862 2.668550 AAGAAGGAACGGTGGCGC 60.669 61.111 0.00 0.00 0.00 6.53
844 883 1.049289 GGAACGGTGATCCCTAGGCT 61.049 60.000 2.05 0.00 0.00 4.58
846 885 1.340568 GAACGGTGATCCCTAGGCTAC 59.659 57.143 2.05 0.00 0.00 3.58
968 1018 1.385206 GGCCTCCTCATTCCTCCCT 60.385 63.158 0.00 0.00 0.00 4.20
969 1019 1.704007 GGCCTCCTCATTCCTCCCTG 61.704 65.000 0.00 0.00 0.00 4.45
971 1021 1.704007 CCTCCTCATTCCTCCCTGCC 61.704 65.000 0.00 0.00 0.00 4.85
972 1022 0.693767 CTCCTCATTCCTCCCTGCCT 60.694 60.000 0.00 0.00 0.00 4.75
973 1023 0.984961 TCCTCATTCCTCCCTGCCTG 60.985 60.000 0.00 0.00 0.00 4.85
974 1024 1.153005 CTCATTCCTCCCTGCCTGC 60.153 63.158 0.00 0.00 0.00 4.85
975 1025 1.617536 TCATTCCTCCCTGCCTGCT 60.618 57.895 0.00 0.00 0.00 4.24
976 1026 1.153005 CATTCCTCCCTGCCTGCTC 60.153 63.158 0.00 0.00 0.00 4.26
979 1029 3.795041 CCTCCCTGCCTGCTCCTG 61.795 72.222 0.00 0.00 0.00 3.86
987 1037 2.976490 GCCTGCTCCTGTGGTCCAT 61.976 63.158 0.00 0.00 0.00 3.41
988 1038 1.687612 CCTGCTCCTGTGGTCCATT 59.312 57.895 0.00 0.00 0.00 3.16
989 1039 0.393537 CCTGCTCCTGTGGTCCATTC 60.394 60.000 0.00 0.00 0.00 2.67
990 1040 0.325933 CTGCTCCTGTGGTCCATTCA 59.674 55.000 0.00 0.00 0.00 2.57
991 1041 0.325933 TGCTCCTGTGGTCCATTCAG 59.674 55.000 0.00 0.00 0.00 3.02
993 1043 0.393537 CTCCTGTGGTCCATTCAGCC 60.394 60.000 0.00 0.00 0.00 4.85
1064 1148 0.811616 CATCGGCTCCAGGTAAGCAC 60.812 60.000 2.65 0.00 41.66 4.40
1103 1199 3.793144 GGCGTGCTTCTTGAGGCG 61.793 66.667 0.54 0.00 0.00 5.52
1143 1239 4.143333 ATCCGGTCGGCTCCAACG 62.143 66.667 0.00 0.00 34.68 4.10
1165 1261 3.909086 AAGCGCTTCCTCCACCTGC 62.909 63.158 18.98 0.00 0.00 4.85
1182 1278 1.301401 GCCTTGCTCGGTACACACA 60.301 57.895 0.00 0.00 0.00 3.72
1186 1282 0.175989 TTGCTCGGTACACACACACA 59.824 50.000 0.00 0.00 0.00 3.72
1187 1283 0.528901 TGCTCGGTACACACACACAC 60.529 55.000 0.00 0.00 0.00 3.82
1188 1284 0.528901 GCTCGGTACACACACACACA 60.529 55.000 0.00 0.00 0.00 3.72
1189 1285 1.205657 CTCGGTACACACACACACAC 58.794 55.000 0.00 0.00 0.00 3.82
1232 1330 1.419012 TCCATCTCCATGCTCATGACC 59.581 52.381 11.17 0.00 41.20 4.02
1284 1407 2.349590 GCAAAATGCTCCCACCAAATC 58.650 47.619 0.00 0.00 40.96 2.17
1307 1438 2.625737 TGCTGAATGCTCTCAACTAGC 58.374 47.619 0.00 0.00 43.37 3.42
1319 1450 5.565834 GCTCTCAACTAGCACTACTTTGTCT 60.566 44.000 0.00 0.00 39.83 3.41
1320 1451 5.773575 TCTCAACTAGCACTACTTTGTCTG 58.226 41.667 0.00 0.00 0.00 3.51
1321 1452 5.535030 TCTCAACTAGCACTACTTTGTCTGA 59.465 40.000 0.00 0.00 0.00 3.27
1322 1453 6.209589 TCTCAACTAGCACTACTTTGTCTGAT 59.790 38.462 0.00 0.00 0.00 2.90
1323 1454 6.159293 TCAACTAGCACTACTTTGTCTGATG 58.841 40.000 0.00 0.00 0.00 3.07
1324 1455 5.078411 ACTAGCACTACTTTGTCTGATGG 57.922 43.478 0.00 0.00 0.00 3.51
1325 1456 4.528596 ACTAGCACTACTTTGTCTGATGGT 59.471 41.667 0.00 0.00 0.00 3.55
1326 1457 3.668447 AGCACTACTTTGTCTGATGGTG 58.332 45.455 0.00 0.00 0.00 4.17
1327 1458 3.324846 AGCACTACTTTGTCTGATGGTGA 59.675 43.478 0.00 0.00 0.00 4.02
1328 1459 3.433615 GCACTACTTTGTCTGATGGTGAC 59.566 47.826 0.00 0.00 35.21 3.67
1329 1460 3.675225 CACTACTTTGTCTGATGGTGACG 59.325 47.826 0.00 0.00 37.26 4.35
1330 1461 3.572682 ACTACTTTGTCTGATGGTGACGA 59.427 43.478 0.00 0.00 37.26 4.20
1331 1462 3.685139 ACTTTGTCTGATGGTGACGAT 57.315 42.857 0.00 0.00 37.26 3.73
1332 1463 3.329386 ACTTTGTCTGATGGTGACGATG 58.671 45.455 0.00 0.00 37.26 3.84
1333 1464 3.006859 ACTTTGTCTGATGGTGACGATGA 59.993 43.478 0.00 0.00 37.26 2.92
1341 1472 4.563061 TGATGGTGACGATGATGATGATC 58.437 43.478 0.00 0.00 0.00 2.92
1369 1500 3.122297 CACTCAAGATCCGCTCTGAATC 58.878 50.000 0.00 0.00 33.29 2.52
1530 1668 2.117051 GGTAACGAATTCCCTCCCTCT 58.883 52.381 0.00 0.00 0.00 3.69
1533 1671 0.340208 ACGAATTCCCTCCCTCTCCT 59.660 55.000 0.00 0.00 0.00 3.69
1534 1672 1.044611 CGAATTCCCTCCCTCTCCTC 58.955 60.000 0.00 0.00 0.00 3.71
1542 1680 1.007238 CCTCCCTCTCCTCACTAACCA 59.993 57.143 0.00 0.00 0.00 3.67
1571 1772 4.410492 CTCAACATGGAGCTACAACAAC 57.590 45.455 0.66 0.00 0.00 3.32
1572 1773 3.814625 TCAACATGGAGCTACAACAACA 58.185 40.909 0.66 0.00 0.00 3.33
1648 1849 9.693739 ACCAATTCCATATGTTATTCTTGTGTA 57.306 29.630 1.24 0.00 0.00 2.90
1655 1856 9.950680 CCATATGTTATTCTTGTGTATTGTTCC 57.049 33.333 1.24 0.00 0.00 3.62
1706 1909 9.733556 TGTTATTCTTGTGTATTGTTCCATAGT 57.266 29.630 0.00 0.00 0.00 2.12
1738 1941 7.510549 ACCAATTCCATATGTTATTCTTCCG 57.489 36.000 1.24 0.00 0.00 4.30
1739 1942 7.060421 ACCAATTCCATATGTTATTCTTCCGT 58.940 34.615 1.24 0.00 0.00 4.69
1740 1943 7.228706 ACCAATTCCATATGTTATTCTTCCGTC 59.771 37.037 1.24 0.00 0.00 4.79
1754 1957 6.968131 TTCTTCCGTCTTCTTCATAACATG 57.032 37.500 0.00 0.00 0.00 3.21
1767 1970 3.973305 TCATAACATGGTGCTGGATCCTA 59.027 43.478 14.23 0.00 0.00 2.94
1896 2099 1.398739 TCTCTCATCGACAAGCTCGTC 59.601 52.381 0.00 0.00 43.45 4.20
1918 2121 6.223852 GTCACAGACAAGGATTCTTAGAACA 58.776 40.000 0.00 0.00 32.09 3.18
1962 2176 2.487762 TGAATAGCTTTTTGGGTGCTCG 59.512 45.455 0.00 0.00 38.15 5.03
2020 2237 3.861840 TGATGTACTGGCTGAAACTAGC 58.138 45.455 0.00 0.00 42.94 3.42
2077 2295 5.503634 TTGTGTATGCTATGCTATCCCAT 57.496 39.130 0.00 0.00 0.00 4.00
2153 2377 6.647334 ATGTATCCTATCAGTGTCACTCAG 57.353 41.667 1.37 0.89 0.00 3.35
2177 2401 5.062809 GCACTGCTGAGATGTTTACTCTAAC 59.937 44.000 0.00 0.00 35.66 2.34
2196 2424 8.706521 ACTCTAACATAAGAAAATACTCCCTCC 58.293 37.037 0.00 0.00 0.00 4.30
2197 2425 7.723324 TCTAACATAAGAAAATACTCCCTCCG 58.277 38.462 0.00 0.00 0.00 4.63
2198 2426 5.952347 ACATAAGAAAATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
2199 2427 6.309389 ACATAAGAAAATACTCCCTCCGTT 57.691 37.500 0.00 0.00 0.00 4.44
2200 2428 6.346896 ACATAAGAAAATACTCCCTCCGTTC 58.653 40.000 0.00 0.00 0.00 3.95
2201 2429 3.908643 AGAAAATACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
2202 2430 3.178865 AGAAAATACTCCCTCCGTTCCA 58.821 45.455 0.00 0.00 0.00 3.53
2203 2431 3.585732 AGAAAATACTCCCTCCGTTCCAA 59.414 43.478 0.00 0.00 0.00 3.53
2204 2432 4.042435 AGAAAATACTCCCTCCGTTCCAAA 59.958 41.667 0.00 0.00 0.00 3.28
2205 2433 4.586306 AAATACTCCCTCCGTTCCAAAT 57.414 40.909 0.00 0.00 0.00 2.32
2206 2434 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
2207 2435 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
2209 2437 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2210 2438 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2211 2439 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2212 2440 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2213 2441 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2214 2442 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2215 2443 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2216 2444 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2217 2445 2.981805 CGTTCCAAATTACTCGTCGTGA 59.018 45.455 0.56 0.00 0.00 4.35
2218 2446 3.181546 CGTTCCAAATTACTCGTCGTGAC 60.182 47.826 0.56 0.00 0.00 3.67
2220 2448 3.311106 TCCAAATTACTCGTCGTGACAC 58.689 45.455 0.56 0.00 0.00 3.67
2222 2450 3.121126 CCAAATTACTCGTCGTGACACAC 60.121 47.826 6.37 2.56 0.00 3.82
2223 2451 3.637998 AATTACTCGTCGTGACACACT 57.362 42.857 6.37 0.00 31.34 3.55
2252 2652 4.965814 TCAGATATCATGACCAAGCTTCC 58.034 43.478 5.32 0.00 0.00 3.46
2262 2662 2.154462 ACCAAGCTTCCGAACATGAAG 58.846 47.619 0.00 0.00 41.70 3.02
2268 2668 3.670311 CTTCCGAACATGAAGCATGAG 57.330 47.619 13.79 5.24 43.81 2.90
2269 2669 2.768253 TCCGAACATGAAGCATGAGT 57.232 45.000 13.79 1.90 43.81 3.41
2270 2670 2.621338 TCCGAACATGAAGCATGAGTC 58.379 47.619 13.79 9.27 43.81 3.36
2271 2671 2.028203 TCCGAACATGAAGCATGAGTCA 60.028 45.455 13.79 0.00 43.81 3.41
2272 2672 2.094894 CCGAACATGAAGCATGAGTCAC 59.905 50.000 13.79 0.00 43.81 3.67
2273 2673 2.222663 CGAACATGAAGCATGAGTCACG 60.223 50.000 13.79 0.00 43.81 4.35
2274 2674 1.730501 ACATGAAGCATGAGTCACGG 58.269 50.000 13.79 0.00 43.81 4.94
2275 2675 1.002430 ACATGAAGCATGAGTCACGGT 59.998 47.619 13.79 0.00 43.81 4.83
2276 2676 2.233676 ACATGAAGCATGAGTCACGGTA 59.766 45.455 13.79 0.00 43.81 4.02
2277 2677 2.363788 TGAAGCATGAGTCACGGTAC 57.636 50.000 0.00 0.00 0.00 3.34
2279 2679 2.263077 GAAGCATGAGTCACGGTACAG 58.737 52.381 0.00 0.00 0.00 2.74
2280 2680 0.108615 AGCATGAGTCACGGTACAGC 60.109 55.000 0.00 0.00 0.00 4.40
2281 2681 0.108615 GCATGAGTCACGGTACAGCT 60.109 55.000 0.00 0.00 0.00 4.24
2282 2682 1.134367 GCATGAGTCACGGTACAGCTA 59.866 52.381 0.00 0.00 0.00 3.32
2283 2683 2.416836 GCATGAGTCACGGTACAGCTAA 60.417 50.000 0.00 0.00 0.00 3.09
2285 2685 3.570926 TGAGTCACGGTACAGCTAAAG 57.429 47.619 0.00 0.00 0.00 1.85
2286 2686 2.889045 TGAGTCACGGTACAGCTAAAGT 59.111 45.455 0.00 0.00 0.00 2.66
2287 2687 3.243336 GAGTCACGGTACAGCTAAAGTG 58.757 50.000 0.00 0.00 0.00 3.16
2288 2688 2.889045 AGTCACGGTACAGCTAAAGTGA 59.111 45.455 0.00 5.84 36.43 3.41
2289 2689 3.510360 AGTCACGGTACAGCTAAAGTGAT 59.490 43.478 11.11 1.93 40.14 3.06
2291 2691 3.257375 TCACGGTACAGCTAAAGTGATGT 59.743 43.478 0.00 0.00 34.24 3.06
2292 2692 3.994392 CACGGTACAGCTAAAGTGATGTT 59.006 43.478 0.00 0.00 0.00 2.71
2293 2693 5.047872 TCACGGTACAGCTAAAGTGATGTTA 60.048 40.000 0.00 0.00 34.24 2.41
2294 2694 5.288712 CACGGTACAGCTAAAGTGATGTTAG 59.711 44.000 0.00 0.00 0.00 2.34
2295 2695 5.184479 ACGGTACAGCTAAAGTGATGTTAGA 59.816 40.000 0.00 0.00 31.37 2.10
2296 2696 6.097356 CGGTACAGCTAAAGTGATGTTAGAA 58.903 40.000 0.00 0.00 31.37 2.10
2297 2697 6.757010 CGGTACAGCTAAAGTGATGTTAGAAT 59.243 38.462 0.00 0.00 31.37 2.40
2299 2699 8.947115 GGTACAGCTAAAGTGATGTTAGAATTT 58.053 33.333 0.00 0.00 31.37 1.82
2302 2702 9.289782 ACAGCTAAAGTGATGTTAGAATTTTCT 57.710 29.630 0.00 0.00 41.24 2.52
2308 2708 7.617041 AGTGATGTTAGAATTTTCTACTGGC 57.383 36.000 0.00 0.00 39.36 4.85
2309 2709 7.168219 AGTGATGTTAGAATTTTCTACTGGCA 58.832 34.615 0.00 0.00 39.36 4.92
2310 2710 7.665559 AGTGATGTTAGAATTTTCTACTGGCAA 59.334 33.333 0.00 0.00 39.36 4.52
2311 2711 8.462016 GTGATGTTAGAATTTTCTACTGGCAAT 58.538 33.333 0.00 0.00 39.36 3.56
2312 2712 8.461222 TGATGTTAGAATTTTCTACTGGCAATG 58.539 33.333 0.00 0.00 39.36 2.82
2316 2716 4.082026 AGAATTTTCTACTGGCAATGCCAC 60.082 41.667 24.87 9.48 44.51 5.01
2317 2717 7.075067 AGAATTTTCTACTGGCAATGCCACC 62.075 44.000 24.87 0.00 44.51 4.61
2325 2725 2.440147 CAATGCCACCCAGACCCA 59.560 61.111 0.00 0.00 0.00 4.51
2326 2726 1.000739 CAATGCCACCCAGACCCAT 59.999 57.895 0.00 0.00 0.00 4.00
2327 2727 1.000739 AATGCCACCCAGACCCATG 59.999 57.895 0.00 0.00 0.00 3.66
2328 2728 3.667217 ATGCCACCCAGACCCATGC 62.667 63.158 0.00 0.00 0.00 4.06
2329 2729 4.052518 GCCACCCAGACCCATGCT 62.053 66.667 0.00 0.00 0.00 3.79
2330 2730 2.679342 GCCACCCAGACCCATGCTA 61.679 63.158 0.00 0.00 0.00 3.49
2331 2731 1.224592 CCACCCAGACCCATGCTAC 59.775 63.158 0.00 0.00 0.00 3.58
2332 2732 1.274703 CCACCCAGACCCATGCTACT 61.275 60.000 0.00 0.00 0.00 2.57
2334 2734 0.547712 ACCCAGACCCATGCTACTGT 60.548 55.000 0.00 0.00 0.00 3.55
2335 2735 0.107508 CCCAGACCCATGCTACTGTG 60.108 60.000 0.00 0.00 0.00 3.66
2336 2736 0.904649 CCAGACCCATGCTACTGTGA 59.095 55.000 0.00 0.00 0.00 3.58
2337 2737 1.134580 CCAGACCCATGCTACTGTGAG 60.135 57.143 0.00 0.00 0.00 3.51
2338 2738 1.134580 CAGACCCATGCTACTGTGAGG 60.135 57.143 0.00 0.00 0.00 3.86
2339 2739 1.195115 GACCCATGCTACTGTGAGGA 58.805 55.000 0.00 0.00 0.00 3.71
2341 2741 2.965831 GACCCATGCTACTGTGAGGATA 59.034 50.000 0.00 0.00 0.00 2.59
2342 2742 3.580458 GACCCATGCTACTGTGAGGATAT 59.420 47.826 0.00 0.00 0.00 1.63
2343 2743 3.976654 ACCCATGCTACTGTGAGGATATT 59.023 43.478 0.00 0.00 0.00 1.28
2345 2745 4.999950 CCCATGCTACTGTGAGGATATTTC 59.000 45.833 0.00 0.00 0.00 2.17
2347 2747 5.699915 CCATGCTACTGTGAGGATATTTCAG 59.300 44.000 0.00 0.00 0.00 3.02
2349 2749 5.664457 TGCTACTGTGAGGATATTTCAGTG 58.336 41.667 0.00 0.00 39.27 3.66
2350 2750 5.422012 TGCTACTGTGAGGATATTTCAGTGA 59.578 40.000 0.00 0.00 39.27 3.41
2351 2751 5.751028 GCTACTGTGAGGATATTTCAGTGAC 59.249 44.000 0.00 0.00 39.27 3.67
2353 2753 6.365970 ACTGTGAGGATATTTCAGTGACTT 57.634 37.500 0.00 0.00 37.85 3.01
2354 2754 6.169094 ACTGTGAGGATATTTCAGTGACTTG 58.831 40.000 0.00 0.00 37.85 3.16
2355 2755 5.491070 TGTGAGGATATTTCAGTGACTTGG 58.509 41.667 0.00 0.00 0.00 3.61
2356 2756 5.013079 TGTGAGGATATTTCAGTGACTTGGT 59.987 40.000 0.00 0.00 0.00 3.67
2358 2758 7.103641 GTGAGGATATTTCAGTGACTTGGTAA 58.896 38.462 0.00 0.00 0.00 2.85
2360 2760 7.987458 TGAGGATATTTCAGTGACTTGGTAATC 59.013 37.037 0.00 0.00 0.00 1.75
2362 2762 7.770897 AGGATATTTCAGTGACTTGGTAATCAC 59.229 37.037 0.00 0.00 44.64 3.06
2371 2771 7.858052 GTGACTTGGTAATCACTCAAATTTG 57.142 36.000 12.15 12.15 41.69 2.32
2372 2772 7.648142 GTGACTTGGTAATCACTCAAATTTGA 58.352 34.615 19.45 19.45 41.69 2.69
2373 2773 8.299570 GTGACTTGGTAATCACTCAAATTTGAT 58.700 33.333 20.76 8.72 41.69 2.57
2374 2774 8.514594 TGACTTGGTAATCACTCAAATTTGATC 58.485 33.333 20.76 11.07 36.46 2.92
2376 2776 7.671398 ACTTGGTAATCACTCAAATTTGATCCT 59.329 33.333 20.76 4.55 36.46 3.24
2378 2778 6.947733 TGGTAATCACTCAAATTTGATCCTGT 59.052 34.615 20.76 12.41 36.46 4.00
2380 2780 7.121168 GGTAATCACTCAAATTTGATCCTGTCA 59.879 37.037 20.76 2.93 36.46 3.58
2381 2781 6.754702 ATCACTCAAATTTGATCCTGTCAG 57.245 37.500 20.76 9.40 38.29 3.51
2382 2782 4.456911 TCACTCAAATTTGATCCTGTCAGC 59.543 41.667 20.76 0.00 38.29 4.26
2383 2783 3.760684 ACTCAAATTTGATCCTGTCAGCC 59.239 43.478 20.76 0.00 38.29 4.85
2409 2809 7.703058 AAGAAAATGGTATTTAGGACAGGTG 57.297 36.000 0.00 0.00 0.00 4.00
2432 2832 2.649975 GGTACGACGGTCATCGCG 60.650 66.667 9.10 0.00 46.22 5.87
2689 3093 1.616628 GAGGACCCCAGACCCATGT 60.617 63.158 0.00 0.00 0.00 3.21
2815 3219 2.410730 CACAGGATCGTGTTAACCGAAC 59.589 50.000 18.07 16.26 37.93 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.378250 GCCAGCATTCAGGAGCACT 60.378 57.895 0.00 0.00 0.00 4.40
15 16 2.758089 CGCCAGCATTCAGGAGCAC 61.758 63.158 0.00 0.00 0.00 4.40
16 17 2.261430 ATCGCCAGCATTCAGGAGCA 62.261 55.000 0.00 0.00 0.00 4.26
17 18 1.525535 ATCGCCAGCATTCAGGAGC 60.526 57.895 0.00 0.00 0.00 4.70
18 19 1.783031 GCATCGCCAGCATTCAGGAG 61.783 60.000 0.00 0.00 0.00 3.69
19 20 1.820906 GCATCGCCAGCATTCAGGA 60.821 57.895 0.00 0.00 0.00 3.86
20 21 2.719979 GCATCGCCAGCATTCAGG 59.280 61.111 0.00 0.00 0.00 3.86
21 22 2.326897 CGCATCGCCAGCATTCAG 59.673 61.111 0.00 0.00 0.00 3.02
39 40 4.135153 CTGACCCTCGCCGACCAG 62.135 72.222 0.00 0.00 0.00 4.00
40 41 4.671590 TCTGACCCTCGCCGACCA 62.672 66.667 0.00 0.00 0.00 4.02
41 42 3.827898 CTCTGACCCTCGCCGACC 61.828 72.222 0.00 0.00 0.00 4.79
42 43 3.827898 CCTCTGACCCTCGCCGAC 61.828 72.222 0.00 0.00 0.00 4.79
307 327 0.606401 CCAGTCGCATTGTTCCCACT 60.606 55.000 0.00 0.00 0.00 4.00
317 337 4.760047 GTCACCGCCCAGTCGCAT 62.760 66.667 0.00 0.00 0.00 4.73
381 403 2.904866 GTTGCACACCTCGGGCAA 60.905 61.111 0.00 0.00 44.50 4.52
481 507 4.243008 TTTGTGGCCCGCACGAGA 62.243 61.111 0.00 0.00 0.00 4.04
482 508 4.025401 GTTTGTGGCCCGCACGAG 62.025 66.667 0.00 0.00 0.00 4.18
594 620 5.662093 TTGGCTCCAAATGCACACATGTG 62.662 47.826 24.25 24.25 40.69 3.21
595 621 0.604578 GGCTCCAAATGCACACATGT 59.395 50.000 0.00 0.00 36.36 3.21
596 622 0.604073 TGGCTCCAAATGCACACATG 59.396 50.000 0.00 0.00 36.36 3.21
597 623 1.340088 TTGGCTCCAAATGCACACAT 58.660 45.000 0.00 0.00 38.49 3.21
598 624 1.117994 TTTGGCTCCAAATGCACACA 58.882 45.000 9.84 0.00 40.51 3.72
599 625 2.237393 TTTTGGCTCCAAATGCACAC 57.763 45.000 14.16 0.00 44.14 3.82
600 626 2.996249 TTTTTGGCTCCAAATGCACA 57.004 40.000 14.16 0.00 44.14 4.57
627 653 3.369471 GCACATAGGGAGTACACATGTGT 60.369 47.826 32.47 32.47 45.22 3.72
628 654 3.198068 GCACATAGGGAGTACACATGTG 58.802 50.000 24.25 24.25 45.86 3.21
629 655 2.170607 GGCACATAGGGAGTACACATGT 59.829 50.000 0.00 0.00 0.00 3.21
630 656 2.170397 TGGCACATAGGGAGTACACATG 59.830 50.000 0.00 0.00 0.00 3.21
631 657 2.477245 TGGCACATAGGGAGTACACAT 58.523 47.619 0.00 0.00 0.00 3.21
632 658 1.945580 TGGCACATAGGGAGTACACA 58.054 50.000 0.00 0.00 0.00 3.72
633 659 2.629051 GTTGGCACATAGGGAGTACAC 58.371 52.381 0.00 0.00 39.30 2.90
634 660 1.206132 CGTTGGCACATAGGGAGTACA 59.794 52.381 0.00 0.00 39.30 2.90
635 661 1.935933 CGTTGGCACATAGGGAGTAC 58.064 55.000 0.00 0.00 39.30 2.73
636 662 0.177141 GCGTTGGCACATAGGGAGTA 59.823 55.000 0.00 0.00 39.30 2.59
637 663 1.078426 GCGTTGGCACATAGGGAGT 60.078 57.895 0.00 0.00 39.30 3.85
638 664 1.078497 TGCGTTGGCACATAGGGAG 60.078 57.895 0.00 0.00 46.21 4.30
639 665 3.073378 TGCGTTGGCACATAGGGA 58.927 55.556 0.00 0.00 46.21 4.20
648 674 1.413008 GCCGAAATGAATGCGTTGGC 61.413 55.000 0.00 0.00 40.52 4.52
649 675 1.133363 CGCCGAAATGAATGCGTTGG 61.133 55.000 0.00 0.00 41.95 3.77
650 676 1.133363 CCGCCGAAATGAATGCGTTG 61.133 55.000 0.00 0.00 45.18 4.10
651 677 1.136565 CCGCCGAAATGAATGCGTT 59.863 52.632 0.00 0.00 45.18 4.84
652 678 2.791256 CCGCCGAAATGAATGCGT 59.209 55.556 0.00 0.00 45.18 5.24
653 679 2.651863 GCCGCCGAAATGAATGCG 60.652 61.111 0.00 0.00 46.14 4.73
654 680 2.278792 GGCCGCCGAAATGAATGC 60.279 61.111 0.00 0.00 0.00 3.56
670 696 0.392729 TATAAAACCACCACGGCCGG 60.393 55.000 31.76 18.27 39.03 6.13
671 697 1.670791 ATATAAAACCACCACGGCCG 58.329 50.000 26.86 26.86 39.03 6.13
672 698 3.316029 GGTAATATAAAACCACCACGGCC 59.684 47.826 0.00 0.00 39.03 6.13
673 699 3.946558 TGGTAATATAAAACCACCACGGC 59.053 43.478 5.64 0.00 40.84 5.68
674 700 5.163632 GGTTGGTAATATAAAACCACCACGG 60.164 44.000 8.65 0.00 45.31 4.94
675 701 5.415077 TGGTTGGTAATATAAAACCACCACG 59.585 40.000 17.60 0.00 45.41 4.94
676 702 6.837471 TGGTTGGTAATATAAAACCACCAC 57.163 37.500 17.60 11.66 45.41 4.16
681 707 7.098477 GGTTGGTTGGTTGGTAATATAAAACC 58.902 38.462 0.00 0.00 42.03 3.27
682 708 6.807720 CGGTTGGTTGGTTGGTAATATAAAAC 59.192 38.462 0.00 0.00 0.00 2.43
683 709 6.492772 ACGGTTGGTTGGTTGGTAATATAAAA 59.507 34.615 0.00 0.00 0.00 1.52
684 710 6.008960 ACGGTTGGTTGGTTGGTAATATAAA 58.991 36.000 0.00 0.00 0.00 1.40
685 711 5.415077 CACGGTTGGTTGGTTGGTAATATAA 59.585 40.000 0.00 0.00 0.00 0.98
686 712 4.942483 CACGGTTGGTTGGTTGGTAATATA 59.058 41.667 0.00 0.00 0.00 0.86
687 713 3.759618 CACGGTTGGTTGGTTGGTAATAT 59.240 43.478 0.00 0.00 0.00 1.28
688 714 3.147629 CACGGTTGGTTGGTTGGTAATA 58.852 45.455 0.00 0.00 0.00 0.98
689 715 1.957877 CACGGTTGGTTGGTTGGTAAT 59.042 47.619 0.00 0.00 0.00 1.89
690 716 1.390565 CACGGTTGGTTGGTTGGTAA 58.609 50.000 0.00 0.00 0.00 2.85
691 717 1.102222 GCACGGTTGGTTGGTTGGTA 61.102 55.000 0.00 0.00 0.00 3.25
692 718 2.419739 GCACGGTTGGTTGGTTGGT 61.420 57.895 0.00 0.00 0.00 3.67
693 719 2.415426 GCACGGTTGGTTGGTTGG 59.585 61.111 0.00 0.00 0.00 3.77
694 720 2.025441 CGCACGGTTGGTTGGTTG 59.975 61.111 0.00 0.00 0.00 3.77
695 721 2.438795 ACGCACGGTTGGTTGGTT 60.439 55.556 0.00 0.00 0.00 3.67
696 722 3.206246 CACGCACGGTTGGTTGGT 61.206 61.111 0.00 0.00 0.00 3.67
697 723 4.622456 GCACGCACGGTTGGTTGG 62.622 66.667 0.00 0.00 0.00 3.77
698 724 4.954680 CGCACGCACGGTTGGTTG 62.955 66.667 0.00 0.00 0.00 3.77
707 733 2.742372 ATGACTTCCCGCACGCAC 60.742 61.111 0.00 0.00 0.00 5.34
708 734 2.723586 TTCATGACTTCCCGCACGCA 62.724 55.000 0.00 0.00 0.00 5.24
709 735 1.970917 CTTCATGACTTCCCGCACGC 61.971 60.000 0.00 0.00 0.00 5.34
710 736 1.361668 CCTTCATGACTTCCCGCACG 61.362 60.000 0.00 0.00 0.00 5.34
719 745 3.197549 GCTTCTTCTCCTCCTTCATGACT 59.802 47.826 0.00 0.00 0.00 3.41
729 755 1.142965 GAGGCGGCTTCTTCTCCTC 59.857 63.158 14.76 0.00 36.86 3.71
732 758 0.742635 CTTGGAGGCGGCTTCTTCTC 60.743 60.000 19.35 1.61 0.00 2.87
735 761 2.352805 CCTTGGAGGCGGCTTCTT 59.647 61.111 19.35 0.00 0.00 2.52
748 774 4.299796 CACCCCACCCCACCCTTG 62.300 72.222 0.00 0.00 0.00 3.61
749 775 4.542627 TCACCCCACCCCACCCTT 62.543 66.667 0.00 0.00 0.00 3.95
755 781 4.995058 TCCACCTCACCCCACCCC 62.995 72.222 0.00 0.00 0.00 4.95
757 783 2.529389 AGTCCACCTCACCCCACC 60.529 66.667 0.00 0.00 0.00 4.61
761 787 2.348998 CAGCAGTCCACCTCACCC 59.651 66.667 0.00 0.00 0.00 4.61
762 788 2.359230 GCAGCAGTCCACCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
763 789 2.740055 CGCAGCAGTCCACCTCAC 60.740 66.667 0.00 0.00 0.00 3.51
764 790 3.233980 ACGCAGCAGTCCACCTCA 61.234 61.111 0.00 0.00 0.00 3.86
765 791 2.740055 CACGCAGCAGTCCACCTC 60.740 66.667 0.00 0.00 0.00 3.85
766 792 4.996434 GCACGCAGCAGTCCACCT 62.996 66.667 0.00 0.00 44.79 4.00
823 862 0.753262 CCTAGGGATCACCGTTCCAG 59.247 60.000 0.00 0.00 46.96 3.86
860 899 0.892755 TATCGACCCACACACAGACC 59.107 55.000 0.00 0.00 0.00 3.85
968 1018 3.640407 GGACCACAGGAGCAGGCA 61.640 66.667 0.00 0.00 0.00 4.75
969 1019 2.490270 AATGGACCACAGGAGCAGGC 62.490 60.000 0.00 0.00 0.00 4.85
971 1021 0.325933 TGAATGGACCACAGGAGCAG 59.674 55.000 0.00 0.00 0.00 4.24
972 1022 0.325933 CTGAATGGACCACAGGAGCA 59.674 55.000 0.00 0.00 0.00 4.26
973 1023 1.028868 GCTGAATGGACCACAGGAGC 61.029 60.000 12.68 7.37 33.00 4.70
974 1024 0.393537 GGCTGAATGGACCACAGGAG 60.394 60.000 12.68 1.71 33.00 3.69
975 1025 1.685224 GGCTGAATGGACCACAGGA 59.315 57.895 12.68 0.00 33.00 3.86
976 1026 1.746615 CGGCTGAATGGACCACAGG 60.747 63.158 12.68 0.00 33.00 4.00
979 1029 3.134127 GGCGGCTGAATGGACCAC 61.134 66.667 0.00 0.00 0.00 4.16
1097 1193 4.087892 GGAAGCTCTGCCGCCTCA 62.088 66.667 0.00 0.00 0.00 3.86
1103 1199 2.932130 GATGGACGGGAAGCTCTGCC 62.932 65.000 0.00 0.00 0.00 4.85
1165 1261 0.249699 TGTGTGTGTACCGAGCAAGG 60.250 55.000 0.00 0.00 37.30 3.61
1182 1278 0.613260 AGGAGTGTGTGTGTGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72
1186 1282 0.181114 ATGCAGGAGTGTGTGTGTGT 59.819 50.000 0.00 0.00 0.00 3.72
1187 1283 1.265095 GAATGCAGGAGTGTGTGTGTG 59.735 52.381 0.00 0.00 0.00 3.82
1188 1284 1.141657 AGAATGCAGGAGTGTGTGTGT 59.858 47.619 0.00 0.00 0.00 3.72
1189 1285 1.888215 AGAATGCAGGAGTGTGTGTG 58.112 50.000 0.00 0.00 0.00 3.82
1276 1378 2.546778 GCATTCAGCATGGATTTGGTG 58.453 47.619 0.00 0.00 44.48 4.17
1307 1438 3.675225 CGTCACCATCAGACAAAGTAGTG 59.325 47.826 0.00 0.00 35.77 2.74
1311 1442 3.006859 TCATCGTCACCATCAGACAAAGT 59.993 43.478 0.00 0.00 35.77 2.66
1319 1450 4.039488 TGATCATCATCATCGTCACCATCA 59.961 41.667 0.00 0.00 33.80 3.07
1320 1451 4.563061 TGATCATCATCATCGTCACCATC 58.437 43.478 0.00 0.00 33.80 3.51
1321 1452 4.612264 TGATCATCATCATCGTCACCAT 57.388 40.909 0.00 0.00 33.80 3.55
1322 1453 4.202284 ACATGATCATCATCATCGTCACCA 60.202 41.667 4.86 0.00 45.26 4.17
1323 1454 4.151867 CACATGATCATCATCATCGTCACC 59.848 45.833 4.86 0.00 45.26 4.02
1324 1455 4.748600 ACACATGATCATCATCATCGTCAC 59.251 41.667 4.86 0.00 45.26 3.67
1325 1456 4.952460 ACACATGATCATCATCATCGTCA 58.048 39.130 4.86 0.00 45.26 4.35
1326 1457 4.986659 TGACACATGATCATCATCATCGTC 59.013 41.667 4.86 10.22 45.26 4.20
1327 1458 4.748600 GTGACACATGATCATCATCATCGT 59.251 41.667 4.86 0.00 45.26 3.73
1328 1459 4.989168 AGTGACACATGATCATCATCATCG 59.011 41.667 4.86 0.00 45.26 3.84
1329 1460 5.989777 TGAGTGACACATGATCATCATCATC 59.010 40.000 4.86 9.43 45.26 2.92
1331 1462 5.347620 TGAGTGACACATGATCATCATCA 57.652 39.130 4.86 7.07 43.45 3.07
1332 1463 6.047231 TCTTGAGTGACACATGATCATCATC 58.953 40.000 4.86 4.44 34.28 2.92
1333 1464 5.985911 TCTTGAGTGACACATGATCATCAT 58.014 37.500 4.86 0.00 37.65 2.45
1341 1472 1.662629 GCGGATCTTGAGTGACACATG 59.337 52.381 8.59 0.00 0.00 3.21
1403 1541 2.227089 ATCCCGCAGACCTTGTCGAC 62.227 60.000 9.11 9.11 37.67 4.20
1462 1600 1.079057 GAACTTGGTCTCCCCGCTC 60.079 63.158 0.00 0.00 35.15 5.03
1516 1654 1.765904 GTGAGGAGAGGGAGGGAATTC 59.234 57.143 0.00 0.00 0.00 2.17
1519 1657 1.695065 TAGTGAGGAGAGGGAGGGAA 58.305 55.000 0.00 0.00 0.00 3.97
1564 1765 3.685139 AGGTCAGATCGATGTTGTTGT 57.315 42.857 0.54 0.00 0.00 3.32
1629 1830 9.950680 GGAACAATACACAAGAATAACATATGG 57.049 33.333 7.80 0.00 0.00 2.74
1666 1868 9.874205 CACAAGAATAACATATGGAATTGGTTT 57.126 29.630 7.80 0.00 0.00 3.27
1675 1877 9.950680 GGAACAATACACAAGAATAACATATGG 57.049 33.333 7.80 0.00 0.00 2.74
1712 1915 8.413229 CGGAAGAATAACATATGGAATTGGTTT 58.587 33.333 7.80 1.63 0.00 3.27
1718 1921 8.432805 AGAAGACGGAAGAATAACATATGGAAT 58.567 33.333 7.80 0.00 0.00 3.01
1721 1924 7.710907 TGAAGAAGACGGAAGAATAACATATGG 59.289 37.037 7.80 0.00 0.00 2.74
1725 1928 9.099454 GTTATGAAGAAGACGGAAGAATAACAT 57.901 33.333 0.00 0.00 31.46 2.71
1734 1937 4.935205 CACCATGTTATGAAGAAGACGGAA 59.065 41.667 0.00 0.00 0.00 4.30
1736 1939 3.063997 GCACCATGTTATGAAGAAGACGG 59.936 47.826 0.00 0.00 0.00 4.79
1737 1940 3.935203 AGCACCATGTTATGAAGAAGACG 59.065 43.478 0.00 0.00 0.00 4.18
1738 1941 4.095483 CCAGCACCATGTTATGAAGAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
1739 1942 4.019411 TCCAGCACCATGTTATGAAGAAGA 60.019 41.667 0.00 0.00 0.00 2.87
1740 1943 4.264253 TCCAGCACCATGTTATGAAGAAG 58.736 43.478 0.00 0.00 0.00 2.85
1754 1957 2.057137 TTGCAATAGGATCCAGCACC 57.943 50.000 15.82 0.00 34.56 5.01
1791 1994 0.833287 CCTCCAGACCCATCACGATT 59.167 55.000 0.00 0.00 0.00 3.34
1896 2099 7.496529 TTTGTTCTAAGAATCCTTGTCTGTG 57.503 36.000 0.00 0.00 33.94 3.66
1918 2121 2.123726 GGGCATGGAGGCGGATTT 60.124 61.111 0.00 0.00 45.36 2.17
1962 2176 5.744666 TTAGAGTACAACAACAACAAGGC 57.255 39.130 0.00 0.00 0.00 4.35
1996 2213 5.007136 GCTAGTTTCAGCCAGTACATCATTC 59.993 44.000 0.00 0.00 35.40 2.67
2035 2252 5.628193 CACAAAAACAAGCTCTGCATAGAAG 59.372 40.000 2.78 0.00 31.21 2.85
2132 2354 4.339530 TGCTGAGTGACACTGATAGGATAC 59.660 45.833 14.14 0.00 0.00 2.24
2134 2356 3.131933 GTGCTGAGTGACACTGATAGGAT 59.868 47.826 14.14 0.00 33.92 3.24
2136 2358 2.495270 AGTGCTGAGTGACACTGATAGG 59.505 50.000 14.14 0.00 45.19 2.57
2153 2377 3.594134 AGAGTAAACATCTCAGCAGTGC 58.406 45.455 7.13 7.13 34.73 4.40
2177 2401 5.758784 GGAACGGAGGGAGTATTTTCTTATG 59.241 44.000 0.00 0.00 0.00 1.90
2189 2417 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2190 2418 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2191 2419 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2192 2420 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2193 2421 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2194 2422 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2195 2423 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2196 2424 2.981805 TCACGACGAGTAATTTGGAACG 59.018 45.455 0.00 0.00 0.00 3.95
2197 2425 3.737266 TGTCACGACGAGTAATTTGGAAC 59.263 43.478 0.00 0.00 0.00 3.62
2198 2426 3.737266 GTGTCACGACGAGTAATTTGGAA 59.263 43.478 0.00 0.00 0.00 3.53
2199 2427 3.243468 TGTGTCACGACGAGTAATTTGGA 60.243 43.478 0.00 0.00 0.00 3.53
2200 2428 3.054166 TGTGTCACGACGAGTAATTTGG 58.946 45.455 0.00 0.00 0.00 3.28
2201 2429 3.734231 AGTGTGTCACGACGAGTAATTTG 59.266 43.478 0.00 0.00 39.64 2.32
2202 2430 3.973657 AGTGTGTCACGACGAGTAATTT 58.026 40.909 0.00 0.00 39.64 1.82
2203 2431 3.637998 AGTGTGTCACGACGAGTAATT 57.362 42.857 0.00 0.00 39.64 1.40
2204 2432 4.393990 TGATAGTGTGTCACGACGAGTAAT 59.606 41.667 0.00 0.00 39.64 1.89
2205 2433 3.747529 TGATAGTGTGTCACGACGAGTAA 59.252 43.478 0.00 0.00 39.64 2.24
2206 2434 3.328505 TGATAGTGTGTCACGACGAGTA 58.671 45.455 0.00 0.00 39.64 2.59
2207 2435 2.148768 TGATAGTGTGTCACGACGAGT 58.851 47.619 0.00 0.00 39.64 4.18
2209 2437 4.573201 TGATATGATAGTGTGTCACGACGA 59.427 41.667 0.00 0.00 39.64 4.20
2210 2438 4.844267 TGATATGATAGTGTGTCACGACG 58.156 43.478 0.00 0.00 39.64 5.12
2211 2439 6.061231 TCTGATATGATAGTGTGTCACGAC 57.939 41.667 0.00 0.00 39.64 4.34
2212 2440 6.884280 ATCTGATATGATAGTGTGTCACGA 57.116 37.500 0.00 0.00 39.64 4.35
2213 2441 8.454106 TGATATCTGATATGATAGTGTGTCACG 58.546 37.037 14.60 0.00 39.64 4.35
2218 2446 9.747293 GGTCATGATATCTGATATGATAGTGTG 57.253 37.037 14.60 2.27 33.12 3.82
2222 2450 9.478768 GCTTGGTCATGATATCTGATATGATAG 57.521 37.037 14.60 7.07 33.12 2.08
2223 2451 9.210228 AGCTTGGTCATGATATCTGATATGATA 57.790 33.333 14.60 2.31 32.76 2.15
2252 2652 2.222663 CGTGACTCATGCTTCATGTTCG 60.223 50.000 6.68 0.74 41.98 3.95
2262 2662 0.108615 AGCTGTACCGTGACTCATGC 60.109 55.000 0.00 0.00 0.00 4.06
2266 2666 3.057736 TCACTTTAGCTGTACCGTGACTC 60.058 47.826 0.00 0.00 0.00 3.36
2268 2668 3.293311 TCACTTTAGCTGTACCGTGAC 57.707 47.619 0.00 0.00 0.00 3.67
2269 2669 3.257375 ACATCACTTTAGCTGTACCGTGA 59.743 43.478 0.00 2.55 36.06 4.35
2270 2670 3.585862 ACATCACTTTAGCTGTACCGTG 58.414 45.455 0.00 0.00 0.00 4.94
2271 2671 3.955650 ACATCACTTTAGCTGTACCGT 57.044 42.857 0.00 0.00 0.00 4.83
2272 2672 5.647589 TCTAACATCACTTTAGCTGTACCG 58.352 41.667 0.00 0.00 0.00 4.02
2273 2673 8.494016 AATTCTAACATCACTTTAGCTGTACC 57.506 34.615 0.00 0.00 0.00 3.34
2276 2676 9.289782 AGAAAATTCTAACATCACTTTAGCTGT 57.710 29.630 0.00 0.00 35.34 4.40
2282 2682 8.515414 GCCAGTAGAAAATTCTAACATCACTTT 58.485 33.333 4.52 0.00 41.12 2.66
2283 2683 7.665559 TGCCAGTAGAAAATTCTAACATCACTT 59.334 33.333 4.52 0.00 41.12 3.16
2285 2685 7.377766 TGCCAGTAGAAAATTCTAACATCAC 57.622 36.000 4.52 0.00 41.12 3.06
2286 2686 7.994425 TTGCCAGTAGAAAATTCTAACATCA 57.006 32.000 4.52 0.08 41.12 3.07
2287 2687 7.433425 GCATTGCCAGTAGAAAATTCTAACATC 59.567 37.037 4.52 0.00 41.12 3.06
2288 2688 7.260603 GCATTGCCAGTAGAAAATTCTAACAT 58.739 34.615 4.52 0.00 41.12 2.71
2289 2689 6.620678 GCATTGCCAGTAGAAAATTCTAACA 58.379 36.000 4.52 0.00 41.12 2.41
2307 2707 3.070576 GGGTCTGGGTGGCATTGC 61.071 66.667 0.00 0.00 0.00 3.56
2308 2708 1.000739 ATGGGTCTGGGTGGCATTG 59.999 57.895 0.00 0.00 0.00 2.82
2309 2709 1.000739 CATGGGTCTGGGTGGCATT 59.999 57.895 0.00 0.00 0.00 3.56
2310 2710 2.685366 CATGGGTCTGGGTGGCAT 59.315 61.111 0.00 0.00 0.00 4.40
2311 2711 4.365111 GCATGGGTCTGGGTGGCA 62.365 66.667 0.00 0.00 0.00 4.92
2312 2712 2.679342 TAGCATGGGTCTGGGTGGC 61.679 63.158 0.00 0.00 0.00 5.01
2316 2716 0.107508 CACAGTAGCATGGGTCTGGG 60.108 60.000 0.00 0.00 32.92 4.45
2317 2717 0.904649 TCACAGTAGCATGGGTCTGG 59.095 55.000 0.00 0.00 32.92 3.86
2319 2719 1.198713 CCTCACAGTAGCATGGGTCT 58.801 55.000 0.00 0.00 0.00 3.85
2320 2720 1.195115 TCCTCACAGTAGCATGGGTC 58.805 55.000 0.00 0.00 0.00 4.46
2322 2722 4.630644 AATATCCTCACAGTAGCATGGG 57.369 45.455 0.00 0.00 0.00 4.00
2323 2723 5.614308 TGAAATATCCTCACAGTAGCATGG 58.386 41.667 0.00 0.00 0.00 3.66
2325 2725 6.098838 TCACTGAAATATCCTCACAGTAGCAT 59.901 38.462 0.00 0.00 39.33 3.79
2326 2726 5.422012 TCACTGAAATATCCTCACAGTAGCA 59.578 40.000 0.00 0.00 39.33 3.49
2327 2727 5.751028 GTCACTGAAATATCCTCACAGTAGC 59.249 44.000 0.00 0.00 39.33 3.58
2328 2728 7.106439 AGTCACTGAAATATCCTCACAGTAG 57.894 40.000 0.00 0.00 39.33 2.57
2329 2729 7.323420 CAAGTCACTGAAATATCCTCACAGTA 58.677 38.462 0.00 0.00 39.33 2.74
2330 2730 6.169094 CAAGTCACTGAAATATCCTCACAGT 58.831 40.000 0.00 0.00 41.52 3.55
2331 2731 5.583854 CCAAGTCACTGAAATATCCTCACAG 59.416 44.000 0.00 0.00 35.14 3.66
2332 2732 5.013079 ACCAAGTCACTGAAATATCCTCACA 59.987 40.000 0.00 0.00 0.00 3.58
2334 2734 5.762179 ACCAAGTCACTGAAATATCCTCA 57.238 39.130 0.00 0.00 0.00 3.86
2335 2735 7.987458 TGATTACCAAGTCACTGAAATATCCTC 59.013 37.037 0.00 0.00 0.00 3.71
2336 2736 7.770897 GTGATTACCAAGTCACTGAAATATCCT 59.229 37.037 0.00 0.00 41.10 3.24
2337 2737 7.920738 GTGATTACCAAGTCACTGAAATATCC 58.079 38.462 0.00 0.00 41.10 2.59
2347 2747 7.648142 TCAAATTTGAGTGATTACCAAGTCAC 58.352 34.615 16.91 0.00 43.85 3.67
2349 2749 7.970614 GGATCAAATTTGAGTGATTACCAAGTC 59.029 37.037 24.17 12.53 41.08 3.01
2350 2750 7.671398 AGGATCAAATTTGAGTGATTACCAAGT 59.329 33.333 24.17 4.59 41.08 3.16
2351 2751 7.972277 CAGGATCAAATTTGAGTGATTACCAAG 59.028 37.037 24.17 11.58 41.08 3.61
2353 2753 6.947733 ACAGGATCAAATTTGAGTGATTACCA 59.052 34.615 24.17 0.00 41.08 3.25
2354 2754 7.121168 TGACAGGATCAAATTTGAGTGATTACC 59.879 37.037 24.17 16.70 41.08 2.85
2355 2755 8.044060 TGACAGGATCAAATTTGAGTGATTAC 57.956 34.615 24.17 9.57 41.08 1.89
2356 2756 7.148188 GCTGACAGGATCAAATTTGAGTGATTA 60.148 37.037 24.17 12.25 41.08 1.75
2358 2758 5.125097 GCTGACAGGATCAAATTTGAGTGAT 59.875 40.000 24.17 9.19 41.08 3.06
2360 2760 4.380233 GGCTGACAGGATCAAATTTGAGTG 60.380 45.833 24.17 21.30 41.08 3.51
2362 2762 3.760151 TGGCTGACAGGATCAAATTTGAG 59.240 43.478 24.17 13.90 41.08 3.02
2363 2763 3.765381 TGGCTGACAGGATCAAATTTGA 58.235 40.909 22.52 22.52 42.14 2.69
2364 2764 4.524316 TTGGCTGACAGGATCAAATTTG 57.476 40.909 12.15 12.15 36.69 2.32
2365 2765 4.834496 TCTTTGGCTGACAGGATCAAATTT 59.166 37.500 4.26 0.00 36.69 1.82
2366 2766 4.410099 TCTTTGGCTGACAGGATCAAATT 58.590 39.130 4.26 0.00 36.69 1.82
2367 2767 4.038271 TCTTTGGCTGACAGGATCAAAT 57.962 40.909 4.26 0.00 36.69 2.32
2368 2768 3.507162 TCTTTGGCTGACAGGATCAAA 57.493 42.857 4.26 0.00 36.69 2.69
2370 2770 3.507162 TTTCTTTGGCTGACAGGATCA 57.493 42.857 4.26 0.00 35.45 2.92
2371 2771 4.381292 CCATTTTCTTTGGCTGACAGGATC 60.381 45.833 4.26 0.00 0.00 3.36
2372 2772 3.512724 CCATTTTCTTTGGCTGACAGGAT 59.487 43.478 4.26 0.00 0.00 3.24
2373 2773 2.892852 CCATTTTCTTTGGCTGACAGGA 59.107 45.455 4.26 0.00 0.00 3.86
2374 2774 2.629617 ACCATTTTCTTTGGCTGACAGG 59.370 45.455 4.26 0.00 37.81 4.00
2376 2776 6.418057 AAATACCATTTTCTTTGGCTGACA 57.582 33.333 0.00 0.00 37.81 3.58
2378 2778 6.951198 TCCTAAATACCATTTTCTTTGGCTGA 59.049 34.615 0.00 0.00 37.81 4.26
2380 2780 6.723977 TGTCCTAAATACCATTTTCTTTGGCT 59.276 34.615 0.00 0.00 37.81 4.75
2381 2781 6.930731 TGTCCTAAATACCATTTTCTTTGGC 58.069 36.000 0.00 0.00 37.81 4.52
2382 2782 7.178451 ACCTGTCCTAAATACCATTTTCTTTGG 59.822 37.037 0.00 0.00 40.26 3.28
2383 2783 8.028938 CACCTGTCCTAAATACCATTTTCTTTG 58.971 37.037 0.00 0.00 0.00 2.77
2432 2832 2.498078 CCTCTGTTTCTAGTCCCAGGTC 59.502 54.545 0.00 0.00 0.00 3.85
2676 3080 1.210478 CTGAGTAACATGGGTCTGGGG 59.790 57.143 0.00 0.00 0.00 4.96
2689 3093 6.768861 TGAAAACCGAAATTTCCTCTGAGTAA 59.231 34.615 12.54 0.00 36.23 2.24
2789 3193 3.326747 GTTAACACGATCCTGTGCTTCT 58.673 45.455 0.00 0.00 43.74 2.85
2815 3219 4.212425 CCTACACGTCTCTACTGCAGATAG 59.788 50.000 23.35 17.38 31.13 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.