Multiple sequence alignment - TraesCS5D01G565200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G565200 chr5D 100.000 4412 0 0 1 4412 563762374 563757963 0.000000e+00 8148.0
1 TraesCS5D01G565200 chr5D 100.000 3987 0 0 4659 8645 563757716 563753730 0.000000e+00 7363.0
2 TraesCS5D01G565200 chr4A 96.358 4173 88 27 3 4164 608827649 608831768 0.000000e+00 6806.0
3 TraesCS5D01G565200 chr4A 94.146 1230 26 14 5556 6767 608832758 608833959 0.000000e+00 1831.0
4 TraesCS5D01G565200 chr4A 97.382 764 17 2 4700 5461 608831900 608832662 0.000000e+00 1297.0
5 TraesCS5D01G565200 chr4A 90.716 754 22 15 7674 8384 608834670 608835418 0.000000e+00 961.0
6 TraesCS5D01G565200 chr4A 90.971 731 32 12 6946 7645 608833947 608834674 0.000000e+00 953.0
7 TraesCS5D01G565200 chr4A 78.393 361 74 4 35 392 608827456 608827097 1.880000e-56 231.0
8 TraesCS5D01G565200 chr4A 97.015 134 4 0 4278 4411 608831768 608831901 8.730000e-55 226.0
9 TraesCS5D01G565200 chr4A 96.825 63 0 2 3359 3421 548780886 548780826 4.270000e-18 104.0
10 TraesCS5D01G565200 chr5B 92.253 4234 196 48 4 4164 706172413 706168239 0.000000e+00 5880.0
11 TraesCS5D01G565200 chr5B 93.026 1907 81 14 4881 6767 706167710 706165836 0.000000e+00 2737.0
12 TraesCS5D01G565200 chr5B 90.351 1710 82 34 6949 8593 706165845 706164154 0.000000e+00 2167.0
13 TraesCS5D01G565200 chr5B 79.301 372 65 8 6 366 706172569 706172939 5.180000e-62 250.0
14 TraesCS5D01G565200 chr5B 96.947 131 3 1 4283 4412 706168237 706168107 1.460000e-52 219.0
15 TraesCS5D01G565200 chr5B 92.414 145 7 1 4742 4882 706167936 706167792 4.090000e-48 204.0
16 TraesCS5D01G565200 chr5B 98.795 83 1 0 4661 4743 706168063 706167981 1.940000e-31 148.0
17 TraesCS5D01G565200 chr7D 91.919 198 9 6 6758 6953 627058778 627058586 3.980000e-68 270.0
18 TraesCS5D01G565200 chr7D 92.391 184 12 2 6768 6951 523278781 523278962 2.390000e-65 261.0
19 TraesCS5D01G565200 chr7D 91.743 109 9 0 6768 6876 28860706 28860598 1.500000e-32 152.0
20 TraesCS5D01G565200 chr7D 98.387 62 1 0 3356 3417 383900724 383900663 9.180000e-20 110.0
21 TraesCS5D01G565200 chr3D 92.517 147 10 1 6806 6951 609808170 609808316 8.790000e-50 209.0
22 TraesCS5D01G565200 chr3D 93.750 128 7 1 4162 4289 107670962 107671088 3.190000e-44 191.0
23 TraesCS5D01G565200 chr3D 93.151 73 1 4 3345 3416 138890590 138890659 4.270000e-18 104.0
24 TraesCS5D01G565200 chr2D 87.113 194 13 2 6768 6949 621636584 621636391 8.790000e-50 209.0
25 TraesCS5D01G565200 chr5A 95.385 130 4 2 4163 4292 689428126 689427999 1.140000e-48 206.0
26 TraesCS5D01G565200 chr6B 93.284 134 6 3 4156 4288 617675290 617675159 2.460000e-45 195.0
27 TraesCS5D01G565200 chr6B 95.652 46 0 2 6345 6390 16341349 16341392 1.200000e-08 73.1
28 TraesCS5D01G565200 chr4D 94.488 127 5 2 4155 4281 55352434 55352558 2.460000e-45 195.0
29 TraesCS5D01G565200 chr1A 95.122 123 5 1 4159 4281 208212529 208212650 8.860000e-45 193.0
30 TraesCS5D01G565200 chr2A 95.798 119 4 1 4163 4281 729162120 729162003 3.190000e-44 191.0
31 TraesCS5D01G565200 chr4B 94.355 124 6 1 4160 4283 564869465 564869587 1.150000e-43 189.0
32 TraesCS5D01G565200 chr7B 91.729 133 9 2 4153 4284 152473002 152472871 5.330000e-42 183.0
33 TraesCS5D01G565200 chr7B 98.333 60 1 0 3356 3415 378356183 378356124 1.190000e-18 106.0
34 TraesCS5D01G565200 chr7B 96.774 31 1 0 6345 6375 282330654 282330624 1.600000e-02 52.8
35 TraesCS5D01G565200 chr1D 90.141 142 9 5 4143 4281 184046383 184046522 6.900000e-41 180.0
36 TraesCS5D01G565200 chr3B 83.516 182 26 4 6769 6949 815959517 815959695 5.370000e-37 167.0
37 TraesCS5D01G565200 chr3B 95.522 67 3 0 3348 3414 816011900 816011834 3.300000e-19 108.0
38 TraesCS5D01G565200 chr7A 96.923 65 2 0 3356 3420 432685885 432685821 9.180000e-20 110.0
39 TraesCS5D01G565200 chr3A 94.118 68 3 1 3359 3426 614126433 614126499 1.540000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G565200 chr5D 563753730 563762374 8644 True 7755.500000 8148 100.000000 1 8645 2 chr5D.!!$R1 8644
1 TraesCS5D01G565200 chr4A 608827649 608835418 7769 False 2012.333333 6806 94.431333 3 8384 6 chr4A.!!$F1 8381
2 TraesCS5D01G565200 chr5B 706164154 706172413 8259 True 1892.500000 5880 93.964333 4 8593 6 chr5B.!!$R1 8589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 290 0.533531 CCCCGTCGCCTATAAAACCC 60.534 60.000 0.00 0.00 0.00 4.11 F
1507 1566 0.322975 TCTCCCTGCTCTCTTGCAAC 59.677 55.000 0.00 0.00 42.83 4.17 F
1692 1761 0.037326 CCTTAGCGCTTGTCTGTGGA 60.037 55.000 18.68 0.00 0.00 4.02 F
2134 2206 0.371301 CGATTGTCCAGCACGATGTG 59.629 55.000 0.00 0.00 36.51 3.21 F
3417 3509 2.186826 CCGGGCTGCCCTTTTATCG 61.187 63.158 33.39 18.68 42.67 2.92 F
4189 4285 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02 F
4201 4297 0.315251 GCTTGTCCCAAGCTTGTTCC 59.685 55.000 24.35 11.81 40.01 3.62 F
5327 5559 0.320073 TTTGGCGAGTCGTAGTTGGG 60.320 55.000 15.08 0.00 0.00 4.12 F
6789 7071 0.321996 TAATGCTACACACACGGGCA 59.678 50.000 0.00 0.00 37.32 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1656 0.035458 AAGCTGCACCACCAGAGTAC 59.965 55.000 1.02 0.0 34.77 2.73 R
3417 3509 2.037381 TCATGAGATGCAGGCAGAGATC 59.963 50.000 0.00 0.0 0.00 2.75 R
3491 3583 3.118592 ACTGTCTCGATTCTCCCAATTCC 60.119 47.826 0.00 0.0 0.00 3.01 R
3699 3794 0.537188 AATGACTGGGGTCGCTAGTG 59.463 55.000 10.76 0.0 44.83 2.74 R
4264 4360 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.0 0.00 4.30 R
5514 5751 3.108144 CAAGACAAACTGACGGCAAAAG 58.892 45.455 0.00 0.0 0.00 2.27 R
5632 5869 3.686227 TTCATGGCAATACCCCTCAAT 57.314 42.857 0.00 0.0 37.83 2.57 R
6793 7075 0.033601 TAGTCCGTAAAGCCCCCGTA 60.034 55.000 0.00 0.0 0.00 4.02 R
8366 8732 0.041576 GACAACGGAAAAGACGGCAC 60.042 55.000 0.00 0.0 35.23 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.016706 CCTGGACCCTTCGGCGTT 62.017 66.667 6.85 0.00 0.00 4.84
43 44 0.742990 CCTTCGGCGTTGCTCCATAA 60.743 55.000 6.85 0.00 0.00 1.90
94 95 7.941238 CCATATATTTCTCCACATCACTCCTTT 59.059 37.037 0.00 0.00 0.00 3.11
99 100 1.909302 TCCACATCACTCCTTTCCCTC 59.091 52.381 0.00 0.00 0.00 4.30
101 102 1.276421 CACATCACTCCTTTCCCTCGT 59.724 52.381 0.00 0.00 0.00 4.18
103 104 0.818296 ATCACTCCTTTCCCTCGTCG 59.182 55.000 0.00 0.00 0.00 5.12
111 112 1.117142 TTTCCCTCGTCGTCCACCTT 61.117 55.000 0.00 0.00 0.00 3.50
117 118 0.896479 TCGTCGTCCACCTTCCATCA 60.896 55.000 0.00 0.00 0.00 3.07
122 123 1.534729 GTCCACCTTCCATCACCAAC 58.465 55.000 0.00 0.00 0.00 3.77
131 132 5.366477 ACCTTCCATCACCAACATTTTTCTT 59.634 36.000 0.00 0.00 0.00 2.52
139 140 3.258123 ACCAACATTTTTCTTCGGGATGG 59.742 43.478 0.00 0.00 0.00 3.51
226 227 1.153920 CCGCATTAAACCCCGTTGC 60.154 57.895 0.00 0.00 0.00 4.17
231 232 2.139731 ATTAAACCCCGTTGCCCCGA 62.140 55.000 0.00 0.00 0.00 5.14
240 241 2.547026 GTTGCCCCGACAACGTAAT 58.453 52.632 0.00 0.00 40.45 1.89
287 290 0.533531 CCCCGTCGCCTATAAAACCC 60.534 60.000 0.00 0.00 0.00 4.11
316 319 2.048877 TCGACGCTCCGGAAAACC 60.049 61.111 5.23 0.00 0.00 3.27
363 366 8.437274 TCTAGAGTTTCCTCACCTAATCTTTT 57.563 34.615 0.00 0.00 40.40 2.27
374 378 1.490910 CTAATCTTTTCCGGGCCTCCT 59.509 52.381 0.84 0.00 0.00 3.69
376 380 0.914417 ATCTTTTCCGGGCCTCCTCA 60.914 55.000 0.84 0.00 0.00 3.86
378 382 3.268103 TTTTCCGGGCCTCCTCAGC 62.268 63.158 0.84 0.00 0.00 4.26
438 442 0.608640 GAAGGCAAGAAGAGTCCGGA 59.391 55.000 0.00 0.00 0.00 5.14
463 467 0.811616 ACCTGCGAGAAATCGGCATC 60.812 55.000 0.00 0.00 0.00 3.91
488 492 3.327404 GGCGGGGAAGAAGGGACA 61.327 66.667 0.00 0.00 0.00 4.02
735 748 2.776072 GATTTGCACGGACGGACG 59.224 61.111 0.00 0.00 40.31 4.79
736 749 2.736682 GATTTGCACGGACGGACGG 61.737 63.158 6.00 0.00 38.39 4.79
737 750 3.229156 ATTTGCACGGACGGACGGA 62.229 57.895 6.00 0.00 38.39 4.69
738 751 4.651008 TTGCACGGACGGACGGAC 62.651 66.667 6.00 0.00 38.39 4.79
863 881 4.755507 GAGGGGTCCCGTCCGTCT 62.756 72.222 18.49 0.30 41.95 4.18
978 1013 3.378331 GATCTCGTCGTCGCGTGGT 62.378 63.158 5.77 3.48 36.96 4.16
1184 1219 2.956132 TCTCTCCACTCCATCTCCATC 58.044 52.381 0.00 0.00 0.00 3.51
1187 1222 2.245806 TCTCCACTCCATCTCCATCTCA 59.754 50.000 0.00 0.00 0.00 3.27
1390 1435 9.689501 TTTCGTTTCCAAAGGGATTAGTATTAT 57.310 29.630 0.00 0.00 44.48 1.28
1391 1436 9.689501 TTCGTTTCCAAAGGGATTAGTATTATT 57.310 29.630 0.00 0.00 44.48 1.40
1507 1566 0.322975 TCTCCCTGCTCTCTTGCAAC 59.677 55.000 0.00 0.00 42.83 4.17
1516 1575 3.850098 CTCTTGCAACGGGGGCTGT 62.850 63.158 0.00 0.00 0.00 4.40
1523 1582 1.878102 GCAACGGGGGCTGTAGATATG 60.878 57.143 0.00 0.00 0.00 1.78
1692 1761 0.037326 CCTTAGCGCTTGTCTGTGGA 60.037 55.000 18.68 0.00 0.00 4.02
1694 1763 0.670546 TTAGCGCTTGTCTGTGGAGC 60.671 55.000 18.68 0.00 0.00 4.70
1699 1768 2.031012 TTGTCTGTGGAGCTGGCG 59.969 61.111 0.00 0.00 0.00 5.69
1864 1936 6.610075 ACTGCTTTTTAAATCCCATGATGT 57.390 33.333 0.00 0.00 0.00 3.06
1865 1937 7.008021 ACTGCTTTTTAAATCCCATGATGTT 57.992 32.000 0.00 0.00 0.00 2.71
1866 1938 6.875195 ACTGCTTTTTAAATCCCATGATGTTG 59.125 34.615 0.00 0.00 0.00 3.33
1932 2004 2.086869 CATTTGCCGATGTCTCCAGTT 58.913 47.619 0.00 0.00 0.00 3.16
1944 2016 1.228124 TCCAGTTGAAGGTTGCCCG 60.228 57.895 0.00 0.00 35.12 6.13
2106 2178 6.721318 TCTCCATTCTGCTTTATAAGGTTGT 58.279 36.000 0.00 0.00 0.00 3.32
2134 2206 0.371301 CGATTGTCCAGCACGATGTG 59.629 55.000 0.00 0.00 36.51 3.21
2774 2857 7.410174 TCTAAAGTTCATGTACCCATGGAATT 58.590 34.615 15.22 0.00 44.60 2.17
2948 3031 5.574970 AGGTTCTCCAAGAATTTCAGAGT 57.425 39.130 0.00 0.00 36.50 3.24
3417 3509 2.186826 CCGGGCTGCCCTTTTATCG 61.187 63.158 33.39 18.68 42.67 2.92
3491 3583 5.662456 TGTTCATAATTGCATTGGGACATG 58.338 37.500 0.00 0.00 39.30 3.21
3715 3811 0.824759 ATTCACTAGCGACCCCAGTC 59.175 55.000 0.00 0.00 39.83 3.51
3746 3842 2.171237 TGCTGTGTGGATCATTCTAGGG 59.829 50.000 0.00 0.00 0.00 3.53
3747 3843 2.486191 GCTGTGTGGATCATTCTAGGGG 60.486 54.545 0.00 0.00 0.00 4.79
3796 3892 1.702401 TGTCCTGGTTCTGCATGGTTA 59.298 47.619 0.00 0.00 0.00 2.85
3797 3893 2.290260 TGTCCTGGTTCTGCATGGTTAG 60.290 50.000 0.00 0.00 0.00 2.34
3798 3894 2.027192 GTCCTGGTTCTGCATGGTTAGA 60.027 50.000 0.00 0.00 0.00 2.10
4171 4267 2.546652 ACTTCACTAGTACCCCCTCC 57.453 55.000 0.00 0.00 34.56 4.30
4172 4268 1.341778 ACTTCACTAGTACCCCCTCCG 60.342 57.143 0.00 0.00 34.56 4.63
4173 4269 0.706433 TTCACTAGTACCCCCTCCGT 59.294 55.000 0.00 0.00 0.00 4.69
4174 4270 0.257039 TCACTAGTACCCCCTCCGTC 59.743 60.000 0.00 0.00 0.00 4.79
4175 4271 0.754587 CACTAGTACCCCCTCCGTCC 60.755 65.000 0.00 0.00 0.00 4.79
4176 4272 1.527844 CTAGTACCCCCTCCGTCCG 60.528 68.421 0.00 0.00 0.00 4.79
4177 4273 1.987807 CTAGTACCCCCTCCGTCCGA 61.988 65.000 0.00 0.00 0.00 4.55
4178 4274 1.570857 TAGTACCCCCTCCGTCCGAA 61.571 60.000 0.00 0.00 0.00 4.30
4179 4275 1.984026 GTACCCCCTCCGTCCGAAA 60.984 63.158 0.00 0.00 0.00 3.46
4180 4276 1.229145 TACCCCCTCCGTCCGAAAA 60.229 57.895 0.00 0.00 0.00 2.29
4181 4277 0.835543 TACCCCCTCCGTCCGAAAAA 60.836 55.000 0.00 0.00 0.00 1.94
4182 4278 1.376812 CCCCCTCCGTCCGAAAAAG 60.377 63.158 0.00 0.00 0.00 2.27
4183 4279 2.038837 CCCCTCCGTCCGAAAAAGC 61.039 63.158 0.00 0.00 0.00 3.51
4184 4280 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
4185 4281 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
4186 4282 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
4187 4283 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
4188 4284 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
4189 4285 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
4190 4286 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
4191 4287 1.314730 GTCCGAAAAAGCTTGTCCCA 58.685 50.000 0.00 0.00 0.00 4.37
4192 4288 1.679153 GTCCGAAAAAGCTTGTCCCAA 59.321 47.619 0.00 0.00 0.00 4.12
4193 4289 1.953686 TCCGAAAAAGCTTGTCCCAAG 59.046 47.619 0.00 0.00 0.00 3.61
4194 4290 1.602920 CCGAAAAAGCTTGTCCCAAGC 60.603 52.381 18.69 18.69 43.31 4.01
4200 4296 3.873805 GCTTGTCCCAAGCTTGTTC 57.126 52.632 24.35 14.17 40.01 3.18
4201 4297 0.315251 GCTTGTCCCAAGCTTGTTCC 59.685 55.000 24.35 11.81 40.01 3.62
4202 4298 1.986882 CTTGTCCCAAGCTTGTTCCT 58.013 50.000 24.35 0.00 0.00 3.36
4203 4299 1.882623 CTTGTCCCAAGCTTGTTCCTC 59.117 52.381 24.35 10.65 0.00 3.71
4204 4300 0.843309 TGTCCCAAGCTTGTTCCTCA 59.157 50.000 24.35 12.85 0.00 3.86
4205 4301 1.214175 TGTCCCAAGCTTGTTCCTCAA 59.786 47.619 24.35 1.41 34.61 3.02
4206 4302 2.306847 GTCCCAAGCTTGTTCCTCAAA 58.693 47.619 24.35 0.00 35.48 2.69
4207 4303 2.893489 GTCCCAAGCTTGTTCCTCAAAT 59.107 45.455 24.35 0.00 35.48 2.32
4208 4304 2.892852 TCCCAAGCTTGTTCCTCAAATG 59.107 45.455 24.35 5.47 35.48 2.32
4209 4305 2.028748 CCCAAGCTTGTTCCTCAAATGG 60.029 50.000 24.35 10.71 35.48 3.16
4210 4306 2.892852 CCAAGCTTGTTCCTCAAATGGA 59.107 45.455 24.35 0.00 36.92 3.41
4211 4307 3.512724 CCAAGCTTGTTCCTCAAATGGAT 59.487 43.478 24.35 0.00 36.92 3.41
4212 4308 4.491676 CAAGCTTGTTCCTCAAATGGATG 58.508 43.478 18.65 0.00 35.83 3.51
4213 4309 3.771216 AGCTTGTTCCTCAAATGGATGT 58.229 40.909 0.00 0.00 35.83 3.06
4214 4310 4.922206 AGCTTGTTCCTCAAATGGATGTA 58.078 39.130 0.00 0.00 35.83 2.29
4215 4311 5.513233 AGCTTGTTCCTCAAATGGATGTAT 58.487 37.500 0.00 0.00 35.83 2.29
4216 4312 5.591877 AGCTTGTTCCTCAAATGGATGTATC 59.408 40.000 0.00 0.00 35.83 2.24
4217 4313 5.591877 GCTTGTTCCTCAAATGGATGTATCT 59.408 40.000 0.00 0.00 35.83 1.98
4218 4314 6.767902 GCTTGTTCCTCAAATGGATGTATCTA 59.232 38.462 0.00 0.00 35.83 1.98
4219 4315 7.041508 GCTTGTTCCTCAAATGGATGTATCTAG 60.042 40.741 0.00 0.00 35.83 2.43
4220 4316 6.291377 TGTTCCTCAAATGGATGTATCTAGC 58.709 40.000 0.00 0.00 35.83 3.42
4221 4317 6.126796 TGTTCCTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 35.83 3.49
4222 4318 5.858381 TCCTCAAATGGATGTATCTAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
4223 4319 5.604231 TCCTCAAATGGATGTATCTAGCACT 59.396 40.000 0.00 0.00 0.00 4.40
4224 4320 6.782494 TCCTCAAATGGATGTATCTAGCACTA 59.218 38.462 0.00 0.00 0.00 2.74
4225 4321 7.455953 TCCTCAAATGGATGTATCTAGCACTAT 59.544 37.037 0.00 0.00 0.00 2.12
4226 4322 7.763528 CCTCAAATGGATGTATCTAGCACTATC 59.236 40.741 0.00 0.00 0.00 2.08
4227 4323 8.427902 TCAAATGGATGTATCTAGCACTATCT 57.572 34.615 0.00 0.00 0.00 1.98
4228 4324 8.874156 TCAAATGGATGTATCTAGCACTATCTT 58.126 33.333 0.00 0.00 0.00 2.40
4229 4325 8.933807 CAAATGGATGTATCTAGCACTATCTTG 58.066 37.037 0.00 0.00 0.00 3.02
4230 4326 6.596309 TGGATGTATCTAGCACTATCTTGG 57.404 41.667 0.00 0.00 0.00 3.61
4231 4327 6.077993 TGGATGTATCTAGCACTATCTTGGT 58.922 40.000 0.00 0.00 0.00 3.67
4232 4328 6.015095 TGGATGTATCTAGCACTATCTTGGTG 60.015 42.308 0.00 0.00 37.70 4.17
4244 4340 6.393990 CACTATCTTGGTGCTAGATACATCC 58.606 44.000 0.00 0.00 34.35 3.51
4245 4341 6.015095 CACTATCTTGGTGCTAGATACATCCA 60.015 42.308 0.00 0.00 34.35 3.41
4246 4342 6.728164 ACTATCTTGGTGCTAGATACATCCAT 59.272 38.462 0.00 0.00 34.35 3.41
4247 4343 5.894298 TCTTGGTGCTAGATACATCCATT 57.106 39.130 0.00 0.00 0.00 3.16
4248 4344 6.252599 TCTTGGTGCTAGATACATCCATTT 57.747 37.500 0.00 0.00 0.00 2.32
4249 4345 6.057533 TCTTGGTGCTAGATACATCCATTTG 58.942 40.000 0.00 0.00 0.00 2.32
4250 4346 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
4251 4347 6.191657 TGGTGCTAGATACATCCATTTGAT 57.808 37.500 0.00 0.00 0.00 2.57
4337 4434 7.173218 TCAAACAATCTTCCACTATGACAGTTC 59.827 37.037 0.00 0.00 34.26 3.01
5064 5296 5.095490 CGGCAAACTTATGGAAGAAATGAC 58.905 41.667 0.00 0.00 36.45 3.06
5165 5397 2.023673 TGCAGTTTGGGTTCAGTCTTG 58.976 47.619 0.00 0.00 0.00 3.02
5209 5441 5.815740 TCTGAGTTTGGTTTGACAGACTTAC 59.184 40.000 0.00 0.00 36.12 2.34
5327 5559 0.320073 TTTGGCGAGTCGTAGTTGGG 60.320 55.000 15.08 0.00 0.00 4.12
5437 5669 0.681175 AGCTTTGTGACCCATTTGCC 59.319 50.000 0.00 0.00 0.00 4.52
5441 5673 0.468214 TTGTGACCCATTTGCCCGAA 60.468 50.000 0.00 0.00 0.00 4.30
5447 5679 2.758423 GACCCATTTGCCCGAATAAGTT 59.242 45.455 0.00 0.00 0.00 2.66
5448 5680 3.169908 ACCCATTTGCCCGAATAAGTTT 58.830 40.909 0.00 0.00 0.00 2.66
5552 5789 1.506028 TTGTTCATCCCCAGGTCCCC 61.506 60.000 0.00 0.00 0.00 4.81
5593 5830 6.468333 TGATTTATGTGGCAATGCACTAAT 57.532 33.333 7.79 5.60 0.00 1.73
5632 5869 1.607225 AGGCCACCCCTTATGAATCA 58.393 50.000 5.01 0.00 43.06 2.57
5680 5917 6.157211 ACTCGAAACTGGTATTTCTACAGTG 58.843 40.000 0.00 0.00 36.59 3.66
5702 5939 5.237127 GTGCCAATCATCTATTCATCGTCAA 59.763 40.000 0.00 0.00 0.00 3.18
5887 6127 6.099269 ACTTCAAGAACTCCACTGGTAGTTTA 59.901 38.462 11.81 1.17 36.10 2.01
6125 6380 5.098211 GCTTGTATCTCCAAATTCTTGTGC 58.902 41.667 0.00 0.00 0.00 4.57
6127 6382 6.500684 TTGTATCTCCAAATTCTTGTGCTC 57.499 37.500 0.00 0.00 0.00 4.26
6138 6393 6.566197 AATTCTTGTGCTCTTGAGGTTTAG 57.434 37.500 0.00 0.00 0.00 1.85
6358 6614 3.389983 TGTTTGCCACTACCTCTGTAACT 59.610 43.478 0.00 0.00 0.00 2.24
6359 6615 4.589798 TGTTTGCCACTACCTCTGTAACTA 59.410 41.667 0.00 0.00 0.00 2.24
6360 6616 5.070714 TGTTTGCCACTACCTCTGTAACTAA 59.929 40.000 0.00 0.00 0.00 2.24
6361 6617 5.811796 TTGCCACTACCTCTGTAACTAAA 57.188 39.130 0.00 0.00 0.00 1.85
6362 6618 6.368779 TTGCCACTACCTCTGTAACTAAAT 57.631 37.500 0.00 0.00 0.00 1.40
6363 6619 7.484993 TTGCCACTACCTCTGTAACTAAATA 57.515 36.000 0.00 0.00 0.00 1.40
6364 6620 7.670605 TGCCACTACCTCTGTAACTAAATAT 57.329 36.000 0.00 0.00 0.00 1.28
6365 6621 7.497595 TGCCACTACCTCTGTAACTAAATATG 58.502 38.462 0.00 0.00 0.00 1.78
6366 6622 7.343574 TGCCACTACCTCTGTAACTAAATATGA 59.656 37.037 0.00 0.00 0.00 2.15
6367 6623 7.868415 GCCACTACCTCTGTAACTAAATATGAG 59.132 40.741 0.00 0.00 0.00 2.90
6368 6624 9.132923 CCACTACCTCTGTAACTAAATATGAGA 57.867 37.037 0.00 0.00 0.00 3.27
6369 6625 9.953697 CACTACCTCTGTAACTAAATATGAGAC 57.046 37.037 0.00 0.00 0.00 3.36
6370 6626 8.838365 ACTACCTCTGTAACTAAATATGAGACG 58.162 37.037 0.00 0.00 0.00 4.18
6371 6627 7.642082 ACCTCTGTAACTAAATATGAGACGT 57.358 36.000 0.00 0.00 0.00 4.34
6372 6628 8.064336 ACCTCTGTAACTAAATATGAGACGTT 57.936 34.615 0.00 0.00 0.00 3.99
6373 6629 8.529476 ACCTCTGTAACTAAATATGAGACGTTT 58.471 33.333 0.00 0.00 0.00 3.60
6374 6630 9.367444 CCTCTGTAACTAAATATGAGACGTTTT 57.633 33.333 0.00 0.00 0.00 2.43
6436 6714 6.093495 GCAGTTTTGCTGGTGACTTATGTATA 59.907 38.462 0.00 0.00 46.95 1.47
6437 6715 7.201732 GCAGTTTTGCTGGTGACTTATGTATAT 60.202 37.037 0.00 0.00 46.95 0.86
6620 6899 6.491394 TGAGTTTATTTGTCCAACGACTTTG 58.509 36.000 0.00 0.00 39.94 2.77
6770 7052 9.690913 TGAAATCTGGATTGATATTCAAAGAGT 57.309 29.630 0.00 0.00 40.12 3.24
6775 7057 9.060347 TCTGGATTGATATTCAAAGAGTAATGC 57.940 33.333 0.00 0.00 40.12 3.56
6776 7058 8.985315 TGGATTGATATTCAAAGAGTAATGCT 57.015 30.769 0.00 0.00 40.12 3.79
6781 7063 9.665719 TTGATATTCAAAGAGTAATGCTACACA 57.334 29.630 0.00 0.00 32.71 3.72
6782 7064 9.098355 TGATATTCAAAGAGTAATGCTACACAC 57.902 33.333 0.00 0.00 0.00 3.82
6783 7065 9.098355 GATATTCAAAGAGTAATGCTACACACA 57.902 33.333 0.00 0.00 0.00 3.72
6784 7066 6.539649 TTCAAAGAGTAATGCTACACACAC 57.460 37.500 0.00 0.00 0.00 3.82
6785 7067 4.684242 TCAAAGAGTAATGCTACACACACG 59.316 41.667 0.00 0.00 0.00 4.49
6786 7068 3.232213 AGAGTAATGCTACACACACGG 57.768 47.619 0.00 0.00 0.00 4.94
6787 7069 2.094182 AGAGTAATGCTACACACACGGG 60.094 50.000 0.00 0.00 0.00 5.28
6788 7070 0.725117 GTAATGCTACACACACGGGC 59.275 55.000 0.00 0.00 0.00 6.13
6789 7071 0.321996 TAATGCTACACACACGGGCA 59.678 50.000 0.00 0.00 37.32 5.36
6790 7072 1.234615 AATGCTACACACACGGGCAC 61.235 55.000 0.00 0.00 35.72 5.01
6791 7073 2.030562 GCTACACACACGGGCACT 59.969 61.111 0.00 0.00 0.00 4.40
6792 7074 1.597027 GCTACACACACGGGCACTT 60.597 57.895 0.00 0.00 0.00 3.16
6793 7075 1.164041 GCTACACACACGGGCACTTT 61.164 55.000 0.00 0.00 0.00 2.66
6794 7076 1.874739 GCTACACACACGGGCACTTTA 60.875 52.381 0.00 0.00 0.00 1.85
6795 7077 1.796459 CTACACACACGGGCACTTTAC 59.204 52.381 0.00 0.00 0.00 2.01
6796 7078 1.155424 ACACACACGGGCACTTTACG 61.155 55.000 0.00 0.00 0.00 3.18
6797 7079 1.595929 ACACACGGGCACTTTACGG 60.596 57.895 0.00 0.00 0.00 4.02
6798 7080 2.031465 ACACGGGCACTTTACGGG 59.969 61.111 0.00 0.00 37.00 5.28
6799 7081 2.744709 CACGGGCACTTTACGGGG 60.745 66.667 0.00 0.00 0.00 5.73
6800 7082 4.024545 ACGGGCACTTTACGGGGG 62.025 66.667 0.00 0.00 0.00 5.40
6802 7084 4.043100 GGGCACTTTACGGGGGCT 62.043 66.667 0.00 0.00 0.00 5.19
6803 7085 2.035155 GGCACTTTACGGGGGCTT 59.965 61.111 0.00 0.00 0.00 4.35
6804 7086 1.605451 GGCACTTTACGGGGGCTTT 60.605 57.895 0.00 0.00 0.00 3.51
6805 7087 0.322726 GGCACTTTACGGGGGCTTTA 60.323 55.000 0.00 0.00 0.00 1.85
6806 7088 0.806868 GCACTTTACGGGGGCTTTAC 59.193 55.000 0.00 0.00 0.00 2.01
6807 7089 1.081094 CACTTTACGGGGGCTTTACG 58.919 55.000 0.00 0.00 0.00 3.18
6808 7090 0.036105 ACTTTACGGGGGCTTTACGG 60.036 55.000 0.00 0.00 0.00 4.02
6809 7091 0.249955 CTTTACGGGGGCTTTACGGA 59.750 55.000 0.00 0.00 0.00 4.69
6810 7092 0.036483 TTTACGGGGGCTTTACGGAC 60.036 55.000 0.00 0.00 0.00 4.79
6811 7093 0.904394 TTACGGGGGCTTTACGGACT 60.904 55.000 0.00 0.00 0.00 3.85
6812 7094 0.033601 TACGGGGGCTTTACGGACTA 60.034 55.000 0.00 0.00 0.00 2.59
6813 7095 0.904394 ACGGGGGCTTTACGGACTAA 60.904 55.000 0.00 0.00 0.00 2.24
6814 7096 0.466963 CGGGGGCTTTACGGACTAAT 59.533 55.000 0.00 0.00 0.00 1.73
6815 7097 1.134310 CGGGGGCTTTACGGACTAATT 60.134 52.381 0.00 0.00 0.00 1.40
6816 7098 2.102925 CGGGGGCTTTACGGACTAATTA 59.897 50.000 0.00 0.00 0.00 1.40
6817 7099 3.736720 GGGGGCTTTACGGACTAATTAG 58.263 50.000 11.05 11.05 0.00 1.73
6818 7100 3.389002 GGGGGCTTTACGGACTAATTAGA 59.611 47.826 19.38 0.00 0.00 2.10
6819 7101 4.502777 GGGGGCTTTACGGACTAATTAGAG 60.503 50.000 19.38 11.59 0.00 2.43
6820 7102 4.343239 GGGGCTTTACGGACTAATTAGAGA 59.657 45.833 19.38 0.00 0.00 3.10
6821 7103 5.011840 GGGGCTTTACGGACTAATTAGAGAT 59.988 44.000 19.38 0.00 0.00 2.75
6822 7104 6.464039 GGGGCTTTACGGACTAATTAGAGATT 60.464 42.308 19.38 0.00 0.00 2.40
6823 7105 7.256083 GGGGCTTTACGGACTAATTAGAGATTA 60.256 40.741 19.38 2.63 0.00 1.75
6824 7106 8.146412 GGGCTTTACGGACTAATTAGAGATTAA 58.854 37.037 19.38 8.03 0.00 1.40
6825 7107 9.708092 GGCTTTACGGACTAATTAGAGATTAAT 57.292 33.333 19.38 0.00 0.00 1.40
6828 7110 9.485206 TTTACGGACTAATTAGAGATTAATGGC 57.515 33.333 19.38 0.00 0.00 4.40
6829 7111 7.304497 ACGGACTAATTAGAGATTAATGGCT 57.696 36.000 19.38 0.00 0.00 4.75
6830 7112 7.155328 ACGGACTAATTAGAGATTAATGGCTG 58.845 38.462 19.38 0.00 0.00 4.85
6831 7113 7.155328 CGGACTAATTAGAGATTAATGGCTGT 58.845 38.462 19.38 0.00 0.00 4.40
6832 7114 7.116948 CGGACTAATTAGAGATTAATGGCTGTG 59.883 40.741 19.38 0.00 0.00 3.66
6833 7115 8.150945 GGACTAATTAGAGATTAATGGCTGTGA 58.849 37.037 19.38 0.00 0.00 3.58
6834 7116 9.717942 GACTAATTAGAGATTAATGGCTGTGAT 57.282 33.333 19.38 0.00 0.00 3.06
6837 7119 8.985315 AATTAGAGATTAATGGCTGTGATTCA 57.015 30.769 0.00 0.00 0.00 2.57
6838 7120 8.618702 ATTAGAGATTAATGGCTGTGATTCAG 57.381 34.615 0.00 0.00 46.12 3.02
6839 7121 5.999044 AGAGATTAATGGCTGTGATTCAGT 58.001 37.500 0.00 0.00 45.23 3.41
6840 7122 6.421485 AGAGATTAATGGCTGTGATTCAGTT 58.579 36.000 0.00 0.00 45.23 3.16
6841 7123 7.568349 AGAGATTAATGGCTGTGATTCAGTTA 58.432 34.615 0.00 0.00 45.23 2.24
6842 7124 8.049117 AGAGATTAATGGCTGTGATTCAGTTAA 58.951 33.333 0.00 0.00 45.23 2.01
6843 7125 8.218338 AGATTAATGGCTGTGATTCAGTTAAG 57.782 34.615 0.00 0.00 45.23 1.85
6844 7126 7.831193 AGATTAATGGCTGTGATTCAGTTAAGT 59.169 33.333 0.00 0.00 45.23 2.24
6845 7127 5.633830 AATGGCTGTGATTCAGTTAAGTG 57.366 39.130 3.73 3.73 45.23 3.16
6846 7128 3.411446 TGGCTGTGATTCAGTTAAGTGG 58.589 45.455 10.39 0.00 45.23 4.00
6847 7129 2.749621 GGCTGTGATTCAGTTAAGTGGG 59.250 50.000 10.39 0.00 45.23 4.61
6848 7130 3.559171 GGCTGTGATTCAGTTAAGTGGGA 60.559 47.826 10.39 0.61 45.23 4.37
6849 7131 3.437049 GCTGTGATTCAGTTAAGTGGGAC 59.563 47.826 10.39 3.43 45.23 4.46
6850 7132 3.659786 TGTGATTCAGTTAAGTGGGACG 58.340 45.455 10.39 0.00 0.00 4.79
6851 7133 3.000727 GTGATTCAGTTAAGTGGGACGG 58.999 50.000 10.39 0.00 0.00 4.79
6852 7134 2.027561 TGATTCAGTTAAGTGGGACGGG 60.028 50.000 10.39 0.00 0.00 5.28
6853 7135 0.035739 TTCAGTTAAGTGGGACGGGC 59.964 55.000 10.39 0.00 0.00 6.13
6854 7136 1.376812 CAGTTAAGTGGGACGGGCC 60.377 63.158 2.05 0.00 0.00 5.80
6864 7146 3.324108 GACGGGCCCCACCACTTA 61.324 66.667 18.66 0.00 42.05 2.24
6865 7147 2.855014 ACGGGCCCCACCACTTAA 60.855 61.111 18.66 0.00 42.05 1.85
6866 7148 2.414658 GACGGGCCCCACCACTTAAA 62.415 60.000 18.66 0.00 42.05 1.52
6867 7149 1.228613 CGGGCCCCACCACTTAAAA 60.229 57.895 18.66 0.00 42.05 1.52
6868 7150 0.613572 CGGGCCCCACCACTTAAAAT 60.614 55.000 18.66 0.00 42.05 1.82
6869 7151 1.191535 GGGCCCCACCACTTAAAATC 58.808 55.000 12.23 0.00 42.05 2.17
6870 7152 1.551329 GGGCCCCACCACTTAAAATCA 60.551 52.381 12.23 0.00 42.05 2.57
6871 7153 1.824852 GGCCCCACCACTTAAAATCAG 59.175 52.381 0.00 0.00 38.86 2.90
6872 7154 2.556559 GGCCCCACCACTTAAAATCAGA 60.557 50.000 0.00 0.00 38.86 3.27
6873 7155 2.755103 GCCCCACCACTTAAAATCAGAG 59.245 50.000 0.00 0.00 0.00 3.35
6874 7156 3.356290 CCCCACCACTTAAAATCAGAGG 58.644 50.000 0.00 0.00 0.00 3.69
6875 7157 3.356290 CCCACCACTTAAAATCAGAGGG 58.644 50.000 0.00 0.00 0.00 4.30
6876 7158 3.010138 CCCACCACTTAAAATCAGAGGGA 59.990 47.826 0.00 0.00 34.49 4.20
6877 7159 4.265073 CCACCACTTAAAATCAGAGGGAG 58.735 47.826 0.00 0.00 0.00 4.30
6878 7160 3.691609 CACCACTTAAAATCAGAGGGAGC 59.308 47.826 0.00 0.00 0.00 4.70
6879 7161 3.282885 CCACTTAAAATCAGAGGGAGCC 58.717 50.000 0.00 0.00 0.00 4.70
6880 7162 3.308402 CCACTTAAAATCAGAGGGAGCCA 60.308 47.826 0.00 0.00 0.00 4.75
6881 7163 4.335416 CACTTAAAATCAGAGGGAGCCAA 58.665 43.478 0.00 0.00 0.00 4.52
6882 7164 4.952335 CACTTAAAATCAGAGGGAGCCAAT 59.048 41.667 0.00 0.00 0.00 3.16
6883 7165 5.420104 CACTTAAAATCAGAGGGAGCCAATT 59.580 40.000 0.00 0.00 0.00 2.32
6884 7166 6.603201 CACTTAAAATCAGAGGGAGCCAATTA 59.397 38.462 0.00 0.00 0.00 1.40
6885 7167 6.830838 ACTTAAAATCAGAGGGAGCCAATTAG 59.169 38.462 0.00 0.00 0.00 1.73
6886 7168 5.456921 AAAATCAGAGGGAGCCAATTAGA 57.543 39.130 0.00 0.00 0.00 2.10
6887 7169 5.659849 AAATCAGAGGGAGCCAATTAGAT 57.340 39.130 0.00 0.00 0.00 1.98
6888 7170 5.659849 AATCAGAGGGAGCCAATTAGATT 57.340 39.130 0.00 0.00 0.00 2.40
6889 7171 6.770286 AATCAGAGGGAGCCAATTAGATTA 57.230 37.500 0.00 0.00 0.00 1.75
6890 7172 5.815233 TCAGAGGGAGCCAATTAGATTAG 57.185 43.478 0.00 0.00 0.00 1.73
6891 7173 4.040952 TCAGAGGGAGCCAATTAGATTAGC 59.959 45.833 0.00 0.00 0.00 3.09
6892 7174 3.007398 AGAGGGAGCCAATTAGATTAGCG 59.993 47.826 0.00 0.00 32.03 4.26
6893 7175 1.807142 GGGAGCCAATTAGATTAGCGC 59.193 52.381 0.00 0.00 32.03 5.92
6894 7176 2.494059 GGAGCCAATTAGATTAGCGCA 58.506 47.619 11.47 0.00 32.03 6.09
6895 7177 3.077359 GGAGCCAATTAGATTAGCGCAT 58.923 45.455 11.47 0.00 32.03 4.73
6896 7178 3.120060 GGAGCCAATTAGATTAGCGCATG 60.120 47.826 11.47 0.00 32.03 4.06
6897 7179 3.480470 AGCCAATTAGATTAGCGCATGT 58.520 40.909 11.47 0.00 32.03 3.21
6898 7180 3.885297 AGCCAATTAGATTAGCGCATGTT 59.115 39.130 11.47 0.00 32.03 2.71
6899 7181 4.023707 AGCCAATTAGATTAGCGCATGTTC 60.024 41.667 11.47 0.23 32.03 3.18
6900 7182 4.023707 GCCAATTAGATTAGCGCATGTTCT 60.024 41.667 11.47 8.77 0.00 3.01
6901 7183 5.683859 CCAATTAGATTAGCGCATGTTCTC 58.316 41.667 11.47 0.00 0.00 2.87
6902 7184 5.334414 CCAATTAGATTAGCGCATGTTCTCC 60.334 44.000 11.47 0.00 0.00 3.71
6903 7185 2.988010 AGATTAGCGCATGTTCTCCA 57.012 45.000 11.47 0.00 0.00 3.86
6904 7186 2.555199 AGATTAGCGCATGTTCTCCAC 58.445 47.619 11.47 0.00 0.00 4.02
6905 7187 1.599542 GATTAGCGCATGTTCTCCACC 59.400 52.381 11.47 0.00 0.00 4.61
6906 7188 0.392461 TTAGCGCATGTTCTCCACCC 60.392 55.000 11.47 0.00 0.00 4.61
6907 7189 2.252072 TAGCGCATGTTCTCCACCCC 62.252 60.000 11.47 0.00 0.00 4.95
6908 7190 2.819595 CGCATGTTCTCCACCCCG 60.820 66.667 0.00 0.00 0.00 5.73
6909 7191 2.351276 GCATGTTCTCCACCCCGT 59.649 61.111 0.00 0.00 0.00 5.28
6910 7192 2.040544 GCATGTTCTCCACCCCGTG 61.041 63.158 0.00 0.00 0.00 4.94
6911 7193 1.676968 CATGTTCTCCACCCCGTGA 59.323 57.895 0.00 0.00 35.23 4.35
6912 7194 0.036164 CATGTTCTCCACCCCGTGAA 59.964 55.000 0.00 0.00 35.23 3.18
6913 7195 0.768622 ATGTTCTCCACCCCGTGAAA 59.231 50.000 0.00 0.00 35.23 2.69
6914 7196 0.107831 TGTTCTCCACCCCGTGAAAG 59.892 55.000 0.00 0.00 35.23 2.62
6915 7197 0.108019 GTTCTCCACCCCGTGAAAGT 59.892 55.000 0.00 0.00 35.23 2.66
6916 7198 0.395312 TTCTCCACCCCGTGAAAGTC 59.605 55.000 0.00 0.00 35.23 3.01
6917 7199 1.003718 CTCCACCCCGTGAAAGTCC 60.004 63.158 0.00 0.00 35.23 3.85
6918 7200 2.358247 CCACCCCGTGAAAGTCCG 60.358 66.667 0.00 0.00 35.23 4.79
6919 7201 2.424302 CACCCCGTGAAAGTCCGT 59.576 61.111 0.00 0.00 35.23 4.69
6920 7202 1.227734 CACCCCGTGAAAGTCCGTT 60.228 57.895 0.00 0.00 35.23 4.44
6921 7203 1.227734 ACCCCGTGAAAGTCCGTTG 60.228 57.895 0.00 0.00 0.00 4.10
6922 7204 1.070105 CCCCGTGAAAGTCCGTTGA 59.930 57.895 0.00 0.00 0.00 3.18
6923 7205 0.533308 CCCCGTGAAAGTCCGTTGAA 60.533 55.000 0.00 0.00 0.00 2.69
6924 7206 1.519408 CCCGTGAAAGTCCGTTGAAT 58.481 50.000 0.00 0.00 0.00 2.57
6925 7207 1.877443 CCCGTGAAAGTCCGTTGAATT 59.123 47.619 0.00 0.00 0.00 2.17
6926 7208 2.292292 CCCGTGAAAGTCCGTTGAATTT 59.708 45.455 0.00 0.00 41.15 1.82
6927 7209 3.296628 CCGTGAAAGTCCGTTGAATTTG 58.703 45.455 0.00 0.00 38.77 2.32
6928 7210 2.719046 CGTGAAAGTCCGTTGAATTTGC 59.281 45.455 0.00 0.00 38.77 3.68
6929 7211 3.049912 GTGAAAGTCCGTTGAATTTGCC 58.950 45.455 0.00 0.00 38.77 4.52
6930 7212 2.955660 TGAAAGTCCGTTGAATTTGCCT 59.044 40.909 0.00 0.00 38.77 4.75
6931 7213 3.243367 TGAAAGTCCGTTGAATTTGCCTG 60.243 43.478 0.00 0.00 38.77 4.85
6932 7214 1.981256 AGTCCGTTGAATTTGCCTGT 58.019 45.000 0.00 0.00 0.00 4.00
6933 7215 1.608590 AGTCCGTTGAATTTGCCTGTG 59.391 47.619 0.00 0.00 0.00 3.66
6934 7216 1.606668 GTCCGTTGAATTTGCCTGTGA 59.393 47.619 0.00 0.00 0.00 3.58
6935 7217 2.034053 GTCCGTTGAATTTGCCTGTGAA 59.966 45.455 0.00 0.00 0.00 3.18
6936 7218 2.890311 TCCGTTGAATTTGCCTGTGAAT 59.110 40.909 0.00 0.00 0.00 2.57
6937 7219 2.988493 CCGTTGAATTTGCCTGTGAATG 59.012 45.455 0.00 0.00 0.00 2.67
6938 7220 3.552684 CCGTTGAATTTGCCTGTGAATGT 60.553 43.478 0.00 0.00 0.00 2.71
6939 7221 4.320861 CCGTTGAATTTGCCTGTGAATGTA 60.321 41.667 0.00 0.00 0.00 2.29
6940 7222 4.853196 CGTTGAATTTGCCTGTGAATGTAG 59.147 41.667 0.00 0.00 0.00 2.74
6941 7223 5.562696 CGTTGAATTTGCCTGTGAATGTAGT 60.563 40.000 0.00 0.00 0.00 2.73
6942 7224 6.348132 CGTTGAATTTGCCTGTGAATGTAGTA 60.348 38.462 0.00 0.00 0.00 1.82
6943 7225 7.538575 GTTGAATTTGCCTGTGAATGTAGTAT 58.461 34.615 0.00 0.00 0.00 2.12
6944 7226 7.701539 TGAATTTGCCTGTGAATGTAGTATT 57.298 32.000 0.00 0.00 0.00 1.89
6945 7227 8.800370 TGAATTTGCCTGTGAATGTAGTATTA 57.200 30.769 0.00 0.00 0.00 0.98
6946 7228 9.407380 TGAATTTGCCTGTGAATGTAGTATTAT 57.593 29.630 0.00 0.00 0.00 1.28
6947 7229 9.884465 GAATTTGCCTGTGAATGTAGTATTATC 57.116 33.333 0.00 0.00 0.00 1.75
6948 7230 7.477144 TTTGCCTGTGAATGTAGTATTATCG 57.523 36.000 0.00 0.00 0.00 2.92
6949 7231 6.399639 TGCCTGTGAATGTAGTATTATCGA 57.600 37.500 0.00 0.00 0.00 3.59
6950 7232 6.993079 TGCCTGTGAATGTAGTATTATCGAT 58.007 36.000 2.16 2.16 0.00 3.59
6951 7233 8.117813 TGCCTGTGAATGTAGTATTATCGATA 57.882 34.615 0.00 0.00 0.00 2.92
6952 7234 8.749354 TGCCTGTGAATGTAGTATTATCGATAT 58.251 33.333 5.84 0.00 0.00 1.63
6953 7235 9.239002 GCCTGTGAATGTAGTATTATCGATATC 57.761 37.037 5.84 0.00 0.00 1.63
6954 7236 9.737427 CCTGTGAATGTAGTATTATCGATATCC 57.263 37.037 5.84 0.00 0.00 2.59
6972 7254 2.294074 TCCAACTACCAAACTGTGCAC 58.706 47.619 10.75 10.75 0.00 4.57
6973 7255 1.336755 CCAACTACCAAACTGTGCACC 59.663 52.381 15.69 0.00 0.00 5.01
6975 7257 0.534203 ACTACCAAACTGTGCACCCG 60.534 55.000 15.69 8.09 0.00 5.28
6987 7269 4.522789 ACTGTGCACCCGATAGAAAATTTT 59.477 37.500 15.69 2.28 39.76 1.82
7042 7324 7.523293 TTCTGGAATTCATTAGTGAAGCAAA 57.477 32.000 7.93 0.00 46.75 3.68
7129 7411 4.640771 AGATGCTCCTTTGTCCAAGTAA 57.359 40.909 0.00 0.00 0.00 2.24
7130 7412 5.184892 AGATGCTCCTTTGTCCAAGTAAT 57.815 39.130 0.00 0.00 0.00 1.89
7131 7413 6.313519 AGATGCTCCTTTGTCCAAGTAATA 57.686 37.500 0.00 0.00 0.00 0.98
7180 7462 3.544684 GTCAGTTGATGCCACATATCCA 58.455 45.455 0.00 0.00 0.00 3.41
7188 7470 3.650281 TGCCACATATCCAATCAGTGT 57.350 42.857 0.00 0.00 0.00 3.55
7189 7471 3.281158 TGCCACATATCCAATCAGTGTG 58.719 45.455 0.00 0.00 39.76 3.82
7190 7472 2.033801 GCCACATATCCAATCAGTGTGC 59.966 50.000 0.00 0.00 38.97 4.57
7202 7496 1.153107 AGTGTGCACTGCAGCTGAA 60.153 52.632 20.43 5.87 40.08 3.02
7218 7512 0.880278 TGAAGCTGCACCGAACAGTC 60.880 55.000 1.02 0.00 37.47 3.51
7303 7611 3.002348 GCATCTGTAAATCTGTTACCCGC 59.998 47.826 0.00 0.00 0.00 6.13
7305 7613 2.835764 TCTGTAAATCTGTTACCCGCCT 59.164 45.455 0.00 0.00 0.00 5.52
7383 7692 2.839474 CAAGACGCGAATTCACCTTTC 58.161 47.619 15.93 0.00 0.00 2.62
7452 7761 3.634397 TTGCTGAAGGTTATGGAGAGG 57.366 47.619 0.00 0.00 0.00 3.69
7472 7781 3.054361 AGGTTGGCTAATCCTGGTAAGTG 60.054 47.826 3.72 0.00 35.26 3.16
7485 7794 7.894376 TCCTGGTAAGTGTTTTTCTATTACG 57.106 36.000 0.00 0.00 0.00 3.18
7486 7795 6.369615 TCCTGGTAAGTGTTTTTCTATTACGC 59.630 38.462 0.00 0.00 0.00 4.42
7508 7821 4.494199 GCACCTGCACGAGTATTAATTGTC 60.494 45.833 0.00 0.00 41.59 3.18
7514 7827 4.806247 GCACGAGTATTAATTGTCTGCTCT 59.194 41.667 0.00 0.00 0.00 4.09
7539 7854 0.037697 TTCACCGGATTCTCGTGTGG 60.038 55.000 9.46 0.00 34.51 4.17
7664 7979 0.512952 CGAGAGCCCTGTTTTCGTTG 59.487 55.000 0.00 0.00 0.00 4.10
7670 7985 0.671796 CCCTGTTTTCGTTGGTTCCC 59.328 55.000 0.00 0.00 0.00 3.97
7986 8324 3.858238 CGTTCTGTGCCTAGTTTACTAGC 59.142 47.826 10.74 7.58 43.47 3.42
7993 8331 3.626670 TGCCTAGTTTACTAGCGAGAGAC 59.373 47.826 10.74 0.00 43.47 3.36
7994 8332 3.003585 GCCTAGTTTACTAGCGAGAGACC 59.996 52.174 10.74 0.00 43.47 3.85
7995 8333 3.565063 CCTAGTTTACTAGCGAGAGACCC 59.435 52.174 10.74 0.00 43.47 4.46
8063 8406 1.531149 CGGTTCAAGTGTCACCATGTC 59.469 52.381 0.00 0.00 0.00 3.06
8214 8561 4.082787 ACCTCATTTTATGTTGAACTGCCG 60.083 41.667 0.00 0.00 0.00 5.69
8219 8578 4.902443 TTTATGTTGAACTGCCGTTTGA 57.098 36.364 0.00 0.00 32.39 2.69
8304 8670 3.605879 TCCATCCATCCATCCTCTTGAT 58.394 45.455 0.00 0.00 0.00 2.57
8376 8742 2.084546 GCTGAATAAGGTGCCGTCTTT 58.915 47.619 0.00 0.00 0.00 2.52
8386 8752 0.179067 TGCCGTCTTTTCCGTTGTCT 60.179 50.000 0.00 0.00 0.00 3.41
8388 8754 1.860676 CCGTCTTTTCCGTTGTCTGA 58.139 50.000 0.00 0.00 0.00 3.27
8389 8755 1.525619 CCGTCTTTTCCGTTGTCTGAC 59.474 52.381 0.00 0.00 0.00 3.51
8405 8784 7.377397 CGTTGTCTGACTATCTTTGCTACTATC 59.623 40.741 9.51 0.00 0.00 2.08
8475 8854 6.926280 TCAAGCATACATTTAAAAGTTGCG 57.074 33.333 17.07 9.76 33.99 4.85
8495 8874 8.120465 AGTTGCGAAAATAAATAATCACTACCG 58.880 33.333 0.00 0.00 0.00 4.02
8496 8875 6.423862 TGCGAAAATAAATAATCACTACCGC 58.576 36.000 0.00 0.00 37.31 5.68
8533 8918 7.393234 TCGGATGTTCAAGTTTTTAGATCCATT 59.607 33.333 0.00 0.00 0.00 3.16
8571 8956 0.171007 CCCGGCTGTACATGCAAAAG 59.829 55.000 15.90 6.86 0.00 2.27
8576 8961 2.162408 GGCTGTACATGCAAAAGACCTC 59.838 50.000 15.90 0.00 0.00 3.85
8580 8965 4.072131 TGTACATGCAAAAGACCTCCTTC 58.928 43.478 0.00 0.00 33.02 3.46
8593 8978 1.206849 CCTCCTTCAGCTTCCAGTCTC 59.793 57.143 0.00 0.00 0.00 3.36
8594 8979 2.178580 CTCCTTCAGCTTCCAGTCTCT 58.821 52.381 0.00 0.00 0.00 3.10
8595 8980 2.166254 CTCCTTCAGCTTCCAGTCTCTC 59.834 54.545 0.00 0.00 0.00 3.20
8596 8981 1.206849 CCTTCAGCTTCCAGTCTCTCC 59.793 57.143 0.00 0.00 0.00 3.71
8597 8982 1.898472 CTTCAGCTTCCAGTCTCTCCA 59.102 52.381 0.00 0.00 0.00 3.86
8598 8983 2.015456 TCAGCTTCCAGTCTCTCCAA 57.985 50.000 0.00 0.00 0.00 3.53
8599 8984 1.620819 TCAGCTTCCAGTCTCTCCAAC 59.379 52.381 0.00 0.00 0.00 3.77
8600 8985 1.622811 CAGCTTCCAGTCTCTCCAACT 59.377 52.381 0.00 0.00 0.00 3.16
8601 8986 1.899142 AGCTTCCAGTCTCTCCAACTC 59.101 52.381 0.00 0.00 0.00 3.01
8602 8987 1.066502 GCTTCCAGTCTCTCCAACTCC 60.067 57.143 0.00 0.00 0.00 3.85
8603 8988 2.534990 CTTCCAGTCTCTCCAACTCCT 58.465 52.381 0.00 0.00 0.00 3.69
8604 8989 2.223803 TCCAGTCTCTCCAACTCCTC 57.776 55.000 0.00 0.00 0.00 3.71
8605 8990 1.190643 CCAGTCTCTCCAACTCCTCC 58.809 60.000 0.00 0.00 0.00 4.30
8606 8991 1.272985 CCAGTCTCTCCAACTCCTCCT 60.273 57.143 0.00 0.00 0.00 3.69
8607 8992 2.534990 CAGTCTCTCCAACTCCTCCTT 58.465 52.381 0.00 0.00 0.00 3.36
8608 8993 2.903135 CAGTCTCTCCAACTCCTCCTTT 59.097 50.000 0.00 0.00 0.00 3.11
8609 8994 3.326297 CAGTCTCTCCAACTCCTCCTTTT 59.674 47.826 0.00 0.00 0.00 2.27
8610 8995 3.977326 AGTCTCTCCAACTCCTCCTTTTT 59.023 43.478 0.00 0.00 0.00 1.94
8611 8996 4.068599 GTCTCTCCAACTCCTCCTTTTTG 58.931 47.826 0.00 0.00 0.00 2.44
8612 8997 3.716872 TCTCTCCAACTCCTCCTTTTTGT 59.283 43.478 0.00 0.00 0.00 2.83
8613 8998 4.068599 CTCTCCAACTCCTCCTTTTTGTC 58.931 47.826 0.00 0.00 0.00 3.18
8614 8999 3.458118 TCTCCAACTCCTCCTTTTTGTCA 59.542 43.478 0.00 0.00 0.00 3.58
8615 9000 4.104738 TCTCCAACTCCTCCTTTTTGTCAT 59.895 41.667 0.00 0.00 0.00 3.06
8616 9001 4.144297 TCCAACTCCTCCTTTTTGTCATG 58.856 43.478 0.00 0.00 0.00 3.07
8617 9002 4.141274 TCCAACTCCTCCTTTTTGTCATGA 60.141 41.667 0.00 0.00 0.00 3.07
8618 9003 4.022849 CCAACTCCTCCTTTTTGTCATGAC 60.023 45.833 19.27 19.27 0.00 3.06
8619 9004 3.403038 ACTCCTCCTTTTTGTCATGACG 58.597 45.455 20.54 6.07 0.00 4.35
8620 9005 2.744202 CTCCTCCTTTTTGTCATGACGG 59.256 50.000 20.54 14.75 0.00 4.79
8621 9006 1.200020 CCTCCTTTTTGTCATGACGGC 59.800 52.381 20.54 0.00 0.00 5.68
8622 9007 1.200020 CTCCTTTTTGTCATGACGGCC 59.800 52.381 20.54 0.00 0.00 6.13
8623 9008 1.202879 TCCTTTTTGTCATGACGGCCT 60.203 47.619 20.54 0.00 0.00 5.19
8624 9009 1.200020 CCTTTTTGTCATGACGGCCTC 59.800 52.381 20.54 0.00 0.00 4.70
8625 9010 1.879380 CTTTTTGTCATGACGGCCTCA 59.121 47.619 20.54 4.06 0.00 3.86
8626 9011 1.974265 TTTTGTCATGACGGCCTCAA 58.026 45.000 20.54 5.76 30.60 3.02
8627 9012 1.974265 TTTGTCATGACGGCCTCAAA 58.026 45.000 20.54 11.40 30.60 2.69
8628 9013 1.234821 TTGTCATGACGGCCTCAAAC 58.765 50.000 20.54 7.50 30.60 2.93
8629 9014 0.396435 TGTCATGACGGCCTCAAACT 59.604 50.000 20.54 0.00 30.60 2.66
8630 9015 1.202758 TGTCATGACGGCCTCAAACTT 60.203 47.619 20.54 0.00 30.60 2.66
8631 9016 1.197721 GTCATGACGGCCTCAAACTTG 59.802 52.381 10.69 0.00 30.60 3.16
8632 9017 1.202758 TCATGACGGCCTCAAACTTGT 60.203 47.619 0.00 0.00 30.60 3.16
8633 9018 1.197721 CATGACGGCCTCAAACTTGTC 59.802 52.381 0.00 0.00 30.60 3.18
8634 9019 0.534203 TGACGGCCTCAAACTTGTCC 60.534 55.000 0.00 0.00 0.00 4.02
8635 9020 0.534203 GACGGCCTCAAACTTGTCCA 60.534 55.000 0.00 0.00 0.00 4.02
8636 9021 0.110486 ACGGCCTCAAACTTGTCCAT 59.890 50.000 0.00 0.00 0.00 3.41
8637 9022 0.804989 CGGCCTCAAACTTGTCCATC 59.195 55.000 0.00 0.00 0.00 3.51
8638 9023 1.881925 CGGCCTCAAACTTGTCCATCA 60.882 52.381 0.00 0.00 0.00 3.07
8639 9024 2.450476 GGCCTCAAACTTGTCCATCAT 58.550 47.619 0.00 0.00 0.00 2.45
8640 9025 2.424956 GGCCTCAAACTTGTCCATCATC 59.575 50.000 0.00 0.00 0.00 2.92
8641 9026 3.350833 GCCTCAAACTTGTCCATCATCT 58.649 45.455 0.00 0.00 0.00 2.90
8642 9027 3.760684 GCCTCAAACTTGTCCATCATCTT 59.239 43.478 0.00 0.00 0.00 2.40
8643 9028 4.380233 GCCTCAAACTTGTCCATCATCTTG 60.380 45.833 0.00 0.00 0.00 3.02
8644 9029 4.157289 CCTCAAACTTGTCCATCATCTTGG 59.843 45.833 0.00 0.00 38.18 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.092375 CCAGGAAATAGGTGAGGGGTTC 60.092 54.545 0.00 0.00 0.00 3.62
1 2 1.923148 CCAGGAAATAGGTGAGGGGTT 59.077 52.381 0.00 0.00 0.00 4.11
33 34 8.822855 CACAATAGTTACGTTATTATGGAGCAA 58.177 33.333 0.00 0.00 0.00 3.91
34 35 7.982919 ACACAATAGTTACGTTATTATGGAGCA 59.017 33.333 0.00 0.00 0.00 4.26
43 44 7.649306 GGTCGGATAACACAATAGTTACGTTAT 59.351 37.037 0.00 0.00 36.85 1.89
63 64 5.542251 TGATGTGGAGAAATATATGGTCGGA 59.458 40.000 0.00 0.00 0.00 4.55
66 67 6.876257 GGAGTGATGTGGAGAAATATATGGTC 59.124 42.308 0.00 0.00 0.00 4.02
77 78 1.909302 GGGAAAGGAGTGATGTGGAGA 59.091 52.381 0.00 0.00 0.00 3.71
94 95 1.975407 GAAGGTGGACGACGAGGGA 60.975 63.158 0.00 0.00 0.00 4.20
99 100 0.736325 GTGATGGAAGGTGGACGACG 60.736 60.000 0.00 0.00 0.00 5.12
101 102 0.834261 TGGTGATGGAAGGTGGACGA 60.834 55.000 0.00 0.00 0.00 4.20
103 104 1.202879 TGTTGGTGATGGAAGGTGGAC 60.203 52.381 0.00 0.00 0.00 4.02
111 112 4.022416 CCGAAGAAAAATGTTGGTGATGGA 60.022 41.667 0.00 0.00 0.00 3.41
117 118 3.258123 CCATCCCGAAGAAAAATGTTGGT 59.742 43.478 0.00 0.00 0.00 3.67
122 123 1.472480 ACGCCATCCCGAAGAAAAATG 59.528 47.619 0.00 0.00 0.00 2.32
131 132 1.238625 GGACAAAAACGCCATCCCGA 61.239 55.000 0.00 0.00 0.00 5.14
139 140 1.525804 GCACGAACGGACAAAAACGC 61.526 55.000 0.00 0.00 0.00 4.84
226 227 2.169146 GGCGATTACGTTGTCGGGG 61.169 63.158 19.38 0.00 41.85 5.73
231 232 0.035739 AACAGGGGCGATTACGTTGT 59.964 50.000 0.00 0.00 41.98 3.32
270 272 0.877213 CGGGGTTTTATAGGCGACGG 60.877 60.000 0.00 0.00 0.00 4.79
316 319 3.588891 GAGGCGACGGCGGTTTTTG 62.589 63.158 15.06 0.00 41.24 2.44
374 378 4.451150 GCCGATGGTGGTCGCTGA 62.451 66.667 0.00 0.00 40.17 4.26
376 380 4.148825 GAGCCGATGGTGGTCGCT 62.149 66.667 0.00 0.00 40.17 4.93
378 382 1.592669 GATGAGCCGATGGTGGTCG 60.593 63.158 0.00 0.00 41.13 4.79
438 442 0.827368 GATTTCTCGCAGGTCCCTCT 59.173 55.000 0.00 0.00 0.00 3.69
463 467 1.910580 TTCTTCCCCGCCTGCCTAAG 61.911 60.000 0.00 0.00 0.00 2.18
488 492 1.985895 CACACCCTAACCTTCTTCCCT 59.014 52.381 0.00 0.00 0.00 4.20
735 748 2.022240 GCATCTCCCTCGGTCTGTCC 62.022 65.000 0.00 0.00 0.00 4.02
736 749 1.439644 GCATCTCCCTCGGTCTGTC 59.560 63.158 0.00 0.00 0.00 3.51
737 750 2.060980 GGCATCTCCCTCGGTCTGT 61.061 63.158 0.00 0.00 0.00 3.41
738 751 2.818132 GGCATCTCCCTCGGTCTG 59.182 66.667 0.00 0.00 0.00 3.51
978 1013 3.826754 CTCCTGCTAGCCGTCGCA 61.827 66.667 13.29 0.00 37.52 5.10
1390 1435 7.065683 TCGATCAAGTGAGCAGCATTAAAATAA 59.934 33.333 0.00 0.00 0.00 1.40
1391 1436 6.538381 TCGATCAAGTGAGCAGCATTAAAATA 59.462 34.615 0.00 0.00 0.00 1.40
1392 1437 5.355071 TCGATCAAGTGAGCAGCATTAAAAT 59.645 36.000 0.00 0.00 0.00 1.82
1507 1566 2.930826 AAACATATCTACAGCCCCCG 57.069 50.000 0.00 0.00 0.00 5.73
1523 1582 7.854534 ACCATAGTACGTACAAACAAGAAAAC 58.145 34.615 26.55 0.00 0.00 2.43
1587 1656 0.035458 AAGCTGCACCACCAGAGTAC 59.965 55.000 1.02 0.00 34.77 2.73
1702 1771 3.741830 TTCTGTTGTCGTGGCGCCA 62.742 57.895 29.03 29.03 0.00 5.69
1703 1772 2.954753 CTTCTGTTGTCGTGGCGCC 61.955 63.158 22.73 22.73 0.00 6.53
1836 1905 8.359875 TCATGGGATTTAAAAAGCAGTAATCA 57.640 30.769 0.00 0.00 0.00 2.57
1879 1951 4.998672 CCTACGACAAAATTGGGAGTTACA 59.001 41.667 0.00 0.00 0.00 2.41
1944 2016 5.277250 GCTGCAGATAGCTTGAAATACAGTC 60.277 44.000 20.43 0.00 45.94 3.51
2106 2178 2.881513 TGCTGGACAATCGCTAAAACAA 59.118 40.909 0.00 0.00 0.00 2.83
2774 2857 5.163343 GCAGAGAACTACCATATAACCACCA 60.163 44.000 0.00 0.00 0.00 4.17
2854 2937 7.696453 GTCATTGTTACGTAAATTTCATCCCTG 59.304 37.037 10.11 1.01 0.00 4.45
3417 3509 2.037381 TCATGAGATGCAGGCAGAGATC 59.963 50.000 0.00 0.00 0.00 2.75
3491 3583 3.118592 ACTGTCTCGATTCTCCCAATTCC 60.119 47.826 0.00 0.00 0.00 3.01
3618 3713 8.808529 CAGTATTGAGCTGTACACTTGTATTAC 58.191 37.037 0.00 0.00 32.54 1.89
3699 3794 0.537188 AATGACTGGGGTCGCTAGTG 59.463 55.000 10.76 0.00 44.83 2.74
3700 3795 0.537188 CAATGACTGGGGTCGCTAGT 59.463 55.000 5.56 5.56 44.83 2.57
3701 3796 0.811616 GCAATGACTGGGGTCGCTAG 60.812 60.000 0.00 0.00 44.83 3.42
3706 3802 2.099756 GCAATAAGCAATGACTGGGGTC 59.900 50.000 0.00 0.00 44.79 4.46
3746 3842 2.026169 AGCTAAGAAACTAACCCCAGCC 60.026 50.000 0.00 0.00 0.00 4.85
3747 3843 3.351794 AGCTAAGAAACTAACCCCAGC 57.648 47.619 0.00 0.00 0.00 4.85
3920 4016 0.613012 AGGAATCCCCTGCAAAGTGC 60.613 55.000 0.00 0.00 45.61 4.40
4164 4260 1.376812 CTTTTTCGGACGGAGGGGG 60.377 63.158 0.00 0.00 0.00 5.40
4165 4261 2.038837 GCTTTTTCGGACGGAGGGG 61.039 63.158 0.00 0.00 0.00 4.79
4166 4262 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
4167 4263 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
4168 4264 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
4169 4265 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
4170 4266 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
4171 4267 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
4172 4268 1.314730 TGGGACAAGCTTTTTCGGAC 58.685 50.000 0.00 0.00 31.92 4.79
4173 4269 3.811031 TGGGACAAGCTTTTTCGGA 57.189 47.368 0.00 0.00 31.92 4.55
4183 4279 4.249028 TTGAGGAACAAGCTTGGGACAAG 61.249 47.826 29.18 3.71 37.48 3.16
4184 4280 2.357673 TTGAGGAACAAGCTTGGGACAA 60.358 45.455 29.18 21.59 37.48 3.18
4185 4281 0.843309 TGAGGAACAAGCTTGGGACA 59.157 50.000 29.18 17.71 0.00 4.02
4186 4282 1.981256 TTGAGGAACAAGCTTGGGAC 58.019 50.000 29.18 17.88 34.20 4.46
4187 4283 2.746279 TTTGAGGAACAAGCTTGGGA 57.254 45.000 29.18 4.51 39.77 4.37
4188 4284 2.028748 CCATTTGAGGAACAAGCTTGGG 60.029 50.000 29.18 13.19 39.77 4.12
4189 4285 2.892852 TCCATTTGAGGAACAAGCTTGG 59.107 45.455 29.18 12.28 39.77 3.61
4190 4286 4.021719 ACATCCATTTGAGGAACAAGCTTG 60.022 41.667 24.84 24.84 41.92 4.01
4191 4287 4.154942 ACATCCATTTGAGGAACAAGCTT 58.845 39.130 0.00 0.00 41.92 3.74
4192 4288 3.771216 ACATCCATTTGAGGAACAAGCT 58.229 40.909 0.00 0.00 41.92 3.74
4193 4289 5.591877 AGATACATCCATTTGAGGAACAAGC 59.408 40.000 0.00 0.00 41.92 4.01
4194 4290 7.041508 GCTAGATACATCCATTTGAGGAACAAG 60.042 40.741 0.00 0.00 41.92 3.16
4195 4291 6.767902 GCTAGATACATCCATTTGAGGAACAA 59.232 38.462 0.00 0.00 41.92 2.83
4196 4292 6.126796 TGCTAGATACATCCATTTGAGGAACA 60.127 38.462 0.00 0.00 41.92 3.18
4197 4293 6.203723 GTGCTAGATACATCCATTTGAGGAAC 59.796 42.308 0.00 0.00 41.92 3.62
4198 4294 6.100279 AGTGCTAGATACATCCATTTGAGGAA 59.900 38.462 0.00 0.00 41.92 3.36
4199 4295 5.604231 AGTGCTAGATACATCCATTTGAGGA 59.396 40.000 0.00 0.00 43.01 3.71
4200 4296 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
4201 4297 8.530311 AGATAGTGCTAGATACATCCATTTGAG 58.470 37.037 0.00 0.00 0.00 3.02
4202 4298 8.427902 AGATAGTGCTAGATACATCCATTTGA 57.572 34.615 0.00 0.00 0.00 2.69
4203 4299 8.933807 CAAGATAGTGCTAGATACATCCATTTG 58.066 37.037 0.00 0.00 0.00 2.32
4204 4300 8.099537 CCAAGATAGTGCTAGATACATCCATTT 58.900 37.037 0.00 0.00 0.00 2.32
4205 4301 7.236432 ACCAAGATAGTGCTAGATACATCCATT 59.764 37.037 0.00 0.00 0.00 3.16
4206 4302 6.728164 ACCAAGATAGTGCTAGATACATCCAT 59.272 38.462 0.00 0.00 0.00 3.41
4207 4303 6.015095 CACCAAGATAGTGCTAGATACATCCA 60.015 42.308 0.00 0.00 0.00 3.41
4208 4304 6.393990 CACCAAGATAGTGCTAGATACATCC 58.606 44.000 0.00 0.00 0.00 3.51
4220 4316 6.015095 TGGATGTATCTAGCACCAAGATAGTG 60.015 42.308 0.00 0.00 36.78 2.74
4221 4317 6.077993 TGGATGTATCTAGCACCAAGATAGT 58.922 40.000 0.00 0.00 36.78 2.12
4222 4318 6.596309 TGGATGTATCTAGCACCAAGATAG 57.404 41.667 0.00 0.00 36.78 2.08
4223 4319 7.559335 AATGGATGTATCTAGCACCAAGATA 57.441 36.000 0.00 0.00 35.36 1.98
4224 4320 6.445451 AATGGATGTATCTAGCACCAAGAT 57.555 37.500 0.00 0.00 37.46 2.40
4225 4321 5.894298 AATGGATGTATCTAGCACCAAGA 57.106 39.130 0.00 0.00 0.00 3.02
4226 4322 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
4227 4323 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
4228 4324 5.628797 TCAAATGGATGTATCTAGCACCA 57.371 39.130 0.00 0.00 0.00 4.17
4229 4325 6.492007 CATCAAATGGATGTATCTAGCACC 57.508 41.667 0.00 0.00 46.81 5.01
4261 4357 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
4262 4358 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4263 4359 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
4264 4360 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
4265 4361 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
4266 4362 0.102481 CAATGTACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
4267 4363 1.192428 ACAATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
4268 4364 2.028385 ACAACAATGTACTCCCTCCGTC 60.028 50.000 0.00 0.00 38.24 4.79
4269 4365 1.975680 ACAACAATGTACTCCCTCCGT 59.024 47.619 0.00 0.00 38.24 4.69
4270 4366 2.346803 CACAACAATGTACTCCCTCCG 58.653 52.381 0.00 0.00 37.82 4.63
4271 4367 2.618045 CCCACAACAATGTACTCCCTCC 60.618 54.545 0.00 0.00 37.82 4.30
4272 4368 2.039879 ACCCACAACAATGTACTCCCTC 59.960 50.000 0.00 0.00 37.82 4.30
4273 4369 2.062636 ACCCACAACAATGTACTCCCT 58.937 47.619 0.00 0.00 37.82 4.20
4274 4370 2.159382 CACCCACAACAATGTACTCCC 58.841 52.381 0.00 0.00 37.82 4.30
4275 4371 2.159382 CCACCCACAACAATGTACTCC 58.841 52.381 0.00 0.00 37.82 3.85
4276 4372 2.552315 CACCACCCACAACAATGTACTC 59.448 50.000 0.00 0.00 37.82 2.59
4277 4373 2.582052 CACCACCCACAACAATGTACT 58.418 47.619 0.00 0.00 37.82 2.73
4337 4434 6.449698 AGTGCCTTGATTCACAAAGTTATTG 58.550 36.000 0.00 0.00 38.08 1.90
4751 4894 1.078143 CAGCAGGCCTAGGGAACAC 60.078 63.158 3.98 0.00 0.00 3.32
5064 5296 4.631377 TGCTGATTTGATCTAAGTTGTCCG 59.369 41.667 0.00 0.00 0.00 4.79
5165 5397 6.166279 TCAGAGATGAAACATCAGTACCAAC 58.834 40.000 13.06 0.00 0.00 3.77
5209 5441 5.404946 CATAATTGGTCAAAGCAGTTCCAG 58.595 41.667 0.00 0.00 28.66 3.86
5514 5751 3.108144 CAAGACAAACTGACGGCAAAAG 58.892 45.455 0.00 0.00 0.00 2.27
5593 5830 4.087182 CCTAGACAACAGGAACTCCAGTA 58.913 47.826 0.00 0.00 34.60 2.74
5632 5869 3.686227 TTCATGGCAATACCCCTCAAT 57.314 42.857 0.00 0.00 37.83 2.57
5680 5917 5.237127 TGTTGACGATGAATAGATGATTGGC 59.763 40.000 0.00 0.00 0.00 4.52
5887 6127 3.782656 ACTGGTTGGTTTAGAATCGGT 57.217 42.857 0.00 0.00 0.00 4.69
6125 6380 5.947228 TGAATTGTGCTAAACCTCAAGAG 57.053 39.130 0.00 0.00 0.00 2.85
6127 6382 5.916883 CAGTTGAATTGTGCTAAACCTCAAG 59.083 40.000 0.00 0.00 0.00 3.02
6138 6393 8.570488 TCATATGGAATATCAGTTGAATTGTGC 58.430 33.333 2.13 0.00 37.44 4.57
6375 6631 8.946085 CCTCTGTAACTAAATATTGAACTGCAA 58.054 33.333 0.00 0.00 41.53 4.08
6376 6632 8.100791 ACCTCTGTAACTAAATATTGAACTGCA 58.899 33.333 0.00 0.00 0.00 4.41
6377 6633 8.494016 ACCTCTGTAACTAAATATTGAACTGC 57.506 34.615 0.00 0.00 0.00 4.40
6436 6714 4.101430 ACTGCAAAATGGAGGAAACACAAT 59.899 37.500 3.92 0.00 40.38 2.71
6437 6715 3.450457 ACTGCAAAATGGAGGAAACACAA 59.550 39.130 3.92 0.00 40.38 3.33
6561 6840 6.650120 TCAGTCTAAAACTTGGTTGAGAACT 58.350 36.000 0.00 0.00 35.45 3.01
6562 6841 6.920569 TCAGTCTAAAACTTGGTTGAGAAC 57.079 37.500 0.00 0.00 35.45 3.01
6620 6899 4.620982 ACAAGTTTCACATAGCAAAAGCC 58.379 39.130 0.00 0.00 0.00 4.35
6651 6930 7.169158 TGTTCATTCCCAAAATATCAACTCC 57.831 36.000 0.00 0.00 0.00 3.85
6762 7044 4.684242 CGTGTGTGTAGCATTACTCTTTGA 59.316 41.667 0.00 0.00 0.00 2.69
6767 7049 2.268298 CCCGTGTGTGTAGCATTACTC 58.732 52.381 0.00 0.00 0.00 2.59
6768 7050 1.674817 GCCCGTGTGTGTAGCATTACT 60.675 52.381 0.00 0.00 0.00 2.24
6769 7051 0.725117 GCCCGTGTGTGTAGCATTAC 59.275 55.000 0.00 0.00 0.00 1.89
6770 7052 0.321996 TGCCCGTGTGTGTAGCATTA 59.678 50.000 0.00 0.00 0.00 1.90
6771 7053 1.072332 TGCCCGTGTGTGTAGCATT 59.928 52.632 0.00 0.00 0.00 3.56
6772 7054 1.671054 GTGCCCGTGTGTGTAGCAT 60.671 57.895 0.00 0.00 35.62 3.79
6773 7055 2.280524 GTGCCCGTGTGTGTAGCA 60.281 61.111 0.00 0.00 0.00 3.49
6774 7056 1.164041 AAAGTGCCCGTGTGTGTAGC 61.164 55.000 0.00 0.00 0.00 3.58
6775 7057 1.796459 GTAAAGTGCCCGTGTGTGTAG 59.204 52.381 0.00 0.00 0.00 2.74
6776 7058 1.868469 GTAAAGTGCCCGTGTGTGTA 58.132 50.000 0.00 0.00 0.00 2.90
6777 7059 1.155424 CGTAAAGTGCCCGTGTGTGT 61.155 55.000 0.00 0.00 0.00 3.72
6778 7060 1.567537 CGTAAAGTGCCCGTGTGTG 59.432 57.895 0.00 0.00 0.00 3.82
6779 7061 1.595929 CCGTAAAGTGCCCGTGTGT 60.596 57.895 0.00 0.00 0.00 3.72
6780 7062 2.322081 CCCGTAAAGTGCCCGTGTG 61.322 63.158 0.00 0.00 0.00 3.82
6781 7063 2.031465 CCCGTAAAGTGCCCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
6782 7064 2.744709 CCCCGTAAAGTGCCCGTG 60.745 66.667 0.00 0.00 0.00 4.94
6783 7065 4.024545 CCCCCGTAAAGTGCCCGT 62.025 66.667 0.00 0.00 0.00 5.28
6785 7067 3.578968 AAGCCCCCGTAAAGTGCCC 62.579 63.158 0.00 0.00 0.00 5.36
6786 7068 0.322726 TAAAGCCCCCGTAAAGTGCC 60.323 55.000 0.00 0.00 0.00 5.01
6787 7069 0.806868 GTAAAGCCCCCGTAAAGTGC 59.193 55.000 0.00 0.00 0.00 4.40
6788 7070 1.081094 CGTAAAGCCCCCGTAAAGTG 58.919 55.000 0.00 0.00 0.00 3.16
6789 7071 0.036105 CCGTAAAGCCCCCGTAAAGT 60.036 55.000 0.00 0.00 0.00 2.66
6790 7072 0.249955 TCCGTAAAGCCCCCGTAAAG 59.750 55.000 0.00 0.00 0.00 1.85
6791 7073 0.036483 GTCCGTAAAGCCCCCGTAAA 60.036 55.000 0.00 0.00 0.00 2.01
6792 7074 0.904394 AGTCCGTAAAGCCCCCGTAA 60.904 55.000 0.00 0.00 0.00 3.18
6793 7075 0.033601 TAGTCCGTAAAGCCCCCGTA 60.034 55.000 0.00 0.00 0.00 4.02
6794 7076 0.904394 TTAGTCCGTAAAGCCCCCGT 60.904 55.000 0.00 0.00 0.00 5.28
6795 7077 0.466963 ATTAGTCCGTAAAGCCCCCG 59.533 55.000 0.00 0.00 0.00 5.73
6796 7078 2.723322 AATTAGTCCGTAAAGCCCCC 57.277 50.000 0.00 0.00 0.00 5.40
6797 7079 4.343239 TCTCTAATTAGTCCGTAAAGCCCC 59.657 45.833 12.19 0.00 0.00 5.80
6798 7080 5.526506 TCTCTAATTAGTCCGTAAAGCCC 57.473 43.478 12.19 0.00 0.00 5.19
6799 7081 9.708092 ATTAATCTCTAATTAGTCCGTAAAGCC 57.292 33.333 12.19 0.00 0.00 4.35
6802 7084 9.485206 GCCATTAATCTCTAATTAGTCCGTAAA 57.515 33.333 12.19 2.74 0.00 2.01
6803 7085 8.867097 AGCCATTAATCTCTAATTAGTCCGTAA 58.133 33.333 12.19 7.78 0.00 3.18
6804 7086 8.304596 CAGCCATTAATCTCTAATTAGTCCGTA 58.695 37.037 12.19 0.00 0.00 4.02
6805 7087 7.155328 CAGCCATTAATCTCTAATTAGTCCGT 58.845 38.462 12.19 0.55 0.00 4.69
6806 7088 7.116948 CACAGCCATTAATCTCTAATTAGTCCG 59.883 40.741 12.19 3.20 0.00 4.79
6807 7089 8.150945 TCACAGCCATTAATCTCTAATTAGTCC 58.849 37.037 12.19 0.00 0.00 3.85
6808 7090 9.717942 ATCACAGCCATTAATCTCTAATTAGTC 57.282 33.333 12.19 0.00 0.00 2.59
6812 7094 8.985315 TGAATCACAGCCATTAATCTCTAATT 57.015 30.769 0.00 0.00 0.00 1.40
6813 7095 8.618702 CTGAATCACAGCCATTAATCTCTAAT 57.381 34.615 0.00 0.00 39.86 1.73
6829 7111 3.556213 CCGTCCCACTTAACTGAATCACA 60.556 47.826 0.00 0.00 0.00 3.58
6830 7112 3.000727 CCGTCCCACTTAACTGAATCAC 58.999 50.000 0.00 0.00 0.00 3.06
6831 7113 2.027561 CCCGTCCCACTTAACTGAATCA 60.028 50.000 0.00 0.00 0.00 2.57
6832 7114 2.629051 CCCGTCCCACTTAACTGAATC 58.371 52.381 0.00 0.00 0.00 2.52
6833 7115 1.339727 GCCCGTCCCACTTAACTGAAT 60.340 52.381 0.00 0.00 0.00 2.57
6834 7116 0.035739 GCCCGTCCCACTTAACTGAA 59.964 55.000 0.00 0.00 0.00 3.02
6835 7117 1.675219 GCCCGTCCCACTTAACTGA 59.325 57.895 0.00 0.00 0.00 3.41
6836 7118 1.376812 GGCCCGTCCCACTTAACTG 60.377 63.158 0.00 0.00 0.00 3.16
6837 7119 3.075186 GGCCCGTCCCACTTAACT 58.925 61.111 0.00 0.00 0.00 2.24
6847 7129 2.414658 TTTAAGTGGTGGGGCCCGTC 62.415 60.000 19.83 13.62 36.04 4.79
6848 7130 2.009208 TTTTAAGTGGTGGGGCCCGT 62.009 55.000 19.83 0.79 36.04 5.28
6849 7131 0.613572 ATTTTAAGTGGTGGGGCCCG 60.614 55.000 19.83 0.00 36.04 6.13
6850 7132 1.191535 GATTTTAAGTGGTGGGGCCC 58.808 55.000 18.17 18.17 36.04 5.80
6851 7133 1.824852 CTGATTTTAAGTGGTGGGGCC 59.175 52.381 0.00 0.00 37.90 5.80
6852 7134 2.755103 CTCTGATTTTAAGTGGTGGGGC 59.245 50.000 0.00 0.00 0.00 5.80
6853 7135 3.356290 CCTCTGATTTTAAGTGGTGGGG 58.644 50.000 0.00 0.00 0.00 4.96
6854 7136 3.010138 TCCCTCTGATTTTAAGTGGTGGG 59.990 47.826 0.00 0.00 0.00 4.61
6855 7137 4.265073 CTCCCTCTGATTTTAAGTGGTGG 58.735 47.826 0.00 0.00 0.00 4.61
6856 7138 3.691609 GCTCCCTCTGATTTTAAGTGGTG 59.308 47.826 0.00 0.00 0.00 4.17
6857 7139 3.308473 GGCTCCCTCTGATTTTAAGTGGT 60.308 47.826 0.00 0.00 0.00 4.16
6858 7140 3.282885 GGCTCCCTCTGATTTTAAGTGG 58.717 50.000 0.00 0.00 0.00 4.00
6859 7141 3.955471 TGGCTCCCTCTGATTTTAAGTG 58.045 45.455 0.00 0.00 0.00 3.16
6860 7142 4.657814 TTGGCTCCCTCTGATTTTAAGT 57.342 40.909 0.00 0.00 0.00 2.24
6861 7143 7.056635 TCTAATTGGCTCCCTCTGATTTTAAG 58.943 38.462 0.00 0.00 0.00 1.85
6862 7144 6.969043 TCTAATTGGCTCCCTCTGATTTTAA 58.031 36.000 0.00 0.00 0.00 1.52
6863 7145 6.575244 TCTAATTGGCTCCCTCTGATTTTA 57.425 37.500 0.00 0.00 0.00 1.52
6864 7146 5.456921 TCTAATTGGCTCCCTCTGATTTT 57.543 39.130 0.00 0.00 0.00 1.82
6865 7147 5.659849 ATCTAATTGGCTCCCTCTGATTT 57.340 39.130 0.00 0.00 0.00 2.17
6866 7148 5.659849 AATCTAATTGGCTCCCTCTGATT 57.340 39.130 0.00 0.00 0.00 2.57
6867 7149 5.280419 GCTAATCTAATTGGCTCCCTCTGAT 60.280 44.000 1.29 0.00 42.63 2.90
6868 7150 4.040952 GCTAATCTAATTGGCTCCCTCTGA 59.959 45.833 1.29 0.00 42.63 3.27
6869 7151 4.322567 GCTAATCTAATTGGCTCCCTCTG 58.677 47.826 1.29 0.00 42.63 3.35
6870 7152 3.007398 CGCTAATCTAATTGGCTCCCTCT 59.993 47.826 6.48 0.00 43.59 3.69
6871 7153 3.330267 CGCTAATCTAATTGGCTCCCTC 58.670 50.000 6.48 0.00 43.59 4.30
6872 7154 2.551071 GCGCTAATCTAATTGGCTCCCT 60.551 50.000 0.00 0.00 43.59 4.20
6873 7155 1.807142 GCGCTAATCTAATTGGCTCCC 59.193 52.381 0.00 0.00 43.59 4.30
6874 7156 2.494059 TGCGCTAATCTAATTGGCTCC 58.506 47.619 9.73 0.00 43.59 4.70
6875 7157 3.499918 ACATGCGCTAATCTAATTGGCTC 59.500 43.478 9.73 0.00 43.59 4.70
6876 7158 3.480470 ACATGCGCTAATCTAATTGGCT 58.520 40.909 9.73 0.00 43.59 4.75
6877 7159 3.904136 ACATGCGCTAATCTAATTGGC 57.096 42.857 9.73 0.00 42.51 4.52
6878 7160 5.334414 GGAGAACATGCGCTAATCTAATTGG 60.334 44.000 9.73 0.00 0.00 3.16
6879 7161 5.237127 TGGAGAACATGCGCTAATCTAATTG 59.763 40.000 9.73 0.00 0.00 2.32
6880 7162 5.237344 GTGGAGAACATGCGCTAATCTAATT 59.763 40.000 9.73 0.00 0.00 1.40
6881 7163 4.752101 GTGGAGAACATGCGCTAATCTAAT 59.248 41.667 9.73 0.00 0.00 1.73
6882 7164 4.119862 GTGGAGAACATGCGCTAATCTAA 58.880 43.478 9.73 0.00 0.00 2.10
6883 7165 3.492656 GGTGGAGAACATGCGCTAATCTA 60.493 47.826 9.73 0.00 0.00 1.98
6884 7166 2.555199 GTGGAGAACATGCGCTAATCT 58.445 47.619 9.73 7.13 0.00 2.40
6885 7167 1.599542 GGTGGAGAACATGCGCTAATC 59.400 52.381 9.73 1.67 0.00 1.75
6886 7168 1.668419 GGTGGAGAACATGCGCTAAT 58.332 50.000 9.73 0.00 0.00 1.73
6887 7169 0.392461 GGGTGGAGAACATGCGCTAA 60.392 55.000 9.73 0.00 0.00 3.09
6888 7170 1.220749 GGGTGGAGAACATGCGCTA 59.779 57.895 9.73 0.00 0.00 4.26
6889 7171 2.045926 GGGTGGAGAACATGCGCT 60.046 61.111 9.73 0.00 0.00 5.92
6890 7172 3.134127 GGGGTGGAGAACATGCGC 61.134 66.667 0.00 0.00 0.00 6.09
6891 7173 2.819595 CGGGGTGGAGAACATGCG 60.820 66.667 0.00 0.00 0.00 4.73
6892 7174 2.040544 CACGGGGTGGAGAACATGC 61.041 63.158 0.00 0.00 0.00 4.06
6893 7175 0.036164 TTCACGGGGTGGAGAACATG 59.964 55.000 0.00 0.00 33.87 3.21
6894 7176 0.768622 TTTCACGGGGTGGAGAACAT 59.231 50.000 0.00 0.00 33.87 2.71
6895 7177 0.107831 CTTTCACGGGGTGGAGAACA 59.892 55.000 0.00 0.00 33.87 3.18
6896 7178 0.108019 ACTTTCACGGGGTGGAGAAC 59.892 55.000 0.00 0.00 33.87 3.01
6897 7179 0.395312 GACTTTCACGGGGTGGAGAA 59.605 55.000 0.00 0.00 33.87 2.87
6898 7180 1.477685 GGACTTTCACGGGGTGGAGA 61.478 60.000 0.00 0.00 33.87 3.71
6899 7181 1.003718 GGACTTTCACGGGGTGGAG 60.004 63.158 0.00 0.00 33.87 3.86
6900 7182 2.874664 CGGACTTTCACGGGGTGGA 61.875 63.158 0.00 0.00 33.87 4.02
6901 7183 2.358247 CGGACTTTCACGGGGTGG 60.358 66.667 0.00 0.00 33.87 4.61
6902 7184 1.227734 AACGGACTTTCACGGGGTG 60.228 57.895 0.00 0.00 34.45 4.61
6903 7185 1.227734 CAACGGACTTTCACGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
6904 7186 0.533308 TTCAACGGACTTTCACGGGG 60.533 55.000 0.00 0.00 0.00 5.73
6905 7187 1.519408 ATTCAACGGACTTTCACGGG 58.481 50.000 0.00 0.00 0.00 5.28
6906 7188 3.296628 CAAATTCAACGGACTTTCACGG 58.703 45.455 0.00 0.00 0.00 4.94
6907 7189 2.719046 GCAAATTCAACGGACTTTCACG 59.281 45.455 0.00 0.00 0.00 4.35
6908 7190 3.049912 GGCAAATTCAACGGACTTTCAC 58.950 45.455 0.00 0.00 0.00 3.18
6909 7191 2.955660 AGGCAAATTCAACGGACTTTCA 59.044 40.909 0.00 0.00 0.00 2.69
6910 7192 3.243401 ACAGGCAAATTCAACGGACTTTC 60.243 43.478 0.00 0.00 0.00 2.62
6911 7193 2.693074 ACAGGCAAATTCAACGGACTTT 59.307 40.909 0.00 0.00 0.00 2.66
6912 7194 2.034558 CACAGGCAAATTCAACGGACTT 59.965 45.455 0.00 0.00 0.00 3.01
6913 7195 1.608590 CACAGGCAAATTCAACGGACT 59.391 47.619 0.00 0.00 0.00 3.85
6914 7196 1.606668 TCACAGGCAAATTCAACGGAC 59.393 47.619 0.00 0.00 0.00 4.79
6915 7197 1.974265 TCACAGGCAAATTCAACGGA 58.026 45.000 0.00 0.00 0.00 4.69
6916 7198 2.791383 TTCACAGGCAAATTCAACGG 57.209 45.000 0.00 0.00 0.00 4.44
6917 7199 3.641648 ACATTCACAGGCAAATTCAACG 58.358 40.909 0.00 0.00 0.00 4.10
6918 7200 5.772521 ACTACATTCACAGGCAAATTCAAC 58.227 37.500 0.00 0.00 0.00 3.18
6919 7201 7.701539 ATACTACATTCACAGGCAAATTCAA 57.298 32.000 0.00 0.00 0.00 2.69
6920 7202 7.701539 AATACTACATTCACAGGCAAATTCA 57.298 32.000 0.00 0.00 0.00 2.57
6921 7203 9.884465 GATAATACTACATTCACAGGCAAATTC 57.116 33.333 0.00 0.00 0.00 2.17
6922 7204 8.559536 CGATAATACTACATTCACAGGCAAATT 58.440 33.333 0.00 0.00 0.00 1.82
6923 7205 7.931407 TCGATAATACTACATTCACAGGCAAAT 59.069 33.333 0.00 0.00 0.00 2.32
6924 7206 7.269316 TCGATAATACTACATTCACAGGCAAA 58.731 34.615 0.00 0.00 0.00 3.68
6925 7207 6.811954 TCGATAATACTACATTCACAGGCAA 58.188 36.000 0.00 0.00 0.00 4.52
6926 7208 6.399639 TCGATAATACTACATTCACAGGCA 57.600 37.500 0.00 0.00 0.00 4.75
6927 7209 9.239002 GATATCGATAATACTACATTCACAGGC 57.761 37.037 9.61 0.00 0.00 4.85
6928 7210 9.737427 GGATATCGATAATACTACATTCACAGG 57.263 37.037 9.61 0.00 0.00 4.00
6936 7218 9.743581 TGGTAGTTGGATATCGATAATACTACA 57.256 33.333 27.96 19.86 38.79 2.74
6939 7221 9.924650 GTTTGGTAGTTGGATATCGATAATACT 57.075 33.333 9.61 11.95 0.00 2.12
6940 7222 9.924650 AGTTTGGTAGTTGGATATCGATAATAC 57.075 33.333 9.61 1.78 0.00 1.89
6941 7223 9.923143 CAGTTTGGTAGTTGGATATCGATAATA 57.077 33.333 9.61 0.00 0.00 0.98
6942 7224 8.429641 ACAGTTTGGTAGTTGGATATCGATAAT 58.570 33.333 9.61 0.00 0.00 1.28
6943 7225 7.709182 CACAGTTTGGTAGTTGGATATCGATAA 59.291 37.037 9.61 0.00 0.00 1.75
6944 7226 7.207383 CACAGTTTGGTAGTTGGATATCGATA 58.793 38.462 7.75 7.75 0.00 2.92
6945 7227 6.049149 CACAGTTTGGTAGTTGGATATCGAT 58.951 40.000 2.16 2.16 0.00 3.59
6946 7228 5.416083 CACAGTTTGGTAGTTGGATATCGA 58.584 41.667 0.00 0.00 0.00 3.59
6947 7229 4.034048 GCACAGTTTGGTAGTTGGATATCG 59.966 45.833 0.00 0.00 0.00 2.92
6948 7230 4.941263 TGCACAGTTTGGTAGTTGGATATC 59.059 41.667 0.00 0.00 0.00 1.63
6949 7231 4.700213 GTGCACAGTTTGGTAGTTGGATAT 59.300 41.667 13.17 0.00 0.00 1.63
6950 7232 4.069304 GTGCACAGTTTGGTAGTTGGATA 58.931 43.478 13.17 0.00 0.00 2.59
6951 7233 2.884639 GTGCACAGTTTGGTAGTTGGAT 59.115 45.455 13.17 0.00 0.00 3.41
6952 7234 2.294074 GTGCACAGTTTGGTAGTTGGA 58.706 47.619 13.17 0.00 0.00 3.53
6953 7235 1.336755 GGTGCACAGTTTGGTAGTTGG 59.663 52.381 20.43 0.00 0.00 3.77
6954 7236 1.336755 GGGTGCACAGTTTGGTAGTTG 59.663 52.381 20.43 0.00 0.00 3.16
6955 7237 1.687563 GGGTGCACAGTTTGGTAGTT 58.312 50.000 20.43 0.00 0.00 2.24
6956 7238 0.534203 CGGGTGCACAGTTTGGTAGT 60.534 55.000 20.43 0.00 0.00 2.73
7042 7324 1.277273 GGGCTACAAACTAACGAGGGT 59.723 52.381 0.00 0.00 0.00 4.34
7129 7411 8.173130 GTGAAACGACGAAAGGAAAATATGTAT 58.827 33.333 0.00 0.00 0.00 2.29
7130 7412 7.385752 AGTGAAACGACGAAAGGAAAATATGTA 59.614 33.333 0.00 0.00 45.86 2.29
7131 7413 6.204108 AGTGAAACGACGAAAGGAAAATATGT 59.796 34.615 0.00 0.00 45.86 2.29
7202 7496 0.882042 CTTGACTGTTCGGTGCAGCT 60.882 55.000 14.92 0.00 37.47 4.24
7209 7503 0.247736 CTCTCCCCTTGACTGTTCGG 59.752 60.000 0.00 0.00 0.00 4.30
7218 7512 0.111253 AACAACCAGCTCTCCCCTTG 59.889 55.000 0.00 0.00 0.00 3.61
7303 7611 2.928334 ACTGCAGCCATGAAATCTAGG 58.072 47.619 15.27 0.00 0.00 3.02
7305 7613 5.294734 TCATACTGCAGCCATGAAATCTA 57.705 39.130 22.72 3.04 0.00 1.98
7383 7692 2.610374 TCTTTGACCGTTGAAAAGTCCG 59.390 45.455 0.00 0.00 33.56 4.79
7452 7761 3.951663 ACACTTACCAGGATTAGCCAAC 58.048 45.455 0.00 0.00 40.02 3.77
7472 7781 4.156182 GTGCAGGTGCGTAATAGAAAAAC 58.844 43.478 0.00 0.00 45.83 2.43
7483 7792 0.528924 TAATACTCGTGCAGGTGCGT 59.471 50.000 6.26 5.33 45.83 5.24
7484 7793 1.635844 TTAATACTCGTGCAGGTGCG 58.364 50.000 6.26 0.00 45.83 5.34
7485 7794 3.374058 ACAATTAATACTCGTGCAGGTGC 59.626 43.478 6.26 0.00 42.50 5.01
7486 7795 4.870426 AGACAATTAATACTCGTGCAGGTG 59.130 41.667 6.26 6.61 0.00 4.00
7508 7821 0.803768 CCGGTGAATCGACAGAGCAG 60.804 60.000 0.00 0.00 0.00 4.24
7514 7827 1.202256 CGAGAATCCGGTGAATCGACA 60.202 52.381 13.88 0.00 30.84 4.35
7539 7854 1.377725 CACCCCTGGTCATGACAGC 60.378 63.158 26.47 11.33 31.02 4.40
7648 7963 1.001706 GAACCAACGAAAACAGGGCTC 60.002 52.381 0.00 0.00 0.00 4.70
7931 8265 1.007271 AACGCAGACAGACAGACGG 60.007 57.895 0.00 0.00 0.00 4.79
7986 8324 3.740115 TGAAAAAGGAAAGGGTCTCTCG 58.260 45.455 0.00 0.00 0.00 4.04
7993 8331 4.605640 TTCATGCTGAAAAAGGAAAGGG 57.394 40.909 0.00 0.00 32.71 3.95
7994 8332 5.846203 TCTTTCATGCTGAAAAAGGAAAGG 58.154 37.500 10.84 0.95 44.69 3.11
8063 8406 3.622163 TGCCAATGTTGAGCAAAAACAAG 59.378 39.130 3.43 0.85 40.69 3.16
8214 8561 5.482908 TCTACAGCCAGAGAGAAATCAAAC 58.517 41.667 0.00 0.00 0.00 2.93
8219 8578 5.753721 AGTTTCTACAGCCAGAGAGAAAT 57.246 39.130 0.00 0.00 39.43 2.17
8280 8646 4.533707 TCAAGAGGATGGATGGATGGATAC 59.466 45.833 0.00 0.00 0.00 2.24
8366 8732 0.041576 GACAACGGAAAAGACGGCAC 60.042 55.000 0.00 0.00 35.23 5.01
8376 8742 3.994392 GCAAAGATAGTCAGACAACGGAA 59.006 43.478 2.66 0.00 0.00 4.30
8386 8752 5.011125 GCCCTGATAGTAGCAAAGATAGTCA 59.989 44.000 0.00 0.00 0.00 3.41
8388 8754 4.901849 TGCCCTGATAGTAGCAAAGATAGT 59.098 41.667 0.00 0.00 30.97 2.12
8389 8755 5.474578 TGCCCTGATAGTAGCAAAGATAG 57.525 43.478 0.00 0.00 30.97 2.08
8405 8784 2.220786 AAATGGAGGAGGCTGCCCTG 62.221 60.000 16.57 0.00 43.12 4.45
8469 8848 8.120465 CGGTAGTGATTATTTATTTTCGCAACT 58.880 33.333 0.00 0.00 0.00 3.16
8504 8886 7.065803 GGATCTAAAAACTTGAACATCCGATGA 59.934 37.037 15.47 0.00 0.00 2.92
8533 8918 1.344114 GGCTGGCAACTTTTGGAATCA 59.656 47.619 0.00 0.00 37.61 2.57
8557 8942 3.679389 AGGAGGTCTTTTGCATGTACAG 58.321 45.455 0.33 0.00 0.00 2.74
8571 8956 0.980423 ACTGGAAGCTGAAGGAGGTC 59.020 55.000 0.00 0.00 37.60 3.85
8576 8961 1.206849 GGAGAGACTGGAAGCTGAAGG 59.793 57.143 0.00 0.00 37.60 3.46
8580 8965 1.622811 AGTTGGAGAGACTGGAAGCTG 59.377 52.381 0.00 0.00 37.60 4.24
8593 8978 3.820557 TGACAAAAAGGAGGAGTTGGAG 58.179 45.455 0.00 0.00 0.00 3.86
8594 8979 3.943671 TGACAAAAAGGAGGAGTTGGA 57.056 42.857 0.00 0.00 0.00 3.53
8595 8980 4.022849 GTCATGACAAAAAGGAGGAGTTGG 60.023 45.833 21.07 0.00 0.00 3.77
8596 8981 4.319766 CGTCATGACAAAAAGGAGGAGTTG 60.320 45.833 24.93 0.00 0.00 3.16
8597 8982 3.815401 CGTCATGACAAAAAGGAGGAGTT 59.185 43.478 24.93 0.00 0.00 3.01
8598 8983 3.403038 CGTCATGACAAAAAGGAGGAGT 58.597 45.455 24.93 0.00 0.00 3.85
8599 8984 2.744202 CCGTCATGACAAAAAGGAGGAG 59.256 50.000 24.93 4.51 0.00 3.69
8600 8985 2.778299 CCGTCATGACAAAAAGGAGGA 58.222 47.619 24.93 0.00 0.00 3.71
8601 8986 1.200020 GCCGTCATGACAAAAAGGAGG 59.800 52.381 24.93 15.63 0.00 4.30
8602 8987 1.200020 GGCCGTCATGACAAAAAGGAG 59.800 52.381 24.93 6.41 0.00 3.69
8603 8988 1.202879 AGGCCGTCATGACAAAAAGGA 60.203 47.619 24.93 0.00 0.00 3.36
8604 8989 1.200020 GAGGCCGTCATGACAAAAAGG 59.800 52.381 24.93 17.65 0.00 3.11
8605 8990 1.879380 TGAGGCCGTCATGACAAAAAG 59.121 47.619 24.93 8.54 0.00 2.27
8606 8991 1.974265 TGAGGCCGTCATGACAAAAA 58.026 45.000 24.93 3.01 0.00 1.94
8607 8992 1.974265 TTGAGGCCGTCATGACAAAA 58.026 45.000 24.93 7.12 34.17 2.44
8608 8993 1.606668 GTTTGAGGCCGTCATGACAAA 59.393 47.619 24.93 13.61 34.17 2.83
8609 8994 1.202758 AGTTTGAGGCCGTCATGACAA 60.203 47.619 24.93 8.26 34.17 3.18
8610 8995 0.396435 AGTTTGAGGCCGTCATGACA 59.604 50.000 24.93 1.85 34.17 3.58
8611 8996 1.197721 CAAGTTTGAGGCCGTCATGAC 59.802 52.381 16.21 16.21 34.17 3.06
8612 8997 1.202758 ACAAGTTTGAGGCCGTCATGA 60.203 47.619 0.00 0.00 34.17 3.07
8613 8998 1.197721 GACAAGTTTGAGGCCGTCATG 59.802 52.381 0.00 0.00 34.17 3.07
8614 8999 1.523758 GACAAGTTTGAGGCCGTCAT 58.476 50.000 0.00 0.00 34.17 3.06
8615 9000 0.534203 GGACAAGTTTGAGGCCGTCA 60.534 55.000 0.00 0.00 0.00 4.35
8616 9001 0.534203 TGGACAAGTTTGAGGCCGTC 60.534 55.000 0.00 0.00 0.00 4.79
8617 9002 0.110486 ATGGACAAGTTTGAGGCCGT 59.890 50.000 0.00 0.00 0.00 5.68
8618 9003 0.804989 GATGGACAAGTTTGAGGCCG 59.195 55.000 0.00 0.00 0.00 6.13
8619 9004 1.909700 TGATGGACAAGTTTGAGGCC 58.090 50.000 0.00 0.00 0.00 5.19
8620 9005 3.350833 AGATGATGGACAAGTTTGAGGC 58.649 45.455 0.00 0.00 0.00 4.70
8621 9006 4.157289 CCAAGATGATGGACAAGTTTGAGG 59.843 45.833 0.00 0.00 43.54 3.86
8622 9007 5.306532 CCAAGATGATGGACAAGTTTGAG 57.693 43.478 0.00 0.00 43.54 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.