Multiple sequence alignment - TraesCS5D01G565000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G565000 chr5D 100.000 3439 0 0 1 3439 563728293 563724855 0.000000e+00 6351.0
1 TraesCS5D01G565000 chr5D 86.169 1446 101 44 1264 2664 563639733 563638342 0.000000e+00 1471.0
2 TraesCS5D01G565000 chr5D 91.463 246 21 0 1028 1273 563639999 563639754 4.250000e-89 339.0
3 TraesCS5D01G565000 chr5D 85.606 132 17 2 2901 3031 399960261 399960391 1.660000e-28 137.0
4 TraesCS5D01G565000 chr5D 92.771 83 6 0 3147 3229 563719978 563719896 1.680000e-23 121.0
5 TraesCS5D01G565000 chr5D 90.667 75 7 0 3145 3219 399960481 399960555 2.180000e-17 100.0
6 TraesCS5D01G565000 chr5D 86.842 76 9 1 2291 2365 563974958 563975033 2.200000e-12 84.2
7 TraesCS5D01G565000 chr4A 88.700 1708 107 43 995 2690 608866784 608868417 0.000000e+00 2006.0
8 TraesCS5D01G565000 chr4A 84.000 325 20 17 2959 3262 608868679 608868992 2.020000e-72 283.0
9 TraesCS5D01G565000 chr4A 98.020 101 2 0 2699 2799 608868495 608868595 3.530000e-40 176.0
10 TraesCS5D01G565000 chr4A 94.444 54 1 2 2896 2948 608868636 608868688 7.910000e-12 82.4
11 TraesCS5D01G565000 chr5B 88.035 1613 106 34 995 2568 706156863 706155299 0.000000e+00 1829.0
12 TraesCS5D01G565000 chr5B 84.343 792 42 34 2699 3428 705977930 705977159 0.000000e+00 701.0
13 TraesCS5D01G565000 chr5B 88.191 398 24 9 2314 2690 705978419 705978024 1.460000e-123 453.0
14 TraesCS5D01G565000 chr5B 80.666 631 57 31 2045 2655 705947104 705946519 2.450000e-116 429.0
15 TraesCS5D01G565000 chr5B 82.383 386 37 20 1666 2039 705964676 705964310 1.200000e-79 307.0
16 TraesCS5D01G565000 chr5B 88.535 157 14 4 2314 2467 706044500 706044345 1.630000e-43 187.0
17 TraesCS5D01G565000 chr5B 85.870 184 8 6 3258 3431 706155268 706155093 2.730000e-41 180.0
18 TraesCS5D01G565000 chr5B 86.364 132 16 2 2901 3031 479839952 479840082 3.580000e-30 143.0
19 TraesCS5D01G565000 chr5B 86.585 82 11 0 3138 3219 479840160 479840241 1.310000e-14 91.6
20 TraesCS5D01G565000 chr5B 86.250 80 8 1 2318 2397 479859395 479859471 2.200000e-12 84.2
21 TraesCS5D01G565000 chr2A 85.461 564 72 5 126 687 190410605 190411160 2.300000e-161 579.0
22 TraesCS5D01G565000 chr2A 86.400 125 17 0 3 127 333997908 333997784 1.660000e-28 137.0
23 TraesCS5D01G565000 chr2A 85.714 119 17 0 2909 3027 710364332 710364450 3.600000e-25 126.0
24 TraesCS5D01G565000 chr2D 83.422 567 71 10 126 690 177555421 177555966 3.960000e-139 505.0
25 TraesCS5D01G565000 chr2D 94.215 121 7 0 3 123 177555247 177555367 5.860000e-43 185.0
26 TraesCS5D01G565000 chr2D 86.555 119 16 0 2909 3027 571883918 571884036 7.740000e-27 132.0
27 TraesCS5D01G565000 chr2B 83.002 553 72 16 126 673 234597081 234597616 6.680000e-132 481.0
28 TraesCS5D01G565000 chr2B 94.000 100 6 0 3 102 234596927 234597026 5.940000e-33 152.0
29 TraesCS5D01G565000 chr2B 85.714 119 17 0 2909 3027 683759508 683759626 3.600000e-25 126.0
30 TraesCS5D01G565000 chr7B 83.969 262 36 4 432 690 315298723 315298981 2.650000e-61 246.0
31 TraesCS5D01G565000 chr7B 87.805 123 14 1 3 125 394393444 394393565 3.580000e-30 143.0
32 TraesCS5D01G565000 chr6D 88.889 180 16 4 513 690 57781820 57781643 5.780000e-53 219.0
33 TraesCS5D01G565000 chr3A 80.488 287 42 11 357 635 399607450 399607730 1.250000e-49 207.0
34 TraesCS5D01G565000 chr3A 80.488 287 42 11 357 635 403980959 403981239 1.250000e-49 207.0
35 TraesCS5D01G565000 chr6A 80.139 287 43 11 357 635 121645478 121645758 5.820000e-48 202.0
36 TraesCS5D01G565000 chr5A 79.931 289 46 10 357 638 308145826 308145543 5.820000e-48 202.0
37 TraesCS5D01G565000 chr5A 87.805 123 11 4 2901 3021 505535428 505535548 1.290000e-29 141.0
38 TraesCS5D01G565000 chr5A 90.667 75 7 0 3145 3219 505535651 505535725 2.180000e-17 100.0
39 TraesCS5D01G565000 chr7D 81.048 248 35 9 352 595 206133697 206133936 1.630000e-43 187.0
40 TraesCS5D01G565000 chr1D 83.582 67 11 0 2952 3018 494561358 494561424 2.870000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G565000 chr5D 563724855 563728293 3438 True 6351.00 6351 100.0000 1 3439 1 chr5D.!!$R2 3438
1 TraesCS5D01G565000 chr5D 563638342 563639999 1657 True 905.00 1471 88.8160 1028 2664 2 chr5D.!!$R3 1636
2 TraesCS5D01G565000 chr4A 608866784 608868992 2208 False 636.85 2006 91.2910 995 3262 4 chr4A.!!$F1 2267
3 TraesCS5D01G565000 chr5B 706155093 706156863 1770 True 1004.50 1829 86.9525 995 3431 2 chr5B.!!$R5 2436
4 TraesCS5D01G565000 chr5B 705977159 705978419 1260 True 577.00 701 86.2670 2314 3428 2 chr5B.!!$R4 1114
5 TraesCS5D01G565000 chr5B 705946519 705947104 585 True 429.00 429 80.6660 2045 2655 1 chr5B.!!$R1 610
6 TraesCS5D01G565000 chr2A 190410605 190411160 555 False 579.00 579 85.4610 126 687 1 chr2A.!!$F1 561
7 TraesCS5D01G565000 chr2D 177555247 177555966 719 False 345.00 505 88.8185 3 690 2 chr2D.!!$F2 687
8 TraesCS5D01G565000 chr2B 234596927 234597616 689 False 316.50 481 88.5010 3 673 2 chr2B.!!$F2 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 776 0.035439 ACGATGCTACTTGGGGTTGG 60.035 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2611 0.252197 TCATGGAGAGGAGACGACGA 59.748 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.046950 GGAAGTCTACACATCTCAGTTTCCT 60.047 44.000 0.00 0.00 0.00 3.36
102 103 1.202830 TCGGGCAAATGTGGTTGTACT 60.203 47.619 0.00 0.00 0.00 2.73
105 106 2.825532 GGGCAAATGTGGTTGTACTGAT 59.174 45.455 0.00 0.00 0.00 2.90
109 110 4.917415 GCAAATGTGGTTGTACTGATGAAC 59.083 41.667 0.00 0.00 0.00 3.18
118 119 5.008316 GGTTGTACTGATGAACTTCGGTTTT 59.992 40.000 7.32 0.00 38.41 2.43
123 124 2.034053 TGATGAACTTCGGTTTTGTGGC 59.966 45.455 0.00 0.00 38.41 5.01
124 125 1.464734 TGAACTTCGGTTTTGTGGCA 58.535 45.000 0.00 0.00 38.41 4.92
131 185 0.174617 CGGTTTTGTGGCACCAACTT 59.825 50.000 22.09 0.00 31.84 2.66
134 188 3.491792 CGGTTTTGTGGCACCAACTTTAT 60.492 43.478 22.09 0.00 31.84 1.40
141 195 5.381757 TGTGGCACCAACTTTATTCTACTT 58.618 37.500 16.26 0.00 0.00 2.24
143 197 6.653320 TGTGGCACCAACTTTATTCTACTTAG 59.347 38.462 16.26 0.00 0.00 2.18
149 203 8.443937 CACCAACTTTATTCTACTTAGCTCAAC 58.556 37.037 0.00 0.00 0.00 3.18
151 205 9.220767 CCAACTTTATTCTACTTAGCTCAACTT 57.779 33.333 0.00 0.00 0.00 2.66
165 219 8.988064 TTAGCTCAACTTATGTTACTCTCAAG 57.012 34.615 0.00 0.00 34.60 3.02
177 231 3.857157 ACTCTCAAGTTAAAGTGCCCA 57.143 42.857 0.00 0.00 28.74 5.36
181 235 4.787551 TCTCAAGTTAAAGTGCCCAAAGA 58.212 39.130 0.00 0.00 0.00 2.52
194 248 5.128008 AGTGCCCAAAGAAGACTACTATCTC 59.872 44.000 0.00 0.00 0.00 2.75
215 269 6.062095 TCTCAAGTAAAGTCTTTCCCCAAAG 58.938 40.000 0.00 0.00 40.56 2.77
240 294 6.293790 GGGTGTCCTTGTCACTATTGTTTTAC 60.294 42.308 0.00 0.00 36.25 2.01
241 295 6.293790 GGTGTCCTTGTCACTATTGTTTTACC 60.294 42.308 0.00 0.00 36.25 2.85
244 298 5.472137 TCCTTGTCACTATTGTTTTACCTGC 59.528 40.000 0.00 0.00 0.00 4.85
260 314 4.156455 ACCTGCTAGGGTTTATGTGATG 57.844 45.455 7.06 0.00 40.58 3.07
262 316 3.480470 CTGCTAGGGTTTATGTGATGGG 58.520 50.000 0.00 0.00 0.00 4.00
271 325 7.418378 AGGGTTTATGTGATGGGAAGAAATTA 58.582 34.615 0.00 0.00 0.00 1.40
274 328 7.123547 GGTTTATGTGATGGGAAGAAATTACCA 59.876 37.037 0.00 0.00 37.41 3.25
278 332 6.074648 TGTGATGGGAAGAAATTACCAGTTT 58.925 36.000 0.00 0.00 36.27 2.66
279 333 7.235079 TGTGATGGGAAGAAATTACCAGTTTA 58.765 34.615 0.00 0.00 36.27 2.01
280 334 7.726291 TGTGATGGGAAGAAATTACCAGTTTAA 59.274 33.333 0.00 0.00 36.27 1.52
314 368 7.390440 CCAATAGTTTCAACAGTAATGAGGTGA 59.610 37.037 0.00 0.00 0.00 4.02
315 369 7.907214 ATAGTTTCAACAGTAATGAGGTGAC 57.093 36.000 0.00 0.00 0.00 3.67
334 388 6.097839 AGGTGACTCTCTCTACTACTCTACTG 59.902 46.154 0.00 0.00 32.90 2.74
335 389 5.751990 GTGACTCTCTCTACTACTCTACTGC 59.248 48.000 0.00 0.00 0.00 4.40
408 463 9.922305 GTAGAGCATAAAAGTAAAGCAACATAG 57.078 33.333 0.00 0.00 0.00 2.23
479 534 3.056393 TGCCAGCAAGAAAATGGATGAAG 60.056 43.478 0.00 0.00 36.09 3.02
497 552 4.274147 TGAAGTGGTTTGCCTTGAACTAA 58.726 39.130 0.00 0.00 35.27 2.24
504 559 4.079253 GTTTGCCTTGAACTAATGGAGGA 58.921 43.478 0.00 0.00 0.00 3.71
506 561 5.708736 TTGCCTTGAACTAATGGAGGATA 57.291 39.130 0.00 0.00 0.00 2.59
508 563 6.073447 TGCCTTGAACTAATGGAGGATAAA 57.927 37.500 0.00 0.00 0.00 1.40
509 564 6.489603 TGCCTTGAACTAATGGAGGATAAAA 58.510 36.000 0.00 0.00 0.00 1.52
510 565 6.951198 TGCCTTGAACTAATGGAGGATAAAAA 59.049 34.615 0.00 0.00 0.00 1.94
588 643 9.537848 CAAAGCATTTTCAATAAAGAGCAAATC 57.462 29.630 0.00 0.00 35.03 2.17
590 645 8.836268 AGCATTTTCAATAAAGAGCAAATCAA 57.164 26.923 0.00 0.00 32.03 2.57
602 658 7.992754 AAGAGCAAATCAATAAACTCAGTCT 57.007 32.000 0.00 0.00 0.00 3.24
635 693 9.725019 TCTAGACAGCTCAAATAAATCTCAAAA 57.275 29.630 0.00 0.00 0.00 2.44
698 756 7.301054 ACAAAAAGAATCAATTGCTAGACTCG 58.699 34.615 0.00 0.00 0.00 4.18
699 757 7.173218 ACAAAAAGAATCAATTGCTAGACTCGA 59.827 33.333 0.00 0.00 0.00 4.04
700 758 6.654793 AAAGAATCAATTGCTAGACTCGAC 57.345 37.500 0.00 0.00 0.00 4.20
701 759 4.355437 AGAATCAATTGCTAGACTCGACG 58.645 43.478 0.00 0.00 0.00 5.12
702 760 4.096532 AGAATCAATTGCTAGACTCGACGA 59.903 41.667 0.00 0.00 0.00 4.20
703 761 4.576216 ATCAATTGCTAGACTCGACGAT 57.424 40.909 0.00 0.00 0.00 3.73
704 762 3.695816 TCAATTGCTAGACTCGACGATG 58.304 45.455 0.00 0.00 0.00 3.84
705 763 2.126914 ATTGCTAGACTCGACGATGC 57.873 50.000 0.00 0.00 0.00 3.91
706 764 1.095600 TTGCTAGACTCGACGATGCT 58.904 50.000 0.00 1.23 0.00 3.79
707 765 1.949465 TGCTAGACTCGACGATGCTA 58.051 50.000 0.00 2.44 0.00 3.49
708 766 1.598132 TGCTAGACTCGACGATGCTAC 59.402 52.381 0.00 0.24 0.00 3.58
709 767 1.868498 GCTAGACTCGACGATGCTACT 59.132 52.381 0.00 0.00 0.00 2.57
710 768 2.288458 GCTAGACTCGACGATGCTACTT 59.712 50.000 0.00 0.00 0.00 2.24
711 769 2.834574 AGACTCGACGATGCTACTTG 57.165 50.000 0.00 0.00 0.00 3.16
712 770 1.402259 AGACTCGACGATGCTACTTGG 59.598 52.381 0.00 0.00 0.00 3.61
713 771 0.456221 ACTCGACGATGCTACTTGGG 59.544 55.000 0.00 0.00 0.00 4.12
714 772 0.249073 CTCGACGATGCTACTTGGGG 60.249 60.000 0.00 0.00 0.00 4.96
715 773 0.968901 TCGACGATGCTACTTGGGGT 60.969 55.000 0.00 0.00 0.00 4.95
716 774 0.108329 CGACGATGCTACTTGGGGTT 60.108 55.000 0.00 0.00 0.00 4.11
717 775 1.369625 GACGATGCTACTTGGGGTTG 58.630 55.000 0.00 0.00 0.00 3.77
718 776 0.035439 ACGATGCTACTTGGGGTTGG 60.035 55.000 0.00 0.00 0.00 3.77
719 777 0.748005 CGATGCTACTTGGGGTTGGG 60.748 60.000 0.00 0.00 0.00 4.12
720 778 0.331616 GATGCTACTTGGGGTTGGGT 59.668 55.000 0.00 0.00 0.00 4.51
721 779 0.783850 ATGCTACTTGGGGTTGGGTT 59.216 50.000 0.00 0.00 0.00 4.11
722 780 0.178975 TGCTACTTGGGGTTGGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
723 781 0.898326 GCTACTTGGGGTTGGGTTGG 60.898 60.000 0.00 0.00 0.00 3.77
724 782 0.251608 CTACTTGGGGTTGGGTTGGG 60.252 60.000 0.00 0.00 0.00 4.12
725 783 1.000041 TACTTGGGGTTGGGTTGGGT 61.000 55.000 0.00 0.00 0.00 4.51
726 784 1.000041 ACTTGGGGTTGGGTTGGGTA 61.000 55.000 0.00 0.00 0.00 3.69
727 785 0.251608 CTTGGGGTTGGGTTGGGTAG 60.252 60.000 0.00 0.00 0.00 3.18
728 786 1.731324 TTGGGGTTGGGTTGGGTAGG 61.731 60.000 0.00 0.00 0.00 3.18
729 787 1.853565 GGGGTTGGGTTGGGTAGGA 60.854 63.158 0.00 0.00 0.00 2.94
730 788 1.219131 GGGGTTGGGTTGGGTAGGAT 61.219 60.000 0.00 0.00 0.00 3.24
731 789 1.598869 GGGTTGGGTTGGGTAGGATA 58.401 55.000 0.00 0.00 0.00 2.59
732 790 2.141067 GGGTTGGGTTGGGTAGGATAT 58.859 52.381 0.00 0.00 0.00 1.63
733 791 2.158519 GGGTTGGGTTGGGTAGGATATG 60.159 54.545 0.00 0.00 0.00 1.78
734 792 2.158519 GGTTGGGTTGGGTAGGATATGG 60.159 54.545 0.00 0.00 0.00 2.74
735 793 2.781174 GTTGGGTTGGGTAGGATATGGA 59.219 50.000 0.00 0.00 0.00 3.41
736 794 2.414612 TGGGTTGGGTAGGATATGGAC 58.585 52.381 0.00 0.00 0.00 4.02
737 795 2.021441 TGGGTTGGGTAGGATATGGACT 60.021 50.000 0.00 0.00 0.00 3.85
738 796 2.372172 GGGTTGGGTAGGATATGGACTG 59.628 54.545 0.00 0.00 0.00 3.51
739 797 2.372172 GGTTGGGTAGGATATGGACTGG 59.628 54.545 0.00 0.00 0.00 4.00
740 798 3.314693 GTTGGGTAGGATATGGACTGGA 58.685 50.000 0.00 0.00 0.00 3.86
741 799 3.910627 GTTGGGTAGGATATGGACTGGAT 59.089 47.826 0.00 0.00 0.00 3.41
742 800 3.520696 TGGGTAGGATATGGACTGGATG 58.479 50.000 0.00 0.00 0.00 3.51
743 801 2.237392 GGGTAGGATATGGACTGGATGC 59.763 54.545 0.00 0.00 0.00 3.91
744 802 2.906389 GGTAGGATATGGACTGGATGCA 59.094 50.000 0.00 0.00 0.00 3.96
745 803 3.055530 GGTAGGATATGGACTGGATGCAG 60.056 52.174 13.34 13.34 28.84 4.41
746 804 1.350351 AGGATATGGACTGGATGCAGC 59.650 52.381 14.95 7.10 28.84 5.25
747 805 1.436600 GATATGGACTGGATGCAGCG 58.563 55.000 14.95 0.00 28.84 5.18
748 806 0.604780 ATATGGACTGGATGCAGCGC 60.605 55.000 14.95 0.00 28.84 5.92
749 807 2.665008 TATGGACTGGATGCAGCGCC 62.665 60.000 14.95 15.99 28.84 6.53
750 808 4.479993 GGACTGGATGCAGCGCCT 62.480 66.667 14.95 0.00 0.00 5.52
751 809 2.894387 GACTGGATGCAGCGCCTC 60.894 66.667 14.95 0.11 0.00 4.70
752 810 4.827087 ACTGGATGCAGCGCCTCG 62.827 66.667 14.95 0.00 0.00 4.63
753 811 4.827087 CTGGATGCAGCGCCTCGT 62.827 66.667 2.29 0.00 0.00 4.18
754 812 4.393155 TGGATGCAGCGCCTCGTT 62.393 61.111 2.29 0.00 0.00 3.85
755 813 3.869272 GGATGCAGCGCCTCGTTG 61.869 66.667 2.29 0.00 40.80 4.10
761 819 3.996124 AGCGCCTCGTTGCTGTCT 61.996 61.111 2.29 0.00 40.62 3.41
762 820 3.782244 GCGCCTCGTTGCTGTCTG 61.782 66.667 0.00 0.00 0.00 3.51
763 821 2.356313 CGCCTCGTTGCTGTCTGT 60.356 61.111 0.00 0.00 0.00 3.41
764 822 2.375766 CGCCTCGTTGCTGTCTGTC 61.376 63.158 0.00 0.00 0.00 3.51
765 823 1.300931 GCCTCGTTGCTGTCTGTCA 60.301 57.895 0.00 0.00 0.00 3.58
766 824 1.287730 GCCTCGTTGCTGTCTGTCAG 61.288 60.000 0.00 0.00 46.12 3.51
767 825 0.315251 CCTCGTTGCTGTCTGTCAGA 59.685 55.000 6.09 0.00 46.27 3.27
768 826 1.269778 CCTCGTTGCTGTCTGTCAGAA 60.270 52.381 3.51 0.00 46.27 3.02
769 827 2.473816 CTCGTTGCTGTCTGTCAGAAA 58.526 47.619 3.51 0.00 46.27 2.52
770 828 2.473816 TCGTTGCTGTCTGTCAGAAAG 58.526 47.619 14.91 14.91 46.27 2.62
771 829 2.100749 TCGTTGCTGTCTGTCAGAAAGA 59.899 45.455 22.27 6.22 46.27 2.52
772 830 2.866156 CGTTGCTGTCTGTCAGAAAGAA 59.134 45.455 22.27 10.44 46.27 2.52
773 831 3.309682 CGTTGCTGTCTGTCAGAAAGAAA 59.690 43.478 22.27 15.93 46.27 2.52
774 832 4.592179 GTTGCTGTCTGTCAGAAAGAAAC 58.408 43.478 23.00 23.00 40.08 2.78
775 833 2.866156 TGCTGTCTGTCAGAAAGAAACG 59.134 45.455 22.27 0.00 46.27 3.60
776 834 2.866762 GCTGTCTGTCAGAAAGAAACGT 59.133 45.455 22.27 0.00 46.27 3.99
777 835 4.049186 GCTGTCTGTCAGAAAGAAACGTA 58.951 43.478 22.27 0.00 46.27 3.57
778 836 4.686554 GCTGTCTGTCAGAAAGAAACGTAT 59.313 41.667 22.27 0.00 46.27 3.06
779 837 5.177696 GCTGTCTGTCAGAAAGAAACGTATT 59.822 40.000 22.27 0.00 46.27 1.89
780 838 6.525121 TGTCTGTCAGAAAGAAACGTATTG 57.475 37.500 3.51 0.00 0.00 1.90
781 839 5.465390 TGTCTGTCAGAAAGAAACGTATTGG 59.535 40.000 3.51 0.00 0.00 3.16
782 840 5.694910 GTCTGTCAGAAAGAAACGTATTGGA 59.305 40.000 3.51 0.00 0.00 3.53
783 841 5.694910 TCTGTCAGAAAGAAACGTATTGGAC 59.305 40.000 0.00 0.00 0.00 4.02
792 850 1.924335 CGTATTGGACGCGACATGG 59.076 57.895 15.93 0.00 46.27 3.66
793 851 1.641677 GTATTGGACGCGACATGGC 59.358 57.895 15.93 0.00 0.00 4.40
794 852 1.522806 TATTGGACGCGACATGGCC 60.523 57.895 15.93 0.00 0.00 5.36
795 853 2.245438 TATTGGACGCGACATGGCCA 62.245 55.000 15.93 8.56 0.00 5.36
802 860 4.838152 CGACATGGCCACGGGGAG 62.838 72.222 8.67 0.00 35.59 4.30
803 861 4.489771 GACATGGCCACGGGGAGG 62.490 72.222 8.67 0.00 35.59 4.30
811 869 2.282180 CACGGGGAGGGTGGTTTG 60.282 66.667 0.00 0.00 0.00 2.93
812 870 3.576259 ACGGGGAGGGTGGTTTGG 61.576 66.667 0.00 0.00 0.00 3.28
814 872 3.909651 GGGGAGGGTGGTTTGGCA 61.910 66.667 0.00 0.00 0.00 4.92
815 873 2.445155 GGGAGGGTGGTTTGGCAT 59.555 61.111 0.00 0.00 0.00 4.40
816 874 1.229177 GGGAGGGTGGTTTGGCATT 60.229 57.895 0.00 0.00 0.00 3.56
817 875 0.835971 GGGAGGGTGGTTTGGCATTT 60.836 55.000 0.00 0.00 0.00 2.32
818 876 0.608130 GGAGGGTGGTTTGGCATTTC 59.392 55.000 0.00 0.00 0.00 2.17
819 877 0.608130 GAGGGTGGTTTGGCATTTCC 59.392 55.000 0.00 0.00 0.00 3.13
820 878 0.190815 AGGGTGGTTTGGCATTTCCT 59.809 50.000 0.00 0.00 35.26 3.36
821 879 0.321346 GGGTGGTTTGGCATTTCCTG 59.679 55.000 0.00 0.00 35.26 3.86
822 880 0.321346 GGTGGTTTGGCATTTCCTGG 59.679 55.000 0.00 0.00 35.26 4.45
828 886 3.521796 GGCATTTCCTGGCGGCTC 61.522 66.667 11.43 0.00 41.02 4.70
829 887 3.521796 GCATTTCCTGGCGGCTCC 61.522 66.667 11.43 0.00 0.00 4.70
830 888 3.204827 CATTTCCTGGCGGCTCCG 61.205 66.667 11.43 3.56 43.09 4.63
831 889 4.489771 ATTTCCTGGCGGCTCCGG 62.490 66.667 11.43 8.36 41.11 5.14
836 894 4.697756 CTGGCGGCTCCGGTGAAA 62.698 66.667 11.43 0.00 40.19 2.69
837 895 4.257654 TGGCGGCTCCGGTGAAAA 62.258 61.111 11.43 0.00 40.19 2.29
838 896 2.981350 GGCGGCTCCGGTGAAAAA 60.981 61.111 7.92 0.00 40.19 1.94
839 897 2.340328 GGCGGCTCCGGTGAAAAAT 61.340 57.895 7.92 0.00 40.19 1.82
840 898 1.136774 GCGGCTCCGGTGAAAAATC 59.863 57.895 7.92 0.00 40.19 2.17
841 899 1.305930 GCGGCTCCGGTGAAAAATCT 61.306 55.000 7.92 0.00 40.19 2.40
842 900 2.010043 GCGGCTCCGGTGAAAAATCTA 61.010 52.381 7.92 0.00 40.19 1.98
843 901 1.933853 CGGCTCCGGTGAAAAATCTAG 59.066 52.381 7.92 0.00 35.56 2.43
844 902 2.418197 CGGCTCCGGTGAAAAATCTAGA 60.418 50.000 7.92 0.00 35.56 2.43
845 903 3.198872 GGCTCCGGTGAAAAATCTAGAG 58.801 50.000 7.92 0.00 0.00 2.43
846 904 3.369576 GGCTCCGGTGAAAAATCTAGAGT 60.370 47.826 7.92 0.00 0.00 3.24
847 905 3.619038 GCTCCGGTGAAAAATCTAGAGTG 59.381 47.826 7.92 0.00 0.00 3.51
848 906 4.184629 CTCCGGTGAAAAATCTAGAGTGG 58.815 47.826 0.00 0.00 0.00 4.00
849 907 3.835978 TCCGGTGAAAAATCTAGAGTGGA 59.164 43.478 0.00 0.00 0.00 4.02
850 908 4.081642 TCCGGTGAAAAATCTAGAGTGGAG 60.082 45.833 0.00 0.00 0.00 3.86
851 909 4.322801 CCGGTGAAAAATCTAGAGTGGAGT 60.323 45.833 0.00 0.00 0.00 3.85
852 910 4.627467 CGGTGAAAAATCTAGAGTGGAGTG 59.373 45.833 0.00 0.00 0.00 3.51
853 911 4.938226 GGTGAAAAATCTAGAGTGGAGTGG 59.062 45.833 0.00 0.00 0.00 4.00
854 912 5.280011 GGTGAAAAATCTAGAGTGGAGTGGA 60.280 44.000 0.00 0.00 0.00 4.02
855 913 6.410540 GTGAAAAATCTAGAGTGGAGTGGAT 58.589 40.000 0.00 0.00 0.00 3.41
856 914 7.364762 GGTGAAAAATCTAGAGTGGAGTGGATA 60.365 40.741 0.00 0.00 0.00 2.59
857 915 7.708752 GTGAAAAATCTAGAGTGGAGTGGATAG 59.291 40.741 0.00 0.00 0.00 2.08
858 916 6.739331 AAAATCTAGAGTGGAGTGGATAGG 57.261 41.667 0.00 0.00 0.00 2.57
859 917 5.671463 AATCTAGAGTGGAGTGGATAGGA 57.329 43.478 0.00 0.00 0.00 2.94
860 918 5.876691 ATCTAGAGTGGAGTGGATAGGAT 57.123 43.478 0.00 0.00 0.00 3.24
861 919 5.671463 TCTAGAGTGGAGTGGATAGGATT 57.329 43.478 0.00 0.00 0.00 3.01
862 920 5.389520 TCTAGAGTGGAGTGGATAGGATTG 58.610 45.833 0.00 0.00 0.00 2.67
863 921 3.312890 AGAGTGGAGTGGATAGGATTGG 58.687 50.000 0.00 0.00 0.00 3.16
864 922 3.051803 AGAGTGGAGTGGATAGGATTGGA 60.052 47.826 0.00 0.00 0.00 3.53
865 923 3.041946 AGTGGAGTGGATAGGATTGGAC 58.958 50.000 0.00 0.00 0.00 4.02
866 924 2.104963 GTGGAGTGGATAGGATTGGACC 59.895 54.545 0.00 0.00 0.00 4.46
867 925 2.293519 TGGAGTGGATAGGATTGGACCA 60.294 50.000 0.00 0.00 0.00 4.02
868 926 2.777692 GGAGTGGATAGGATTGGACCAA 59.222 50.000 9.92 9.92 32.32 3.67
869 927 3.395941 GGAGTGGATAGGATTGGACCAAT 59.604 47.826 19.92 19.92 36.72 3.16
870 928 4.505742 GGAGTGGATAGGATTGGACCAATC 60.506 50.000 31.38 31.38 46.52 2.67
879 937 3.827634 GGACCAATCCACATCCGC 58.172 61.111 0.00 0.00 45.47 5.54
880 938 2.180204 GGACCAATCCACATCCGCG 61.180 63.158 0.00 0.00 45.47 6.46
881 939 1.449601 GACCAATCCACATCCGCGT 60.450 57.895 4.92 0.00 0.00 6.01
882 940 1.429148 GACCAATCCACATCCGCGTC 61.429 60.000 4.92 0.00 0.00 5.19
883 941 1.449423 CCAATCCACATCCGCGTCA 60.449 57.895 4.92 0.00 0.00 4.35
884 942 1.705337 CCAATCCACATCCGCGTCAC 61.705 60.000 4.92 0.00 0.00 3.67
885 943 0.740868 CAATCCACATCCGCGTCACT 60.741 55.000 4.92 0.00 0.00 3.41
886 944 0.460284 AATCCACATCCGCGTCACTC 60.460 55.000 4.92 0.00 0.00 3.51
887 945 2.298158 ATCCACATCCGCGTCACTCC 62.298 60.000 4.92 0.00 0.00 3.85
888 946 2.509336 CACATCCGCGTCACTCCC 60.509 66.667 4.92 0.00 0.00 4.30
889 947 3.771160 ACATCCGCGTCACTCCCC 61.771 66.667 4.92 0.00 0.00 4.81
890 948 3.461773 CATCCGCGTCACTCCCCT 61.462 66.667 4.92 0.00 0.00 4.79
891 949 3.461773 ATCCGCGTCACTCCCCTG 61.462 66.667 4.92 0.00 0.00 4.45
895 953 4.008933 GCGTCACTCCCCTGCACT 62.009 66.667 0.00 0.00 0.00 4.40
896 954 2.047844 CGTCACTCCCCTGCACTG 60.048 66.667 0.00 0.00 0.00 3.66
897 955 2.359230 GTCACTCCCCTGCACTGC 60.359 66.667 0.00 0.00 0.00 4.40
898 956 2.848679 TCACTCCCCTGCACTGCA 60.849 61.111 3.11 3.11 36.92 4.41
899 957 2.226315 TCACTCCCCTGCACTGCAT 61.226 57.895 3.64 0.00 38.13 3.96
900 958 1.748122 CACTCCCCTGCACTGCATC 60.748 63.158 3.64 0.00 38.13 3.91
901 959 1.922369 ACTCCCCTGCACTGCATCT 60.922 57.895 3.64 0.00 38.13 2.90
902 960 1.451567 CTCCCCTGCACTGCATCTG 60.452 63.158 3.64 0.00 38.13 2.90
903 961 3.138798 CCCCTGCACTGCATCTGC 61.139 66.667 3.64 9.14 38.13 4.26
904 962 2.045242 CCCTGCACTGCATCTGCT 60.045 61.111 15.46 0.00 42.66 4.24
905 963 2.113433 CCCTGCACTGCATCTGCTC 61.113 63.158 15.46 0.00 42.66 4.26
906 964 1.078356 CCTGCACTGCATCTGCTCT 60.078 57.895 15.46 0.00 42.66 4.09
907 965 0.177373 CCTGCACTGCATCTGCTCTA 59.823 55.000 15.46 0.00 42.66 2.43
908 966 1.288350 CTGCACTGCATCTGCTCTAC 58.712 55.000 15.46 0.00 42.66 2.59
909 967 0.900421 TGCACTGCATCTGCTCTACT 59.100 50.000 15.46 0.00 42.66 2.57
910 968 1.134877 TGCACTGCATCTGCTCTACTC 60.135 52.381 15.46 0.00 42.66 2.59
911 969 1.805871 GCACTGCATCTGCTCTACTCC 60.806 57.143 8.86 0.00 42.66 3.85
912 970 1.755959 CACTGCATCTGCTCTACTCCT 59.244 52.381 3.53 0.00 42.66 3.69
913 971 2.954989 CACTGCATCTGCTCTACTCCTA 59.045 50.000 3.53 0.00 42.66 2.94
914 972 2.955660 ACTGCATCTGCTCTACTCCTAC 59.044 50.000 3.53 0.00 42.66 3.18
915 973 2.954989 CTGCATCTGCTCTACTCCTACA 59.045 50.000 3.53 0.00 42.66 2.74
916 974 3.365472 TGCATCTGCTCTACTCCTACAA 58.635 45.455 3.53 0.00 42.66 2.41
917 975 3.769300 TGCATCTGCTCTACTCCTACAAA 59.231 43.478 3.53 0.00 42.66 2.83
918 976 4.142071 TGCATCTGCTCTACTCCTACAAAG 60.142 45.833 3.53 0.00 42.66 2.77
919 977 4.098654 GCATCTGCTCTACTCCTACAAAGA 59.901 45.833 0.00 0.00 38.21 2.52
920 978 5.394663 GCATCTGCTCTACTCCTACAAAGAA 60.395 44.000 0.00 0.00 38.21 2.52
921 979 5.906113 TCTGCTCTACTCCTACAAAGAAG 57.094 43.478 0.00 0.00 0.00 2.85
922 980 5.326069 TCTGCTCTACTCCTACAAAGAAGT 58.674 41.667 0.00 0.00 0.00 3.01
923 981 5.184096 TCTGCTCTACTCCTACAAAGAAGTG 59.816 44.000 0.00 0.00 0.00 3.16
924 982 5.077564 TGCTCTACTCCTACAAAGAAGTGA 58.922 41.667 0.00 0.00 0.00 3.41
925 983 5.184096 TGCTCTACTCCTACAAAGAAGTGAG 59.816 44.000 0.00 0.00 0.00 3.51
926 984 5.646577 TCTACTCCTACAAAGAAGTGAGC 57.353 43.478 0.00 0.00 0.00 4.26
927 985 5.077564 TCTACTCCTACAAAGAAGTGAGCA 58.922 41.667 0.00 0.00 0.00 4.26
928 986 4.689612 ACTCCTACAAAGAAGTGAGCAA 57.310 40.909 0.00 0.00 0.00 3.91
929 987 4.636249 ACTCCTACAAAGAAGTGAGCAAG 58.364 43.478 0.00 0.00 0.00 4.01
930 988 4.345257 ACTCCTACAAAGAAGTGAGCAAGA 59.655 41.667 0.00 0.00 0.00 3.02
931 989 5.012561 ACTCCTACAAAGAAGTGAGCAAGAT 59.987 40.000 0.00 0.00 0.00 2.40
932 990 5.869579 TCCTACAAAGAAGTGAGCAAGATT 58.130 37.500 0.00 0.00 0.00 2.40
933 991 5.934625 TCCTACAAAGAAGTGAGCAAGATTC 59.065 40.000 0.00 0.00 0.00 2.52
934 992 5.702670 CCTACAAAGAAGTGAGCAAGATTCA 59.297 40.000 0.00 0.00 0.00 2.57
935 993 5.686159 ACAAAGAAGTGAGCAAGATTCAG 57.314 39.130 0.00 0.00 0.00 3.02
936 994 5.371526 ACAAAGAAGTGAGCAAGATTCAGA 58.628 37.500 0.00 0.00 0.00 3.27
937 995 5.469421 ACAAAGAAGTGAGCAAGATTCAGAG 59.531 40.000 0.00 0.00 0.00 3.35
938 996 5.480642 AAGAAGTGAGCAAGATTCAGAGA 57.519 39.130 0.00 0.00 0.00 3.10
939 997 5.480642 AGAAGTGAGCAAGATTCAGAGAA 57.519 39.130 0.00 0.00 0.00 2.87
940 998 6.052405 AGAAGTGAGCAAGATTCAGAGAAT 57.948 37.500 0.00 0.00 0.00 2.40
941 999 6.108015 AGAAGTGAGCAAGATTCAGAGAATC 58.892 40.000 10.88 10.88 0.00 2.52
942 1000 5.417754 AGTGAGCAAGATTCAGAGAATCA 57.582 39.130 18.70 0.00 37.82 2.57
943 1001 5.991861 AGTGAGCAAGATTCAGAGAATCAT 58.008 37.500 18.70 7.01 37.82 2.45
944 1002 6.050432 AGTGAGCAAGATTCAGAGAATCATC 58.950 40.000 18.70 12.16 37.82 2.92
945 1003 5.816258 GTGAGCAAGATTCAGAGAATCATCA 59.184 40.000 18.70 13.95 37.82 3.07
946 1004 6.018588 GTGAGCAAGATTCAGAGAATCATCAG 60.019 42.308 18.70 8.60 37.82 2.90
947 1005 4.817464 AGCAAGATTCAGAGAATCATCAGC 59.183 41.667 18.70 15.50 37.82 4.26
948 1006 4.023878 GCAAGATTCAGAGAATCATCAGCC 60.024 45.833 18.70 1.66 37.82 4.85
949 1007 4.354893 AGATTCAGAGAATCATCAGCCC 57.645 45.455 18.70 0.00 37.82 5.19
950 1008 3.715315 AGATTCAGAGAATCATCAGCCCA 59.285 43.478 18.70 0.00 37.82 5.36
951 1009 4.351407 AGATTCAGAGAATCATCAGCCCAT 59.649 41.667 18.70 0.00 37.82 4.00
952 1010 3.766068 TCAGAGAATCATCAGCCCATC 57.234 47.619 0.00 0.00 37.82 3.51
953 1011 2.371179 TCAGAGAATCATCAGCCCATCC 59.629 50.000 0.00 0.00 37.82 3.51
954 1012 2.105993 CAGAGAATCATCAGCCCATCCA 59.894 50.000 0.00 0.00 37.82 3.41
955 1013 2.781757 AGAGAATCATCAGCCCATCCAA 59.218 45.455 0.00 0.00 37.82 3.53
956 1014 3.398292 AGAGAATCATCAGCCCATCCAAT 59.602 43.478 0.00 0.00 37.82 3.16
957 1015 3.757493 GAGAATCATCAGCCCATCCAATC 59.243 47.826 0.00 0.00 33.17 2.67
958 1016 2.599408 ATCATCAGCCCATCCAATCC 57.401 50.000 0.00 0.00 0.00 3.01
959 1017 1.224436 TCATCAGCCCATCCAATCCA 58.776 50.000 0.00 0.00 0.00 3.41
960 1018 1.570024 TCATCAGCCCATCCAATCCAA 59.430 47.619 0.00 0.00 0.00 3.53
961 1019 2.178325 TCATCAGCCCATCCAATCCAAT 59.822 45.455 0.00 0.00 0.00 3.16
962 1020 2.369983 TCAGCCCATCCAATCCAATC 57.630 50.000 0.00 0.00 0.00 2.67
963 1021 1.133388 TCAGCCCATCCAATCCAATCC 60.133 52.381 0.00 0.00 0.00 3.01
964 1022 0.935942 AGCCCATCCAATCCAATCCA 59.064 50.000 0.00 0.00 0.00 3.41
965 1023 1.506418 AGCCCATCCAATCCAATCCAT 59.494 47.619 0.00 0.00 0.00 3.41
966 1024 1.897802 GCCCATCCAATCCAATCCATC 59.102 52.381 0.00 0.00 0.00 3.51
967 1025 2.492196 GCCCATCCAATCCAATCCATCT 60.492 50.000 0.00 0.00 0.00 2.90
968 1026 3.853207 CCCATCCAATCCAATCCATCTT 58.147 45.455 0.00 0.00 0.00 2.40
969 1027 3.830755 CCCATCCAATCCAATCCATCTTC 59.169 47.826 0.00 0.00 0.00 2.87
970 1028 4.448787 CCCATCCAATCCAATCCATCTTCT 60.449 45.833 0.00 0.00 0.00 2.85
971 1029 4.765856 CCATCCAATCCAATCCATCTTCTC 59.234 45.833 0.00 0.00 0.00 2.87
972 1030 5.457778 CCATCCAATCCAATCCATCTTCTCT 60.458 44.000 0.00 0.00 0.00 3.10
973 1031 5.722172 TCCAATCCAATCCATCTTCTCTT 57.278 39.130 0.00 0.00 0.00 2.85
974 1032 5.688807 TCCAATCCAATCCATCTTCTCTTC 58.311 41.667 0.00 0.00 0.00 2.87
975 1033 5.431073 TCCAATCCAATCCATCTTCTCTTCT 59.569 40.000 0.00 0.00 0.00 2.85
976 1034 5.764192 CCAATCCAATCCATCTTCTCTTCTC 59.236 44.000 0.00 0.00 0.00 2.87
977 1035 6.409464 CCAATCCAATCCATCTTCTCTTCTCT 60.409 42.308 0.00 0.00 0.00 3.10
978 1036 6.828307 ATCCAATCCATCTTCTCTTCTCTT 57.172 37.500 0.00 0.00 0.00 2.85
979 1037 6.232581 TCCAATCCATCTTCTCTTCTCTTC 57.767 41.667 0.00 0.00 0.00 2.87
980 1038 5.963253 TCCAATCCATCTTCTCTTCTCTTCT 59.037 40.000 0.00 0.00 0.00 2.85
981 1039 6.098124 TCCAATCCATCTTCTCTTCTCTTCTC 59.902 42.308 0.00 0.00 0.00 2.87
982 1040 6.282930 CAATCCATCTTCTCTTCTCTTCTCC 58.717 44.000 0.00 0.00 0.00 3.71
983 1041 5.205517 TCCATCTTCTCTTCTCTTCTCCT 57.794 43.478 0.00 0.00 0.00 3.69
984 1042 5.200483 TCCATCTTCTCTTCTCTTCTCCTC 58.800 45.833 0.00 0.00 0.00 3.71
985 1043 5.044179 TCCATCTTCTCTTCTCTTCTCCTCT 60.044 44.000 0.00 0.00 0.00 3.69
986 1044 5.658190 CCATCTTCTCTTCTCTTCTCCTCTT 59.342 44.000 0.00 0.00 0.00 2.85
987 1045 6.406177 CCATCTTCTCTTCTCTTCTCCTCTTG 60.406 46.154 0.00 0.00 0.00 3.02
988 1046 5.640147 TCTTCTCTTCTCTTCTCCTCTTGT 58.360 41.667 0.00 0.00 0.00 3.16
989 1047 6.074648 TCTTCTCTTCTCTTCTCCTCTTGTT 58.925 40.000 0.00 0.00 0.00 2.83
990 1048 5.720371 TCTCTTCTCTTCTCCTCTTGTTG 57.280 43.478 0.00 0.00 0.00 3.33
991 1049 4.021544 TCTCTTCTCTTCTCCTCTTGTTGC 60.022 45.833 0.00 0.00 0.00 4.17
992 1050 3.900601 TCTTCTCTTCTCCTCTTGTTGCT 59.099 43.478 0.00 0.00 0.00 3.91
993 1051 3.674528 TCTCTTCTCCTCTTGTTGCTG 57.325 47.619 0.00 0.00 0.00 4.41
1009 1067 1.208776 TGCTGCAGTAGATGAGCATGT 59.791 47.619 16.64 0.00 37.24 3.21
1287 1379 3.628646 CTTTCCCCCAGTCCCGCAG 62.629 68.421 0.00 0.00 0.00 5.18
1312 1404 1.774639 GCAAATAATGCGCCATCCTG 58.225 50.000 4.18 0.00 46.87 3.86
1313 1405 1.337703 GCAAATAATGCGCCATCCTGA 59.662 47.619 4.18 0.00 46.87 3.86
1317 1409 1.631071 TAATGCGCCATCCTGACCCA 61.631 55.000 4.18 0.00 0.00 4.51
1318 1410 2.288642 AATGCGCCATCCTGACCCAT 62.289 55.000 4.18 0.00 0.00 4.00
1320 1412 2.280389 CGCCATCCTGACCCATCG 60.280 66.667 0.00 0.00 0.00 3.84
1341 1441 1.760875 CCGCTCCCTGGGCTAACTA 60.761 63.158 8.22 0.00 0.00 2.24
1342 1442 1.335132 CCGCTCCCTGGGCTAACTAA 61.335 60.000 8.22 0.00 0.00 2.24
1390 1490 4.410400 GAGGACAAGGTGGGGCGG 62.410 72.222 0.00 0.00 0.00 6.13
1671 1771 3.775654 GTCCTCTGGGCTGTCCGG 61.776 72.222 0.00 0.00 43.43 5.14
1687 1787 1.136305 TCCGGTGTCGAAGATGAATCC 59.864 52.381 0.00 0.00 40.67 3.01
1711 1811 0.185901 CAGAGGAGGAGGAGGAGGAG 59.814 65.000 0.00 0.00 0.00 3.69
1784 1890 1.956170 GTGACCACTGCACTGACCG 60.956 63.158 0.00 0.00 33.57 4.79
1787 1893 2.357517 CCACTGCACTGACCGACC 60.358 66.667 0.00 0.00 0.00 4.79
1791 1897 3.231889 CTGCACTGACCGACCAGCT 62.232 63.158 4.30 0.00 37.68 4.24
1792 1898 2.740055 GCACTGACCGACCAGCTG 60.740 66.667 6.78 6.78 37.68 4.24
1796 1905 1.226802 CTGACCGACCAGCTGATCG 60.227 63.158 24.14 24.14 38.08 3.69
1844 1953 6.589907 GGGAATAAAATGCCACTTGTTTACAG 59.410 38.462 0.00 0.00 0.00 2.74
1863 1972 3.375782 AGCTGTTTTGGCTGACAATTC 57.624 42.857 0.00 0.00 39.21 2.17
1881 1990 8.801299 TGACAATTCTGCACCTTTTTATTCATA 58.199 29.630 0.00 0.00 0.00 2.15
1914 2023 6.371548 TGATCTTGTAGTGCAGGAATTTACAC 59.628 38.462 0.00 0.00 36.76 2.90
1918 2027 7.386848 TCTTGTAGTGCAGGAATTTACACTTAC 59.613 37.037 0.00 0.00 42.97 2.34
1965 2079 8.867935 CATATACTATGCTGCTGTGTTAAGATC 58.132 37.037 0.00 0.00 0.00 2.75
1966 2080 5.350504 ACTATGCTGCTGTGTTAAGATCT 57.649 39.130 0.00 0.00 0.00 2.75
1967 2081 6.471233 ACTATGCTGCTGTGTTAAGATCTA 57.529 37.500 0.00 0.00 0.00 1.98
1968 2082 6.276847 ACTATGCTGCTGTGTTAAGATCTAC 58.723 40.000 0.00 0.00 0.00 2.59
1996 2110 2.288948 TGATTGAACAATTGGTGCCAGC 60.289 45.455 10.83 0.00 0.00 4.85
2213 2334 4.151157 GCATTTGCTCCATGAAAACTGTTC 59.849 41.667 0.00 0.00 38.21 3.18
2266 2398 8.234136 TCTGAACTAGACTGAACTCAAGTTAA 57.766 34.615 0.00 0.00 38.56 2.01
2405 2566 1.003355 CCATGTCGACAAGGCCACT 60.003 57.895 25.31 3.14 0.00 4.00
2431 2598 4.003788 CAAGGAGCACCCCGTCGT 62.004 66.667 0.00 0.00 36.73 4.34
2443 2610 4.477975 CGTCGTCGGCTGACCTCC 62.478 72.222 19.98 6.93 42.37 4.30
2444 2611 3.063084 GTCGTCGGCTGACCTCCT 61.063 66.667 19.98 0.00 42.37 3.69
2445 2612 2.750637 TCGTCGGCTGACCTCCTC 60.751 66.667 19.98 0.00 42.37 3.71
2446 2613 4.180946 CGTCGGCTGACCTCCTCG 62.181 72.222 19.98 3.23 42.37 4.63
2447 2614 3.063084 GTCGGCTGACCTCCTCGT 61.063 66.667 15.20 0.00 39.30 4.18
2448 2615 2.750637 TCGGCTGACCTCCTCGTC 60.751 66.667 0.00 0.00 0.00 4.20
2449 2616 4.180946 CGGCTGACCTCCTCGTCG 62.181 72.222 0.00 0.00 35.40 5.12
2450 2617 3.063084 GGCTGACCTCCTCGTCGT 61.063 66.667 0.00 0.00 35.40 4.34
2451 2618 2.486042 GCTGACCTCCTCGTCGTC 59.514 66.667 0.00 0.00 35.40 4.20
2452 2619 2.041686 GCTGACCTCCTCGTCGTCT 61.042 63.158 0.00 0.00 35.40 4.18
2453 2620 1.984321 GCTGACCTCCTCGTCGTCTC 61.984 65.000 0.00 0.00 35.40 3.36
2454 2621 1.370587 CTGACCTCCTCGTCGTCTCC 61.371 65.000 0.00 0.00 35.40 3.71
2455 2622 1.078285 GACCTCCTCGTCGTCTCCT 60.078 63.158 0.00 0.00 0.00 3.69
2456 2623 1.078285 ACCTCCTCGTCGTCTCCTC 60.078 63.158 0.00 0.00 0.00 3.71
2457 2624 1.222387 CCTCCTCGTCGTCTCCTCT 59.778 63.158 0.00 0.00 0.00 3.69
2488 2677 3.119316 CCAAGTCACTCACTAGCTGTAGG 60.119 52.174 0.00 0.00 32.30 3.18
2500 2689 3.703001 AGCTGTAGGTGCATTAGTTGT 57.297 42.857 0.00 0.00 0.00 3.32
2564 2764 1.401552 GCAAGTGTCAACAACTGCTGA 59.598 47.619 0.00 0.00 34.62 4.26
2573 2773 4.678287 GTCAACAACTGCTGATGTTTCATG 59.322 41.667 15.06 6.75 37.13 3.07
2581 2784 5.093849 TGCTGATGTTTCATGAGATCAGA 57.906 39.130 28.53 18.08 42.99 3.27
2582 2785 4.874396 TGCTGATGTTTCATGAGATCAGAC 59.126 41.667 28.53 22.55 42.99 3.51
2675 2908 9.797556 GTTGGTAAGTTGTTTAAGAAGTGATTT 57.202 29.630 0.00 0.00 0.00 2.17
2828 3150 1.532437 CACACACACACTGCATACTGG 59.468 52.381 0.00 0.00 0.00 4.00
2856 3178 2.036992 CCATTAGCCTGCCTACTCAGAG 59.963 54.545 0.00 0.00 36.19 3.35
2864 3186 3.367910 CCTGCCTACTCAGAGTCTGAAAC 60.368 52.174 22.83 11.30 40.18 2.78
2873 3195 1.000283 AGAGTCTGAAACTGCGGTGAG 60.000 52.381 0.00 0.00 38.74 3.51
2900 3222 1.755783 GCCCCTCTGCCATTGGAAG 60.756 63.158 6.95 5.42 0.00 3.46
2948 3288 0.608035 GCTTGGTTGATCCCGTGGAA 60.608 55.000 0.00 0.00 34.34 3.53
2949 3289 1.165270 CTTGGTTGATCCCGTGGAAC 58.835 55.000 0.00 0.00 34.34 3.62
2950 3290 0.768622 TTGGTTGATCCCGTGGAACT 59.231 50.000 0.00 0.00 34.34 3.01
2951 3291 0.036164 TGGTTGATCCCGTGGAACTG 59.964 55.000 0.00 0.00 34.34 3.16
2952 3292 0.676782 GGTTGATCCCGTGGAACTGG 60.677 60.000 0.00 0.00 43.35 4.00
2957 3297 3.668386 CCCGTGGAACTGGAAAGC 58.332 61.111 0.00 0.00 45.00 3.51
2958 3298 1.228124 CCCGTGGAACTGGAAAGCA 60.228 57.895 0.00 0.00 45.00 3.91
2959 3299 0.609131 CCCGTGGAACTGGAAAGCAT 60.609 55.000 0.00 0.00 45.00 3.79
2960 3300 0.804989 CCGTGGAACTGGAAAGCATC 59.195 55.000 0.00 0.00 33.32 3.91
3047 3394 3.635373 CACCAGCAAGAATTAGCCATGAT 59.365 43.478 0.00 0.00 0.00 2.45
3052 3399 6.127980 CCAGCAAGAATTAGCCATGATATCAG 60.128 42.308 11.78 0.00 0.00 2.90
3053 3400 6.653740 CAGCAAGAATTAGCCATGATATCAGA 59.346 38.462 11.78 0.00 0.00 3.27
3057 3404 9.841880 CAAGAATTAGCCATGATATCAGAAATG 57.158 33.333 11.78 4.40 0.00 2.32
3093 3463 5.559035 GCGCACAATAGTATGAACCTTGATC 60.559 44.000 0.30 0.00 0.00 2.92
3111 3482 3.936453 TGATCGGGGTTTTCTGAAATACG 59.064 43.478 3.31 6.77 0.00 3.06
3113 3484 1.807742 CGGGGTTTTCTGAAATACGCA 59.192 47.619 21.51 2.55 0.00 5.24
3114 3485 2.413634 CGGGGTTTTCTGAAATACGCAC 60.414 50.000 21.51 11.51 0.00 5.34
3115 3486 2.554893 GGGGTTTTCTGAAATACGCACA 59.445 45.455 21.51 1.45 0.00 4.57
3118 3490 4.219033 GGTTTTCTGAAATACGCACAGTG 58.781 43.478 3.31 0.00 33.93 3.66
3122 3494 2.480037 TCTGAAATACGCACAGTGCAAG 59.520 45.455 25.19 12.29 45.36 4.01
3135 3507 3.756727 GCAAGGCAAGGCAGGAGC 61.757 66.667 0.00 0.00 41.10 4.70
3136 3508 3.437795 CAAGGCAAGGCAGGAGCG 61.438 66.667 0.00 0.00 43.41 5.03
3137 3509 3.958860 AAGGCAAGGCAGGAGCGT 61.959 61.111 0.00 0.00 43.41 5.07
3141 3513 2.749044 CAAGGCAGGAGCGTGCAT 60.749 61.111 15.82 6.98 45.93 3.96
3143 3515 3.258228 AAGGCAGGAGCGTGCATGA 62.258 57.895 10.93 0.00 45.93 3.07
3144 3516 2.747460 GGCAGGAGCGTGCATGAA 60.747 61.111 10.93 0.00 45.93 2.57
3145 3517 2.117156 GGCAGGAGCGTGCATGAAT 61.117 57.895 10.93 0.00 45.93 2.57
3169 3547 0.249868 TGATGGATTGGACGGCGATC 60.250 55.000 16.62 5.73 0.00 3.69
3226 3604 2.031516 CACTCTTCCTGCAGGCACG 61.032 63.158 28.91 17.49 34.44 5.34
3274 3662 6.923199 ATGAAGGGAAATGAACAAACTGAT 57.077 33.333 0.00 0.00 0.00 2.90
3295 3714 7.774157 ACTGATTTGATCTGATGCAAGAACTAT 59.226 33.333 0.00 0.00 33.12 2.12
3296 3715 9.269453 CTGATTTGATCTGATGCAAGAACTATA 57.731 33.333 0.00 0.00 0.00 1.31
3304 3723 5.260424 TGATGCAAGAACTATAAAAGGCCA 58.740 37.500 5.01 0.00 0.00 5.36
3368 3800 8.834004 TGATCCATCATCATAGATCATAGACA 57.166 34.615 0.00 0.00 40.03 3.41
3424 3856 0.773644 AGCAAGCAAGAAAGGGAGGA 59.226 50.000 0.00 0.00 0.00 3.71
3428 3860 0.701147 AGCAAGAAAGGGAGGAAGGG 59.299 55.000 0.00 0.00 0.00 3.95
3429 3861 0.405973 GCAAGAAAGGGAGGAAGGGT 59.594 55.000 0.00 0.00 0.00 4.34
3430 3862 1.888391 GCAAGAAAGGGAGGAAGGGTG 60.888 57.143 0.00 0.00 0.00 4.61
3431 3863 1.076438 AAGAAAGGGAGGAAGGGTGG 58.924 55.000 0.00 0.00 0.00 4.61
3432 3864 0.103876 AGAAAGGGAGGAAGGGTGGT 60.104 55.000 0.00 0.00 0.00 4.16
3433 3865 1.153565 AGAAAGGGAGGAAGGGTGGTA 59.846 52.381 0.00 0.00 0.00 3.25
3434 3866 1.281287 GAAAGGGAGGAAGGGTGGTAC 59.719 57.143 0.00 0.00 0.00 3.34
3435 3867 0.908180 AAGGGAGGAAGGGTGGTACG 60.908 60.000 0.00 0.00 0.00 3.67
3436 3868 2.582978 GGAGGAAGGGTGGTACGC 59.417 66.667 0.00 0.00 38.67 4.42
3437 3869 1.988406 GGAGGAAGGGTGGTACGCT 60.988 63.158 0.00 0.00 43.70 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.652994 AACTGAGATGTGTAGACTTCCTC 57.347 43.478 2.66 2.20 0.00 3.71
27 28 2.494471 TCTTCCGCGTATCTCCAAAGAA 59.506 45.455 4.92 0.00 34.49 2.52
102 103 2.034053 GCCACAAAACCGAAGTTCATCA 59.966 45.455 3.32 0.00 34.19 3.07
105 106 1.133407 GTGCCACAAAACCGAAGTTCA 59.867 47.619 3.32 0.00 34.19 3.18
109 110 0.457851 TTGGTGCCACAAAACCGAAG 59.542 50.000 0.00 0.00 39.47 3.79
118 119 4.980573 AGTAGAATAAAGTTGGTGCCACA 58.019 39.130 0.00 0.00 0.00 4.17
123 124 8.443937 GTTGAGCTAAGTAGAATAAAGTTGGTG 58.556 37.037 0.00 0.00 0.00 4.17
124 125 8.376270 AGTTGAGCTAAGTAGAATAAAGTTGGT 58.624 33.333 0.00 0.00 0.00 3.67
141 195 8.123639 ACTTGAGAGTAACATAAGTTGAGCTA 57.876 34.615 0.00 0.00 38.69 3.32
143 197 7.659652 AACTTGAGAGTAACATAAGTTGAGC 57.340 36.000 0.00 0.00 39.37 4.26
149 203 8.443937 GGCACTTTAACTTGAGAGTAACATAAG 58.556 37.037 0.00 0.00 34.21 1.73
151 205 6.877322 GGGCACTTTAACTTGAGAGTAACATA 59.123 38.462 0.00 0.00 34.21 2.29
154 208 5.061179 TGGGCACTTTAACTTGAGAGTAAC 58.939 41.667 0.00 0.00 34.21 2.50
155 209 5.298989 TGGGCACTTTAACTTGAGAGTAA 57.701 39.130 0.00 0.00 34.21 2.24
158 212 4.821805 TCTTTGGGCACTTTAACTTGAGAG 59.178 41.667 0.00 0.00 0.00 3.20
165 219 5.763698 AGTAGTCTTCTTTGGGCACTTTAAC 59.236 40.000 0.00 0.00 0.00 2.01
194 248 5.453567 CCTTTGGGGAAAGACTTTACTTG 57.546 43.478 10.02 0.00 37.23 3.16
215 269 3.418684 ACAATAGTGACAAGGACACCC 57.581 47.619 0.00 0.00 38.82 4.61
219 273 6.567891 GCAGGTAAAACAATAGTGACAAGGAC 60.568 42.308 0.00 0.00 0.00 3.85
224 278 6.170506 CCTAGCAGGTAAAACAATAGTGACA 58.829 40.000 0.00 0.00 0.00 3.58
229 283 8.621286 CATAAACCCTAGCAGGTAAAACAATAG 58.379 37.037 2.18 0.00 40.05 1.73
232 286 6.207810 CACATAAACCCTAGCAGGTAAAACAA 59.792 38.462 2.18 0.00 40.05 2.83
240 294 3.480470 CCATCACATAAACCCTAGCAGG 58.520 50.000 0.00 0.00 34.30 4.85
241 295 3.136443 TCCCATCACATAAACCCTAGCAG 59.864 47.826 0.00 0.00 0.00 4.24
244 298 5.630415 TCTTCCCATCACATAAACCCTAG 57.370 43.478 0.00 0.00 0.00 3.02
284 338 8.862325 TCATTACTGTTGAAACTATTGGTCAT 57.138 30.769 0.00 0.00 0.00 3.06
289 343 8.230486 GTCACCTCATTACTGTTGAAACTATTG 58.770 37.037 0.00 0.00 0.00 1.90
291 345 7.680730 AGTCACCTCATTACTGTTGAAACTAT 58.319 34.615 0.00 0.00 0.00 2.12
295 349 6.042093 AGAGAGTCACCTCATTACTGTTGAAA 59.958 38.462 0.00 0.00 40.40 2.69
314 368 7.850935 ATAGCAGTAGAGTAGTAGAGAGAGT 57.149 40.000 0.00 0.00 0.00 3.24
315 369 8.585881 AGAATAGCAGTAGAGTAGTAGAGAGAG 58.414 40.741 0.00 0.00 0.00 3.20
382 436 9.922305 CTATGTTGCTTTACTTTTATGCTCTAC 57.078 33.333 0.00 0.00 0.00 2.59
429 484 0.392336 GCCATGGGTTCAAACTTGCA 59.608 50.000 15.13 0.00 0.00 4.08
462 517 4.525912 ACCACTTCATCCATTTTCTTGC 57.474 40.909 0.00 0.00 0.00 4.01
479 534 3.572255 TCCATTAGTTCAAGGCAAACCAC 59.428 43.478 0.00 0.00 39.06 4.16
511 566 3.435169 GGAGGTGAAGACCAGGAGTTTTT 60.435 47.826 0.00 0.00 45.98 1.94
635 693 6.371595 TCAATTTCCCTTATGTTGGCAAAT 57.628 33.333 0.00 0.77 0.00 2.32
673 731 7.173218 TCGAGTCTAGCAATTGATTCTTTTTGT 59.827 33.333 10.34 0.00 0.00 2.83
680 738 4.352039 TCGTCGAGTCTAGCAATTGATTC 58.648 43.478 10.34 0.00 0.00 2.52
690 748 3.303461 CCAAGTAGCATCGTCGAGTCTAG 60.303 52.174 0.00 0.00 0.00 2.43
691 749 2.612672 CCAAGTAGCATCGTCGAGTCTA 59.387 50.000 0.00 1.76 0.00 2.59
692 750 1.402259 CCAAGTAGCATCGTCGAGTCT 59.598 52.381 0.00 2.76 0.00 3.24
693 751 1.534175 CCCAAGTAGCATCGTCGAGTC 60.534 57.143 0.00 0.00 0.00 3.36
694 752 0.456221 CCCAAGTAGCATCGTCGAGT 59.544 55.000 0.00 0.00 0.00 4.18
695 753 0.249073 CCCCAAGTAGCATCGTCGAG 60.249 60.000 0.00 0.00 0.00 4.04
696 754 0.968901 ACCCCAAGTAGCATCGTCGA 60.969 55.000 0.00 0.00 0.00 4.20
697 755 0.108329 AACCCCAAGTAGCATCGTCG 60.108 55.000 0.00 0.00 0.00 5.12
698 756 1.369625 CAACCCCAAGTAGCATCGTC 58.630 55.000 0.00 0.00 0.00 4.20
699 757 0.035439 CCAACCCCAAGTAGCATCGT 60.035 55.000 0.00 0.00 0.00 3.73
700 758 0.748005 CCCAACCCCAAGTAGCATCG 60.748 60.000 0.00 0.00 0.00 3.84
701 759 0.331616 ACCCAACCCCAAGTAGCATC 59.668 55.000 0.00 0.00 0.00 3.91
702 760 0.783850 AACCCAACCCCAAGTAGCAT 59.216 50.000 0.00 0.00 0.00 3.79
703 761 0.178975 CAACCCAACCCCAAGTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
704 762 0.898326 CCAACCCAACCCCAAGTAGC 60.898 60.000 0.00 0.00 0.00 3.58
705 763 0.251608 CCCAACCCAACCCCAAGTAG 60.252 60.000 0.00 0.00 0.00 2.57
706 764 1.000041 ACCCAACCCAACCCCAAGTA 61.000 55.000 0.00 0.00 0.00 2.24
707 765 1.000041 TACCCAACCCAACCCCAAGT 61.000 55.000 0.00 0.00 0.00 3.16
708 766 0.251608 CTACCCAACCCAACCCCAAG 60.252 60.000 0.00 0.00 0.00 3.61
709 767 1.731324 CCTACCCAACCCAACCCCAA 61.731 60.000 0.00 0.00 0.00 4.12
710 768 2.164279 CCTACCCAACCCAACCCCA 61.164 63.158 0.00 0.00 0.00 4.96
711 769 1.219131 ATCCTACCCAACCCAACCCC 61.219 60.000 0.00 0.00 0.00 4.95
712 770 1.598869 TATCCTACCCAACCCAACCC 58.401 55.000 0.00 0.00 0.00 4.11
713 771 2.158519 CCATATCCTACCCAACCCAACC 60.159 54.545 0.00 0.00 0.00 3.77
714 772 2.781174 TCCATATCCTACCCAACCCAAC 59.219 50.000 0.00 0.00 0.00 3.77
715 773 2.781174 GTCCATATCCTACCCAACCCAA 59.219 50.000 0.00 0.00 0.00 4.12
716 774 2.021441 AGTCCATATCCTACCCAACCCA 60.021 50.000 0.00 0.00 0.00 4.51
717 775 2.372172 CAGTCCATATCCTACCCAACCC 59.628 54.545 0.00 0.00 0.00 4.11
718 776 2.372172 CCAGTCCATATCCTACCCAACC 59.628 54.545 0.00 0.00 0.00 3.77
719 777 3.314693 TCCAGTCCATATCCTACCCAAC 58.685 50.000 0.00 0.00 0.00 3.77
720 778 3.717507 TCCAGTCCATATCCTACCCAA 57.282 47.619 0.00 0.00 0.00 4.12
721 779 3.520696 CATCCAGTCCATATCCTACCCA 58.479 50.000 0.00 0.00 0.00 4.51
722 780 2.237392 GCATCCAGTCCATATCCTACCC 59.763 54.545 0.00 0.00 0.00 3.69
723 781 2.906389 TGCATCCAGTCCATATCCTACC 59.094 50.000 0.00 0.00 0.00 3.18
724 782 3.618507 GCTGCATCCAGTCCATATCCTAC 60.619 52.174 0.00 0.00 41.26 3.18
725 783 2.568956 GCTGCATCCAGTCCATATCCTA 59.431 50.000 0.00 0.00 41.26 2.94
726 784 1.350351 GCTGCATCCAGTCCATATCCT 59.650 52.381 0.00 0.00 41.26 3.24
727 785 1.818642 GCTGCATCCAGTCCATATCC 58.181 55.000 0.00 0.00 41.26 2.59
728 786 1.436600 CGCTGCATCCAGTCCATATC 58.563 55.000 0.00 0.00 41.26 1.63
729 787 0.604780 GCGCTGCATCCAGTCCATAT 60.605 55.000 0.00 0.00 41.26 1.78
730 788 1.227645 GCGCTGCATCCAGTCCATA 60.228 57.895 0.00 0.00 41.26 2.74
731 789 2.515523 GCGCTGCATCCAGTCCAT 60.516 61.111 0.00 0.00 41.26 3.41
732 790 4.783621 GGCGCTGCATCCAGTCCA 62.784 66.667 7.64 0.00 41.26 4.02
733 791 4.479993 AGGCGCTGCATCCAGTCC 62.480 66.667 7.64 0.00 41.26 3.85
734 792 2.894387 GAGGCGCTGCATCCAGTC 60.894 66.667 7.64 0.00 41.26 3.51
735 793 4.827087 CGAGGCGCTGCATCCAGT 62.827 66.667 7.64 0.00 41.26 4.00
736 794 4.827087 ACGAGGCGCTGCATCCAG 62.827 66.667 7.64 6.37 35.86 3.86
737 795 4.393155 AACGAGGCGCTGCATCCA 62.393 61.111 7.64 0.00 35.86 3.41
738 796 3.869272 CAACGAGGCGCTGCATCC 61.869 66.667 7.64 0.00 35.86 3.51
739 797 4.527157 GCAACGAGGCGCTGCATC 62.527 66.667 13.08 5.35 46.26 3.91
744 802 3.996124 AGACAGCAACGAGGCGCT 61.996 61.111 7.64 0.00 39.66 5.92
745 803 3.782244 CAGACAGCAACGAGGCGC 61.782 66.667 0.00 0.00 39.27 6.53
746 804 2.356313 ACAGACAGCAACGAGGCG 60.356 61.111 0.00 0.00 39.27 5.52
747 805 1.287730 CTGACAGACAGCAACGAGGC 61.288 60.000 0.00 0.00 39.86 4.70
748 806 0.315251 TCTGACAGACAGCAACGAGG 59.685 55.000 0.00 0.00 45.38 4.63
749 807 2.140065 TTCTGACAGACAGCAACGAG 57.860 50.000 4.15 0.00 45.38 4.18
750 808 2.100749 TCTTTCTGACAGACAGCAACGA 59.899 45.455 12.90 0.00 45.38 3.85
751 809 2.473816 TCTTTCTGACAGACAGCAACG 58.526 47.619 12.90 0.00 45.38 4.10
752 810 4.592179 GTTTCTTTCTGACAGACAGCAAC 58.408 43.478 15.25 15.25 45.38 4.17
753 811 3.309682 CGTTTCTTTCTGACAGACAGCAA 59.690 43.478 12.90 6.67 45.38 3.91
754 812 2.866156 CGTTTCTTTCTGACAGACAGCA 59.134 45.455 12.90 0.46 45.38 4.41
755 813 2.866762 ACGTTTCTTTCTGACAGACAGC 59.133 45.455 12.90 0.29 45.38 4.40
756 814 6.346919 CCAATACGTTTCTTTCTGACAGACAG 60.347 42.308 11.71 11.71 46.97 3.51
757 815 5.465390 CCAATACGTTTCTTTCTGACAGACA 59.535 40.000 4.15 0.00 0.00 3.41
758 816 5.694910 TCCAATACGTTTCTTTCTGACAGAC 59.305 40.000 4.15 0.00 0.00 3.51
759 817 5.694910 GTCCAATACGTTTCTTTCTGACAGA 59.305 40.000 0.00 0.00 0.00 3.41
760 818 5.388475 CGTCCAATACGTTTCTTTCTGACAG 60.388 44.000 0.00 0.00 46.72 3.51
761 819 4.446385 CGTCCAATACGTTTCTTTCTGACA 59.554 41.667 0.00 0.00 46.72 3.58
762 820 4.942765 CGTCCAATACGTTTCTTTCTGAC 58.057 43.478 0.00 0.00 46.72 3.51
775 833 1.641677 GCCATGTCGCGTCCAATAC 59.358 57.895 5.77 0.00 0.00 1.89
776 834 1.522806 GGCCATGTCGCGTCCAATA 60.523 57.895 5.77 0.00 0.00 1.90
777 835 2.824041 GGCCATGTCGCGTCCAAT 60.824 61.111 5.77 0.00 0.00 3.16
778 836 4.321966 TGGCCATGTCGCGTCCAA 62.322 61.111 0.00 0.00 0.00 3.53
785 843 4.838152 CTCCCCGTGGCCATGTCG 62.838 72.222 23.39 15.39 0.00 4.35
786 844 4.489771 CCTCCCCGTGGCCATGTC 62.490 72.222 23.39 2.67 0.00 3.06
794 852 2.282180 CAAACCACCCTCCCCGTG 60.282 66.667 0.00 0.00 0.00 4.94
795 853 3.576259 CCAAACCACCCTCCCCGT 61.576 66.667 0.00 0.00 0.00 5.28
797 855 2.746947 AATGCCAAACCACCCTCCCC 62.747 60.000 0.00 0.00 0.00 4.81
798 856 0.835971 AAATGCCAAACCACCCTCCC 60.836 55.000 0.00 0.00 0.00 4.30
799 857 0.608130 GAAATGCCAAACCACCCTCC 59.392 55.000 0.00 0.00 0.00 4.30
800 858 0.608130 GGAAATGCCAAACCACCCTC 59.392 55.000 0.00 0.00 36.34 4.30
801 859 0.190815 AGGAAATGCCAAACCACCCT 59.809 50.000 0.00 0.00 40.02 4.34
802 860 0.321346 CAGGAAATGCCAAACCACCC 59.679 55.000 0.00 0.00 40.02 4.61
803 861 0.321346 CCAGGAAATGCCAAACCACC 59.679 55.000 0.00 0.00 40.02 4.61
804 862 0.320683 GCCAGGAAATGCCAAACCAC 60.321 55.000 0.00 0.00 40.02 4.16
805 863 1.814772 CGCCAGGAAATGCCAAACCA 61.815 55.000 0.00 0.00 40.02 3.67
806 864 1.079888 CGCCAGGAAATGCCAAACC 60.080 57.895 0.00 0.00 40.02 3.27
807 865 1.079888 CCGCCAGGAAATGCCAAAC 60.080 57.895 0.00 0.00 41.02 2.93
808 866 2.941616 GCCGCCAGGAAATGCCAAA 61.942 57.895 0.00 0.00 41.02 3.28
809 867 3.381136 GCCGCCAGGAAATGCCAA 61.381 61.111 0.00 0.00 41.02 4.52
810 868 4.365111 AGCCGCCAGGAAATGCCA 62.365 61.111 0.00 0.00 41.02 4.92
811 869 3.521796 GAGCCGCCAGGAAATGCC 61.522 66.667 0.00 0.00 41.02 4.40
812 870 3.521796 GGAGCCGCCAGGAAATGC 61.522 66.667 0.00 0.00 41.02 3.56
813 871 3.204827 CGGAGCCGCCAGGAAATG 61.205 66.667 0.00 0.00 41.02 2.32
814 872 4.489771 CCGGAGCCGCCAGGAAAT 62.490 66.667 0.00 0.00 41.02 2.17
819 877 4.697756 TTTCACCGGAGCCGCCAG 62.698 66.667 9.46 0.00 38.24 4.85
820 878 3.776347 TTTTTCACCGGAGCCGCCA 62.776 57.895 9.46 0.00 38.24 5.69
821 879 2.266376 GATTTTTCACCGGAGCCGCC 62.266 60.000 9.46 0.00 38.24 6.13
822 880 1.136774 GATTTTTCACCGGAGCCGC 59.863 57.895 9.46 0.00 38.24 6.53
823 881 1.933853 CTAGATTTTTCACCGGAGCCG 59.066 52.381 9.46 1.06 39.44 5.52
824 882 3.198872 CTCTAGATTTTTCACCGGAGCC 58.801 50.000 9.46 0.00 0.00 4.70
825 883 3.619038 CACTCTAGATTTTTCACCGGAGC 59.381 47.826 9.46 0.00 0.00 4.70
826 884 4.081642 TCCACTCTAGATTTTTCACCGGAG 60.082 45.833 9.46 0.00 0.00 4.63
827 885 3.835978 TCCACTCTAGATTTTTCACCGGA 59.164 43.478 9.46 0.00 0.00 5.14
828 886 4.184629 CTCCACTCTAGATTTTTCACCGG 58.815 47.826 0.00 0.00 0.00 5.28
829 887 4.627467 CACTCCACTCTAGATTTTTCACCG 59.373 45.833 0.00 0.00 0.00 4.94
830 888 4.938226 CCACTCCACTCTAGATTTTTCACC 59.062 45.833 0.00 0.00 0.00 4.02
831 889 5.794894 TCCACTCCACTCTAGATTTTTCAC 58.205 41.667 0.00 0.00 0.00 3.18
832 890 6.627087 ATCCACTCCACTCTAGATTTTTCA 57.373 37.500 0.00 0.00 0.00 2.69
833 891 7.070074 TCCTATCCACTCCACTCTAGATTTTTC 59.930 40.741 0.00 0.00 0.00 2.29
834 892 6.903534 TCCTATCCACTCCACTCTAGATTTTT 59.096 38.462 0.00 0.00 0.00 1.94
835 893 6.444704 TCCTATCCACTCCACTCTAGATTTT 58.555 40.000 0.00 0.00 0.00 1.82
836 894 6.031964 TCCTATCCACTCCACTCTAGATTT 57.968 41.667 0.00 0.00 0.00 2.17
837 895 5.671463 TCCTATCCACTCCACTCTAGATT 57.329 43.478 0.00 0.00 0.00 2.40
838 896 5.876691 ATCCTATCCACTCCACTCTAGAT 57.123 43.478 0.00 0.00 0.00 1.98
839 897 5.389520 CAATCCTATCCACTCCACTCTAGA 58.610 45.833 0.00 0.00 0.00 2.43
840 898 4.526262 CCAATCCTATCCACTCCACTCTAG 59.474 50.000 0.00 0.00 0.00 2.43
841 899 4.170053 TCCAATCCTATCCACTCCACTCTA 59.830 45.833 0.00 0.00 0.00 2.43
842 900 3.051803 TCCAATCCTATCCACTCCACTCT 60.052 47.826 0.00 0.00 0.00 3.24
843 901 3.070302 GTCCAATCCTATCCACTCCACTC 59.930 52.174 0.00 0.00 0.00 3.51
844 902 3.041946 GTCCAATCCTATCCACTCCACT 58.958 50.000 0.00 0.00 0.00 4.00
845 903 2.104963 GGTCCAATCCTATCCACTCCAC 59.895 54.545 0.00 0.00 0.00 4.02
846 904 2.293519 TGGTCCAATCCTATCCACTCCA 60.294 50.000 0.00 0.00 0.00 3.86
847 905 2.408565 TGGTCCAATCCTATCCACTCC 58.591 52.381 0.00 0.00 0.00 3.85
848 906 4.646572 GATTGGTCCAATCCTATCCACTC 58.353 47.826 27.95 6.12 42.90 3.51
849 907 4.713792 GATTGGTCCAATCCTATCCACT 57.286 45.455 27.95 0.13 42.90 4.00
862 920 2.180204 CGCGGATGTGGATTGGTCC 61.180 63.158 0.00 0.00 45.31 4.46
863 921 1.429148 GACGCGGATGTGGATTGGTC 61.429 60.000 12.47 0.00 0.00 4.02
864 922 1.449601 GACGCGGATGTGGATTGGT 60.450 57.895 12.47 0.00 0.00 3.67
865 923 1.449423 TGACGCGGATGTGGATTGG 60.449 57.895 12.47 0.00 0.00 3.16
866 924 0.740868 AGTGACGCGGATGTGGATTG 60.741 55.000 12.47 0.00 0.00 2.67
867 925 0.460284 GAGTGACGCGGATGTGGATT 60.460 55.000 12.47 0.00 0.00 3.01
868 926 1.141881 GAGTGACGCGGATGTGGAT 59.858 57.895 12.47 0.00 0.00 3.41
869 927 2.571757 GAGTGACGCGGATGTGGA 59.428 61.111 12.47 0.00 0.00 4.02
870 928 2.509336 GGAGTGACGCGGATGTGG 60.509 66.667 12.47 0.00 0.00 4.17
871 929 2.509336 GGGAGTGACGCGGATGTG 60.509 66.667 12.47 0.00 0.00 3.21
872 930 3.771160 GGGGAGTGACGCGGATGT 61.771 66.667 12.47 0.00 0.00 3.06
873 931 3.461773 AGGGGAGTGACGCGGATG 61.462 66.667 12.47 0.00 0.00 3.51
874 932 3.461773 CAGGGGAGTGACGCGGAT 61.462 66.667 12.47 0.00 0.00 4.18
878 936 4.008933 AGTGCAGGGGAGTGACGC 62.009 66.667 0.00 0.00 0.00 5.19
879 937 2.047844 CAGTGCAGGGGAGTGACG 60.048 66.667 0.00 0.00 0.00 4.35
880 938 2.359230 GCAGTGCAGGGGAGTGAC 60.359 66.667 11.09 0.00 0.00 3.67
881 939 2.189191 GATGCAGTGCAGGGGAGTGA 62.189 60.000 24.20 0.00 43.65 3.41
882 940 1.748122 GATGCAGTGCAGGGGAGTG 60.748 63.158 24.20 0.00 43.65 3.51
883 941 1.922369 AGATGCAGTGCAGGGGAGT 60.922 57.895 24.20 4.99 43.65 3.85
884 942 1.451567 CAGATGCAGTGCAGGGGAG 60.452 63.158 24.20 7.62 43.65 4.30
885 943 2.672908 CAGATGCAGTGCAGGGGA 59.327 61.111 24.20 0.00 43.65 4.81
886 944 3.138798 GCAGATGCAGTGCAGGGG 61.139 66.667 24.20 15.15 43.65 4.79
887 945 2.045242 AGCAGATGCAGTGCAGGG 60.045 61.111 24.20 15.50 43.65 4.45
888 946 0.177373 TAGAGCAGATGCAGTGCAGG 59.823 55.000 24.20 15.86 43.65 4.85
889 947 1.134759 AGTAGAGCAGATGCAGTGCAG 60.135 52.381 24.20 11.20 43.65 4.41
890 948 0.900421 AGTAGAGCAGATGCAGTGCA 59.100 50.000 22.22 22.22 43.82 4.57
891 949 1.569708 GAGTAGAGCAGATGCAGTGC 58.430 55.000 14.56 14.56 45.16 4.40
892 950 1.755959 AGGAGTAGAGCAGATGCAGTG 59.244 52.381 7.68 0.00 45.16 3.66
893 951 2.157640 AGGAGTAGAGCAGATGCAGT 57.842 50.000 7.68 0.00 45.16 4.40
894 952 2.954989 TGTAGGAGTAGAGCAGATGCAG 59.045 50.000 7.68 0.00 45.16 4.41
895 953 3.018423 TGTAGGAGTAGAGCAGATGCA 57.982 47.619 7.68 0.00 45.16 3.96
896 954 4.098654 TCTTTGTAGGAGTAGAGCAGATGC 59.901 45.833 0.00 0.00 42.49 3.91
897 955 5.843673 TCTTTGTAGGAGTAGAGCAGATG 57.156 43.478 0.00 0.00 0.00 2.90
898 956 5.955355 ACTTCTTTGTAGGAGTAGAGCAGAT 59.045 40.000 0.00 0.00 38.52 2.90
899 957 5.184096 CACTTCTTTGTAGGAGTAGAGCAGA 59.816 44.000 0.00 0.00 38.21 4.26
900 958 5.184096 TCACTTCTTTGTAGGAGTAGAGCAG 59.816 44.000 0.00 0.00 38.21 4.24
901 959 5.077564 TCACTTCTTTGTAGGAGTAGAGCA 58.922 41.667 0.00 0.00 38.21 4.26
902 960 5.646577 TCACTTCTTTGTAGGAGTAGAGC 57.353 43.478 0.00 0.00 38.21 4.09
903 961 5.184096 TGCTCACTTCTTTGTAGGAGTAGAG 59.816 44.000 0.00 0.00 38.21 2.43
904 962 5.077564 TGCTCACTTCTTTGTAGGAGTAGA 58.922 41.667 0.00 0.00 38.21 2.59
905 963 5.392767 TGCTCACTTCTTTGTAGGAGTAG 57.607 43.478 0.00 0.00 38.21 2.57
906 964 5.538813 TCTTGCTCACTTCTTTGTAGGAGTA 59.461 40.000 0.00 0.00 38.21 2.59
907 965 4.345257 TCTTGCTCACTTCTTTGTAGGAGT 59.655 41.667 0.00 0.00 41.12 3.85
908 966 4.887748 TCTTGCTCACTTCTTTGTAGGAG 58.112 43.478 0.00 0.00 32.76 3.69
909 967 4.955811 TCTTGCTCACTTCTTTGTAGGA 57.044 40.909 0.00 0.00 0.00 2.94
910 968 5.702670 TGAATCTTGCTCACTTCTTTGTAGG 59.297 40.000 0.00 0.00 0.00 3.18
911 969 6.648310 TCTGAATCTTGCTCACTTCTTTGTAG 59.352 38.462 0.00 0.00 0.00 2.74
912 970 6.524734 TCTGAATCTTGCTCACTTCTTTGTA 58.475 36.000 0.00 0.00 0.00 2.41
913 971 5.371526 TCTGAATCTTGCTCACTTCTTTGT 58.628 37.500 0.00 0.00 0.00 2.83
914 972 5.699915 TCTCTGAATCTTGCTCACTTCTTTG 59.300 40.000 0.00 0.00 0.00 2.77
915 973 5.862845 TCTCTGAATCTTGCTCACTTCTTT 58.137 37.500 0.00 0.00 0.00 2.52
916 974 5.480642 TCTCTGAATCTTGCTCACTTCTT 57.519 39.130 0.00 0.00 0.00 2.52
917 975 5.480642 TTCTCTGAATCTTGCTCACTTCT 57.519 39.130 0.00 0.00 0.00 2.85
918 976 5.873712 TGATTCTCTGAATCTTGCTCACTTC 59.126 40.000 17.60 0.00 0.00 3.01
919 977 5.802465 TGATTCTCTGAATCTTGCTCACTT 58.198 37.500 17.60 0.00 0.00 3.16
920 978 5.417754 TGATTCTCTGAATCTTGCTCACT 57.582 39.130 17.60 0.00 0.00 3.41
921 979 5.816258 TGATGATTCTCTGAATCTTGCTCAC 59.184 40.000 17.60 4.38 0.00 3.51
922 980 5.985911 TGATGATTCTCTGAATCTTGCTCA 58.014 37.500 17.60 12.85 0.00 4.26
923 981 5.049954 GCTGATGATTCTCTGAATCTTGCTC 60.050 44.000 17.60 11.15 0.00 4.26
924 982 4.817464 GCTGATGATTCTCTGAATCTTGCT 59.183 41.667 17.60 4.34 0.00 3.91
925 983 4.023878 GGCTGATGATTCTCTGAATCTTGC 60.024 45.833 17.60 15.03 0.00 4.01
926 984 4.515944 GGGCTGATGATTCTCTGAATCTTG 59.484 45.833 17.60 8.78 0.00 3.02
927 985 4.165565 TGGGCTGATGATTCTCTGAATCTT 59.834 41.667 17.60 12.88 0.00 2.40
928 986 3.715315 TGGGCTGATGATTCTCTGAATCT 59.285 43.478 17.60 6.82 0.00 2.40
929 987 4.082665 TGGGCTGATGATTCTCTGAATC 57.917 45.455 11.96 11.96 0.00 2.52
930 988 4.506979 GGATGGGCTGATGATTCTCTGAAT 60.507 45.833 0.00 0.00 0.00 2.57
931 989 3.181447 GGATGGGCTGATGATTCTCTGAA 60.181 47.826 0.00 0.00 0.00 3.02
932 990 2.371179 GGATGGGCTGATGATTCTCTGA 59.629 50.000 0.00 0.00 0.00 3.27
933 991 2.105993 TGGATGGGCTGATGATTCTCTG 59.894 50.000 0.00 0.00 0.00 3.35
934 992 2.415624 TGGATGGGCTGATGATTCTCT 58.584 47.619 0.00 0.00 0.00 3.10
935 993 2.945080 TGGATGGGCTGATGATTCTC 57.055 50.000 0.00 0.00 0.00 2.87
936 994 3.499926 GGATTGGATGGGCTGATGATTCT 60.500 47.826 0.00 0.00 0.00 2.40
937 995 2.824341 GGATTGGATGGGCTGATGATTC 59.176 50.000 0.00 0.00 0.00 2.52
938 996 2.178325 TGGATTGGATGGGCTGATGATT 59.822 45.455 0.00 0.00 0.00 2.57
939 997 1.784593 TGGATTGGATGGGCTGATGAT 59.215 47.619 0.00 0.00 0.00 2.45
940 998 1.224436 TGGATTGGATGGGCTGATGA 58.776 50.000 0.00 0.00 0.00 2.92
941 999 2.076207 TTGGATTGGATGGGCTGATG 57.924 50.000 0.00 0.00 0.00 3.07
942 1000 2.492196 GGATTGGATTGGATGGGCTGAT 60.492 50.000 0.00 0.00 0.00 2.90
943 1001 1.133388 GGATTGGATTGGATGGGCTGA 60.133 52.381 0.00 0.00 0.00 4.26
944 1002 1.335145 GGATTGGATTGGATGGGCTG 58.665 55.000 0.00 0.00 0.00 4.85
945 1003 0.935942 TGGATTGGATTGGATGGGCT 59.064 50.000 0.00 0.00 0.00 5.19
946 1004 1.897802 GATGGATTGGATTGGATGGGC 59.102 52.381 0.00 0.00 0.00 5.36
947 1005 3.537795 AGATGGATTGGATTGGATGGG 57.462 47.619 0.00 0.00 0.00 4.00
948 1006 4.737578 AGAAGATGGATTGGATTGGATGG 58.262 43.478 0.00 0.00 0.00 3.51
949 1007 5.632118 AGAGAAGATGGATTGGATTGGATG 58.368 41.667 0.00 0.00 0.00 3.51
950 1008 5.926580 AGAGAAGATGGATTGGATTGGAT 57.073 39.130 0.00 0.00 0.00 3.41
951 1009 5.431073 AGAAGAGAAGATGGATTGGATTGGA 59.569 40.000 0.00 0.00 0.00 3.53
952 1010 5.692928 AGAAGAGAAGATGGATTGGATTGG 58.307 41.667 0.00 0.00 0.00 3.16
953 1011 6.593807 AGAGAAGAGAAGATGGATTGGATTG 58.406 40.000 0.00 0.00 0.00 2.67
954 1012 6.828307 AGAGAAGAGAAGATGGATTGGATT 57.172 37.500 0.00 0.00 0.00 3.01
955 1013 6.616548 AGAAGAGAAGAGAAGATGGATTGGAT 59.383 38.462 0.00 0.00 0.00 3.41
956 1014 5.963253 AGAAGAGAAGAGAAGATGGATTGGA 59.037 40.000 0.00 0.00 0.00 3.53
957 1015 6.237887 AGAAGAGAAGAGAAGATGGATTGG 57.762 41.667 0.00 0.00 0.00 3.16
958 1016 6.098695 AGGAGAAGAGAAGAGAAGATGGATTG 59.901 42.308 0.00 0.00 0.00 2.67
959 1017 6.204555 AGGAGAAGAGAAGAGAAGATGGATT 58.795 40.000 0.00 0.00 0.00 3.01
960 1018 5.780731 AGGAGAAGAGAAGAGAAGATGGAT 58.219 41.667 0.00 0.00 0.00 3.41
961 1019 5.044179 AGAGGAGAAGAGAAGAGAAGATGGA 60.044 44.000 0.00 0.00 0.00 3.41
962 1020 5.203528 AGAGGAGAAGAGAAGAGAAGATGG 58.796 45.833 0.00 0.00 0.00 3.51
963 1021 6.153340 ACAAGAGGAGAAGAGAAGAGAAGATG 59.847 42.308 0.00 0.00 0.00 2.90
964 1022 6.256053 ACAAGAGGAGAAGAGAAGAGAAGAT 58.744 40.000 0.00 0.00 0.00 2.40
965 1023 5.640147 ACAAGAGGAGAAGAGAAGAGAAGA 58.360 41.667 0.00 0.00 0.00 2.87
966 1024 5.982890 ACAAGAGGAGAAGAGAAGAGAAG 57.017 43.478 0.00 0.00 0.00 2.85
967 1025 5.510520 GCAACAAGAGGAGAAGAGAAGAGAA 60.511 44.000 0.00 0.00 0.00 2.87
968 1026 4.021544 GCAACAAGAGGAGAAGAGAAGAGA 60.022 45.833 0.00 0.00 0.00 3.10
969 1027 4.021192 AGCAACAAGAGGAGAAGAGAAGAG 60.021 45.833 0.00 0.00 0.00 2.85
970 1028 3.900601 AGCAACAAGAGGAGAAGAGAAGA 59.099 43.478 0.00 0.00 0.00 2.87
971 1029 3.995705 CAGCAACAAGAGGAGAAGAGAAG 59.004 47.826 0.00 0.00 0.00 2.85
972 1030 3.805108 GCAGCAACAAGAGGAGAAGAGAA 60.805 47.826 0.00 0.00 0.00 2.87
973 1031 2.289320 GCAGCAACAAGAGGAGAAGAGA 60.289 50.000 0.00 0.00 0.00 3.10
974 1032 2.075338 GCAGCAACAAGAGGAGAAGAG 58.925 52.381 0.00 0.00 0.00 2.85
975 1033 1.417517 TGCAGCAACAAGAGGAGAAGA 59.582 47.619 0.00 0.00 0.00 2.87
976 1034 1.805345 CTGCAGCAACAAGAGGAGAAG 59.195 52.381 0.00 0.00 0.00 2.85
977 1035 1.141657 ACTGCAGCAACAAGAGGAGAA 59.858 47.619 15.27 0.00 0.00 2.87
978 1036 0.761187 ACTGCAGCAACAAGAGGAGA 59.239 50.000 15.27 0.00 0.00 3.71
979 1037 2.028658 TCTACTGCAGCAACAAGAGGAG 60.029 50.000 15.27 0.00 0.00 3.69
980 1038 1.970640 TCTACTGCAGCAACAAGAGGA 59.029 47.619 15.27 0.00 0.00 3.71
981 1039 2.462456 TCTACTGCAGCAACAAGAGG 57.538 50.000 15.27 0.00 0.00 3.69
982 1040 3.593096 TCATCTACTGCAGCAACAAGAG 58.407 45.455 15.27 0.04 0.00 2.85
983 1041 3.593096 CTCATCTACTGCAGCAACAAGA 58.407 45.455 15.27 9.51 0.00 3.02
984 1042 2.095532 GCTCATCTACTGCAGCAACAAG 59.904 50.000 15.27 5.95 31.96 3.16
985 1043 2.079158 GCTCATCTACTGCAGCAACAA 58.921 47.619 15.27 0.00 31.96 2.83
986 1044 1.002315 TGCTCATCTACTGCAGCAACA 59.998 47.619 15.27 0.00 36.06 3.33
987 1045 1.730501 TGCTCATCTACTGCAGCAAC 58.269 50.000 15.27 0.00 36.06 4.17
988 1046 2.285977 CATGCTCATCTACTGCAGCAA 58.714 47.619 15.27 0.64 39.65 3.91
989 1047 1.208776 ACATGCTCATCTACTGCAGCA 59.791 47.619 15.27 4.26 40.14 4.41
990 1048 1.865970 GACATGCTCATCTACTGCAGC 59.134 52.381 15.27 0.00 40.18 5.25
991 1049 2.125685 CGACATGCTCATCTACTGCAG 58.874 52.381 13.48 13.48 40.18 4.41
992 1050 1.202452 CCGACATGCTCATCTACTGCA 60.202 52.381 0.00 0.00 41.13 4.41
993 1051 1.495878 CCGACATGCTCATCTACTGC 58.504 55.000 0.00 0.00 0.00 4.40
1341 1441 0.037790 GAGCTTCTCCGTCAGCTGTT 60.038 55.000 14.67 0.00 46.72 3.16
1342 1442 1.181741 TGAGCTTCTCCGTCAGCTGT 61.182 55.000 14.67 0.00 46.72 4.40
1671 1771 2.464865 CCTCGGATTCATCTTCGACAC 58.535 52.381 0.00 0.00 0.00 3.67
1687 1787 1.827789 CTCCTCCTCCTCTGCCTCG 60.828 68.421 0.00 0.00 0.00 4.63
1784 1890 2.229792 AGAGAGATCGATCAGCTGGTC 58.770 52.381 26.47 17.48 0.00 4.02
1787 1893 4.304537 TCAAAGAGAGATCGATCAGCTG 57.695 45.455 26.47 7.63 0.00 4.24
1791 1897 4.618965 CAGCATCAAAGAGAGATCGATCA 58.381 43.478 26.47 4.23 0.00 2.92
1792 1898 3.429543 GCAGCATCAAAGAGAGATCGATC 59.570 47.826 17.91 17.91 0.00 3.69
1796 1905 4.318903 CGAATGCAGCATCAAAGAGAGATC 60.319 45.833 8.77 0.00 0.00 2.75
1844 1953 3.054878 CAGAATTGTCAGCCAAAACAGC 58.945 45.455 0.00 0.00 36.44 4.40
1863 1972 6.266168 TGGTGTATGAATAAAAAGGTGCAG 57.734 37.500 0.00 0.00 0.00 4.41
1881 1990 3.261643 TGCACTACAAGATCAGATGGTGT 59.738 43.478 0.00 0.00 0.00 4.16
1965 2079 9.778993 CACCAATTGTTCAATCAATCTTAGTAG 57.221 33.333 4.43 0.00 37.09 2.57
1966 2080 8.243426 GCACCAATTGTTCAATCAATCTTAGTA 58.757 33.333 4.43 0.00 37.09 1.82
1967 2081 7.092716 GCACCAATTGTTCAATCAATCTTAGT 58.907 34.615 4.43 0.00 37.09 2.24
1968 2082 6.532657 GGCACCAATTGTTCAATCAATCTTAG 59.467 38.462 4.43 0.00 37.09 2.18
1996 2110 2.167900 TGATGAGCTCACACATCAGAGG 59.832 50.000 20.97 0.00 45.32 3.69
2213 2334 3.976793 AGTTGAGTTGTGCACATGAAG 57.023 42.857 22.39 0.00 0.00 3.02
2254 2375 9.962783 TTAGTCTAGTTCAGTTAACTTGAGTTC 57.037 33.333 5.07 3.16 46.61 3.01
2259 2380 9.745880 TCTGTTTAGTCTAGTTCAGTTAACTTG 57.254 33.333 5.07 2.14 46.61 3.16
2266 2398 9.747293 GTTAACTTCTGTTTAGTCTAGTTCAGT 57.253 33.333 0.00 0.00 37.59 3.41
2405 2566 0.895100 GGTGCTCCTTGGCATTGACA 60.895 55.000 0.00 0.00 44.34 3.58
2431 2598 2.750637 GACGAGGAGGTCAGCCGA 60.751 66.667 0.00 0.00 40.50 5.54
2439 2606 0.812412 GAGAGGAGACGACGAGGAGG 60.812 65.000 0.00 0.00 0.00 4.30
2440 2607 0.812412 GGAGAGGAGACGACGAGGAG 60.812 65.000 0.00 0.00 0.00 3.69
2441 2608 1.221293 GGAGAGGAGACGACGAGGA 59.779 63.158 0.00 0.00 0.00 3.71
2442 2609 0.464735 ATGGAGAGGAGACGACGAGG 60.465 60.000 0.00 0.00 0.00 4.63
2443 2610 0.660488 CATGGAGAGGAGACGACGAG 59.340 60.000 0.00 0.00 0.00 4.18
2444 2611 0.252197 TCATGGAGAGGAGACGACGA 59.748 55.000 0.00 0.00 0.00 4.20
2445 2612 0.378962 GTCATGGAGAGGAGACGACG 59.621 60.000 0.00 0.00 0.00 5.12
2446 2613 1.133407 GTGTCATGGAGAGGAGACGAC 59.867 57.143 0.00 0.00 33.83 4.34
2447 2614 1.464734 GTGTCATGGAGAGGAGACGA 58.535 55.000 0.00 0.00 33.83 4.20
2448 2615 0.457851 GGTGTCATGGAGAGGAGACG 59.542 60.000 0.00 0.00 33.83 4.18
2449 2616 1.561643 TGGTGTCATGGAGAGGAGAC 58.438 55.000 0.00 0.00 0.00 3.36
2450 2617 2.182827 CTTGGTGTCATGGAGAGGAGA 58.817 52.381 0.00 0.00 0.00 3.71
2451 2618 1.905215 ACTTGGTGTCATGGAGAGGAG 59.095 52.381 0.00 0.00 0.00 3.69
2452 2619 1.902508 GACTTGGTGTCATGGAGAGGA 59.097 52.381 0.00 0.00 44.73 3.71
2453 2620 2.393271 GACTTGGTGTCATGGAGAGG 57.607 55.000 0.00 0.00 44.73 3.69
2564 2764 5.426504 GGACTGTCTGATCTCATGAAACAT 58.573 41.667 7.85 0.00 0.00 2.71
2573 2773 2.676463 GCACAAGGGACTGTCTGATCTC 60.676 54.545 7.85 0.00 40.86 2.75
2581 2784 3.957497 TGTTAATTTGCACAAGGGACTGT 59.043 39.130 0.00 0.00 40.86 3.55
2582 2785 4.278170 TCTGTTAATTTGCACAAGGGACTG 59.722 41.667 0.00 0.00 40.86 3.51
2684 2917 7.998383 AGCTCAAACATGTATCCCAATATTACA 59.002 33.333 0.00 0.00 0.00 2.41
2690 2923 4.858850 TCAGCTCAAACATGTATCCCAAT 58.141 39.130 0.00 0.00 0.00 3.16
2691 2924 4.019411 TCTCAGCTCAAACATGTATCCCAA 60.019 41.667 0.00 0.00 0.00 4.12
2692 2925 3.519107 TCTCAGCTCAAACATGTATCCCA 59.481 43.478 0.00 0.00 0.00 4.37
2693 2926 4.142609 TCTCAGCTCAAACATGTATCCC 57.857 45.455 0.00 0.00 0.00 3.85
2695 2928 6.985645 AGAGATTCTCAGCTCAAACATGTATC 59.014 38.462 15.83 0.00 33.62 2.24
2696 2929 6.887013 AGAGATTCTCAGCTCAAACATGTAT 58.113 36.000 15.83 0.00 33.62 2.29
2697 2930 6.291648 AGAGATTCTCAGCTCAAACATGTA 57.708 37.500 15.83 0.00 33.62 2.29
2828 3150 1.512694 GCAGGCTAATGGGTTGCAC 59.487 57.895 0.00 0.00 34.99 4.57
2856 3178 1.569479 GCCTCACCGCAGTTTCAGAC 61.569 60.000 0.00 0.00 0.00 3.51
2910 3232 1.661341 CATGGCACCTTCAGCTAGAC 58.339 55.000 0.00 0.00 0.00 2.59
2914 3236 1.076192 AAGCATGGCACCTTCAGCT 59.924 52.632 0.00 0.00 0.00 4.24
2915 3237 1.214589 CAAGCATGGCACCTTCAGC 59.785 57.895 0.00 0.00 0.00 4.26
2916 3238 1.888018 CCAAGCATGGCACCTTCAG 59.112 57.895 0.00 0.00 40.58 3.02
2951 3291 2.513897 CCGTCCGGGATGCTTTCC 60.514 66.667 10.90 0.00 44.62 3.13
2952 3292 3.202706 GCCGTCCGGGATGCTTTC 61.203 66.667 10.90 0.00 38.47 2.62
2953 3293 4.796495 GGCCGTCCGGGATGCTTT 62.796 66.667 17.55 0.00 38.47 3.51
2957 3297 4.935495 CCATGGCCGTCCGGGATG 62.935 72.222 9.38 9.38 38.47 3.51
2961 3301 4.530857 GACTCCATGGCCGTCCGG 62.531 72.222 18.17 0.24 38.57 5.14
2962 3302 4.873129 CGACTCCATGGCCGTCCG 62.873 72.222 21.18 15.01 34.14 4.79
2963 3303 4.530857 CCGACTCCATGGCCGTCC 62.531 72.222 21.18 9.44 0.00 4.79
3047 3394 6.808704 GCGCACATCTACTATCATTTCTGATA 59.191 38.462 0.30 0.00 42.23 2.15
3052 3399 4.507756 TGTGCGCACATCTACTATCATTTC 59.492 41.667 37.86 7.46 36.21 2.17
3053 3400 4.441792 TGTGCGCACATCTACTATCATTT 58.558 39.130 37.86 0.00 36.21 2.32
3057 3404 5.223382 ACTATTGTGCGCACATCTACTATC 58.777 41.667 40.78 12.26 41.52 2.08
3093 3463 1.807742 TGCGTATTTCAGAAAACCCCG 59.192 47.619 0.00 1.68 0.00 5.73
3111 3482 2.337532 CCTTGCCTTGCACTGTGC 59.662 61.111 25.15 25.15 45.29 4.57
3113 3484 2.123769 TGCCTTGCCTTGCACTGT 60.124 55.556 0.00 0.00 38.71 3.55
3114 3485 2.649034 CTGCCTTGCCTTGCACTG 59.351 61.111 0.00 0.00 38.71 3.66
3115 3486 2.599578 CCTGCCTTGCCTTGCACT 60.600 61.111 0.00 0.00 38.71 4.40
3118 3490 3.756727 GCTCCTGCCTTGCCTTGC 61.757 66.667 0.00 0.00 0.00 4.01
3135 3507 3.205338 TCCATCAAGGTATTCATGCACG 58.795 45.455 0.00 0.00 39.02 5.34
3136 3508 5.508489 CCAATCCATCAAGGTATTCATGCAC 60.508 44.000 0.00 0.00 39.02 4.57
3137 3509 4.585581 CCAATCCATCAAGGTATTCATGCA 59.414 41.667 0.00 0.00 39.02 3.96
3139 3511 5.049198 CGTCCAATCCATCAAGGTATTCATG 60.049 44.000 0.00 0.00 39.02 3.07
3140 3512 5.065914 CGTCCAATCCATCAAGGTATTCAT 58.934 41.667 0.00 0.00 39.02 2.57
3141 3513 4.450976 CGTCCAATCCATCAAGGTATTCA 58.549 43.478 0.00 0.00 39.02 2.57
3143 3515 3.820557 CCGTCCAATCCATCAAGGTATT 58.179 45.455 0.00 0.00 39.02 1.89
3144 3516 2.487265 GCCGTCCAATCCATCAAGGTAT 60.487 50.000 0.00 0.00 39.02 2.73
3145 3517 1.134220 GCCGTCCAATCCATCAAGGTA 60.134 52.381 0.00 0.00 39.02 3.08
3226 3604 1.203001 TGGGTGTGGATTCTTGGGTTC 60.203 52.381 0.00 0.00 0.00 3.62
3285 3673 5.897377 TCTTGGCCTTTTATAGTTCTTGC 57.103 39.130 3.32 0.00 0.00 4.01
3295 3714 8.766994 AGCATAGAAAATATCTTGGCCTTTTA 57.233 30.769 3.32 0.00 39.71 1.52
3296 3715 7.666063 AGCATAGAAAATATCTTGGCCTTTT 57.334 32.000 3.32 0.24 39.71 2.27
3368 3800 2.533266 TCTCGAGCTGTTCTTGCTTT 57.467 45.000 7.81 0.00 41.30 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.