Multiple sequence alignment - TraesCS5D01G563500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G563500 chr5D 100.000 3367 0 0 1 3367 562489335 562485969 0.000000e+00 6218.0
1 TraesCS5D01G563500 chr5D 99.386 2933 18 0 435 3367 562531746 562528814 0.000000e+00 5317.0
2 TraesCS5D01G563500 chr5D 92.906 1311 71 12 895 2205 562431955 562430667 0.000000e+00 1886.0
3 TraesCS5D01G563500 chr5D 88.474 1258 125 13 930 2187 561804277 561803040 0.000000e+00 1502.0
4 TraesCS5D01G563500 chr5D 96.330 436 14 2 1 434 127648533 127648098 0.000000e+00 715.0
5 TraesCS5D01G563500 chr5D 96.330 436 14 2 1 434 138642118 138641683 0.000000e+00 715.0
6 TraesCS5D01G563500 chr5D 96.092 435 16 1 1 434 562496831 562496397 0.000000e+00 708.0
7 TraesCS5D01G563500 chr5D 95.632 435 18 1 1 434 292374026 292373592 0.000000e+00 697.0
8 TraesCS5D01G563500 chr5D 89.655 348 33 3 3022 3367 459322615 459322269 1.110000e-119 440.0
9 TraesCS5D01G563500 chr5D 85.425 247 29 4 2701 2945 562532195 562531954 2.010000e-62 250.0
10 TraesCS5D01G563500 chr5D 89.773 88 7 2 728 814 562432090 562432004 9.880000e-21 111.0
11 TraesCS5D01G563500 chr7B 95.632 2816 76 13 596 3367 128023 130835 0.000000e+00 4475.0
12 TraesCS5D01G563500 chr7B 89.047 1479 109 23 728 2201 222095 223525 0.000000e+00 1784.0
13 TraesCS5D01G563500 chr7B 87.981 1273 132 13 936 2204 1154063 1155318 0.000000e+00 1483.0
14 TraesCS5D01G563500 chr7B 87.943 1269 133 13 936 2204 1020437 1021685 0.000000e+00 1478.0
15 TraesCS5D01G563500 chr7B 92.537 67 4 1 435 500 226316 226382 9.950000e-16 95.3
16 TraesCS5D01G563500 chr5B 93.478 1288 57 13 873 2155 712890418 712889153 0.000000e+00 1888.0
17 TraesCS5D01G563500 chr5B 87.726 1271 131 15 941 2204 711715644 711714392 0.000000e+00 1459.0
18 TraesCS5D01G563500 chr5B 92.517 147 0 5 630 774 712890578 712890441 2.050000e-47 200.0
19 TraesCS5D01G563500 chr5B 82.222 225 33 3 2691 2909 712896147 712895924 1.600000e-43 187.0
20 TraesCS5D01G563500 chr5B 96.667 60 2 0 435 494 712882285 712882226 2.140000e-17 100.0
21 TraesCS5D01G563500 chr4D 96.322 435 15 1 1 434 473604992 473604558 0.000000e+00 713.0
22 TraesCS5D01G563500 chr4D 90.847 437 33 7 1 434 268712198 268712630 2.250000e-161 579.0
23 TraesCS5D01G563500 chr4D 90.639 438 34 7 1 434 196025298 196025732 2.910000e-160 575.0
24 TraesCS5D01G563500 chr1D 94.266 436 19 4 1 434 243549755 243549324 0.000000e+00 662.0
25 TraesCS5D01G563500 chr1D 91.533 437 31 6 1 434 284736947 284737380 6.220000e-167 597.0
26 TraesCS5D01G563500 chr6D 89.080 348 33 4 3022 3367 57242744 57242400 8.630000e-116 427.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G563500 chr5D 562485969 562489335 3366 True 6218.00 6218 100.0000 1 3367 1 chr5D.!!$R6 3366
1 TraesCS5D01G563500 chr5D 562528814 562532195 3381 True 2783.50 5317 92.4055 435 3367 2 chr5D.!!$R9 2932
2 TraesCS5D01G563500 chr5D 561803040 561804277 1237 True 1502.00 1502 88.4740 930 2187 1 chr5D.!!$R5 1257
3 TraesCS5D01G563500 chr5D 562430667 562432090 1423 True 998.50 1886 91.3395 728 2205 2 chr5D.!!$R8 1477
4 TraesCS5D01G563500 chr7B 128023 130835 2812 False 4475.00 4475 95.6320 596 3367 1 chr7B.!!$F1 2771
5 TraesCS5D01G563500 chr7B 1154063 1155318 1255 False 1483.00 1483 87.9810 936 2204 1 chr7B.!!$F3 1268
6 TraesCS5D01G563500 chr7B 1020437 1021685 1248 False 1478.00 1478 87.9430 936 2204 1 chr7B.!!$F2 1268
7 TraesCS5D01G563500 chr7B 222095 226382 4287 False 939.65 1784 90.7920 435 2201 2 chr7B.!!$F4 1766
8 TraesCS5D01G563500 chr5B 711714392 711715644 1252 True 1459.00 1459 87.7260 941 2204 1 chr5B.!!$R1 1263
9 TraesCS5D01G563500 chr5B 712889153 712890578 1425 True 1044.00 1888 92.9975 630 2155 2 chr5B.!!$R4 1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.110238 CATCACGAACACTTTGGGCG 60.110 55.0 0.0 0.0 0.0 6.13 F
340 341 0.112412 ATCCGTCCCAAGTTGCCTTT 59.888 50.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2351 2793 5.538433 ACTTAGCATACAAACCAAACCATGT 59.462 36.0 0.0 0.0 0.0 3.21 R
2480 2932 0.755327 AAAGCAAAGAACACCGCCCT 60.755 50.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.170585 GTCCGCTGTACGTCGTGC 61.171 66.667 8.47 7.43 41.42 5.34
18 19 4.409218 TCCGCTGTACGTCGTGCC 62.409 66.667 8.47 0.00 41.42 5.01
21 22 4.712425 GCTGTACGTCGTGCCCGT 62.712 66.667 8.47 0.00 42.06 5.28
22 23 2.803670 CTGTACGTCGTGCCCGTG 60.804 66.667 8.47 0.00 39.22 4.94
37 38 3.890674 GTGGGCCTCATCACGAAC 58.109 61.111 4.53 0.00 0.00 3.95
39 40 1.003839 TGGGCCTCATCACGAACAC 60.004 57.895 4.53 0.00 0.00 3.32
40 41 1.296715 GGGCCTCATCACGAACACT 59.703 57.895 0.84 0.00 0.00 3.55
41 42 0.321653 GGGCCTCATCACGAACACTT 60.322 55.000 0.84 0.00 0.00 3.16
44 45 1.197721 GCCTCATCACGAACACTTTGG 59.802 52.381 0.00 0.00 0.00 3.28
45 46 1.806542 CCTCATCACGAACACTTTGGG 59.193 52.381 0.00 0.00 0.00 4.12
46 47 1.197721 CTCATCACGAACACTTTGGGC 59.802 52.381 0.00 0.00 0.00 5.36
47 48 0.110238 CATCACGAACACTTTGGGCG 60.110 55.000 0.00 0.00 0.00 6.13
49 50 0.462225 TCACGAACACTTTGGGCGAA 60.462 50.000 0.00 0.00 0.00 4.70
50 51 0.378962 CACGAACACTTTGGGCGAAA 59.621 50.000 0.00 0.00 0.00 3.46
53 54 1.535462 CGAACACTTTGGGCGAAATCT 59.465 47.619 0.00 0.00 0.00 2.40
54 55 2.412847 CGAACACTTTGGGCGAAATCTC 60.413 50.000 0.00 0.00 0.00 2.75
55 56 2.568623 ACACTTTGGGCGAAATCTCT 57.431 45.000 0.00 0.00 0.00 3.10
57 58 2.154462 CACTTTGGGCGAAATCTCTGT 58.846 47.619 0.00 0.00 0.00 3.41
58 59 2.160417 CACTTTGGGCGAAATCTCTGTC 59.840 50.000 0.00 0.00 0.00 3.51
61 62 3.904800 TTGGGCGAAATCTCTGTCATA 57.095 42.857 0.00 0.00 0.00 2.15
62 63 4.422073 TTGGGCGAAATCTCTGTCATAT 57.578 40.909 0.00 0.00 0.00 1.78
63 64 3.732212 TGGGCGAAATCTCTGTCATATG 58.268 45.455 0.00 0.00 0.00 1.78
66 67 4.576463 GGGCGAAATCTCTGTCATATGTTT 59.424 41.667 1.90 0.00 0.00 2.83
67 68 5.504665 GGGCGAAATCTCTGTCATATGTTTG 60.505 44.000 1.90 0.00 0.00 2.93
68 69 5.065218 GGCGAAATCTCTGTCATATGTTTGT 59.935 40.000 1.90 0.00 0.00 2.83
70 71 7.023575 GCGAAATCTCTGTCATATGTTTGTTT 58.976 34.615 1.90 0.00 0.00 2.83
71 72 7.217070 GCGAAATCTCTGTCATATGTTTGTTTC 59.783 37.037 1.90 5.45 0.00 2.78
72 73 7.693951 CGAAATCTCTGTCATATGTTTGTTTCC 59.306 37.037 1.90 0.00 0.00 3.13
73 74 6.668541 ATCTCTGTCATATGTTTGTTTCCG 57.331 37.500 1.90 0.00 0.00 4.30
74 75 5.547465 TCTCTGTCATATGTTTGTTTCCGT 58.453 37.500 1.90 0.00 0.00 4.69
75 76 5.637810 TCTCTGTCATATGTTTGTTTCCGTC 59.362 40.000 1.90 0.00 0.00 4.79
76 77 5.547465 TCTGTCATATGTTTGTTTCCGTCT 58.453 37.500 1.90 0.00 0.00 4.18
78 79 7.156000 TCTGTCATATGTTTGTTTCCGTCTTA 58.844 34.615 1.90 0.00 0.00 2.10
79 80 7.822334 TCTGTCATATGTTTGTTTCCGTCTTAT 59.178 33.333 1.90 0.00 0.00 1.73
80 81 8.330466 TGTCATATGTTTGTTTCCGTCTTATT 57.670 30.769 1.90 0.00 0.00 1.40
81 82 8.788806 TGTCATATGTTTGTTTCCGTCTTATTT 58.211 29.630 1.90 0.00 0.00 1.40
83 84 9.619316 TCATATGTTTGTTTCCGTCTTATTTTG 57.381 29.630 1.90 0.00 0.00 2.44
85 86 5.651530 TGTTTGTTTCCGTCTTATTTTGCA 58.348 33.333 0.00 0.00 0.00 4.08
87 88 6.254589 TGTTTGTTTCCGTCTTATTTTGCAAG 59.745 34.615 0.00 0.00 0.00 4.01
88 89 5.508200 TGTTTCCGTCTTATTTTGCAAGT 57.492 34.783 0.00 0.00 0.00 3.16
89 90 5.516090 TGTTTCCGTCTTATTTTGCAAGTC 58.484 37.500 0.00 0.00 0.00 3.01
90 91 5.066634 TGTTTCCGTCTTATTTTGCAAGTCA 59.933 36.000 0.00 0.00 0.00 3.41
91 92 5.759506 TTCCGTCTTATTTTGCAAGTCAA 57.240 34.783 0.00 0.00 0.00 3.18
93 94 6.325919 TCCGTCTTATTTTGCAAGTCAAAT 57.674 33.333 0.00 0.00 43.53 2.32
94 95 6.378582 TCCGTCTTATTTTGCAAGTCAAATC 58.621 36.000 0.00 0.00 43.53 2.17
95 96 6.016693 TCCGTCTTATTTTGCAAGTCAAATCA 60.017 34.615 0.00 0.00 43.53 2.57
96 97 6.808212 CCGTCTTATTTTGCAAGTCAAATCAT 59.192 34.615 0.00 0.00 43.53 2.45
97 98 7.329226 CCGTCTTATTTTGCAAGTCAAATCATT 59.671 33.333 0.00 0.00 43.53 2.57
98 99 8.702438 CGTCTTATTTTGCAAGTCAAATCATTT 58.298 29.630 0.00 0.00 43.53 2.32
99 100 9.801714 GTCTTATTTTGCAAGTCAAATCATTTG 57.198 29.630 3.46 3.46 43.53 2.32
100 101 9.545105 TCTTATTTTGCAAGTCAAATCATTTGT 57.455 25.926 9.98 0.00 43.53 2.83
104 105 9.857957 ATTTTGCAAGTCAAATCATTTGTTTTT 57.142 22.222 9.98 1.23 43.53 1.94
105 106 8.670804 TTTGCAAGTCAAATCATTTGTTTTTG 57.329 26.923 9.98 12.69 39.58 2.44
106 107 7.375106 TGCAAGTCAAATCATTTGTTTTTGT 57.625 28.000 9.98 0.00 41.36 2.83
107 108 7.814642 TGCAAGTCAAATCATTTGTTTTTGTT 58.185 26.923 9.98 0.00 41.36 2.83
108 109 8.295288 TGCAAGTCAAATCATTTGTTTTTGTTT 58.705 25.926 9.98 0.00 41.36 2.83
109 110 9.127006 GCAAGTCAAATCATTTGTTTTTGTTTT 57.873 25.926 9.98 0.00 41.36 2.43
115 116 9.920043 CAAATCATTTGTTTTTGTTTTGTTTCG 57.080 25.926 1.53 0.00 35.94 3.46
116 117 9.670719 AAATCATTTGTTTTTGTTTTGTTTCGT 57.329 22.222 0.00 0.00 0.00 3.85
117 118 8.652592 ATCATTTGTTTTTGTTTTGTTTCGTG 57.347 26.923 0.00 0.00 0.00 4.35
118 119 7.072030 TCATTTGTTTTTGTTTTGTTTCGTGG 58.928 30.769 0.00 0.00 0.00 4.94
119 120 5.986004 TTGTTTTTGTTTTGTTTCGTGGT 57.014 30.435 0.00 0.00 0.00 4.16
121 122 7.653767 TTGTTTTTGTTTTGTTTCGTGGTAT 57.346 28.000 0.00 0.00 0.00 2.73
122 123 7.653767 TGTTTTTGTTTTGTTTCGTGGTATT 57.346 28.000 0.00 0.00 0.00 1.89
123 124 7.730778 TGTTTTTGTTTTGTTTCGTGGTATTC 58.269 30.769 0.00 0.00 0.00 1.75
124 125 6.556146 TTTTGTTTTGTTTCGTGGTATTCG 57.444 33.333 0.00 0.00 0.00 3.34
126 127 5.085636 TGTTTTGTTTCGTGGTATTCGAG 57.914 39.130 0.00 0.00 38.52 4.04
127 128 4.571580 TGTTTTGTTTCGTGGTATTCGAGT 59.428 37.500 0.00 0.00 38.52 4.18
128 129 5.064962 TGTTTTGTTTCGTGGTATTCGAGTT 59.935 36.000 0.00 0.00 38.52 3.01
129 130 4.718858 TTGTTTCGTGGTATTCGAGTTG 57.281 40.909 0.00 0.00 38.52 3.16
130 131 2.477375 TGTTTCGTGGTATTCGAGTTGC 59.523 45.455 0.00 0.00 38.52 4.17
131 132 2.735134 GTTTCGTGGTATTCGAGTTGCT 59.265 45.455 0.00 0.00 38.52 3.91
132 133 2.736144 TCGTGGTATTCGAGTTGCTT 57.264 45.000 0.00 0.00 33.38 3.91
134 135 2.029739 TCGTGGTATTCGAGTTGCTTCA 60.030 45.455 0.00 0.00 33.38 3.02
135 136 2.734606 CGTGGTATTCGAGTTGCTTCAA 59.265 45.455 0.00 0.00 0.00 2.69
136 137 3.370978 CGTGGTATTCGAGTTGCTTCAAT 59.629 43.478 0.00 0.00 0.00 2.57
137 138 4.651994 GTGGTATTCGAGTTGCTTCAATG 58.348 43.478 0.00 0.00 0.00 2.82
138 139 4.154195 GTGGTATTCGAGTTGCTTCAATGT 59.846 41.667 0.00 0.00 0.00 2.71
139 140 4.391830 TGGTATTCGAGTTGCTTCAATGTC 59.608 41.667 0.00 0.00 0.00 3.06
140 141 4.391830 GGTATTCGAGTTGCTTCAATGTCA 59.608 41.667 0.00 0.00 0.00 3.58
141 142 5.106712 GGTATTCGAGTTGCTTCAATGTCAA 60.107 40.000 0.00 0.00 0.00 3.18
142 143 4.472691 TTCGAGTTGCTTCAATGTCAAG 57.527 40.909 0.00 0.00 0.00 3.02
143 144 3.466836 TCGAGTTGCTTCAATGTCAAGT 58.533 40.909 0.00 0.00 0.00 3.16
144 145 3.248363 TCGAGTTGCTTCAATGTCAAGTG 59.752 43.478 0.00 0.00 0.00 3.16
145 146 3.002656 CGAGTTGCTTCAATGTCAAGTGT 59.997 43.478 0.00 0.00 0.00 3.55
146 147 4.531332 GAGTTGCTTCAATGTCAAGTGTC 58.469 43.478 0.00 0.00 0.00 3.67
147 148 3.002656 AGTTGCTTCAATGTCAAGTGTCG 59.997 43.478 0.00 0.00 0.00 4.35
148 149 2.832563 TGCTTCAATGTCAAGTGTCGA 58.167 42.857 0.00 0.00 0.00 4.20
149 150 3.402110 TGCTTCAATGTCAAGTGTCGAT 58.598 40.909 0.00 0.00 0.00 3.59
150 151 3.814842 TGCTTCAATGTCAAGTGTCGATT 59.185 39.130 0.00 0.00 0.00 3.34
151 152 4.083855 TGCTTCAATGTCAAGTGTCGATTC 60.084 41.667 0.00 0.00 0.00 2.52
152 153 4.670221 GCTTCAATGTCAAGTGTCGATTCC 60.670 45.833 0.00 0.00 0.00 3.01
153 154 4.001618 TCAATGTCAAGTGTCGATTCCA 57.998 40.909 0.00 0.00 0.00 3.53
154 155 4.578871 TCAATGTCAAGTGTCGATTCCAT 58.421 39.130 0.00 0.00 0.00 3.41
156 157 5.580691 TCAATGTCAAGTGTCGATTCCATAC 59.419 40.000 0.00 0.00 0.00 2.39
158 159 3.513912 TGTCAAGTGTCGATTCCATACCT 59.486 43.478 0.00 0.00 0.00 3.08
159 160 4.113354 GTCAAGTGTCGATTCCATACCTC 58.887 47.826 0.00 0.00 0.00 3.85
161 162 2.040178 AGTGTCGATTCCATACCTCCC 58.960 52.381 0.00 0.00 0.00 4.30
162 163 1.070289 GTGTCGATTCCATACCTCCCC 59.930 57.143 0.00 0.00 0.00 4.81
164 165 2.178325 TGTCGATTCCATACCTCCCCTA 59.822 50.000 0.00 0.00 0.00 3.53
165 166 3.236896 GTCGATTCCATACCTCCCCTAA 58.763 50.000 0.00 0.00 0.00 2.69
166 167 3.258622 GTCGATTCCATACCTCCCCTAAG 59.741 52.174 0.00 0.00 0.00 2.18
167 168 2.028020 CGATTCCATACCTCCCCTAAGC 60.028 54.545 0.00 0.00 0.00 3.09
169 170 0.471211 TCCATACCTCCCCTAAGCGG 60.471 60.000 0.00 0.00 0.00 5.52
171 172 0.393077 CATACCTCCCCTAAGCGGTG 59.607 60.000 0.00 0.00 0.00 4.94
172 173 1.408453 ATACCTCCCCTAAGCGGTGC 61.408 60.000 0.00 0.00 0.00 5.01
173 174 2.525284 TACCTCCCCTAAGCGGTGCT 62.525 60.000 0.00 0.00 42.56 4.40
174 175 2.501610 CTCCCCTAAGCGGTGCTC 59.498 66.667 0.00 0.00 38.25 4.26
175 176 2.038975 TCCCCTAAGCGGTGCTCT 59.961 61.111 0.00 0.00 38.25 4.09
177 178 2.359169 CCCCTAAGCGGTGCTCTCA 61.359 63.158 0.00 0.00 38.25 3.27
178 179 1.690219 CCCCTAAGCGGTGCTCTCAT 61.690 60.000 0.00 0.00 38.25 2.90
180 181 1.620819 CCCTAAGCGGTGCTCTCATAT 59.379 52.381 0.00 0.00 38.25 1.78
182 183 3.495100 CCCTAAGCGGTGCTCTCATATTT 60.495 47.826 0.00 0.00 38.25 1.40
183 184 3.743396 CCTAAGCGGTGCTCTCATATTTC 59.257 47.826 0.00 0.00 38.25 2.17
185 186 4.672587 AAGCGGTGCTCTCATATTTCTA 57.327 40.909 0.00 0.00 38.25 2.10
187 188 4.564041 AGCGGTGCTCTCATATTTCTATG 58.436 43.478 0.00 0.00 30.62 2.23
188 189 4.039730 AGCGGTGCTCTCATATTTCTATGT 59.960 41.667 0.00 0.00 33.78 2.29
189 190 4.151335 GCGGTGCTCTCATATTTCTATGTG 59.849 45.833 0.00 0.00 36.80 3.21
191 192 5.509670 CGGTGCTCTCATATTTCTATGTGGA 60.510 44.000 0.00 0.00 36.80 4.02
192 193 6.471146 GGTGCTCTCATATTTCTATGTGGAT 58.529 40.000 0.00 0.00 36.80 3.41
193 194 7.577616 CGGTGCTCTCATATTTCTATGTGGATA 60.578 40.741 0.00 0.00 36.80 2.59
194 195 7.547370 GGTGCTCTCATATTTCTATGTGGATAC 59.453 40.741 0.00 0.00 36.80 2.24
195 196 8.310382 GTGCTCTCATATTTCTATGTGGATACT 58.690 37.037 0.00 0.00 36.80 2.12
196 197 9.533831 TGCTCTCATATTTCTATGTGGATACTA 57.466 33.333 0.00 0.00 36.80 1.82
200 201 9.593134 CTCATATTTCTATGTGGATACTAAGCC 57.407 37.037 0.00 0.00 36.80 4.35
201 202 9.326489 TCATATTTCTATGTGGATACTAAGCCT 57.674 33.333 0.00 0.00 36.80 4.58
202 203 9.950496 CATATTTCTATGTGGATACTAAGCCTT 57.050 33.333 0.00 0.00 31.76 4.35
204 205 7.676683 TTTCTATGTGGATACTAAGCCTTCT 57.323 36.000 0.00 0.00 37.61 2.85
205 206 7.676683 TTCTATGTGGATACTAAGCCTTCTT 57.323 36.000 0.00 0.00 36.35 2.52
206 207 7.055667 TCTATGTGGATACTAAGCCTTCTTG 57.944 40.000 0.00 0.00 33.85 3.02
207 208 5.957771 ATGTGGATACTAAGCCTTCTTGA 57.042 39.130 0.00 0.00 33.85 3.02
209 210 5.918608 TGTGGATACTAAGCCTTCTTGATC 58.081 41.667 0.00 0.00 33.85 2.92
210 211 5.425217 TGTGGATACTAAGCCTTCTTGATCA 59.575 40.000 0.00 0.00 33.85 2.92
211 212 6.100279 TGTGGATACTAAGCCTTCTTGATCAT 59.900 38.462 0.00 0.00 33.85 2.45
212 213 6.648725 GTGGATACTAAGCCTTCTTGATCATC 59.351 42.308 0.00 0.00 33.85 2.92
213 214 5.866633 GGATACTAAGCCTTCTTGATCATCG 59.133 44.000 0.00 0.00 33.85 3.84
215 216 4.942852 ACTAAGCCTTCTTGATCATCGAG 58.057 43.478 0.00 0.00 33.85 4.04
216 217 4.646945 ACTAAGCCTTCTTGATCATCGAGA 59.353 41.667 0.00 0.00 35.19 4.04
218 219 3.992643 AGCCTTCTTGATCATCGAGATG 58.007 45.455 5.35 7.97 36.81 2.90
219 220 3.387374 AGCCTTCTTGATCATCGAGATGT 59.613 43.478 5.35 1.29 36.81 3.06
220 221 3.740321 GCCTTCTTGATCATCGAGATGTC 59.260 47.826 5.35 9.77 36.81 3.06
222 223 5.539979 CCTTCTTGATCATCGAGATGTCAT 58.460 41.667 5.35 0.65 36.81 3.06
223 224 5.405873 CCTTCTTGATCATCGAGATGTCATG 59.594 44.000 5.35 14.70 36.81 3.07
224 225 4.304939 TCTTGATCATCGAGATGTCATGC 58.695 43.478 12.22 1.33 39.72 4.06
225 226 3.036075 TGATCATCGAGATGTCATGCC 57.964 47.619 12.22 0.00 39.72 4.40
226 227 2.366266 TGATCATCGAGATGTCATGCCA 59.634 45.455 12.22 0.00 39.72 4.92
228 229 3.480505 TCATCGAGATGTCATGCCAAT 57.519 42.857 12.22 0.00 39.72 3.16
230 231 3.811497 TCATCGAGATGTCATGCCAATTC 59.189 43.478 12.22 0.00 39.72 2.17
231 232 3.548745 TCGAGATGTCATGCCAATTCT 57.451 42.857 0.00 0.00 0.00 2.40
233 234 3.133542 TCGAGATGTCATGCCAATTCTCT 59.866 43.478 5.97 0.00 0.00 3.10
234 235 3.875727 CGAGATGTCATGCCAATTCTCTT 59.124 43.478 5.97 0.00 0.00 2.85
235 236 4.025061 CGAGATGTCATGCCAATTCTCTTC 60.025 45.833 5.97 0.00 0.00 2.87
236 237 4.205587 AGATGTCATGCCAATTCTCTTCC 58.794 43.478 0.00 0.00 0.00 3.46
237 238 3.438216 TGTCATGCCAATTCTCTTCCA 57.562 42.857 0.00 0.00 0.00 3.53
238 239 3.765381 TGTCATGCCAATTCTCTTCCAA 58.235 40.909 0.00 0.00 0.00 3.53
239 240 3.507233 TGTCATGCCAATTCTCTTCCAAC 59.493 43.478 0.00 0.00 0.00 3.77
240 241 3.091545 TCATGCCAATTCTCTTCCAACC 58.908 45.455 0.00 0.00 0.00 3.77
243 244 1.468914 GCCAATTCTCTTCCAACCGAC 59.531 52.381 0.00 0.00 0.00 4.79
244 245 1.732259 CCAATTCTCTTCCAACCGACG 59.268 52.381 0.00 0.00 0.00 5.12
245 246 2.413837 CAATTCTCTTCCAACCGACGT 58.586 47.619 0.00 0.00 0.00 4.34
246 247 2.080286 ATTCTCTTCCAACCGACGTG 57.920 50.000 0.00 0.00 0.00 4.49
248 249 1.006102 CTCTTCCAACCGACGTGCT 60.006 57.895 0.00 0.00 0.00 4.40
249 250 0.600255 CTCTTCCAACCGACGTGCTT 60.600 55.000 0.00 0.00 0.00 3.91
250 251 0.599204 TCTTCCAACCGACGTGCTTC 60.599 55.000 0.00 0.00 0.00 3.86
251 252 0.600255 CTTCCAACCGACGTGCTTCT 60.600 55.000 0.00 0.00 0.00 2.85
252 253 0.599204 TTCCAACCGACGTGCTTCTC 60.599 55.000 0.00 0.00 0.00 2.87
253 254 1.006102 CCAACCGACGTGCTTCTCT 60.006 57.895 0.00 0.00 0.00 3.10
254 255 0.600255 CCAACCGACGTGCTTCTCTT 60.600 55.000 0.00 0.00 0.00 2.85
255 256 0.784778 CAACCGACGTGCTTCTCTTC 59.215 55.000 0.00 0.00 0.00 2.87
256 257 0.387929 AACCGACGTGCTTCTCTTCA 59.612 50.000 0.00 0.00 0.00 3.02
257 258 0.387929 ACCGACGTGCTTCTCTTCAA 59.612 50.000 0.00 0.00 0.00 2.69
258 259 1.063806 CCGACGTGCTTCTCTTCAAG 58.936 55.000 0.00 0.00 0.00 3.02
262 263 1.412710 ACGTGCTTCTCTTCAAGTGGA 59.587 47.619 0.00 0.00 0.00 4.02
263 264 2.037772 ACGTGCTTCTCTTCAAGTGGAT 59.962 45.455 0.00 0.00 0.00 3.41
264 265 2.670414 CGTGCTTCTCTTCAAGTGGATC 59.330 50.000 0.00 0.00 0.00 3.36
266 267 2.275318 GCTTCTCTTCAAGTGGATCCG 58.725 52.381 7.39 0.00 0.00 4.18
267 268 2.898705 CTTCTCTTCAAGTGGATCCGG 58.101 52.381 7.39 0.00 0.00 5.14
268 269 1.938585 TCTCTTCAAGTGGATCCGGT 58.061 50.000 7.39 0.00 0.00 5.28
272 273 2.571653 TCTTCAAGTGGATCCGGTCATT 59.428 45.455 7.39 0.00 0.00 2.57
273 274 3.009033 TCTTCAAGTGGATCCGGTCATTT 59.991 43.478 7.39 0.00 0.00 2.32
274 275 2.985896 TCAAGTGGATCCGGTCATTTC 58.014 47.619 7.39 0.00 0.00 2.17
275 276 2.304470 TCAAGTGGATCCGGTCATTTCA 59.696 45.455 7.39 0.00 0.00 2.69
277 278 2.711542 AGTGGATCCGGTCATTTCAAC 58.288 47.619 7.39 0.00 0.00 3.18
278 279 2.039746 AGTGGATCCGGTCATTTCAACA 59.960 45.455 7.39 0.00 0.00 3.33
279 280 3.016736 GTGGATCCGGTCATTTCAACAT 58.983 45.455 7.39 0.00 0.00 2.71
280 281 3.443681 GTGGATCCGGTCATTTCAACATT 59.556 43.478 7.39 0.00 0.00 2.71
281 282 3.694072 TGGATCCGGTCATTTCAACATTC 59.306 43.478 7.39 0.00 0.00 2.67
283 284 1.466950 TCCGGTCATTTCAACATTCGC 59.533 47.619 0.00 0.00 0.00 4.70
285 286 1.136085 CGGTCATTTCAACATTCGCGT 60.136 47.619 5.77 0.00 0.00 6.01
286 287 2.241722 GGTCATTTCAACATTCGCGTG 58.758 47.619 5.77 0.00 0.00 5.34
287 288 2.095969 GGTCATTTCAACATTCGCGTGA 60.096 45.455 5.77 0.00 0.00 4.35
288 289 3.426159 GGTCATTTCAACATTCGCGTGAT 60.426 43.478 5.77 0.00 0.00 3.06
289 290 3.780801 GTCATTTCAACATTCGCGTGATC 59.219 43.478 5.77 0.00 0.00 2.92
292 293 4.418013 TTTCAACATTCGCGTGATCAAT 57.582 36.364 5.77 0.00 0.00 2.57
293 294 4.418013 TTCAACATTCGCGTGATCAATT 57.582 36.364 5.77 0.00 0.00 2.32
294 295 4.002267 TCAACATTCGCGTGATCAATTC 57.998 40.909 5.77 0.00 0.00 2.17
295 296 3.684305 TCAACATTCGCGTGATCAATTCT 59.316 39.130 5.77 0.00 0.00 2.40
296 297 4.867608 TCAACATTCGCGTGATCAATTCTA 59.132 37.500 5.77 0.00 0.00 2.10
297 298 5.350091 TCAACATTCGCGTGATCAATTCTAA 59.650 36.000 5.77 0.00 0.00 2.10
299 300 4.870426 ACATTCGCGTGATCAATTCTAAGT 59.130 37.500 5.77 0.00 0.00 2.24
300 301 5.351465 ACATTCGCGTGATCAATTCTAAGTT 59.649 36.000 5.77 0.00 0.00 2.66
302 303 5.856126 TCGCGTGATCAATTCTAAGTTTT 57.144 34.783 5.77 0.00 0.00 2.43
303 304 5.854157 TCGCGTGATCAATTCTAAGTTTTC 58.146 37.500 5.77 0.00 0.00 2.29
304 305 5.637810 TCGCGTGATCAATTCTAAGTTTTCT 59.362 36.000 5.77 0.00 0.00 2.52
305 306 5.954349 CGCGTGATCAATTCTAAGTTTTCTC 59.046 40.000 0.00 0.00 0.00 2.87
306 307 6.401047 CGCGTGATCAATTCTAAGTTTTCTCA 60.401 38.462 0.00 0.00 0.00 3.27
308 309 7.269297 GCGTGATCAATTCTAAGTTTTCTCAAC 59.731 37.037 0.00 0.00 0.00 3.18
309 310 7.475565 CGTGATCAATTCTAAGTTTTCTCAACG 59.524 37.037 0.00 0.00 0.00 4.10
310 311 7.746475 GTGATCAATTCTAAGTTTTCTCAACGG 59.254 37.037 0.00 0.00 0.00 4.44
311 312 7.444183 TGATCAATTCTAAGTTTTCTCAACGGT 59.556 33.333 0.00 0.00 0.00 4.83
312 313 6.954944 TCAATTCTAAGTTTTCTCAACGGTG 58.045 36.000 0.00 0.00 0.00 4.94
313 314 6.540914 TCAATTCTAAGTTTTCTCAACGGTGT 59.459 34.615 0.00 0.00 0.00 4.16
314 315 6.937436 ATTCTAAGTTTTCTCAACGGTGTT 57.063 33.333 0.00 0.00 0.00 3.32
315 316 6.746745 TTCTAAGTTTTCTCAACGGTGTTT 57.253 33.333 0.00 0.00 0.00 2.83
319 320 5.128992 AGTTTTCTCAACGGTGTTTGTTT 57.871 34.783 0.00 0.00 0.00 2.83
320 321 5.158494 AGTTTTCTCAACGGTGTTTGTTTC 58.842 37.500 0.00 0.00 0.00 2.78
321 322 4.768130 TTTCTCAACGGTGTTTGTTTCA 57.232 36.364 0.00 0.00 0.00 2.69
325 326 2.032302 TCAACGGTGTTTGTTTCATCCG 59.968 45.455 0.00 0.00 42.94 4.18
326 327 1.670791 ACGGTGTTTGTTTCATCCGT 58.329 45.000 0.00 0.00 44.87 4.69
327 328 1.600485 ACGGTGTTTGTTTCATCCGTC 59.400 47.619 0.00 0.00 46.33 4.79
328 329 1.069500 CGGTGTTTGTTTCATCCGTCC 60.069 52.381 0.00 0.00 34.38 4.79
330 331 1.950909 GTGTTTGTTTCATCCGTCCCA 59.049 47.619 0.00 0.00 0.00 4.37
332 333 2.621055 TGTTTGTTTCATCCGTCCCAAG 59.379 45.455 0.00 0.00 0.00 3.61
333 334 2.621526 GTTTGTTTCATCCGTCCCAAGT 59.378 45.455 0.00 0.00 0.00 3.16
334 335 2.649531 TGTTTCATCCGTCCCAAGTT 57.350 45.000 0.00 0.00 0.00 2.66
335 336 2.226330 TGTTTCATCCGTCCCAAGTTG 58.774 47.619 0.00 0.00 0.00 3.16
336 337 1.068541 GTTTCATCCGTCCCAAGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
337 338 0.608035 TTCATCCGTCCCAAGTTGCC 60.608 55.000 0.00 0.00 0.00 4.52
339 340 0.609131 CATCCGTCCCAAGTTGCCTT 60.609 55.000 0.00 0.00 0.00 4.35
340 341 0.112412 ATCCGTCCCAAGTTGCCTTT 59.888 50.000 0.00 0.00 0.00 3.11
343 344 1.318576 CGTCCCAAGTTGCCTTTCTT 58.681 50.000 0.00 0.00 0.00 2.52
345 346 2.100749 CGTCCCAAGTTGCCTTTCTTTT 59.899 45.455 0.00 0.00 0.00 2.27
346 347 3.430236 CGTCCCAAGTTGCCTTTCTTTTT 60.430 43.478 0.00 0.00 0.00 1.94
350 351 3.123050 CAAGTTGCCTTTCTTTTTCCCG 58.877 45.455 0.00 0.00 0.00 5.14
351 352 1.068588 AGTTGCCTTTCTTTTTCCCGC 59.931 47.619 0.00 0.00 0.00 6.13
353 354 1.292223 GCCTTTCTTTTTCCCGCCC 59.708 57.895 0.00 0.00 0.00 6.13
354 355 1.185618 GCCTTTCTTTTTCCCGCCCT 61.186 55.000 0.00 0.00 0.00 5.19
355 356 0.888619 CCTTTCTTTTTCCCGCCCTC 59.111 55.000 0.00 0.00 0.00 4.30
356 357 0.888619 CTTTCTTTTTCCCGCCCTCC 59.111 55.000 0.00 0.00 0.00 4.30
357 358 0.541063 TTTCTTTTTCCCGCCCTCCC 60.541 55.000 0.00 0.00 0.00 4.30
358 359 1.721093 TTCTTTTTCCCGCCCTCCCA 61.721 55.000 0.00 0.00 0.00 4.37
360 361 3.516949 TTTTTCCCGCCCTCCCACC 62.517 63.158 0.00 0.00 0.00 4.61
365 366 3.979497 CCGCCCTCCCACCCTTTT 61.979 66.667 0.00 0.00 0.00 2.27
366 367 2.117423 CGCCCTCCCACCCTTTTT 59.883 61.111 0.00 0.00 0.00 1.94
367 368 1.977009 CGCCCTCCCACCCTTTTTC 60.977 63.158 0.00 0.00 0.00 2.29
368 369 1.465172 GCCCTCCCACCCTTTTTCT 59.535 57.895 0.00 0.00 0.00 2.52
370 371 1.924731 CCCTCCCACCCTTTTTCTTC 58.075 55.000 0.00 0.00 0.00 2.87
371 372 1.146982 CCCTCCCACCCTTTTTCTTCA 59.853 52.381 0.00 0.00 0.00 3.02
372 373 2.519013 CCTCCCACCCTTTTTCTTCAG 58.481 52.381 0.00 0.00 0.00 3.02
373 374 2.519013 CTCCCACCCTTTTTCTTCAGG 58.481 52.381 0.00 0.00 0.00 3.86
385 386 7.766283 CCTTTTTCTTCAGGGACTCATATTTC 58.234 38.462 0.00 0.00 34.60 2.17
386 387 7.613411 CCTTTTTCTTCAGGGACTCATATTTCT 59.387 37.037 0.00 0.00 34.60 2.52
391 392 9.838339 TTCTTCAGGGACTCATATTTCTTAATC 57.162 33.333 0.00 0.00 34.60 1.75
392 393 8.992349 TCTTCAGGGACTCATATTTCTTAATCA 58.008 33.333 0.00 0.00 34.60 2.57
394 395 9.618890 TTCAGGGACTCATATTTCTTAATCAAG 57.381 33.333 0.00 0.00 34.60 3.02
395 396 8.772250 TCAGGGACTCATATTTCTTAATCAAGT 58.228 33.333 0.00 0.00 34.60 3.16
416 417 9.699410 TCAAGTATCATTTTATTGATGGGAAGT 57.301 29.630 0.00 0.00 36.97 3.01
417 418 9.956720 CAAGTATCATTTTATTGATGGGAAGTC 57.043 33.333 0.00 0.00 36.97 3.01
419 420 9.566432 AGTATCATTTTATTGATGGGAAGTCTC 57.434 33.333 0.00 0.00 36.97 3.36
421 422 8.688747 ATCATTTTATTGATGGGAAGTCTCTC 57.311 34.615 0.00 0.00 35.05 3.20
422 423 7.056635 TCATTTTATTGATGGGAAGTCTCTCC 58.943 38.462 0.00 0.00 34.41 3.71
423 424 6.387192 TTTTATTGATGGGAAGTCTCTCCA 57.613 37.500 0.00 0.00 37.20 3.86
425 426 6.581388 TTATTGATGGGAAGTCTCTCCATT 57.419 37.500 7.95 0.00 40.96 3.16
426 427 3.920231 TGATGGGAAGTCTCTCCATTG 57.080 47.619 7.95 0.00 40.96 2.82
427 428 3.184628 TGATGGGAAGTCTCTCCATTGT 58.815 45.455 7.95 0.00 40.96 2.71
430 431 4.453480 TGGGAAGTCTCTCCATTGTTTT 57.547 40.909 4.21 0.00 37.20 2.43
431 432 4.398319 TGGGAAGTCTCTCCATTGTTTTC 58.602 43.478 4.21 0.00 37.20 2.29
432 433 3.759086 GGGAAGTCTCTCCATTGTTTTCC 59.241 47.826 0.00 0.00 37.20 3.13
433 434 3.437049 GGAAGTCTCTCCATTGTTTTCCG 59.563 47.826 0.00 0.00 35.36 4.30
434 435 4.315803 GAAGTCTCTCCATTGTTTTCCGA 58.684 43.478 0.00 0.00 0.00 4.55
435 436 4.559862 AGTCTCTCCATTGTTTTCCGAT 57.440 40.909 0.00 0.00 0.00 4.18
436 437 4.256920 AGTCTCTCCATTGTTTTCCGATG 58.743 43.478 0.00 0.00 0.00 3.84
437 438 3.009723 TCTCTCCATTGTTTTCCGATGC 58.990 45.455 0.00 0.00 0.00 3.91
782 800 7.418025 GGCCAGCTTAAGATAAGAAGAAGAGTA 60.418 40.741 6.67 0.00 0.00 2.59
2328 2753 3.006537 GCCCTATGCCTCGTATAAGTTGA 59.993 47.826 0.00 0.00 0.00 3.18
2480 2932 6.174720 AGATTAGATTATTCCTTGCGACCA 57.825 37.500 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.170585 GCACGACGTACAGCGGAC 61.171 66.667 0.00 0.00 46.52 4.79
1 2 4.409218 GGCACGACGTACAGCGGA 62.409 66.667 0.00 0.00 46.52 5.54
5 6 2.803670 CACGGGCACGACGTACAG 60.804 66.667 19.19 0.02 43.58 2.74
21 22 1.003839 GTGTTCGTGATGAGGCCCA 60.004 57.895 0.00 0.00 0.00 5.36
22 23 0.321653 AAGTGTTCGTGATGAGGCCC 60.322 55.000 0.00 0.00 0.00 5.80
24 25 1.197721 CCAAAGTGTTCGTGATGAGGC 59.802 52.381 0.00 0.00 0.00 4.70
25 26 1.806542 CCCAAAGTGTTCGTGATGAGG 59.193 52.381 0.00 0.00 0.00 3.86
26 27 1.197721 GCCCAAAGTGTTCGTGATGAG 59.802 52.381 0.00 0.00 0.00 2.90
28 29 0.110238 CGCCCAAAGTGTTCGTGATG 60.110 55.000 0.00 0.00 0.00 3.07
30 31 0.462225 TTCGCCCAAAGTGTTCGTGA 60.462 50.000 0.00 0.00 0.00 4.35
31 32 0.378962 TTTCGCCCAAAGTGTTCGTG 59.621 50.000 0.00 0.00 0.00 4.35
32 33 1.265905 GATTTCGCCCAAAGTGTTCGT 59.734 47.619 0.00 0.00 0.00 3.85
33 34 1.535462 AGATTTCGCCCAAAGTGTTCG 59.465 47.619 0.00 0.00 0.00 3.95
34 35 2.814336 AGAGATTTCGCCCAAAGTGTTC 59.186 45.455 0.00 0.00 0.00 3.18
35 36 2.554032 CAGAGATTTCGCCCAAAGTGTT 59.446 45.455 0.00 0.00 0.00 3.32
37 38 2.154462 ACAGAGATTTCGCCCAAAGTG 58.846 47.619 0.00 0.00 0.00 3.16
39 40 2.426522 TGACAGAGATTTCGCCCAAAG 58.573 47.619 0.00 0.00 0.00 2.77
40 41 2.559698 TGACAGAGATTTCGCCCAAA 57.440 45.000 0.00 0.00 0.00 3.28
41 42 2.787473 ATGACAGAGATTTCGCCCAA 57.213 45.000 0.00 0.00 0.00 4.12
44 45 5.065218 ACAAACATATGACAGAGATTTCGCC 59.935 40.000 10.38 0.00 0.00 5.54
45 46 6.111768 ACAAACATATGACAGAGATTTCGC 57.888 37.500 10.38 0.00 0.00 4.70
46 47 7.693951 GGAAACAAACATATGACAGAGATTTCG 59.306 37.037 10.38 0.00 0.00 3.46
47 48 7.693951 CGGAAACAAACATATGACAGAGATTTC 59.306 37.037 10.38 9.16 0.00 2.17
49 50 6.655003 ACGGAAACAAACATATGACAGAGATT 59.345 34.615 10.38 0.00 0.00 2.40
50 51 6.173339 ACGGAAACAAACATATGACAGAGAT 58.827 36.000 10.38 0.00 0.00 2.75
53 54 5.547465 AGACGGAAACAAACATATGACAGA 58.453 37.500 10.38 0.00 0.00 3.41
54 55 5.862924 AGACGGAAACAAACATATGACAG 57.137 39.130 10.38 0.68 0.00 3.51
55 56 7.915293 ATAAGACGGAAACAAACATATGACA 57.085 32.000 10.38 0.00 0.00 3.58
57 58 9.619316 CAAAATAAGACGGAAACAAACATATGA 57.381 29.630 10.38 0.00 0.00 2.15
58 59 8.372521 GCAAAATAAGACGGAAACAAACATATG 58.627 33.333 0.00 0.00 0.00 1.78
61 62 6.276847 TGCAAAATAAGACGGAAACAAACAT 58.723 32.000 0.00 0.00 0.00 2.71
62 63 5.651530 TGCAAAATAAGACGGAAACAAACA 58.348 33.333 0.00 0.00 0.00 2.83
63 64 6.254804 ACTTGCAAAATAAGACGGAAACAAAC 59.745 34.615 0.00 0.00 0.00 2.93
66 67 5.066634 TGACTTGCAAAATAAGACGGAAACA 59.933 36.000 0.00 0.00 0.00 2.83
67 68 5.516090 TGACTTGCAAAATAAGACGGAAAC 58.484 37.500 0.00 0.00 0.00 2.78
68 69 5.759506 TGACTTGCAAAATAAGACGGAAA 57.240 34.783 0.00 0.00 0.00 3.13
70 71 5.759506 TTTGACTTGCAAAATAAGACGGA 57.240 34.783 0.00 0.00 43.18 4.69
81 82 7.814642 ACAAAAACAAATGATTTGACTTGCAA 58.185 26.923 23.37 0.00 43.26 4.08
83 84 8.672214 AAACAAAAACAAATGATTTGACTTGC 57.328 26.923 23.37 0.00 43.26 4.01
89 90 9.920043 CGAAACAAAACAAAAACAAATGATTTG 57.080 25.926 15.82 15.82 45.95 2.32
90 91 9.670719 ACGAAACAAAACAAAAACAAATGATTT 57.329 22.222 0.00 0.00 0.00 2.17
91 92 9.111702 CACGAAACAAAACAAAAACAAATGATT 57.888 25.926 0.00 0.00 0.00 2.57
93 94 7.072030 CCACGAAACAAAACAAAAACAAATGA 58.928 30.769 0.00 0.00 0.00 2.57
94 95 6.853362 ACCACGAAACAAAACAAAAACAAATG 59.147 30.769 0.00 0.00 0.00 2.32
95 96 6.960468 ACCACGAAACAAAACAAAAACAAAT 58.040 28.000 0.00 0.00 0.00 2.32
96 97 6.359480 ACCACGAAACAAAACAAAAACAAA 57.641 29.167 0.00 0.00 0.00 2.83
97 98 5.986004 ACCACGAAACAAAACAAAAACAA 57.014 30.435 0.00 0.00 0.00 2.83
98 99 7.410513 CGAATACCACGAAACAAAACAAAAACA 60.411 33.333 0.00 0.00 0.00 2.83
99 100 6.890351 CGAATACCACGAAACAAAACAAAAAC 59.110 34.615 0.00 0.00 0.00 2.43
100 101 6.805271 TCGAATACCACGAAACAAAACAAAAA 59.195 30.769 0.00 0.00 36.84 1.94
104 105 4.571580 ACTCGAATACCACGAAACAAAACA 59.428 37.500 0.00 0.00 39.23 2.83
105 106 5.086888 ACTCGAATACCACGAAACAAAAC 57.913 39.130 0.00 0.00 39.23 2.43
106 107 5.503498 CAACTCGAATACCACGAAACAAAA 58.497 37.500 0.00 0.00 39.23 2.44
107 108 4.553156 GCAACTCGAATACCACGAAACAAA 60.553 41.667 0.00 0.00 39.23 2.83
108 109 3.059461 GCAACTCGAATACCACGAAACAA 60.059 43.478 0.00 0.00 39.23 2.83
109 110 2.477375 GCAACTCGAATACCACGAAACA 59.523 45.455 0.00 0.00 39.23 2.83
110 111 2.735134 AGCAACTCGAATACCACGAAAC 59.265 45.455 0.00 0.00 39.23 2.78
111 112 3.034721 AGCAACTCGAATACCACGAAA 57.965 42.857 0.00 0.00 39.23 3.46
112 113 2.736144 AGCAACTCGAATACCACGAA 57.264 45.000 0.00 0.00 39.23 3.85
113 114 2.029739 TGAAGCAACTCGAATACCACGA 60.030 45.455 0.00 0.00 38.11 4.35
114 115 2.333926 TGAAGCAACTCGAATACCACG 58.666 47.619 0.00 0.00 0.00 4.94
115 116 4.154195 ACATTGAAGCAACTCGAATACCAC 59.846 41.667 0.00 0.00 0.00 4.16
116 117 4.323417 ACATTGAAGCAACTCGAATACCA 58.677 39.130 0.00 0.00 0.00 3.25
117 118 4.391830 TGACATTGAAGCAACTCGAATACC 59.608 41.667 0.00 0.00 0.00 2.73
118 119 5.530519 TGACATTGAAGCAACTCGAATAC 57.469 39.130 0.00 0.00 0.00 1.89
119 120 5.700832 ACTTGACATTGAAGCAACTCGAATA 59.299 36.000 0.00 0.00 0.00 1.75
121 122 3.876914 ACTTGACATTGAAGCAACTCGAA 59.123 39.130 0.00 0.00 0.00 3.71
122 123 3.248363 CACTTGACATTGAAGCAACTCGA 59.752 43.478 0.00 0.00 0.00 4.04
123 124 3.002656 ACACTTGACATTGAAGCAACTCG 59.997 43.478 0.00 0.00 0.00 4.18
124 125 4.531332 GACACTTGACATTGAAGCAACTC 58.469 43.478 0.00 0.00 0.00 3.01
126 127 3.002246 TCGACACTTGACATTGAAGCAAC 59.998 43.478 0.00 0.00 0.00 4.17
127 128 3.202097 TCGACACTTGACATTGAAGCAA 58.798 40.909 0.00 0.00 0.00 3.91
128 129 2.832563 TCGACACTTGACATTGAAGCA 58.167 42.857 0.00 0.00 0.00 3.91
129 130 4.398247 GAATCGACACTTGACATTGAAGC 58.602 43.478 0.00 0.00 0.00 3.86
130 131 4.452114 TGGAATCGACACTTGACATTGAAG 59.548 41.667 0.00 0.00 0.00 3.02
131 132 4.384940 TGGAATCGACACTTGACATTGAA 58.615 39.130 0.00 0.00 0.00 2.69
132 133 4.001618 TGGAATCGACACTTGACATTGA 57.998 40.909 0.00 0.00 0.00 2.57
134 135 4.876107 GGTATGGAATCGACACTTGACATT 59.124 41.667 0.00 0.00 0.00 2.71
135 136 4.162320 AGGTATGGAATCGACACTTGACAT 59.838 41.667 0.00 0.00 0.00 3.06
136 137 3.513912 AGGTATGGAATCGACACTTGACA 59.486 43.478 0.00 0.00 0.00 3.58
137 138 4.113354 GAGGTATGGAATCGACACTTGAC 58.887 47.826 0.00 0.00 0.00 3.18
138 139 3.132289 GGAGGTATGGAATCGACACTTGA 59.868 47.826 0.00 0.00 0.00 3.02
139 140 3.458189 GGAGGTATGGAATCGACACTTG 58.542 50.000 0.00 0.00 0.00 3.16
140 141 2.434702 GGGAGGTATGGAATCGACACTT 59.565 50.000 0.00 0.00 0.00 3.16
141 142 2.040178 GGGAGGTATGGAATCGACACT 58.960 52.381 0.00 0.00 0.00 3.55
142 143 1.070289 GGGGAGGTATGGAATCGACAC 59.930 57.143 0.00 0.00 0.00 3.67
143 144 1.062428 AGGGGAGGTATGGAATCGACA 60.062 52.381 0.00 0.00 0.00 4.35
144 145 1.718280 AGGGGAGGTATGGAATCGAC 58.282 55.000 0.00 0.00 0.00 4.20
145 146 3.507411 CTTAGGGGAGGTATGGAATCGA 58.493 50.000 0.00 0.00 0.00 3.59
146 147 2.028020 GCTTAGGGGAGGTATGGAATCG 60.028 54.545 0.00 0.00 0.00 3.34
147 148 2.028020 CGCTTAGGGGAGGTATGGAATC 60.028 54.545 0.00 0.00 0.00 2.52
148 149 1.978580 CGCTTAGGGGAGGTATGGAAT 59.021 52.381 0.00 0.00 0.00 3.01
149 150 1.420430 CGCTTAGGGGAGGTATGGAA 58.580 55.000 0.00 0.00 0.00 3.53
150 151 0.471211 CCGCTTAGGGGAGGTATGGA 60.471 60.000 9.98 0.00 37.91 3.41
151 152 0.763223 ACCGCTTAGGGGAGGTATGG 60.763 60.000 22.36 0.00 46.96 2.74
152 153 2.836020 ACCGCTTAGGGGAGGTATG 58.164 57.895 22.36 0.00 46.96 2.39
162 163 4.626042 AGAAATATGAGAGCACCGCTTAG 58.374 43.478 0.00 0.00 39.88 2.18
164 165 3.550437 AGAAATATGAGAGCACCGCTT 57.450 42.857 0.00 0.00 39.88 4.68
165 166 4.039730 ACATAGAAATATGAGAGCACCGCT 59.960 41.667 2.41 0.00 43.88 5.52
166 167 4.151335 CACATAGAAATATGAGAGCACCGC 59.849 45.833 2.41 0.00 0.00 5.68
167 168 4.687948 CCACATAGAAATATGAGAGCACCG 59.312 45.833 2.41 0.00 0.00 4.94
169 170 8.310382 AGTATCCACATAGAAATATGAGAGCAC 58.690 37.037 2.41 0.00 0.00 4.40
174 175 9.593134 GGCTTAGTATCCACATAGAAATATGAG 57.407 37.037 2.41 0.00 0.00 2.90
175 176 9.326489 AGGCTTAGTATCCACATAGAAATATGA 57.674 33.333 2.41 0.00 0.00 2.15
178 179 9.381038 AGAAGGCTTAGTATCCACATAGAAATA 57.619 33.333 0.00 0.00 0.00 1.40
180 181 7.676683 AGAAGGCTTAGTATCCACATAGAAA 57.323 36.000 0.00 0.00 0.00 2.52
182 183 6.839134 TCAAGAAGGCTTAGTATCCACATAGA 59.161 38.462 0.00 0.00 31.81 1.98
183 184 7.055667 TCAAGAAGGCTTAGTATCCACATAG 57.944 40.000 0.00 0.00 31.81 2.23
185 186 5.957771 TCAAGAAGGCTTAGTATCCACAT 57.042 39.130 0.00 0.00 31.81 3.21
187 188 5.918608 TGATCAAGAAGGCTTAGTATCCAC 58.081 41.667 0.00 0.00 31.81 4.02
188 189 6.517362 CGATGATCAAGAAGGCTTAGTATCCA 60.517 42.308 0.00 0.00 31.81 3.41
189 190 5.866633 CGATGATCAAGAAGGCTTAGTATCC 59.133 44.000 0.00 0.00 31.81 2.59
191 192 6.491745 TCTCGATGATCAAGAAGGCTTAGTAT 59.508 38.462 0.00 0.00 31.81 2.12
192 193 5.828328 TCTCGATGATCAAGAAGGCTTAGTA 59.172 40.000 0.00 0.00 31.81 1.82
193 194 4.646945 TCTCGATGATCAAGAAGGCTTAGT 59.353 41.667 0.00 0.00 31.81 2.24
194 195 5.193663 TCTCGATGATCAAGAAGGCTTAG 57.806 43.478 0.00 0.00 31.81 2.18
195 196 5.069648 ACATCTCGATGATCAAGAAGGCTTA 59.930 40.000 13.45 0.00 41.20 3.09
196 197 4.141756 ACATCTCGATGATCAAGAAGGCTT 60.142 41.667 13.45 0.00 41.20 4.35
198 199 3.726607 ACATCTCGATGATCAAGAAGGC 58.273 45.455 13.45 0.00 41.20 4.35
200 201 5.107414 GCATGACATCTCGATGATCAAGAAG 60.107 44.000 13.45 0.00 41.20 2.85
201 202 4.748600 GCATGACATCTCGATGATCAAGAA 59.251 41.667 13.45 0.00 41.20 2.52
202 203 4.304939 GCATGACATCTCGATGATCAAGA 58.695 43.478 13.45 0.00 41.20 3.02
203 204 3.432592 GGCATGACATCTCGATGATCAAG 59.567 47.826 13.45 10.55 41.20 3.02
204 205 3.181463 TGGCATGACATCTCGATGATCAA 60.181 43.478 13.45 0.00 41.20 2.57
205 206 2.366266 TGGCATGACATCTCGATGATCA 59.634 45.455 13.45 12.37 41.20 2.92
206 207 3.036075 TGGCATGACATCTCGATGATC 57.964 47.619 13.45 7.86 41.20 2.92
207 208 3.480505 TTGGCATGACATCTCGATGAT 57.519 42.857 0.00 0.00 41.20 2.45
209 210 3.813724 AGAATTGGCATGACATCTCGATG 59.186 43.478 0.00 5.40 44.15 3.84
210 211 4.063689 GAGAATTGGCATGACATCTCGAT 58.936 43.478 14.86 0.00 0.00 3.59
211 212 3.133542 AGAGAATTGGCATGACATCTCGA 59.866 43.478 21.24 0.00 38.60 4.04
212 213 3.464907 AGAGAATTGGCATGACATCTCG 58.535 45.455 21.24 0.00 38.60 4.04
213 214 4.275443 GGAAGAGAATTGGCATGACATCTC 59.725 45.833 20.31 20.31 34.84 2.75
215 216 3.949754 TGGAAGAGAATTGGCATGACATC 59.050 43.478 0.00 0.00 0.00 3.06
216 217 3.972133 TGGAAGAGAATTGGCATGACAT 58.028 40.909 0.00 0.00 0.00 3.06
218 219 3.119352 GGTTGGAAGAGAATTGGCATGAC 60.119 47.826 0.00 0.00 0.00 3.06
219 220 3.091545 GGTTGGAAGAGAATTGGCATGA 58.908 45.455 0.00 0.00 0.00 3.07
220 221 2.159338 CGGTTGGAAGAGAATTGGCATG 60.159 50.000 0.00 0.00 0.00 4.06
222 223 1.073125 TCGGTTGGAAGAGAATTGGCA 59.927 47.619 0.00 0.00 0.00 4.92
223 224 1.468914 GTCGGTTGGAAGAGAATTGGC 59.531 52.381 0.00 0.00 0.00 4.52
224 225 1.732259 CGTCGGTTGGAAGAGAATTGG 59.268 52.381 0.00 0.00 0.00 3.16
225 226 2.157668 CACGTCGGTTGGAAGAGAATTG 59.842 50.000 0.00 0.00 0.00 2.32
226 227 2.413837 CACGTCGGTTGGAAGAGAATT 58.586 47.619 0.00 0.00 0.00 2.17
228 229 0.599204 GCACGTCGGTTGGAAGAGAA 60.599 55.000 0.00 0.00 0.00 2.87
230 231 0.600255 AAGCACGTCGGTTGGAAGAG 60.600 55.000 0.00 0.00 32.95 2.85
231 232 0.599204 GAAGCACGTCGGTTGGAAGA 60.599 55.000 7.07 0.00 34.82 2.87
233 234 0.599204 GAGAAGCACGTCGGTTGGAA 60.599 55.000 7.07 0.00 34.82 3.53
234 235 1.006571 GAGAAGCACGTCGGTTGGA 60.007 57.895 7.07 0.00 34.82 3.53
235 236 0.600255 AAGAGAAGCACGTCGGTTGG 60.600 55.000 7.07 0.00 34.82 3.77
236 237 0.784778 GAAGAGAAGCACGTCGGTTG 59.215 55.000 7.07 0.00 34.82 3.77
237 238 0.387929 TGAAGAGAAGCACGTCGGTT 59.612 50.000 0.00 2.78 38.27 4.44
238 239 0.387929 TTGAAGAGAAGCACGTCGGT 59.612 50.000 0.00 0.00 0.00 4.69
239 240 1.063806 CTTGAAGAGAAGCACGTCGG 58.936 55.000 0.00 0.00 0.00 4.79
240 241 1.453524 CACTTGAAGAGAAGCACGTCG 59.546 52.381 0.00 0.00 0.00 5.12
243 244 2.154854 TCCACTTGAAGAGAAGCACG 57.845 50.000 0.00 0.00 0.00 5.34
244 245 3.006247 GGATCCACTTGAAGAGAAGCAC 58.994 50.000 6.95 0.00 0.00 4.40
245 246 2.354103 CGGATCCACTTGAAGAGAAGCA 60.354 50.000 13.41 0.00 0.00 3.91
246 247 2.275318 CGGATCCACTTGAAGAGAAGC 58.725 52.381 13.41 0.00 0.00 3.86
248 249 2.233922 GACCGGATCCACTTGAAGAGAA 59.766 50.000 9.46 0.00 0.00 2.87
249 250 1.825474 GACCGGATCCACTTGAAGAGA 59.175 52.381 9.46 0.00 0.00 3.10
250 251 1.550524 TGACCGGATCCACTTGAAGAG 59.449 52.381 9.46 0.00 0.00 2.85
251 252 1.639722 TGACCGGATCCACTTGAAGA 58.360 50.000 9.46 0.00 0.00 2.87
252 253 2.698855 ATGACCGGATCCACTTGAAG 57.301 50.000 9.46 0.00 0.00 3.02
253 254 3.244735 TGAAATGACCGGATCCACTTGAA 60.245 43.478 9.46 0.00 0.00 2.69
254 255 2.304470 TGAAATGACCGGATCCACTTGA 59.696 45.455 9.46 0.00 0.00 3.02
255 256 2.710377 TGAAATGACCGGATCCACTTG 58.290 47.619 9.46 0.00 0.00 3.16
256 257 3.081804 GTTGAAATGACCGGATCCACTT 58.918 45.455 9.46 0.00 0.00 3.16
257 258 2.039746 TGTTGAAATGACCGGATCCACT 59.960 45.455 9.46 0.00 0.00 4.00
258 259 2.432444 TGTTGAAATGACCGGATCCAC 58.568 47.619 9.46 3.08 0.00 4.02
262 263 2.097466 GCGAATGTTGAAATGACCGGAT 59.903 45.455 9.46 0.00 0.00 4.18
263 264 1.466950 GCGAATGTTGAAATGACCGGA 59.533 47.619 9.46 0.00 0.00 5.14
264 265 1.790123 CGCGAATGTTGAAATGACCGG 60.790 52.381 0.00 0.00 0.00 5.28
266 267 2.095969 TCACGCGAATGTTGAAATGACC 60.096 45.455 15.93 0.00 0.00 4.02
267 268 3.181826 TCACGCGAATGTTGAAATGAC 57.818 42.857 15.93 0.00 0.00 3.06
268 269 3.434984 TGATCACGCGAATGTTGAAATGA 59.565 39.130 15.93 1.30 0.00 2.57
272 273 4.154015 AGAATTGATCACGCGAATGTTGAA 59.846 37.500 15.93 0.00 0.00 2.69
273 274 3.684305 AGAATTGATCACGCGAATGTTGA 59.316 39.130 15.93 5.83 0.00 3.18
274 275 4.007282 AGAATTGATCACGCGAATGTTG 57.993 40.909 15.93 0.00 0.00 3.33
275 276 5.351465 ACTTAGAATTGATCACGCGAATGTT 59.649 36.000 15.93 0.00 0.00 2.71
277 278 5.395325 ACTTAGAATTGATCACGCGAATG 57.605 39.130 15.93 0.27 0.00 2.67
278 279 6.422776 AAACTTAGAATTGATCACGCGAAT 57.577 33.333 15.93 5.64 0.00 3.34
279 280 5.856126 AAACTTAGAATTGATCACGCGAA 57.144 34.783 15.93 0.00 0.00 4.70
280 281 5.637810 AGAAAACTTAGAATTGATCACGCGA 59.362 36.000 15.93 0.00 0.00 5.87
281 282 5.858475 AGAAAACTTAGAATTGATCACGCG 58.142 37.500 3.53 3.53 0.00 6.01
283 284 7.475565 CGTTGAGAAAACTTAGAATTGATCACG 59.524 37.037 0.00 0.00 0.00 4.35
285 286 7.444183 ACCGTTGAGAAAACTTAGAATTGATCA 59.556 33.333 0.00 0.00 0.00 2.92
286 287 7.746475 CACCGTTGAGAAAACTTAGAATTGATC 59.254 37.037 0.00 0.00 0.00 2.92
287 288 7.228706 ACACCGTTGAGAAAACTTAGAATTGAT 59.771 33.333 0.00 0.00 0.00 2.57
288 289 6.540914 ACACCGTTGAGAAAACTTAGAATTGA 59.459 34.615 0.00 0.00 0.00 2.57
289 290 6.725246 ACACCGTTGAGAAAACTTAGAATTG 58.275 36.000 0.00 0.00 0.00 2.32
292 293 6.149807 ACAAACACCGTTGAGAAAACTTAGAA 59.850 34.615 0.00 0.00 32.59 2.10
293 294 5.644636 ACAAACACCGTTGAGAAAACTTAGA 59.355 36.000 0.00 0.00 32.59 2.10
294 295 5.875930 ACAAACACCGTTGAGAAAACTTAG 58.124 37.500 0.00 0.00 32.59 2.18
295 296 5.883503 ACAAACACCGTTGAGAAAACTTA 57.116 34.783 0.00 0.00 32.59 2.24
296 297 4.776795 ACAAACACCGTTGAGAAAACTT 57.223 36.364 0.00 0.00 32.59 2.66
297 298 4.776795 AACAAACACCGTTGAGAAAACT 57.223 36.364 0.00 0.00 32.59 2.66
299 300 5.122512 TGAAACAAACACCGTTGAGAAAA 57.877 34.783 0.00 0.00 32.59 2.29
300 301 4.768130 TGAAACAAACACCGTTGAGAAA 57.232 36.364 0.00 0.00 32.59 2.52
302 303 3.314080 GGATGAAACAAACACCGTTGAGA 59.686 43.478 0.00 0.00 32.59 3.27
303 304 3.628017 GGATGAAACAAACACCGTTGAG 58.372 45.455 0.00 0.00 32.59 3.02
304 305 2.032302 CGGATGAAACAAACACCGTTGA 59.968 45.455 0.00 0.00 36.38 3.18
305 306 2.380660 CGGATGAAACAAACACCGTTG 58.619 47.619 0.00 0.00 36.38 4.10
306 307 2.766970 CGGATGAAACAAACACCGTT 57.233 45.000 0.00 0.00 36.38 4.44
308 309 1.069500 GGACGGATGAAACAAACACCG 60.069 52.381 0.00 0.00 44.77 4.94
309 310 1.268625 GGGACGGATGAAACAAACACC 59.731 52.381 0.00 0.00 0.00 4.16
310 311 1.950909 TGGGACGGATGAAACAAACAC 59.049 47.619 0.00 0.00 0.00 3.32
311 312 2.350057 TGGGACGGATGAAACAAACA 57.650 45.000 0.00 0.00 0.00 2.83
312 313 2.621526 ACTTGGGACGGATGAAACAAAC 59.378 45.455 0.00 0.00 0.00 2.93
313 314 2.938838 ACTTGGGACGGATGAAACAAA 58.061 42.857 0.00 0.00 0.00 2.83
314 315 2.621055 CAACTTGGGACGGATGAAACAA 59.379 45.455 0.00 0.00 0.00 2.83
315 316 2.226330 CAACTTGGGACGGATGAAACA 58.774 47.619 0.00 0.00 0.00 2.83
319 320 1.002624 GGCAACTTGGGACGGATGA 60.003 57.895 0.00 0.00 0.00 2.92
320 321 3.590824 GGCAACTTGGGACGGATG 58.409 61.111 0.00 0.00 0.00 3.51
332 333 1.497991 GCGGGAAAAAGAAAGGCAAC 58.502 50.000 0.00 0.00 0.00 4.17
333 334 0.391228 GGCGGGAAAAAGAAAGGCAA 59.609 50.000 0.00 0.00 0.00 4.52
334 335 1.468506 GGGCGGGAAAAAGAAAGGCA 61.469 55.000 0.00 0.00 0.00 4.75
335 336 1.185618 AGGGCGGGAAAAAGAAAGGC 61.186 55.000 0.00 0.00 0.00 4.35
336 337 0.888619 GAGGGCGGGAAAAAGAAAGG 59.111 55.000 0.00 0.00 0.00 3.11
337 338 0.888619 GGAGGGCGGGAAAAAGAAAG 59.111 55.000 0.00 0.00 0.00 2.62
339 340 1.076014 GGGAGGGCGGGAAAAAGAA 59.924 57.895 0.00 0.00 0.00 2.52
340 341 2.157452 TGGGAGGGCGGGAAAAAGA 61.157 57.895 0.00 0.00 0.00 2.52
343 344 3.974293 GGTGGGAGGGCGGGAAAA 61.974 66.667 0.00 0.00 0.00 2.29
350 351 0.178932 AAGAAAAAGGGTGGGAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
351 352 1.146982 TGAAGAAAAAGGGTGGGAGGG 59.853 52.381 0.00 0.00 0.00 4.30
353 354 2.519013 CCTGAAGAAAAAGGGTGGGAG 58.481 52.381 0.00 0.00 0.00 4.30
354 355 2.675658 CCTGAAGAAAAAGGGTGGGA 57.324 50.000 0.00 0.00 0.00 4.37
360 361 7.613411 AGAAATATGAGTCCCTGAAGAAAAAGG 59.387 37.037 0.00 0.00 0.00 3.11
361 362 8.572855 AGAAATATGAGTCCCTGAAGAAAAAG 57.427 34.615 0.00 0.00 0.00 2.27
362 363 8.940397 AAGAAATATGAGTCCCTGAAGAAAAA 57.060 30.769 0.00 0.00 0.00 1.94
365 366 9.838339 GATTAAGAAATATGAGTCCCTGAAGAA 57.162 33.333 0.00 0.00 0.00 2.52
366 367 8.992349 TGATTAAGAAATATGAGTCCCTGAAGA 58.008 33.333 0.00 0.00 0.00 2.87
367 368 9.618890 TTGATTAAGAAATATGAGTCCCTGAAG 57.381 33.333 0.00 0.00 0.00 3.02
368 369 9.618890 CTTGATTAAGAAATATGAGTCCCTGAA 57.381 33.333 0.00 0.00 35.92 3.02
370 371 8.970859 ACTTGATTAAGAAATATGAGTCCCTG 57.029 34.615 3.94 0.00 37.36 4.45
390 391 9.699410 ACTTCCCATCAATAAAATGATACTTGA 57.301 29.630 0.00 0.00 37.96 3.02
391 392 9.956720 GACTTCCCATCAATAAAATGATACTTG 57.043 33.333 0.00 0.00 37.96 3.16
392 393 9.927081 AGACTTCCCATCAATAAAATGATACTT 57.073 29.630 0.00 0.00 37.96 2.24
394 395 9.566432 AGAGACTTCCCATCAATAAAATGATAC 57.434 33.333 0.00 0.00 37.96 2.24
395 396 9.784531 GAGAGACTTCCCATCAATAAAATGATA 57.215 33.333 0.00 0.00 37.96 2.15
396 397 7.723172 GGAGAGACTTCCCATCAATAAAATGAT 59.277 37.037 0.00 0.00 40.64 2.45
398 399 6.830324 TGGAGAGACTTCCCATCAATAAAATG 59.170 38.462 0.00 0.00 36.35 2.32
399 400 6.973642 TGGAGAGACTTCCCATCAATAAAAT 58.026 36.000 0.00 0.00 36.35 1.82
400 401 6.387192 TGGAGAGACTTCCCATCAATAAAA 57.613 37.500 0.00 0.00 36.35 1.52
404 405 4.229123 ACAATGGAGAGACTTCCCATCAAT 59.771 41.667 9.23 0.00 39.58 2.57
406 407 3.184628 ACAATGGAGAGACTTCCCATCA 58.815 45.455 9.23 0.00 39.58 3.07
408 409 4.664688 AAACAATGGAGAGACTTCCCAT 57.335 40.909 4.30 4.30 42.08 4.00
410 411 3.759086 GGAAAACAATGGAGAGACTTCCC 59.241 47.826 0.00 0.00 36.35 3.97
411 412 3.437049 CGGAAAACAATGGAGAGACTTCC 59.563 47.826 0.00 0.00 37.77 3.46
412 413 4.315803 TCGGAAAACAATGGAGAGACTTC 58.684 43.478 0.00 0.00 0.00 3.01
413 414 4.351874 TCGGAAAACAATGGAGAGACTT 57.648 40.909 0.00 0.00 0.00 3.01
414 415 4.256920 CATCGGAAAACAATGGAGAGACT 58.743 43.478 0.00 0.00 0.00 3.24
415 416 3.181506 GCATCGGAAAACAATGGAGAGAC 60.182 47.826 0.00 0.00 0.00 3.36
416 417 3.009723 GCATCGGAAAACAATGGAGAGA 58.990 45.455 0.00 0.00 0.00 3.10
417 418 2.749076 TGCATCGGAAAACAATGGAGAG 59.251 45.455 0.00 0.00 0.00 3.20
419 420 2.228582 TGTGCATCGGAAAACAATGGAG 59.771 45.455 0.00 0.00 0.00 3.86
421 422 2.288091 TGTGTGCATCGGAAAACAATGG 60.288 45.455 0.00 0.00 0.00 3.16
422 423 3.010624 TGTGTGCATCGGAAAACAATG 57.989 42.857 0.00 0.00 0.00 2.82
423 424 3.181482 TGTTGTGTGCATCGGAAAACAAT 60.181 39.130 0.00 0.00 30.96 2.71
425 426 1.745653 TGTTGTGTGCATCGGAAAACA 59.254 42.857 0.00 0.00 0.00 2.83
426 427 2.483583 TGTTGTGTGCATCGGAAAAC 57.516 45.000 0.00 0.00 0.00 2.43
427 428 2.425312 ACTTGTTGTGTGCATCGGAAAA 59.575 40.909 0.00 0.00 0.00 2.29
430 431 2.036604 TCTACTTGTTGTGTGCATCGGA 59.963 45.455 0.00 0.00 0.00 4.55
431 432 2.412870 TCTACTTGTTGTGTGCATCGG 58.587 47.619 0.00 0.00 0.00 4.18
432 433 2.159787 GCTCTACTTGTTGTGTGCATCG 60.160 50.000 0.00 0.00 0.00 3.84
433 434 2.159787 CGCTCTACTTGTTGTGTGCATC 60.160 50.000 0.00 0.00 0.00 3.91
434 435 1.800586 CGCTCTACTTGTTGTGTGCAT 59.199 47.619 0.00 0.00 0.00 3.96
435 436 1.202475 TCGCTCTACTTGTTGTGTGCA 60.202 47.619 0.00 0.00 0.00 4.57
436 437 1.192534 GTCGCTCTACTTGTTGTGTGC 59.807 52.381 0.00 0.00 0.00 4.57
437 438 1.792949 GGTCGCTCTACTTGTTGTGTG 59.207 52.381 0.00 0.00 0.00 3.82
519 535 6.073167 TGTGTCTGTGTTTTTCGTTTAACTGA 60.073 34.615 0.00 0.00 0.00 3.41
782 800 1.895131 GTGGCCCATTCATGTTTGTCT 59.105 47.619 0.00 0.00 0.00 3.41
2351 2793 5.538433 ACTTAGCATACAAACCAAACCATGT 59.462 36.000 0.00 0.00 0.00 3.21
2388 2832 1.133407 ACTCAAGATCGCGTCTTCTCC 59.867 52.381 17.27 0.00 45.35 3.71
2480 2932 0.755327 AAAGCAAAGAACACCGCCCT 60.755 50.000 0.00 0.00 0.00 5.19
2938 4975 2.224769 TGCTTGAACCCTAAACCCAGAG 60.225 50.000 0.00 0.00 0.00 3.35
3205 5256 0.250727 TAACAGGTGCTGCTGTTCCC 60.251 55.000 8.75 0.00 42.08 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.