Multiple sequence alignment - TraesCS5D01G563400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G563400 chr5D 100.000 2124 0 0 1 2124 562432781 562430658 0.000000e+00 3923
1 TraesCS5D01G563400 chr5D 92.906 1311 71 12 827 2115 562488441 562487131 0.000000e+00 1886
2 TraesCS5D01G563400 chr5D 92.906 1311 71 12 827 2115 562531286 562529976 0.000000e+00 1886
3 TraesCS5D01G563400 chr5D 100.000 738 0 0 2376 3113 562430406 562429669 0.000000e+00 1363
4 TraesCS5D01G563400 chr5D 85.714 1267 139 20 862 2106 561804277 561803031 0.000000e+00 1299
5 TraesCS5D01G563400 chr5D 96.280 457 16 1 1 456 390366360 390366816 0.000000e+00 749
6 TraesCS5D01G563400 chr5D 90.909 88 6 2 692 778 562531453 562531367 1.960000e-22 117
7 TraesCS5D01G563400 chr5D 89.773 88 7 2 692 778 562488608 562488522 9.130000e-21 111
8 TraesCS5D01G563400 chr7B 95.130 1499 62 6 625 2112 222028 223526 0.000000e+00 2353
9 TraesCS5D01G563400 chr7B 91.648 1317 85 13 824 2115 128344 129660 0.000000e+00 1799
10 TraesCS5D01G563400 chr7B 85.556 1267 140 20 868 2108 1154063 1155312 0.000000e+00 1286
11 TraesCS5D01G563400 chr7B 85.432 1263 142 16 868 2108 1020437 1021679 0.000000e+00 1275
12 TraesCS5D01G563400 chr7B 84.480 1192 153 22 938 2113 229022 230197 0.000000e+00 1147
13 TraesCS5D01G563400 chr7B 89.212 482 27 11 2376 2849 223861 224325 2.080000e-161 579
14 TraesCS5D01G563400 chr7B 91.919 297 24 0 2817 3113 224344 224640 1.730000e-112 416
15 TraesCS5D01G563400 chr7B 87.387 111 6 5 692 801 128155 128258 1.520000e-23 121
16 TraesCS5D01G563400 chr5B 94.167 1303 50 8 827 2124 712890396 712889115 0.000000e+00 1962
17 TraesCS5D01G563400 chr5B 84.972 1271 144 24 873 2114 711715644 711714392 0.000000e+00 1245
18 TraesCS5D01G563400 chr5B 92.271 414 26 3 2706 3113 712884393 712883980 1.610000e-162 582
19 TraesCS5D01G563400 chr5B 94.975 199 6 1 2376 2570 712889082 712888884 3.020000e-80 309
20 TraesCS5D01G563400 chr5B 86.614 127 7 3 2574 2699 712888544 712888427 7.000000e-27 132
21 TraesCS5D01G563400 chr6D 96.937 457 13 1 1 456 147646941 147646485 0.000000e+00 765
22 TraesCS5D01G563400 chr2D 96.272 456 13 4 1 456 160320092 160319641 0.000000e+00 745
23 TraesCS5D01G563400 chr1D 95.879 461 17 2 1 461 452239581 452240039 0.000000e+00 745
24 TraesCS5D01G563400 chr7D 96.070 458 14 4 1 456 505611626 505612081 0.000000e+00 743
25 TraesCS5D01G563400 chr3D 95.879 461 15 4 1 457 513611690 513612150 0.000000e+00 743
26 TraesCS5D01G563400 chr3D 95.690 464 15 5 1 464 369418373 369418831 0.000000e+00 741
27 TraesCS5D01G563400 chr3D 95.662 461 18 2 2 461 535498767 535498308 0.000000e+00 739
28 TraesCS5D01G563400 chr3D 95.464 463 19 2 1 463 339837455 339836995 0.000000e+00 737


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G563400 chr5D 562429669 562432781 3112 True 2643.0 3923 100.000000 1 3113 2 chr5D.!!$R2 3112
1 TraesCS5D01G563400 chr5D 561803031 561804277 1246 True 1299.0 1299 85.714000 862 2106 1 chr5D.!!$R1 1244
2 TraesCS5D01G563400 chr5D 562529976 562531453 1477 True 1001.5 1886 91.907500 692 2115 2 chr5D.!!$R4 1423
3 TraesCS5D01G563400 chr5D 562487131 562488608 1477 True 998.5 1886 91.339500 692 2115 2 chr5D.!!$R3 1423
4 TraesCS5D01G563400 chr7B 1154063 1155312 1249 False 1286.0 1286 85.556000 868 2108 1 chr7B.!!$F3 1240
5 TraesCS5D01G563400 chr7B 1020437 1021679 1242 False 1275.0 1275 85.432000 868 2108 1 chr7B.!!$F2 1240
6 TraesCS5D01G563400 chr7B 229022 230197 1175 False 1147.0 1147 84.480000 938 2113 1 chr7B.!!$F1 1175
7 TraesCS5D01G563400 chr7B 222028 224640 2612 False 1116.0 2353 92.087000 625 3113 3 chr7B.!!$F5 2488
8 TraesCS5D01G563400 chr7B 128155 129660 1505 False 960.0 1799 89.517500 692 2115 2 chr7B.!!$F4 1423
9 TraesCS5D01G563400 chr5B 711714392 711715644 1252 True 1245.0 1245 84.972000 873 2114 1 chr5B.!!$R1 1241
10 TraesCS5D01G563400 chr5B 712888427 712890396 1969 True 801.0 1962 91.918667 827 2699 3 chr5B.!!$R3 1872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.0 27.71 14.21 41.66 4.20 F
606 607 0.036577 AGACATGTGCTCTGGACAGC 60.037 55.0 1.15 0.00 40.13 4.40 F
615 616 0.247460 CTCTGGACAGCCACAATCGA 59.753 55.0 0.00 0.00 39.92 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1300 1382 0.463620 GAGCCAAGATCGAGCTCCTT 59.536 55.000 18.46 2.82 45.83 3.36 R
1692 1774 1.904287 TGTTAGCGAAAACCATGCCT 58.096 45.000 0.00 0.00 0.00 4.75 R
2399 2579 2.512896 AGCCTCAACATCATCCCATCTT 59.487 45.455 0.00 0.00 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.637714 GGTTGTGCTTTCGCGAGA 58.362 55.556 9.59 3.35 39.65 4.04
18 19 1.493311 GGTTGTGCTTTCGCGAGAG 59.507 57.895 21.42 21.42 43.69 3.20
19 20 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
20 21 0.161870 GTTGTGCTTTCGCGAGAGTC 59.838 55.000 25.34 18.16 43.69 3.36
21 22 0.249280 TTGTGCTTTCGCGAGAGTCA 60.249 50.000 25.34 20.22 43.69 3.41
22 23 0.939577 TGTGCTTTCGCGAGAGTCAC 60.940 55.000 29.56 29.56 43.69 3.67
23 24 1.372997 TGCTTTCGCGAGAGTCACC 60.373 57.895 25.34 11.07 43.69 4.02
24 25 2.437343 GCTTTCGCGAGAGTCACCG 61.437 63.158 25.34 2.90 43.69 4.94
25 26 1.801913 CTTTCGCGAGAGTCACCGG 60.802 63.158 17.92 0.00 43.69 5.28
26 27 3.909258 TTTCGCGAGAGTCACCGGC 62.909 63.158 9.59 0.00 43.69 6.13
35 36 4.681978 GTCACCGGCGTGCCTCTT 62.682 66.667 9.55 0.00 40.04 2.85
36 37 3.936203 TCACCGGCGTGCCTCTTT 61.936 61.111 9.55 0.00 40.04 2.52
37 38 2.978010 CACCGGCGTGCCTCTTTT 60.978 61.111 9.55 0.00 32.04 2.27
38 39 2.978010 ACCGGCGTGCCTCTTTTG 60.978 61.111 9.55 0.00 0.00 2.44
39 40 3.737172 CCGGCGTGCCTCTTTTGG 61.737 66.667 9.55 0.00 0.00 3.28
40 41 2.668212 CGGCGTGCCTCTTTTGGA 60.668 61.111 9.55 0.00 0.00 3.53
41 42 2.258013 CGGCGTGCCTCTTTTGGAA 61.258 57.895 9.55 0.00 0.00 3.53
42 43 1.791103 CGGCGTGCCTCTTTTGGAAA 61.791 55.000 9.55 0.00 0.00 3.13
43 44 0.039165 GGCGTGCCTCTTTTGGAAAG 60.039 55.000 2.98 0.00 0.00 2.62
44 45 0.039165 GCGTGCCTCTTTTGGAAAGG 60.039 55.000 1.04 0.00 0.00 3.11
45 46 0.598065 CGTGCCTCTTTTGGAAAGGG 59.402 55.000 1.04 0.00 0.00 3.95
46 47 1.817740 CGTGCCTCTTTTGGAAAGGGA 60.818 52.381 1.96 0.00 0.00 4.20
47 48 2.316108 GTGCCTCTTTTGGAAAGGGAA 58.684 47.619 1.96 0.00 31.86 3.97
48 49 2.698274 GTGCCTCTTTTGGAAAGGGAAA 59.302 45.455 1.96 0.00 31.86 3.13
49 50 3.133901 GTGCCTCTTTTGGAAAGGGAAAA 59.866 43.478 1.96 0.00 31.86 2.29
50 51 3.777522 TGCCTCTTTTGGAAAGGGAAAAA 59.222 39.130 1.96 0.00 0.00 1.94
95 96 2.601562 ACGAGAGTCACGGTTTTGC 58.398 52.632 14.49 0.00 44.19 3.68
96 97 0.104304 ACGAGAGTCACGGTTTTGCT 59.896 50.000 14.49 0.00 44.19 3.91
97 98 1.217882 CGAGAGTCACGGTTTTGCTT 58.782 50.000 1.62 0.00 0.00 3.91
98 99 1.192534 CGAGAGTCACGGTTTTGCTTC 59.807 52.381 1.62 0.00 0.00 3.86
99 100 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
100 101 1.134220 AGAGTCACGGTTTTGCTTCCA 60.134 47.619 0.00 0.00 0.00 3.53
101 102 1.002792 GAGTCACGGTTTTGCTTCCAC 60.003 52.381 0.00 0.00 0.00 4.02
102 103 0.316689 GTCACGGTTTTGCTTCCACG 60.317 55.000 0.00 0.00 0.00 4.94
103 104 0.462225 TCACGGTTTTGCTTCCACGA 60.462 50.000 0.00 0.00 0.00 4.35
104 105 0.041312 CACGGTTTTGCTTCCACGAG 60.041 55.000 0.00 0.00 0.00 4.18
105 106 0.179067 ACGGTTTTGCTTCCACGAGA 60.179 50.000 0.00 0.00 0.00 4.04
106 107 0.512952 CGGTTTTGCTTCCACGAGAG 59.487 55.000 0.00 0.00 0.00 3.20
107 108 0.875059 GGTTTTGCTTCCACGAGAGG 59.125 55.000 0.00 0.00 0.00 3.69
111 112 2.811317 GCTTCCACGAGAGGCACG 60.811 66.667 8.88 0.00 46.54 5.34
112 113 2.125912 CTTCCACGAGAGGCACGG 60.126 66.667 0.00 0.00 34.93 4.94
113 114 2.915659 TTCCACGAGAGGCACGGT 60.916 61.111 0.00 0.00 34.93 4.83
114 115 2.436087 CTTCCACGAGAGGCACGGTT 62.436 60.000 0.00 0.00 34.93 4.44
115 116 2.709125 TTCCACGAGAGGCACGGTTG 62.709 60.000 0.00 0.00 34.93 3.77
116 117 2.029073 CACGAGAGGCACGGTTGT 59.971 61.111 0.00 0.00 34.93 3.32
126 127 4.347096 ACGGTTGTGATTTCGCGA 57.653 50.000 3.71 3.71 0.00 5.87
127 128 2.150424 ACGGTTGTGATTTCGCGAG 58.850 52.632 9.59 0.00 0.00 5.03
128 129 0.319211 ACGGTTGTGATTTCGCGAGA 60.319 50.000 9.59 4.97 39.20 4.04
129 130 0.366871 CGGTTGTGATTTCGCGAGAG 59.633 55.000 9.59 0.00 43.69 3.20
130 131 0.721718 GGTTGTGATTTCGCGAGAGG 59.278 55.000 9.59 0.00 43.69 3.69
131 132 0.095417 GTTGTGATTTCGCGAGAGGC 59.905 55.000 9.59 1.86 43.69 4.70
132 133 0.320334 TTGTGATTTCGCGAGAGGCA 60.320 50.000 9.59 4.82 43.84 4.75
133 134 1.014044 TGTGATTTCGCGAGAGGCAC 61.014 55.000 21.07 21.07 43.84 5.01
134 135 1.805539 TGATTTCGCGAGAGGCACG 60.806 57.895 9.59 0.00 43.84 5.34
135 136 2.509336 ATTTCGCGAGAGGCACGG 60.509 61.111 9.59 0.00 43.84 4.94
136 137 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
148 149 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
151 152 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
152 153 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
153 154 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
154 155 1.497722 GCGTGCCTCTTTCGGAAAG 59.502 57.895 21.64 21.64 39.88 2.62
155 156 1.912371 GCGTGCCTCTTTCGGAAAGG 61.912 60.000 25.66 15.57 39.01 3.11
156 157 1.298859 CGTGCCTCTTTCGGAAAGGG 61.299 60.000 25.66 23.41 38.75 3.95
157 158 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
158 159 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
159 160 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
160 161 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
161 162 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
180 181 4.636435 CCGTGCTCCCGGTTTGGT 62.636 66.667 0.00 0.00 43.07 3.67
181 182 2.593436 CGTGCTCCCGGTTTGGTT 60.593 61.111 0.00 0.00 35.15 3.67
182 183 2.190841 CGTGCTCCCGGTTTGGTTT 61.191 57.895 0.00 0.00 35.15 3.27
183 184 1.730451 CGTGCTCCCGGTTTGGTTTT 61.730 55.000 0.00 0.00 35.15 2.43
184 185 0.462375 GTGCTCCCGGTTTGGTTTTT 59.538 50.000 0.00 0.00 35.15 1.94
231 232 7.980742 AAAAAGTTCGTCAAAACCTATCAAC 57.019 32.000 0.00 0.00 0.00 3.18
232 233 6.687081 AAAGTTCGTCAAAACCTATCAACA 57.313 33.333 0.00 0.00 0.00 3.33
233 234 6.877611 AAGTTCGTCAAAACCTATCAACAT 57.122 33.333 0.00 0.00 0.00 2.71
234 235 6.241207 AGTTCGTCAAAACCTATCAACATG 57.759 37.500 0.00 0.00 0.00 3.21
235 236 5.181245 AGTTCGTCAAAACCTATCAACATGG 59.819 40.000 0.00 0.00 0.00 3.66
236 237 4.006989 TCGTCAAAACCTATCAACATGGG 58.993 43.478 0.00 0.00 36.68 4.00
237 238 4.006989 CGTCAAAACCTATCAACATGGGA 58.993 43.478 0.00 0.00 34.16 4.37
238 239 4.640201 CGTCAAAACCTATCAACATGGGAT 59.360 41.667 0.00 2.37 34.16 3.85
239 240 5.220854 CGTCAAAACCTATCAACATGGGATC 60.221 44.000 5.52 0.00 34.16 3.36
240 241 5.888161 GTCAAAACCTATCAACATGGGATCT 59.112 40.000 5.52 0.00 34.16 2.75
241 242 7.054124 GTCAAAACCTATCAACATGGGATCTA 58.946 38.462 5.52 0.00 34.16 1.98
242 243 7.227512 GTCAAAACCTATCAACATGGGATCTAG 59.772 40.741 5.52 0.40 34.16 2.43
243 244 6.831664 AAACCTATCAACATGGGATCTAGT 57.168 37.500 5.52 0.98 34.16 2.57
244 245 6.831664 AACCTATCAACATGGGATCTAGTT 57.168 37.500 5.52 5.97 34.16 2.24
245 246 6.831664 ACCTATCAACATGGGATCTAGTTT 57.168 37.500 5.52 0.00 34.16 2.66
246 247 7.213178 ACCTATCAACATGGGATCTAGTTTT 57.787 36.000 5.52 0.00 34.16 2.43
247 248 7.056635 ACCTATCAACATGGGATCTAGTTTTG 58.943 38.462 5.52 0.00 34.16 2.44
248 249 7.092444 ACCTATCAACATGGGATCTAGTTTTGA 60.092 37.037 5.52 0.00 34.16 2.69
249 250 7.775093 CCTATCAACATGGGATCTAGTTTTGAA 59.225 37.037 5.52 0.00 32.06 2.69
250 251 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
251 252 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
252 253 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
253 254 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
254 255 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
255 256 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
256 257 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
257 258 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
258 259 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
259 260 5.683743 GGATCTAGTTTTGAAGATCTCGACG 59.316 44.000 11.05 0.00 37.77 5.12
260 261 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
261 262 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
262 263 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
271 272 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
272 273 1.813859 TCGACGCGAGGAATCCAAT 59.186 52.632 15.93 0.00 0.00 3.16
273 274 0.527600 TCGACGCGAGGAATCCAATG 60.528 55.000 15.93 0.00 0.00 2.82
274 275 0.527600 CGACGCGAGGAATCCAATGA 60.528 55.000 15.93 0.00 0.00 2.57
275 276 1.869754 CGACGCGAGGAATCCAATGAT 60.870 52.381 15.93 0.00 0.00 2.45
276 277 1.528586 GACGCGAGGAATCCAATGATG 59.471 52.381 15.93 0.00 0.00 3.07
277 278 1.138859 ACGCGAGGAATCCAATGATGA 59.861 47.619 15.93 0.00 0.00 2.92
278 279 2.212652 CGCGAGGAATCCAATGATGAA 58.787 47.619 0.00 0.00 0.00 2.57
279 280 2.613595 CGCGAGGAATCCAATGATGAAA 59.386 45.455 0.00 0.00 0.00 2.69
280 281 3.065233 CGCGAGGAATCCAATGATGAAAA 59.935 43.478 0.00 0.00 0.00 2.29
281 282 4.354587 GCGAGGAATCCAATGATGAAAAC 58.645 43.478 0.61 0.00 0.00 2.43
282 283 4.142403 GCGAGGAATCCAATGATGAAAACA 60.142 41.667 0.61 0.00 0.00 2.83
283 284 5.575957 CGAGGAATCCAATGATGAAAACAG 58.424 41.667 0.61 0.00 0.00 3.16
284 285 5.124457 CGAGGAATCCAATGATGAAAACAGT 59.876 40.000 0.61 0.00 0.00 3.55
285 286 6.349611 CGAGGAATCCAATGATGAAAACAGTT 60.350 38.462 0.61 0.00 0.00 3.16
286 287 7.307131 AGGAATCCAATGATGAAAACAGTTT 57.693 32.000 0.61 0.00 0.00 2.66
287 288 7.156673 AGGAATCCAATGATGAAAACAGTTTG 58.843 34.615 0.61 0.00 0.00 2.93
288 289 7.015487 AGGAATCCAATGATGAAAACAGTTTGA 59.985 33.333 0.61 0.00 0.00 2.69
289 290 7.330208 GGAATCCAATGATGAAAACAGTTTGAG 59.670 37.037 0.00 0.00 0.00 3.02
290 291 6.957920 TCCAATGATGAAAACAGTTTGAGA 57.042 33.333 0.00 0.00 0.00 3.27
291 292 7.528996 TCCAATGATGAAAACAGTTTGAGAT 57.471 32.000 0.00 0.00 0.00 2.75
292 293 7.954835 TCCAATGATGAAAACAGTTTGAGATT 58.045 30.769 0.00 0.00 0.00 2.40
293 294 8.423349 TCCAATGATGAAAACAGTTTGAGATTT 58.577 29.630 0.00 0.00 0.00 2.17
294 295 8.492748 CCAATGATGAAAACAGTTTGAGATTTG 58.507 33.333 0.00 1.04 0.00 2.32
295 296 8.492748 CAATGATGAAAACAGTTTGAGATTTGG 58.507 33.333 0.00 0.00 0.00 3.28
296 297 7.345422 TGATGAAAACAGTTTGAGATTTGGA 57.655 32.000 0.00 0.00 0.00 3.53
297 298 7.954835 TGATGAAAACAGTTTGAGATTTGGAT 58.045 30.769 0.00 0.00 0.00 3.41
298 299 7.868922 TGATGAAAACAGTTTGAGATTTGGATG 59.131 33.333 0.00 0.00 0.00 3.51
299 300 5.984926 TGAAAACAGTTTGAGATTTGGATGC 59.015 36.000 0.00 0.00 0.00 3.91
300 301 5.534207 AAACAGTTTGAGATTTGGATGCA 57.466 34.783 0.00 0.00 0.00 3.96
301 302 4.510038 ACAGTTTGAGATTTGGATGCAC 57.490 40.909 0.00 0.00 0.00 4.57
302 303 3.058016 ACAGTTTGAGATTTGGATGCACG 60.058 43.478 0.00 0.00 0.00 5.34
303 304 2.489329 AGTTTGAGATTTGGATGCACGG 59.511 45.455 0.00 0.00 0.00 4.94
304 305 2.198827 TTGAGATTTGGATGCACGGT 57.801 45.000 0.00 0.00 0.00 4.83
305 306 2.198827 TGAGATTTGGATGCACGGTT 57.801 45.000 0.00 0.00 0.00 4.44
306 307 2.513753 TGAGATTTGGATGCACGGTTT 58.486 42.857 0.00 0.00 0.00 3.27
307 308 3.680490 TGAGATTTGGATGCACGGTTTA 58.320 40.909 0.00 0.00 0.00 2.01
308 309 4.075682 TGAGATTTGGATGCACGGTTTAA 58.924 39.130 0.00 0.00 0.00 1.52
309 310 4.155826 TGAGATTTGGATGCACGGTTTAAG 59.844 41.667 0.00 0.00 0.00 1.85
310 311 4.331968 AGATTTGGATGCACGGTTTAAGA 58.668 39.130 0.00 0.00 0.00 2.10
311 312 4.396166 AGATTTGGATGCACGGTTTAAGAG 59.604 41.667 0.00 0.00 0.00 2.85
312 313 3.410631 TTGGATGCACGGTTTAAGAGA 57.589 42.857 0.00 0.00 0.00 3.10
313 314 3.627395 TGGATGCACGGTTTAAGAGAT 57.373 42.857 0.00 0.00 0.00 2.75
314 315 4.746535 TGGATGCACGGTTTAAGAGATA 57.253 40.909 0.00 0.00 0.00 1.98
315 316 5.092554 TGGATGCACGGTTTAAGAGATAA 57.907 39.130 0.00 0.00 0.00 1.75
316 317 5.492895 TGGATGCACGGTTTAAGAGATAAA 58.507 37.500 0.00 0.00 0.00 1.40
317 318 5.941058 TGGATGCACGGTTTAAGAGATAAAA 59.059 36.000 0.00 0.00 35.33 1.52
318 319 6.128117 TGGATGCACGGTTTAAGAGATAAAAC 60.128 38.462 0.00 0.00 37.75 2.43
364 365 4.687901 AAAATGGAAAACTCCCAGGTTG 57.312 40.909 0.00 0.00 37.08 3.77
365 366 1.632589 ATGGAAAACTCCCAGGTTGC 58.367 50.000 0.00 0.00 37.08 4.17
366 367 0.821711 TGGAAAACTCCCAGGTTGCG 60.822 55.000 0.00 0.00 0.00 4.85
367 368 0.536460 GGAAAACTCCCAGGTTGCGA 60.536 55.000 0.00 0.00 0.00 5.10
368 369 0.591659 GAAAACTCCCAGGTTGCGAC 59.408 55.000 0.00 0.00 0.00 5.19
369 370 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.000 6.39 0.00 0.00 4.35
370 371 0.106918 AAACTCCCAGGTTGCGACAA 60.107 50.000 6.39 0.00 0.00 3.18
371 372 0.535102 AACTCCCAGGTTGCGACAAG 60.535 55.000 6.39 0.00 0.00 3.16
372 373 1.071471 CTCCCAGGTTGCGACAAGT 59.929 57.895 6.39 0.00 0.00 3.16
373 374 1.227823 TCCCAGGTTGCGACAAGTG 60.228 57.895 6.39 0.00 0.00 3.16
374 375 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
375 376 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
395 396 4.047059 GCTGCATGTGCGCCACTT 62.047 61.111 4.18 0.00 45.83 3.16
396 397 2.126618 CTGCATGTGCGCCACTTG 60.127 61.111 4.18 12.50 45.83 3.16
397 398 2.906388 TGCATGTGCGCCACTTGT 60.906 55.556 4.18 0.00 45.83 3.16
398 399 2.126734 GCATGTGCGCCACTTGTC 60.127 61.111 4.18 5.08 40.25 3.18
399 400 2.174107 CATGTGCGCCACTTGTCG 59.826 61.111 4.18 0.00 35.64 4.35
400 401 2.280797 ATGTGCGCCACTTGTCGT 60.281 55.556 4.18 0.00 35.11 4.34
401 402 2.606961 ATGTGCGCCACTTGTCGTG 61.607 57.895 4.18 0.00 43.41 4.35
402 403 2.964925 GTGCGCCACTTGTCGTGA 60.965 61.111 4.18 0.00 46.81 4.35
403 404 2.964925 TGCGCCACTTGTCGTGAC 60.965 61.111 4.18 0.00 46.81 3.67
404 405 3.712881 GCGCCACTTGTCGTGACC 61.713 66.667 0.00 0.00 46.81 4.02
405 406 2.029073 CGCCACTTGTCGTGACCT 59.971 61.111 0.00 0.00 46.81 3.85
406 407 2.310233 CGCCACTTGTCGTGACCTG 61.310 63.158 0.00 0.00 46.81 4.00
407 408 1.961277 GCCACTTGTCGTGACCTGG 60.961 63.158 0.00 0.00 46.81 4.45
408 409 1.301716 CCACTTGTCGTGACCTGGG 60.302 63.158 0.00 0.00 46.81 4.45
409 410 1.745890 CACTTGTCGTGACCTGGGA 59.254 57.895 0.00 0.00 46.81 4.37
410 411 0.105964 CACTTGTCGTGACCTGGGAA 59.894 55.000 0.00 0.00 46.81 3.97
411 412 0.393077 ACTTGTCGTGACCTGGGAAG 59.607 55.000 0.00 0.00 0.00 3.46
412 413 0.679505 CTTGTCGTGACCTGGGAAGA 59.320 55.000 0.00 0.00 0.00 2.87
413 414 1.276421 CTTGTCGTGACCTGGGAAGAT 59.724 52.381 0.00 0.00 0.00 2.40
414 415 0.608130 TGTCGTGACCTGGGAAGATG 59.392 55.000 0.00 0.00 0.00 2.90
415 416 0.108138 GTCGTGACCTGGGAAGATGG 60.108 60.000 0.00 0.00 0.00 3.51
416 417 0.252057 TCGTGACCTGGGAAGATGGA 60.252 55.000 0.00 0.00 0.00 3.41
417 418 0.176680 CGTGACCTGGGAAGATGGAG 59.823 60.000 0.00 0.00 0.00 3.86
418 419 1.280457 GTGACCTGGGAAGATGGAGT 58.720 55.000 0.00 0.00 0.00 3.85
419 420 1.065854 GTGACCTGGGAAGATGGAGTG 60.066 57.143 0.00 0.00 0.00 3.51
420 421 1.280457 GACCTGGGAAGATGGAGTGT 58.720 55.000 0.00 0.00 0.00 3.55
421 422 1.630878 GACCTGGGAAGATGGAGTGTT 59.369 52.381 0.00 0.00 0.00 3.32
422 423 1.630878 ACCTGGGAAGATGGAGTGTTC 59.369 52.381 0.00 0.00 0.00 3.18
423 424 1.912043 CCTGGGAAGATGGAGTGTTCT 59.088 52.381 0.00 0.00 31.12 3.01
424 425 2.307098 CCTGGGAAGATGGAGTGTTCTT 59.693 50.000 0.00 0.00 34.95 2.52
425 426 3.245052 CCTGGGAAGATGGAGTGTTCTTT 60.245 47.826 0.00 0.00 32.46 2.52
426 427 3.754965 TGGGAAGATGGAGTGTTCTTTG 58.245 45.455 0.00 0.00 32.46 2.77
427 428 2.489722 GGGAAGATGGAGTGTTCTTTGC 59.510 50.000 0.00 0.00 32.46 3.68
428 429 3.149196 GGAAGATGGAGTGTTCTTTGCA 58.851 45.455 0.00 0.00 32.46 4.08
429 430 3.569701 GGAAGATGGAGTGTTCTTTGCAA 59.430 43.478 0.00 0.00 32.46 4.08
430 431 4.540824 GAAGATGGAGTGTTCTTTGCAAC 58.459 43.478 0.00 0.00 32.46 4.17
431 432 2.549754 AGATGGAGTGTTCTTTGCAACG 59.450 45.455 0.00 0.00 0.00 4.10
432 433 2.031258 TGGAGTGTTCTTTGCAACGA 57.969 45.000 0.00 0.00 0.00 3.85
433 434 1.939934 TGGAGTGTTCTTTGCAACGAG 59.060 47.619 0.00 0.00 0.00 4.18
434 435 1.940613 GGAGTGTTCTTTGCAACGAGT 59.059 47.619 0.00 0.00 0.00 4.18
435 436 3.128349 GGAGTGTTCTTTGCAACGAGTA 58.872 45.455 0.00 0.00 0.00 2.59
436 437 3.059800 GGAGTGTTCTTTGCAACGAGTAC 60.060 47.826 0.00 6.11 0.00 2.73
437 438 3.793559 AGTGTTCTTTGCAACGAGTACT 58.206 40.909 14.37 14.37 0.00 2.73
438 439 3.802685 AGTGTTCTTTGCAACGAGTACTC 59.197 43.478 13.18 13.18 0.00 2.59
439 440 3.802685 GTGTTCTTTGCAACGAGTACTCT 59.197 43.478 20.34 5.27 0.00 3.24
440 441 4.270325 GTGTTCTTTGCAACGAGTACTCTT 59.730 41.667 20.34 8.78 0.00 2.85
441 442 4.873827 TGTTCTTTGCAACGAGTACTCTTT 59.126 37.500 20.34 14.63 0.00 2.52
442 443 6.019318 GTGTTCTTTGCAACGAGTACTCTTTA 60.019 38.462 20.34 1.10 0.00 1.85
443 444 6.535865 TGTTCTTTGCAACGAGTACTCTTTAA 59.464 34.615 20.34 7.19 0.00 1.52
444 445 7.225931 TGTTCTTTGCAACGAGTACTCTTTAAT 59.774 33.333 20.34 0.00 0.00 1.40
445 446 7.724305 TCTTTGCAACGAGTACTCTTTAATT 57.276 32.000 20.34 4.67 0.00 1.40
446 447 8.149973 TCTTTGCAACGAGTACTCTTTAATTT 57.850 30.769 20.34 1.88 0.00 1.82
447 448 8.067784 TCTTTGCAACGAGTACTCTTTAATTTG 58.932 33.333 20.34 13.25 0.00 2.32
448 449 6.854496 TGCAACGAGTACTCTTTAATTTGT 57.146 33.333 20.34 5.71 0.00 2.83
449 450 6.655062 TGCAACGAGTACTCTTTAATTTGTG 58.345 36.000 20.34 6.04 0.00 3.33
450 451 6.480651 TGCAACGAGTACTCTTTAATTTGTGA 59.519 34.615 20.34 3.76 0.00 3.58
451 452 7.172532 TGCAACGAGTACTCTTTAATTTGTGAT 59.827 33.333 20.34 0.00 0.00 3.06
452 453 8.015658 GCAACGAGTACTCTTTAATTTGTGATT 58.984 33.333 20.34 0.00 0.00 2.57
453 454 9.878599 CAACGAGTACTCTTTAATTTGTGATTT 57.121 29.630 20.34 0.00 0.00 2.17
455 456 8.433126 ACGAGTACTCTTTAATTTGTGATTTCG 58.567 33.333 20.34 4.34 0.00 3.46
456 457 8.433126 CGAGTACTCTTTAATTTGTGATTTCGT 58.567 33.333 20.34 0.00 0.00 3.85
466 467 6.763303 ATTTGTGATTTCGTACAAAAAGCC 57.237 33.333 6.62 0.00 46.21 4.35
467 468 4.231718 TGTGATTTCGTACAAAAAGCCC 57.768 40.909 0.00 0.00 0.00 5.19
468 469 3.632604 TGTGATTTCGTACAAAAAGCCCA 59.367 39.130 0.00 0.00 0.00 5.36
469 470 4.098044 TGTGATTTCGTACAAAAAGCCCAA 59.902 37.500 0.00 0.00 0.00 4.12
470 471 4.443063 GTGATTTCGTACAAAAAGCCCAAC 59.557 41.667 0.00 0.00 0.00 3.77
471 472 4.098044 TGATTTCGTACAAAAAGCCCAACA 59.902 37.500 0.00 0.00 0.00 3.33
472 473 4.451629 TTTCGTACAAAAAGCCCAACAA 57.548 36.364 0.00 0.00 0.00 2.83
473 474 4.451629 TTCGTACAAAAAGCCCAACAAA 57.548 36.364 0.00 0.00 0.00 2.83
474 475 4.035278 TCGTACAAAAAGCCCAACAAAG 57.965 40.909 0.00 0.00 0.00 2.77
475 476 3.695060 TCGTACAAAAAGCCCAACAAAGA 59.305 39.130 0.00 0.00 0.00 2.52
476 477 4.158025 TCGTACAAAAAGCCCAACAAAGAA 59.842 37.500 0.00 0.00 0.00 2.52
477 478 4.865365 CGTACAAAAAGCCCAACAAAGAAA 59.135 37.500 0.00 0.00 0.00 2.52
478 479 5.348997 CGTACAAAAAGCCCAACAAAGAAAA 59.651 36.000 0.00 0.00 0.00 2.29
479 480 6.128526 CGTACAAAAAGCCCAACAAAGAAAAA 60.129 34.615 0.00 0.00 0.00 1.94
480 481 6.832520 ACAAAAAGCCCAACAAAGAAAAAT 57.167 29.167 0.00 0.00 0.00 1.82
481 482 6.851609 ACAAAAAGCCCAACAAAGAAAAATC 58.148 32.000 0.00 0.00 0.00 2.17
482 483 6.432472 ACAAAAAGCCCAACAAAGAAAAATCA 59.568 30.769 0.00 0.00 0.00 2.57
483 484 6.435430 AAAAGCCCAACAAAGAAAAATCAC 57.565 33.333 0.00 0.00 0.00 3.06
484 485 4.751767 AGCCCAACAAAGAAAAATCACA 57.248 36.364 0.00 0.00 0.00 3.58
485 486 5.096443 AGCCCAACAAAGAAAAATCACAA 57.904 34.783 0.00 0.00 0.00 3.33
486 487 5.495640 AGCCCAACAAAGAAAAATCACAAA 58.504 33.333 0.00 0.00 0.00 2.83
487 488 5.353956 AGCCCAACAAAGAAAAATCACAAAC 59.646 36.000 0.00 0.00 0.00 2.93
488 489 5.448496 GCCCAACAAAGAAAAATCACAAACC 60.448 40.000 0.00 0.00 0.00 3.27
489 490 5.645497 CCCAACAAAGAAAAATCACAAACCA 59.355 36.000 0.00 0.00 0.00 3.67
490 491 6.183360 CCCAACAAAGAAAAATCACAAACCAG 60.183 38.462 0.00 0.00 0.00 4.00
491 492 6.250089 CAACAAAGAAAAATCACAAACCAGC 58.750 36.000 0.00 0.00 0.00 4.85
492 493 4.566360 ACAAAGAAAAATCACAAACCAGCG 59.434 37.500 0.00 0.00 0.00 5.18
493 494 4.647424 AAGAAAAATCACAAACCAGCGA 57.353 36.364 0.00 0.00 0.00 4.93
494 495 3.964909 AGAAAAATCACAAACCAGCGAC 58.035 40.909 0.00 0.00 0.00 5.19
495 496 2.399396 AAAATCACAAACCAGCGACG 57.601 45.000 0.00 0.00 0.00 5.12
496 497 1.588674 AAATCACAAACCAGCGACGA 58.411 45.000 0.00 0.00 0.00 4.20
497 498 1.148310 AATCACAAACCAGCGACGAG 58.852 50.000 0.00 0.00 0.00 4.18
498 499 0.317160 ATCACAAACCAGCGACGAGA 59.683 50.000 0.00 0.00 0.00 4.04
499 500 0.318699 TCACAAACCAGCGACGAGAG 60.319 55.000 0.00 0.00 0.00 3.20
500 501 1.664965 ACAAACCAGCGACGAGAGC 60.665 57.895 0.00 0.00 0.00 4.09
501 502 2.048127 AAACCAGCGACGAGAGCC 60.048 61.111 0.00 0.00 34.64 4.70
502 503 3.916392 AAACCAGCGACGAGAGCCG 62.916 63.158 0.00 0.00 45.44 5.52
504 505 4.838486 CCAGCGACGAGAGCCGAC 62.838 72.222 0.00 0.00 40.30 4.79
505 506 3.805307 CAGCGACGAGAGCCGACT 61.805 66.667 0.00 0.00 40.30 4.18
506 507 3.805307 AGCGACGAGAGCCGACTG 61.805 66.667 0.00 0.00 40.30 3.51
507 508 3.800863 GCGACGAGAGCCGACTGA 61.801 66.667 0.00 0.00 40.30 3.41
508 509 2.401592 CGACGAGAGCCGACTGAG 59.598 66.667 0.00 0.00 40.30 3.35
509 510 2.392181 CGACGAGAGCCGACTGAGT 61.392 63.158 0.00 0.00 40.30 3.41
510 511 1.426223 GACGAGAGCCGACTGAGTC 59.574 63.158 1.65 1.65 41.76 3.36
511 512 1.003112 ACGAGAGCCGACTGAGTCT 60.003 57.895 11.26 0.00 41.76 3.24
512 513 0.606944 ACGAGAGCCGACTGAGTCTT 60.607 55.000 11.26 0.00 41.76 3.01
513 514 1.338864 ACGAGAGCCGACTGAGTCTTA 60.339 52.381 11.26 0.00 41.76 2.10
514 515 1.738350 CGAGAGCCGACTGAGTCTTAA 59.262 52.381 11.26 0.00 41.76 1.85
515 516 2.161808 CGAGAGCCGACTGAGTCTTAAA 59.838 50.000 11.26 0.00 41.76 1.52
516 517 3.503891 GAGAGCCGACTGAGTCTTAAAC 58.496 50.000 11.26 0.00 0.00 2.01
517 518 2.891580 AGAGCCGACTGAGTCTTAAACA 59.108 45.455 11.26 0.00 0.00 2.83
518 519 3.057174 AGAGCCGACTGAGTCTTAAACAG 60.057 47.826 11.26 0.00 37.62 3.16
519 520 2.891580 AGCCGACTGAGTCTTAAACAGA 59.108 45.455 11.26 0.00 35.85 3.41
532 533 7.892778 GTCTTAAACAGACCCAAAAACAAAA 57.107 32.000 0.00 0.00 45.84 2.44
533 534 8.487313 GTCTTAAACAGACCCAAAAACAAAAT 57.513 30.769 0.00 0.00 45.84 1.82
534 535 9.589111 GTCTTAAACAGACCCAAAAACAAAATA 57.411 29.630 0.00 0.00 45.84 1.40
544 545 9.672086 GACCCAAAAACAAAATAAATAAAAGCC 57.328 29.630 0.00 0.00 0.00 4.35
545 546 9.415008 ACCCAAAAACAAAATAAATAAAAGCCT 57.585 25.926 0.00 0.00 0.00 4.58
558 559 9.771534 ATAAATAAAAGCCTAAGTCTAGCTCAG 57.228 33.333 0.00 0.00 35.30 3.35
559 560 6.800072 ATAAAAGCCTAAGTCTAGCTCAGT 57.200 37.500 0.00 0.00 35.30 3.41
560 561 5.491323 AAAAGCCTAAGTCTAGCTCAGTT 57.509 39.130 0.00 0.00 35.30 3.16
561 562 6.607004 AAAAGCCTAAGTCTAGCTCAGTTA 57.393 37.500 0.00 0.00 35.30 2.24
562 563 6.607004 AAAGCCTAAGTCTAGCTCAGTTAA 57.393 37.500 0.00 0.00 35.30 2.01
563 564 6.607004 AAGCCTAAGTCTAGCTCAGTTAAA 57.393 37.500 0.00 0.00 35.30 1.52
564 565 5.968254 AGCCTAAGTCTAGCTCAGTTAAAC 58.032 41.667 0.00 0.00 28.40 2.01
565 566 4.799428 GCCTAAGTCTAGCTCAGTTAAACG 59.201 45.833 0.00 0.00 0.00 3.60
566 567 5.341617 CCTAAGTCTAGCTCAGTTAAACGG 58.658 45.833 0.00 0.00 0.00 4.44
567 568 5.125097 CCTAAGTCTAGCTCAGTTAAACGGA 59.875 44.000 0.00 0.00 0.00 4.69
568 569 5.464030 AAGTCTAGCTCAGTTAAACGGAA 57.536 39.130 0.00 0.00 0.00 4.30
569 570 5.464030 AGTCTAGCTCAGTTAAACGGAAA 57.536 39.130 0.00 0.00 0.00 3.13
570 571 5.228665 AGTCTAGCTCAGTTAAACGGAAAC 58.771 41.667 0.00 0.00 0.00 2.78
571 572 4.986659 GTCTAGCTCAGTTAAACGGAAACA 59.013 41.667 0.00 0.00 0.00 2.83
572 573 5.464389 GTCTAGCTCAGTTAAACGGAAACAA 59.536 40.000 0.00 0.00 0.00 2.83
573 574 6.018507 GTCTAGCTCAGTTAAACGGAAACAAA 60.019 38.462 0.00 0.00 0.00 2.83
574 575 5.570234 AGCTCAGTTAAACGGAAACAAAA 57.430 34.783 0.00 0.00 0.00 2.44
575 576 5.956642 AGCTCAGTTAAACGGAAACAAAAA 58.043 33.333 0.00 0.00 0.00 1.94
603 604 3.923354 ACAGACATGTGCTCTGGAC 57.077 52.632 1.15 0.00 39.69 4.02
604 605 1.051008 ACAGACATGTGCTCTGGACA 58.949 50.000 1.15 0.00 39.69 4.02
605 606 1.001746 ACAGACATGTGCTCTGGACAG 59.998 52.381 1.15 0.00 39.69 3.51
606 607 0.036577 AGACATGTGCTCTGGACAGC 60.037 55.000 1.15 0.00 40.13 4.40
607 608 1.002868 ACATGTGCTCTGGACAGCC 60.003 57.895 0.00 0.00 38.80 4.85
608 609 1.002990 CATGTGCTCTGGACAGCCA 60.003 57.895 0.00 0.00 43.47 4.75
609 610 1.002868 ATGTGCTCTGGACAGCCAC 60.003 57.895 12.77 12.77 39.92 5.01
610 611 1.771783 ATGTGCTCTGGACAGCCACA 61.772 55.000 19.95 19.95 39.92 4.17
611 612 1.227943 GTGCTCTGGACAGCCACAA 60.228 57.895 14.02 0.00 39.92 3.33
612 613 0.607489 GTGCTCTGGACAGCCACAAT 60.607 55.000 14.02 0.00 39.92 2.71
613 614 0.321919 TGCTCTGGACAGCCACAATC 60.322 55.000 0.00 0.00 39.92 2.67
614 615 1.364626 GCTCTGGACAGCCACAATCG 61.365 60.000 0.00 0.00 39.92 3.34
615 616 0.247460 CTCTGGACAGCCACAATCGA 59.753 55.000 0.00 0.00 39.92 3.59
616 617 0.684535 TCTGGACAGCCACAATCGAA 59.315 50.000 0.00 0.00 39.92 3.71
617 618 0.798776 CTGGACAGCCACAATCGAAC 59.201 55.000 0.00 0.00 39.92 3.95
618 619 0.948623 TGGACAGCCACAATCGAACG 60.949 55.000 0.00 0.00 39.92 3.95
619 620 1.635663 GGACAGCCACAATCGAACGG 61.636 60.000 0.00 0.00 0.00 4.44
620 621 0.669318 GACAGCCACAATCGAACGGA 60.669 55.000 0.00 0.00 0.00 4.69
621 622 0.670546 ACAGCCACAATCGAACGGAG 60.671 55.000 0.00 0.00 0.00 4.63
623 624 0.389948 AGCCACAATCGAACGGAGTC 60.390 55.000 0.00 0.00 45.00 3.36
641 642 3.276857 AGTCGACTGCTAATTCTCGGTA 58.723 45.455 19.30 0.00 0.00 4.02
642 643 3.312973 AGTCGACTGCTAATTCTCGGTAG 59.687 47.826 19.30 0.00 0.00 3.18
643 644 3.065095 GTCGACTGCTAATTCTCGGTAGT 59.935 47.826 8.70 0.00 0.00 2.73
663 664 8.138712 CGGTAGTCTTAGCTCTTCAATCTATTT 58.861 37.037 0.00 0.00 0.00 1.40
717 718 5.178067 GGAAAACAAAATCCTTGCATCTGTG 59.822 40.000 0.00 0.00 32.75 3.66
748 749 6.983890 CCAGCTTAAGATAAGAAGAAGAGTCC 59.016 42.308 6.67 0.00 0.00 3.85
804 807 5.534654 ACTCTACAAGCTAGATGAGGATGAC 59.465 44.000 0.00 0.00 0.00 3.06
1203 1285 1.673665 CTGGGAAGGTGTGAGCTGC 60.674 63.158 0.00 0.00 0.00 5.25
1281 1363 0.548510 CCATTCCAGGAACCTCCCTC 59.451 60.000 3.18 0.00 37.19 4.30
1360 1442 0.761702 AGGGGTACTCACCGTGTTGT 60.762 55.000 0.00 2.24 46.86 3.32
1501 1583 2.528127 TCAAGGGCAGGGTTCCGA 60.528 61.111 0.00 0.00 0.00 4.55
1511 1593 1.960689 CAGGGTTCCGAAATGGTTGTT 59.039 47.619 0.00 0.00 39.52 2.83
1692 1774 4.395519 CCTGATGGGCGTTCACAA 57.604 55.556 0.00 0.00 0.00 3.33
1795 1877 4.979335 TGTCATAACAGGGATCAACAACA 58.021 39.130 0.00 0.00 0.00 3.33
2120 2227 5.755409 ATAACAGGAGGTTGATGTGTGTA 57.245 39.130 0.00 0.00 40.73 2.90
2399 2579 4.263994 ACTTCTAGGCTACTTGAGGAGTCA 60.264 45.833 0.00 0.00 39.86 3.41
2418 2598 3.881688 GTCAAGATGGGATGATGTTGAGG 59.118 47.826 0.00 0.00 36.56 3.86
2639 3159 4.336153 TGGTACATCTTTATGCATGCACAG 59.664 41.667 25.37 18.79 36.50 3.66
2647 3167 3.755628 GCATGCACAGCACAGGGG 61.756 66.667 14.21 0.00 43.04 4.79
2675 3195 4.583489 GGTCGATTATACTCCTTGAGGTGA 59.417 45.833 6.14 0.00 33.35 4.02
2735 3256 0.594796 CTTGCCTTGCGGTGTTGTTC 60.595 55.000 0.00 0.00 0.00 3.18
2736 3257 2.010582 TTGCCTTGCGGTGTTGTTCC 62.011 55.000 0.00 0.00 0.00 3.62
2771 3292 7.088589 ACTTTGCTTTGATCCATACATACAC 57.911 36.000 0.00 0.00 0.00 2.90
2783 3304 4.219507 CCATACATACACCAAAACAAGGCA 59.780 41.667 0.00 0.00 0.00 4.75
2786 3307 1.769026 TACACCAAAACAAGGCAGCA 58.231 45.000 0.00 0.00 0.00 4.41
2793 3320 1.678598 AAACAAGGCAGCAGCAGCAA 61.679 50.000 12.41 0.00 45.49 3.91
2805 3332 2.620112 GCAGCAACAGCACGTCCAT 61.620 57.895 0.00 0.00 0.00 3.41
2808 3335 1.207593 GCAACAGCACGTCCATGTC 59.792 57.895 0.00 0.00 0.00 3.06
2822 3349 5.817816 ACGTCCATGTCTCAAATATTCTTCC 59.182 40.000 0.00 0.00 0.00 3.46
2850 3428 6.451393 TCTTCTTCTTCTTCTTCTTCTTCCG 58.549 40.000 0.00 0.00 0.00 4.30
2866 3444 1.104577 TCCGGCAAACCAAACCAGTC 61.105 55.000 0.00 0.00 34.57 3.51
2895 3473 8.247562 AGTATTAAGAGATCAATCACTATCCGC 58.752 37.037 0.00 0.00 0.00 5.54
2897 3475 3.234353 AGAGATCAATCACTATCCGCCA 58.766 45.455 0.00 0.00 0.00 5.69
2906 3484 7.041721 TCAATCACTATCCGCCATATTCATAC 58.958 38.462 0.00 0.00 0.00 2.39
2928 3506 1.315981 CCTCGAGAGGTACTGCAGCA 61.316 60.000 15.71 0.00 41.55 4.41
2946 3524 2.098233 AACGTACGCAGGAATGCCG 61.098 57.895 16.72 0.00 39.96 5.69
2972 3550 4.303993 TCAGCAGCAGCAGTCGCA 62.304 61.111 3.17 0.00 45.49 5.10
2990 3568 1.155889 CAGCCGCAAACATCAGTACA 58.844 50.000 0.00 0.00 0.00 2.90
2996 3574 2.416547 CGCAAACATCAGTACAAGGAGG 59.583 50.000 0.00 0.00 0.00 4.30
3046 3624 0.036952 CACTAGGGACAGCTGTGTGG 60.037 60.000 27.27 12.87 36.88 4.17
3047 3625 1.078848 CTAGGGACAGCTGTGTGGC 60.079 63.158 27.27 9.66 36.88 5.01
3076 3654 2.261052 GCACGCTCTGCTCTGTCT 59.739 61.111 0.00 0.00 43.33 3.41
3083 3661 0.179140 CTCTGCTCTGTCTTCCTCGC 60.179 60.000 0.00 0.00 0.00 5.03
3099 3677 4.148825 GCCGTCATCCTCGTGGCT 62.149 66.667 0.00 0.00 42.44 4.75
3102 3680 2.512515 GTCATCCTCGTGGCTGGC 60.513 66.667 7.45 1.84 30.84 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.801913 CCGGTGACTCTCGCGAAAG 60.802 63.158 11.33 9.68 0.00 2.62
8 9 2.257371 CCGGTGACTCTCGCGAAA 59.743 61.111 11.33 0.00 0.00 3.46
9 10 4.415332 GCCGGTGACTCTCGCGAA 62.415 66.667 11.33 0.02 0.00 4.70
21 22 2.978010 CAAAAGAGGCACGCCGGT 60.978 61.111 1.90 0.00 41.95 5.28
22 23 3.737172 CCAAAAGAGGCACGCCGG 61.737 66.667 0.00 0.00 41.95 6.13
23 24 1.791103 TTTCCAAAAGAGGCACGCCG 61.791 55.000 1.61 0.00 41.95 6.46
24 25 0.039165 CTTTCCAAAAGAGGCACGCC 60.039 55.000 0.00 0.00 0.00 5.68
25 26 0.039165 CCTTTCCAAAAGAGGCACGC 60.039 55.000 1.06 0.00 0.00 5.34
26 27 0.598065 CCCTTTCCAAAAGAGGCACG 59.402 55.000 1.06 0.00 0.00 5.34
27 28 1.995376 TCCCTTTCCAAAAGAGGCAC 58.005 50.000 1.06 0.00 0.00 5.01
28 29 2.765689 TTCCCTTTCCAAAAGAGGCA 57.234 45.000 1.06 0.00 0.00 4.75
29 30 4.415881 TTTTTCCCTTTCCAAAAGAGGC 57.584 40.909 1.06 0.00 0.00 4.70
66 67 3.554324 CGTGACTCTCGTGGAAAGAAAAA 59.446 43.478 0.00 0.00 0.00 1.94
67 68 3.120792 CGTGACTCTCGTGGAAAGAAAA 58.879 45.455 0.00 0.00 0.00 2.29
68 69 2.545113 CCGTGACTCTCGTGGAAAGAAA 60.545 50.000 0.24 0.00 0.00 2.52
69 70 1.000607 CCGTGACTCTCGTGGAAAGAA 60.001 52.381 0.24 0.00 0.00 2.52
70 71 0.596577 CCGTGACTCTCGTGGAAAGA 59.403 55.000 0.24 0.00 0.00 2.52
71 72 0.314302 ACCGTGACTCTCGTGGAAAG 59.686 55.000 0.24 0.00 0.00 2.62
72 73 0.748450 AACCGTGACTCTCGTGGAAA 59.252 50.000 0.24 0.00 0.00 3.13
73 74 0.748450 AAACCGTGACTCTCGTGGAA 59.252 50.000 0.24 0.00 0.00 3.53
74 75 0.748450 AAAACCGTGACTCTCGTGGA 59.252 50.000 0.24 0.00 0.00 4.02
75 76 0.859232 CAAAACCGTGACTCTCGTGG 59.141 55.000 0.24 0.00 0.00 4.94
76 77 0.232303 GCAAAACCGTGACTCTCGTG 59.768 55.000 0.24 0.00 0.00 4.35
77 78 0.104304 AGCAAAACCGTGACTCTCGT 59.896 50.000 0.24 0.00 0.00 4.18
78 79 1.192534 GAAGCAAAACCGTGACTCTCG 59.807 52.381 0.00 0.00 0.00 4.04
79 80 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
80 81 1.134220 TGGAAGCAAAACCGTGACTCT 60.134 47.619 0.00 0.00 0.00 3.24
81 82 1.002792 GTGGAAGCAAAACCGTGACTC 60.003 52.381 0.00 0.00 0.00 3.36
82 83 1.021968 GTGGAAGCAAAACCGTGACT 58.978 50.000 0.00 0.00 0.00 3.41
83 84 0.316689 CGTGGAAGCAAAACCGTGAC 60.317 55.000 0.00 0.00 0.00 3.67
84 85 0.462225 TCGTGGAAGCAAAACCGTGA 60.462 50.000 0.00 0.00 0.00 4.35
85 86 0.041312 CTCGTGGAAGCAAAACCGTG 60.041 55.000 0.00 0.00 0.00 4.94
86 87 0.179067 TCTCGTGGAAGCAAAACCGT 60.179 50.000 0.00 0.00 0.00 4.83
87 88 0.512952 CTCTCGTGGAAGCAAAACCG 59.487 55.000 0.00 0.00 0.00 4.44
88 89 0.875059 CCTCTCGTGGAAGCAAAACC 59.125 55.000 0.00 0.00 0.00 3.27
89 90 0.238553 GCCTCTCGTGGAAGCAAAAC 59.761 55.000 0.00 0.00 32.03 2.43
90 91 0.179032 TGCCTCTCGTGGAAGCAAAA 60.179 50.000 2.93 0.00 38.32 2.44
91 92 0.884704 GTGCCTCTCGTGGAAGCAAA 60.885 55.000 6.14 0.00 42.24 3.68
92 93 1.301716 GTGCCTCTCGTGGAAGCAA 60.302 57.895 6.14 0.00 42.24 3.91
93 94 2.343758 GTGCCTCTCGTGGAAGCA 59.656 61.111 0.00 1.60 38.87 3.91
94 95 2.811317 CGTGCCTCTCGTGGAAGC 60.811 66.667 0.00 0.00 32.35 3.86
95 96 2.125912 CCGTGCCTCTCGTGGAAG 60.126 66.667 0.00 0.00 0.00 3.46
96 97 2.504274 AACCGTGCCTCTCGTGGAA 61.504 57.895 0.00 0.00 0.00 3.53
97 98 2.915659 AACCGTGCCTCTCGTGGA 60.916 61.111 0.00 0.00 0.00 4.02
98 99 2.738521 CAACCGTGCCTCTCGTGG 60.739 66.667 0.00 0.00 0.00 4.94
99 100 2.029073 ACAACCGTGCCTCTCGTG 59.971 61.111 0.00 0.00 0.00 4.35
100 101 1.816863 ATCACAACCGTGCCTCTCGT 61.817 55.000 0.00 0.00 43.28 4.18
101 102 0.670546 AATCACAACCGTGCCTCTCG 60.671 55.000 0.00 0.00 43.28 4.04
102 103 1.464997 GAAATCACAACCGTGCCTCTC 59.535 52.381 0.00 0.00 43.28 3.20
103 104 1.523758 GAAATCACAACCGTGCCTCT 58.476 50.000 0.00 0.00 43.28 3.69
104 105 0.165944 CGAAATCACAACCGTGCCTC 59.834 55.000 0.00 0.00 43.28 4.70
105 106 1.852067 GCGAAATCACAACCGTGCCT 61.852 55.000 0.00 0.00 43.28 4.75
106 107 1.442017 GCGAAATCACAACCGTGCC 60.442 57.895 0.00 0.00 43.28 5.01
107 108 1.792057 CGCGAAATCACAACCGTGC 60.792 57.895 0.00 0.00 43.28 5.34
108 109 0.179250 CTCGCGAAATCACAACCGTG 60.179 55.000 11.33 0.00 45.08 4.94
109 110 0.319211 TCTCGCGAAATCACAACCGT 60.319 50.000 11.33 0.00 0.00 4.83
110 111 0.366871 CTCTCGCGAAATCACAACCG 59.633 55.000 11.33 0.00 0.00 4.44
111 112 0.721718 CCTCTCGCGAAATCACAACC 59.278 55.000 11.33 0.00 0.00 3.77
112 113 0.095417 GCCTCTCGCGAAATCACAAC 59.905 55.000 11.33 0.00 0.00 3.32
113 114 0.320334 TGCCTCTCGCGAAATCACAA 60.320 50.000 11.33 0.00 42.08 3.33
114 115 1.014044 GTGCCTCTCGCGAAATCACA 61.014 55.000 11.33 2.03 42.08 3.58
115 116 1.710339 GTGCCTCTCGCGAAATCAC 59.290 57.895 11.33 12.02 42.08 3.06
116 117 4.185413 GTGCCTCTCGCGAAATCA 57.815 55.556 11.33 2.93 42.08 2.57
134 135 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
135 136 1.912371 CTTTCCGAAAGAGGCACGCC 61.912 60.000 14.72 0.00 41.02 5.68
136 137 1.497722 CTTTCCGAAAGAGGCACGC 59.502 57.895 14.72 0.00 41.02 5.34
137 138 1.298859 CCCTTTCCGAAAGAGGCACG 61.299 60.000 20.43 4.41 41.02 5.34
138 139 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
139 140 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
140 141 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
164 165 1.730451 AAAACCAAACCGGGAGCACG 61.730 55.000 6.32 0.00 40.22 5.34
165 166 0.462375 AAAAACCAAACCGGGAGCAC 59.538 50.000 6.32 0.00 40.22 4.40
166 167 2.903404 AAAAACCAAACCGGGAGCA 58.097 47.368 6.32 0.00 40.22 4.26
207 208 7.540299 TGTTGATAGGTTTTGACGAACTTTTT 58.460 30.769 0.00 0.00 0.00 1.94
208 209 7.090953 TGTTGATAGGTTTTGACGAACTTTT 57.909 32.000 0.00 0.00 0.00 2.27
209 210 6.687081 TGTTGATAGGTTTTGACGAACTTT 57.313 33.333 0.00 0.00 0.00 2.66
210 211 6.293955 CCATGTTGATAGGTTTTGACGAACTT 60.294 38.462 0.00 0.00 0.00 2.66
211 212 5.181245 CCATGTTGATAGGTTTTGACGAACT 59.819 40.000 0.00 0.00 0.00 3.01
212 213 5.390613 CCATGTTGATAGGTTTTGACGAAC 58.609 41.667 0.00 0.00 0.00 3.95
213 214 4.457603 CCCATGTTGATAGGTTTTGACGAA 59.542 41.667 0.00 0.00 0.00 3.85
214 215 4.006989 CCCATGTTGATAGGTTTTGACGA 58.993 43.478 0.00 0.00 0.00 4.20
215 216 4.006989 TCCCATGTTGATAGGTTTTGACG 58.993 43.478 0.00 0.00 0.00 4.35
216 217 5.888161 AGATCCCATGTTGATAGGTTTTGAC 59.112 40.000 0.00 0.00 0.00 3.18
217 218 6.078456 AGATCCCATGTTGATAGGTTTTGA 57.922 37.500 0.00 0.00 0.00 2.69
218 219 7.056635 ACTAGATCCCATGTTGATAGGTTTTG 58.943 38.462 0.00 0.00 0.00 2.44
219 220 7.213178 ACTAGATCCCATGTTGATAGGTTTT 57.787 36.000 0.00 0.00 0.00 2.43
220 221 6.831664 ACTAGATCCCATGTTGATAGGTTT 57.168 37.500 0.00 0.00 0.00 3.27
221 222 6.831664 AACTAGATCCCATGTTGATAGGTT 57.168 37.500 0.00 0.00 0.00 3.50
222 223 6.831664 AAACTAGATCCCATGTTGATAGGT 57.168 37.500 0.00 0.00 0.00 3.08
223 224 7.282585 TCAAAACTAGATCCCATGTTGATAGG 58.717 38.462 0.00 0.00 0.00 2.57
224 225 8.737168 TTCAAAACTAGATCCCATGTTGATAG 57.263 34.615 0.00 0.00 0.00 2.08
225 226 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
226 227 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
227 228 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
228 229 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
229 230 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
230 231 7.205515 AGATCTTCAAAACTAGATCCCATGT 57.794 36.000 0.00 0.00 38.24 3.21
231 232 6.423302 CGAGATCTTCAAAACTAGATCCCATG 59.577 42.308 0.00 0.00 38.24 3.66
232 233 6.325028 TCGAGATCTTCAAAACTAGATCCCAT 59.675 38.462 0.00 0.00 38.24 4.00
233 234 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
234 235 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
235 236 5.683743 CGTCGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
236 237 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
237 238 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
238 239 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
239 240 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
240 241 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
241 242 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
242 243 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
243 244 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
254 255 0.527600 CATTGGATTCCTCGCGTCGA 60.528 55.000 5.77 0.00 0.00 4.20
255 256 0.527600 TCATTGGATTCCTCGCGTCG 60.528 55.000 5.77 0.00 0.00 5.12
256 257 1.528586 CATCATTGGATTCCTCGCGTC 59.471 52.381 5.77 0.00 0.00 5.19
257 258 1.138859 TCATCATTGGATTCCTCGCGT 59.861 47.619 5.77 0.00 0.00 6.01
258 259 1.869774 TCATCATTGGATTCCTCGCG 58.130 50.000 0.00 0.00 0.00 5.87
259 260 4.142403 TGTTTTCATCATTGGATTCCTCGC 60.142 41.667 3.95 0.00 0.00 5.03
260 261 5.124457 ACTGTTTTCATCATTGGATTCCTCG 59.876 40.000 3.95 0.00 0.00 4.63
261 262 6.521151 ACTGTTTTCATCATTGGATTCCTC 57.479 37.500 3.95 0.00 0.00 3.71
262 263 6.923199 AACTGTTTTCATCATTGGATTCCT 57.077 33.333 3.95 0.00 0.00 3.36
263 264 7.153985 TCAAACTGTTTTCATCATTGGATTCC 58.846 34.615 2.41 0.00 0.00 3.01
264 265 8.084073 TCTCAAACTGTTTTCATCATTGGATTC 58.916 33.333 2.41 0.00 0.00 2.52
265 266 7.954835 TCTCAAACTGTTTTCATCATTGGATT 58.045 30.769 2.41 0.00 0.00 3.01
266 267 7.528996 TCTCAAACTGTTTTCATCATTGGAT 57.471 32.000 2.41 0.00 0.00 3.41
267 268 6.957920 TCTCAAACTGTTTTCATCATTGGA 57.042 33.333 2.41 0.00 0.00 3.53
268 269 8.492748 CAAATCTCAAACTGTTTTCATCATTGG 58.507 33.333 2.41 0.00 0.00 3.16
269 270 8.492748 CCAAATCTCAAACTGTTTTCATCATTG 58.507 33.333 2.41 5.52 0.00 2.82
270 271 8.423349 TCCAAATCTCAAACTGTTTTCATCATT 58.577 29.630 2.41 0.00 0.00 2.57
271 272 7.954835 TCCAAATCTCAAACTGTTTTCATCAT 58.045 30.769 2.41 0.00 0.00 2.45
272 273 7.345422 TCCAAATCTCAAACTGTTTTCATCA 57.655 32.000 2.41 0.00 0.00 3.07
273 274 7.148689 GCATCCAAATCTCAAACTGTTTTCATC 60.149 37.037 2.41 0.00 0.00 2.92
274 275 6.647895 GCATCCAAATCTCAAACTGTTTTCAT 59.352 34.615 2.41 0.00 0.00 2.57
275 276 5.984926 GCATCCAAATCTCAAACTGTTTTCA 59.015 36.000 2.41 0.00 0.00 2.69
276 277 5.984926 TGCATCCAAATCTCAAACTGTTTTC 59.015 36.000 2.41 0.00 0.00 2.29
277 278 5.754890 GTGCATCCAAATCTCAAACTGTTTT 59.245 36.000 2.41 0.00 0.00 2.43
278 279 5.291971 GTGCATCCAAATCTCAAACTGTTT 58.708 37.500 0.00 0.00 0.00 2.83
279 280 4.557296 CGTGCATCCAAATCTCAAACTGTT 60.557 41.667 0.00 0.00 0.00 3.16
280 281 3.058016 CGTGCATCCAAATCTCAAACTGT 60.058 43.478 0.00 0.00 0.00 3.55
281 282 3.495193 CGTGCATCCAAATCTCAAACTG 58.505 45.455 0.00 0.00 0.00 3.16
282 283 2.489329 CCGTGCATCCAAATCTCAAACT 59.511 45.455 0.00 0.00 0.00 2.66
283 284 2.228822 ACCGTGCATCCAAATCTCAAAC 59.771 45.455 0.00 0.00 0.00 2.93
284 285 2.513753 ACCGTGCATCCAAATCTCAAA 58.486 42.857 0.00 0.00 0.00 2.69
285 286 2.198827 ACCGTGCATCCAAATCTCAA 57.801 45.000 0.00 0.00 0.00 3.02
286 287 2.198827 AACCGTGCATCCAAATCTCA 57.801 45.000 0.00 0.00 0.00 3.27
287 288 4.394920 TCTTAAACCGTGCATCCAAATCTC 59.605 41.667 0.00 0.00 0.00 2.75
288 289 4.331968 TCTTAAACCGTGCATCCAAATCT 58.668 39.130 0.00 0.00 0.00 2.40
289 290 4.394920 TCTCTTAAACCGTGCATCCAAATC 59.605 41.667 0.00 0.00 0.00 2.17
290 291 4.331968 TCTCTTAAACCGTGCATCCAAAT 58.668 39.130 0.00 0.00 0.00 2.32
291 292 3.745799 TCTCTTAAACCGTGCATCCAAA 58.254 40.909 0.00 0.00 0.00 3.28
292 293 3.410631 TCTCTTAAACCGTGCATCCAA 57.589 42.857 0.00 0.00 0.00 3.53
293 294 3.627395 ATCTCTTAAACCGTGCATCCA 57.373 42.857 0.00 0.00 0.00 3.41
294 295 6.255950 GTTTTATCTCTTAAACCGTGCATCC 58.744 40.000 0.00 0.00 29.47 3.51
295 296 5.957796 CGTTTTATCTCTTAAACCGTGCATC 59.042 40.000 0.00 0.00 32.79 3.91
296 297 5.410439 ACGTTTTATCTCTTAAACCGTGCAT 59.590 36.000 0.00 0.00 44.18 3.96
297 298 4.751098 ACGTTTTATCTCTTAAACCGTGCA 59.249 37.500 0.86 0.00 44.18 4.57
298 299 5.273523 ACGTTTTATCTCTTAAACCGTGC 57.726 39.130 0.86 0.00 44.18 5.34
299 300 7.851963 TCAAAACGTTTTATCTCTTAAACCGTG 59.148 33.333 24.79 8.65 44.82 4.94
300 301 7.918643 TCAAAACGTTTTATCTCTTAAACCGT 58.081 30.769 24.79 0.00 46.69 4.83
301 302 8.770850 TTCAAAACGTTTTATCTCTTAAACCG 57.229 30.769 24.79 8.91 40.37 4.44
342 343 4.685848 GCAACCTGGGAGTTTTCCATTTTT 60.686 41.667 0.00 0.00 45.98 1.94
343 344 3.181455 GCAACCTGGGAGTTTTCCATTTT 60.181 43.478 0.00 0.00 45.98 1.82
344 345 2.368548 GCAACCTGGGAGTTTTCCATTT 59.631 45.455 0.00 0.00 45.98 2.32
345 346 1.970640 GCAACCTGGGAGTTTTCCATT 59.029 47.619 0.00 0.00 45.98 3.16
346 347 1.632589 GCAACCTGGGAGTTTTCCAT 58.367 50.000 0.00 0.00 45.98 3.41
347 348 0.821711 CGCAACCTGGGAGTTTTCCA 60.822 55.000 0.00 0.00 45.98 3.53
348 349 0.536460 TCGCAACCTGGGAGTTTTCC 60.536 55.000 0.00 0.00 43.23 3.13
349 350 0.591659 GTCGCAACCTGGGAGTTTTC 59.408 55.000 0.00 0.00 40.09 2.29
350 351 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
351 352 0.106918 TTGTCGCAACCTGGGAGTTT 60.107 50.000 0.00 0.00 40.09 2.66
352 353 0.535102 CTTGTCGCAACCTGGGAGTT 60.535 55.000 0.00 0.00 40.09 3.01
353 354 1.071471 CTTGTCGCAACCTGGGAGT 59.929 57.895 0.00 0.00 40.09 3.85
354 355 1.071471 ACTTGTCGCAACCTGGGAG 59.929 57.895 0.00 0.00 40.09 4.30
355 356 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
356 357 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
357 358 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
358 359 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
359 360 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
378 379 4.047059 AAGTGGCGCACATGCAGC 62.047 61.111 10.83 8.22 42.21 5.25
379 380 2.126618 CAAGTGGCGCACATGCAG 60.127 61.111 10.83 0.00 42.21 4.41
380 381 2.906388 ACAAGTGGCGCACATGCA 60.906 55.556 10.83 0.00 36.67 3.96
381 382 2.126734 GACAAGTGGCGCACATGC 60.127 61.111 10.83 0.00 36.67 4.06
382 383 2.174107 CGACAAGTGGCGCACATG 59.826 61.111 10.83 11.41 40.91 3.21
392 393 0.393077 CTTCCCAGGTCACGACAAGT 59.607 55.000 0.00 0.00 0.00 3.16
393 394 0.679505 TCTTCCCAGGTCACGACAAG 59.320 55.000 0.00 0.00 0.00 3.16
394 395 1.001974 CATCTTCCCAGGTCACGACAA 59.998 52.381 0.00 0.00 0.00 3.18
395 396 0.608130 CATCTTCCCAGGTCACGACA 59.392 55.000 0.00 0.00 0.00 4.35
396 397 0.108138 CCATCTTCCCAGGTCACGAC 60.108 60.000 0.00 0.00 0.00 4.34
397 398 0.252057 TCCATCTTCCCAGGTCACGA 60.252 55.000 0.00 0.00 0.00 4.35
398 399 0.176680 CTCCATCTTCCCAGGTCACG 59.823 60.000 0.00 0.00 0.00 4.35
399 400 1.065854 CACTCCATCTTCCCAGGTCAC 60.066 57.143 0.00 0.00 0.00 3.67
400 401 1.279496 CACTCCATCTTCCCAGGTCA 58.721 55.000 0.00 0.00 0.00 4.02
401 402 1.280457 ACACTCCATCTTCCCAGGTC 58.720 55.000 0.00 0.00 0.00 3.85
402 403 1.630878 GAACACTCCATCTTCCCAGGT 59.369 52.381 0.00 0.00 0.00 4.00
403 404 1.912043 AGAACACTCCATCTTCCCAGG 59.088 52.381 0.00 0.00 0.00 4.45
404 405 3.710209 AAGAACACTCCATCTTCCCAG 57.290 47.619 0.00 0.00 30.16 4.45
405 406 3.754965 CAAAGAACACTCCATCTTCCCA 58.245 45.455 0.00 0.00 34.90 4.37
406 407 2.489722 GCAAAGAACACTCCATCTTCCC 59.510 50.000 0.00 0.00 34.90 3.97
407 408 3.149196 TGCAAAGAACACTCCATCTTCC 58.851 45.455 0.00 0.00 34.90 3.46
408 409 4.540824 GTTGCAAAGAACACTCCATCTTC 58.459 43.478 0.00 0.00 34.90 2.87
409 410 3.003689 CGTTGCAAAGAACACTCCATCTT 59.996 43.478 6.52 0.00 37.49 2.40
410 411 2.549754 CGTTGCAAAGAACACTCCATCT 59.450 45.455 6.52 0.00 0.00 2.90
411 412 2.548057 TCGTTGCAAAGAACACTCCATC 59.452 45.455 12.88 0.00 0.00 3.51
412 413 2.549754 CTCGTTGCAAAGAACACTCCAT 59.450 45.455 15.91 0.00 0.00 3.41
413 414 1.939934 CTCGTTGCAAAGAACACTCCA 59.060 47.619 15.91 0.00 0.00 3.86
414 415 1.940613 ACTCGTTGCAAAGAACACTCC 59.059 47.619 15.91 0.00 0.00 3.85
415 416 3.802685 AGTACTCGTTGCAAAGAACACTC 59.197 43.478 15.91 5.78 0.00 3.51
416 417 3.793559 AGTACTCGTTGCAAAGAACACT 58.206 40.909 15.91 16.69 0.00 3.55
417 418 3.802685 AGAGTACTCGTTGCAAAGAACAC 59.197 43.478 17.07 14.96 34.09 3.32
418 419 4.054780 AGAGTACTCGTTGCAAAGAACA 57.945 40.909 17.07 4.24 34.09 3.18
419 420 5.405331 AAAGAGTACTCGTTGCAAAGAAC 57.595 39.130 21.14 11.95 30.42 3.01
420 421 7.724305 ATTAAAGAGTACTCGTTGCAAAGAA 57.276 32.000 27.67 16.24 33.56 2.52
421 422 7.724305 AATTAAAGAGTACTCGTTGCAAAGA 57.276 32.000 27.67 14.45 33.56 2.52
422 423 7.855904 ACAAATTAAAGAGTACTCGTTGCAAAG 59.144 33.333 27.67 18.35 33.56 2.77
423 424 7.642194 CACAAATTAAAGAGTACTCGTTGCAAA 59.358 33.333 27.67 17.42 33.56 3.68
424 425 7.011576 TCACAAATTAAAGAGTACTCGTTGCAA 59.988 33.333 27.67 18.02 33.56 4.08
425 426 6.480651 TCACAAATTAAAGAGTACTCGTTGCA 59.519 34.615 27.67 17.30 33.56 4.08
426 427 6.884187 TCACAAATTAAAGAGTACTCGTTGC 58.116 36.000 27.67 2.54 33.56 4.17
427 428 9.878599 AAATCACAAATTAAAGAGTACTCGTTG 57.121 29.630 27.67 20.45 33.56 4.10
429 430 8.433126 CGAAATCACAAATTAAAGAGTACTCGT 58.567 33.333 17.07 11.52 34.09 4.18
430 431 8.433126 ACGAAATCACAAATTAAAGAGTACTCG 58.567 33.333 17.07 3.12 34.09 4.18
440 441 8.756864 GGCTTTTTGTACGAAATCACAAATTAA 58.243 29.630 9.11 0.00 42.48 1.40
441 442 7.382759 GGGCTTTTTGTACGAAATCACAAATTA 59.617 33.333 9.11 0.00 42.48 1.40
442 443 6.201997 GGGCTTTTTGTACGAAATCACAAATT 59.798 34.615 9.11 0.00 42.48 1.82
443 444 5.694458 GGGCTTTTTGTACGAAATCACAAAT 59.306 36.000 9.11 0.00 42.48 2.32
444 445 5.044558 GGGCTTTTTGTACGAAATCACAAA 58.955 37.500 9.11 0.00 41.56 2.83
445 446 4.098044 TGGGCTTTTTGTACGAAATCACAA 59.902 37.500 9.11 0.00 32.98 3.33
446 447 3.632604 TGGGCTTTTTGTACGAAATCACA 59.367 39.130 9.11 8.72 0.00 3.58
447 448 4.231718 TGGGCTTTTTGTACGAAATCAC 57.768 40.909 9.11 6.42 0.00 3.06
448 449 4.098044 TGTTGGGCTTTTTGTACGAAATCA 59.902 37.500 9.11 3.87 0.00 2.57
449 450 4.612943 TGTTGGGCTTTTTGTACGAAATC 58.387 39.130 9.11 4.79 0.00 2.17
450 451 4.657436 TGTTGGGCTTTTTGTACGAAAT 57.343 36.364 9.11 0.00 0.00 2.17
451 452 4.451629 TTGTTGGGCTTTTTGTACGAAA 57.548 36.364 4.04 4.04 0.00 3.46
452 453 4.158025 TCTTTGTTGGGCTTTTTGTACGAA 59.842 37.500 0.00 0.00 0.00 3.85
453 454 3.695060 TCTTTGTTGGGCTTTTTGTACGA 59.305 39.130 0.00 0.00 0.00 3.43
454 455 4.035278 TCTTTGTTGGGCTTTTTGTACG 57.965 40.909 0.00 0.00 0.00 3.67
455 456 6.729391 TTTTCTTTGTTGGGCTTTTTGTAC 57.271 33.333 0.00 0.00 0.00 2.90
456 457 7.607991 TGATTTTTCTTTGTTGGGCTTTTTGTA 59.392 29.630 0.00 0.00 0.00 2.41
457 458 6.432472 TGATTTTTCTTTGTTGGGCTTTTTGT 59.568 30.769 0.00 0.00 0.00 2.83
458 459 6.746822 GTGATTTTTCTTTGTTGGGCTTTTTG 59.253 34.615 0.00 0.00 0.00 2.44
459 460 6.432472 TGTGATTTTTCTTTGTTGGGCTTTTT 59.568 30.769 0.00 0.00 0.00 1.94
460 461 5.942826 TGTGATTTTTCTTTGTTGGGCTTTT 59.057 32.000 0.00 0.00 0.00 2.27
461 462 5.495640 TGTGATTTTTCTTTGTTGGGCTTT 58.504 33.333 0.00 0.00 0.00 3.51
462 463 5.096443 TGTGATTTTTCTTTGTTGGGCTT 57.904 34.783 0.00 0.00 0.00 4.35
463 464 4.751767 TGTGATTTTTCTTTGTTGGGCT 57.248 36.364 0.00 0.00 0.00 5.19
464 465 5.448496 GGTTTGTGATTTTTCTTTGTTGGGC 60.448 40.000 0.00 0.00 0.00 5.36
465 466 5.645497 TGGTTTGTGATTTTTCTTTGTTGGG 59.355 36.000 0.00 0.00 0.00 4.12
466 467 6.675244 GCTGGTTTGTGATTTTTCTTTGTTGG 60.675 38.462 0.00 0.00 0.00 3.77
467 468 6.250089 GCTGGTTTGTGATTTTTCTTTGTTG 58.750 36.000 0.00 0.00 0.00 3.33
468 469 5.063312 CGCTGGTTTGTGATTTTTCTTTGTT 59.937 36.000 0.00 0.00 0.00 2.83
469 470 4.566360 CGCTGGTTTGTGATTTTTCTTTGT 59.434 37.500 0.00 0.00 0.00 2.83
470 471 4.803088 TCGCTGGTTTGTGATTTTTCTTTG 59.197 37.500 0.00 0.00 0.00 2.77
471 472 4.803613 GTCGCTGGTTTGTGATTTTTCTTT 59.196 37.500 0.00 0.00 0.00 2.52
472 473 4.359706 GTCGCTGGTTTGTGATTTTTCTT 58.640 39.130 0.00 0.00 0.00 2.52
473 474 3.548014 CGTCGCTGGTTTGTGATTTTTCT 60.548 43.478 0.00 0.00 0.00 2.52
474 475 2.719046 CGTCGCTGGTTTGTGATTTTTC 59.281 45.455 0.00 0.00 0.00 2.29
475 476 2.356382 TCGTCGCTGGTTTGTGATTTTT 59.644 40.909 0.00 0.00 0.00 1.94
476 477 1.944024 TCGTCGCTGGTTTGTGATTTT 59.056 42.857 0.00 0.00 0.00 1.82
477 478 1.531149 CTCGTCGCTGGTTTGTGATTT 59.469 47.619 0.00 0.00 0.00 2.17
478 479 1.148310 CTCGTCGCTGGTTTGTGATT 58.852 50.000 0.00 0.00 0.00 2.57
479 480 0.317160 TCTCGTCGCTGGTTTGTGAT 59.683 50.000 0.00 0.00 0.00 3.06
480 481 0.318699 CTCTCGTCGCTGGTTTGTGA 60.319 55.000 0.00 0.00 0.00 3.58
481 482 1.891060 GCTCTCGTCGCTGGTTTGTG 61.891 60.000 0.00 0.00 0.00 3.33
482 483 1.664965 GCTCTCGTCGCTGGTTTGT 60.665 57.895 0.00 0.00 0.00 2.83
483 484 2.383527 GGCTCTCGTCGCTGGTTTG 61.384 63.158 0.00 0.00 0.00 2.93
484 485 2.048127 GGCTCTCGTCGCTGGTTT 60.048 61.111 0.00 0.00 0.00 3.27
485 486 4.421479 CGGCTCTCGTCGCTGGTT 62.421 66.667 0.00 0.00 0.00 3.67
487 488 4.838486 GTCGGCTCTCGTCGCTGG 62.838 72.222 0.00 0.00 38.35 4.85
488 489 3.805307 AGTCGGCTCTCGTCGCTG 61.805 66.667 0.00 0.00 38.35 5.18
489 490 3.805307 CAGTCGGCTCTCGTCGCT 61.805 66.667 0.00 0.00 38.35 4.93
490 491 3.726631 CTCAGTCGGCTCTCGTCGC 62.727 68.421 0.00 0.00 38.35 5.19
491 492 2.299294 GACTCAGTCGGCTCTCGTCG 62.299 65.000 0.00 0.00 40.22 5.12
492 493 1.022451 AGACTCAGTCGGCTCTCGTC 61.022 60.000 0.00 0.00 37.67 4.20
493 494 0.606944 AAGACTCAGTCGGCTCTCGT 60.607 55.000 0.00 0.00 37.67 4.18
494 495 1.370609 TAAGACTCAGTCGGCTCTCG 58.629 55.000 0.00 0.00 37.67 4.04
495 496 3.057456 TGTTTAAGACTCAGTCGGCTCTC 60.057 47.826 0.00 0.00 37.67 3.20
496 497 2.891580 TGTTTAAGACTCAGTCGGCTCT 59.108 45.455 0.00 0.00 37.67 4.09
497 498 3.057456 TCTGTTTAAGACTCAGTCGGCTC 60.057 47.826 0.00 0.00 37.67 4.70
498 499 2.891580 TCTGTTTAAGACTCAGTCGGCT 59.108 45.455 0.00 0.00 37.67 5.52
499 500 3.299340 TCTGTTTAAGACTCAGTCGGC 57.701 47.619 0.00 0.00 37.67 5.54
518 519 9.672086 GGCTTTTATTTATTTTGTTTTTGGGTC 57.328 29.630 0.00 0.00 0.00 4.46
519 520 9.415008 AGGCTTTTATTTATTTTGTTTTTGGGT 57.585 25.926 0.00 0.00 0.00 4.51
532 533 9.771534 CTGAGCTAGACTTAGGCTTTTATTTAT 57.228 33.333 0.00 0.00 36.37 1.40
533 534 8.759782 ACTGAGCTAGACTTAGGCTTTTATTTA 58.240 33.333 0.00 0.00 36.32 1.40
534 535 7.625469 ACTGAGCTAGACTTAGGCTTTTATTT 58.375 34.615 0.00 0.00 36.32 1.40
535 536 7.189079 ACTGAGCTAGACTTAGGCTTTTATT 57.811 36.000 0.00 0.00 36.32 1.40
536 537 6.800072 ACTGAGCTAGACTTAGGCTTTTAT 57.200 37.500 0.00 0.00 36.32 1.40
537 538 6.607004 AACTGAGCTAGACTTAGGCTTTTA 57.393 37.500 0.00 0.00 36.32 1.52
538 539 5.491323 AACTGAGCTAGACTTAGGCTTTT 57.509 39.130 0.00 0.00 36.32 2.27
539 540 6.607004 TTAACTGAGCTAGACTTAGGCTTT 57.393 37.500 0.00 0.00 36.32 3.51
540 541 6.399743 GTTTAACTGAGCTAGACTTAGGCTT 58.600 40.000 0.00 0.00 36.32 4.35
541 542 5.393243 CGTTTAACTGAGCTAGACTTAGGCT 60.393 44.000 0.00 0.00 36.32 4.58
542 543 4.799428 CGTTTAACTGAGCTAGACTTAGGC 59.201 45.833 0.00 0.00 36.32 3.93
543 544 5.125097 TCCGTTTAACTGAGCTAGACTTAGG 59.875 44.000 0.00 0.00 36.32 2.69
544 545 6.192234 TCCGTTTAACTGAGCTAGACTTAG 57.808 41.667 0.00 0.00 37.99 2.18
545 546 6.579666 TTCCGTTTAACTGAGCTAGACTTA 57.420 37.500 0.00 0.00 0.00 2.24
546 547 5.464030 TTCCGTTTAACTGAGCTAGACTT 57.536 39.130 0.00 0.00 0.00 3.01
547 548 5.221382 TGTTTCCGTTTAACTGAGCTAGACT 60.221 40.000 0.00 0.00 0.00 3.24
548 549 4.986659 TGTTTCCGTTTAACTGAGCTAGAC 59.013 41.667 0.00 0.00 0.00 2.59
549 550 5.204409 TGTTTCCGTTTAACTGAGCTAGA 57.796 39.130 0.00 0.00 0.00 2.43
550 551 5.917541 TTGTTTCCGTTTAACTGAGCTAG 57.082 39.130 0.00 0.00 0.00 3.42
551 552 6.680874 TTTTGTTTCCGTTTAACTGAGCTA 57.319 33.333 0.00 0.00 0.00 3.32
552 553 5.570234 TTTTGTTTCCGTTTAACTGAGCT 57.430 34.783 0.00 0.00 0.00 4.09
573 574 4.985413 CACATGTCTGTGTCTGTGTTTTT 58.015 39.130 0.00 0.00 46.33 1.94
574 575 4.621068 CACATGTCTGTGTCTGTGTTTT 57.379 40.909 0.00 0.00 46.33 2.43
585 586 1.001746 CTGTCCAGAGCACATGTCTGT 59.998 52.381 11.00 1.76 39.98 3.41
586 587 1.723220 CTGTCCAGAGCACATGTCTG 58.277 55.000 0.00 0.04 41.08 3.51
587 588 0.036577 GCTGTCCAGAGCACATGTCT 60.037 55.000 0.00 0.00 38.95 3.41
588 589 1.023513 GGCTGTCCAGAGCACATGTC 61.024 60.000 0.00 0.00 41.08 3.06
589 590 1.002868 GGCTGTCCAGAGCACATGT 60.003 57.895 0.00 0.00 41.08 3.21
590 591 1.002990 TGGCTGTCCAGAGCACATG 60.003 57.895 0.00 0.00 41.08 3.21
591 592 1.002868 GTGGCTGTCCAGAGCACAT 60.003 57.895 0.00 0.00 44.48 3.21
592 593 1.981951 TTGTGGCTGTCCAGAGCACA 61.982 55.000 0.00 0.00 44.48 4.57
593 594 0.607489 ATTGTGGCTGTCCAGAGCAC 60.607 55.000 0.00 0.00 44.48 4.40
594 595 0.321919 GATTGTGGCTGTCCAGAGCA 60.322 55.000 0.00 0.00 44.48 4.26
595 596 1.364626 CGATTGTGGCTGTCCAGAGC 61.365 60.000 0.00 0.00 44.48 4.09
596 597 0.247460 TCGATTGTGGCTGTCCAGAG 59.753 55.000 0.00 0.00 44.48 3.35
597 598 0.684535 TTCGATTGTGGCTGTCCAGA 59.315 50.000 0.00 0.00 44.48 3.86
598 599 0.798776 GTTCGATTGTGGCTGTCCAG 59.201 55.000 0.00 0.00 44.48 3.86
599 600 0.948623 CGTTCGATTGTGGCTGTCCA 60.949 55.000 0.00 0.00 40.85 4.02
600 601 1.635663 CCGTTCGATTGTGGCTGTCC 61.636 60.000 0.00 0.00 0.00 4.02
601 602 0.669318 TCCGTTCGATTGTGGCTGTC 60.669 55.000 0.00 0.00 0.00 3.51
602 603 0.670546 CTCCGTTCGATTGTGGCTGT 60.671 55.000 0.00 0.00 0.00 4.40
603 604 0.670546 ACTCCGTTCGATTGTGGCTG 60.671 55.000 0.00 0.00 0.00 4.85
604 605 0.389948 GACTCCGTTCGATTGTGGCT 60.390 55.000 0.00 0.00 0.00 4.75
605 606 1.683790 CGACTCCGTTCGATTGTGGC 61.684 60.000 0.00 0.00 41.78 5.01
606 607 0.109458 TCGACTCCGTTCGATTGTGG 60.109 55.000 0.00 0.00 43.01 4.17
607 608 3.394800 TCGACTCCGTTCGATTGTG 57.605 52.632 0.00 0.00 43.01 3.33
612 613 0.671472 TAGCAGTCGACTCCGTTCGA 60.671 55.000 16.96 0.00 45.62 3.71
613 614 0.167470 TTAGCAGTCGACTCCGTTCG 59.833 55.000 16.96 4.36 40.53 3.95
614 615 2.563471 ATTAGCAGTCGACTCCGTTC 57.437 50.000 16.96 2.76 37.05 3.95
615 616 2.492484 AGAATTAGCAGTCGACTCCGTT 59.508 45.455 16.96 6.28 37.05 4.44
616 617 2.093106 AGAATTAGCAGTCGACTCCGT 58.907 47.619 16.96 5.56 37.05 4.69
617 618 2.722071 GAGAATTAGCAGTCGACTCCG 58.278 52.381 16.96 6.84 37.07 4.63
618 619 2.541999 CCGAGAATTAGCAGTCGACTCC 60.542 54.545 16.96 6.78 34.28 3.85
619 620 2.097791 ACCGAGAATTAGCAGTCGACTC 59.902 50.000 16.96 10.84 34.28 3.36
620 621 2.093106 ACCGAGAATTAGCAGTCGACT 58.907 47.619 13.58 13.58 34.28 4.18
621 622 2.563471 ACCGAGAATTAGCAGTCGAC 57.437 50.000 7.70 7.70 34.28 4.20
622 623 3.276857 ACTACCGAGAATTAGCAGTCGA 58.723 45.455 0.00 0.00 34.28 4.20
623 624 3.312973 AGACTACCGAGAATTAGCAGTCG 59.687 47.826 0.00 0.00 36.81 4.18
717 718 2.102588 TCTTATCTTAAGCTGGCCGACC 59.897 50.000 0.00 0.00 0.00 4.79
748 749 2.551887 TCGTGACCCATTCATGTTTGTG 59.448 45.455 0.00 0.00 41.48 3.33
804 807 3.748868 TCGACTCTTGAGTGAAGATCG 57.251 47.619 8.11 13.69 40.06 3.69
1266 1348 2.683933 GCGAGGGAGGTTCCTGGA 60.684 66.667 0.00 0.00 37.25 3.86
1300 1382 0.463620 GAGCCAAGATCGAGCTCCTT 59.536 55.000 18.46 2.82 45.83 3.36
1311 1393 3.011566 TGAAAGTTGTTGGAGCCAAGA 57.988 42.857 1.41 0.00 36.52 3.02
1360 1442 2.075566 TGAGGTTCTGGCACCCACA 61.076 57.895 0.00 0.00 37.58 4.17
1501 1583 6.998968 TTTCTTGCATTGAAACAACCATTT 57.001 29.167 10.21 0.00 0.00 2.32
1511 1593 4.800249 GCACCTCCATTTTCTTGCATTGAA 60.800 41.667 0.00 0.00 0.00 2.69
1692 1774 1.904287 TGTTAGCGAAAACCATGCCT 58.096 45.000 0.00 0.00 0.00 4.75
1795 1877 2.842496 TCTTGCTCCCAGATCTCACAAT 59.158 45.455 0.00 0.00 0.00 2.71
2379 2557 4.274147 CTTGACTCCTCAAGTAGCCTAGA 58.726 47.826 0.00 0.00 45.94 2.43
2399 2579 2.512896 AGCCTCAACATCATCCCATCTT 59.487 45.455 0.00 0.00 0.00 2.40
2405 2585 4.702131 ACTACAAAAGCCTCAACATCATCC 59.298 41.667 0.00 0.00 0.00 3.51
2418 2598 4.723248 AGCAGCGAAAATACTACAAAAGC 58.277 39.130 0.00 0.00 0.00 3.51
2570 2754 3.389329 TGGCATACAAACCAAACCACAAT 59.611 39.130 0.00 0.00 31.46 2.71
2647 3167 2.512705 AGGAGTATAATCGACCGGACC 58.487 52.381 9.46 0.00 0.00 4.46
2651 3171 3.568853 ACCTCAAGGAGTATAATCGACCG 59.431 47.826 2.30 0.00 38.94 4.79
2654 3174 5.299531 CACTCACCTCAAGGAGTATAATCGA 59.700 44.000 2.30 0.00 42.22 3.59
2675 3195 2.629656 GCCATTGCGAGTTGCCACT 61.630 57.895 0.00 0.00 45.60 4.00
2686 3207 0.458197 TATGCTTGCGTTGCCATTGC 60.458 50.000 0.00 0.00 38.26 3.56
2735 3256 7.061789 GGATCAAAGCAAAGTATAAAACAACGG 59.938 37.037 0.00 0.00 0.00 4.44
2736 3257 7.593273 TGGATCAAAGCAAAGTATAAAACAACG 59.407 33.333 0.00 0.00 0.00 4.10
2771 3292 0.599204 CTGCTGCTGCCTTGTTTTGG 60.599 55.000 13.47 0.00 38.71 3.28
2783 3304 3.657059 CGTGCTGTTGCTGCTGCT 61.657 61.111 17.00 0.00 40.48 4.24
2786 3307 2.974698 GGACGTGCTGTTGCTGCT 60.975 61.111 0.00 0.00 40.48 4.24
2793 3320 0.392706 TTGAGACATGGACGTGCTGT 59.607 50.000 8.99 10.09 0.00 4.40
2805 3332 8.820831 AGAAGAAGAGGAAGAATATTTGAGACA 58.179 33.333 0.00 0.00 0.00 3.41
2808 3335 9.889128 AGAAGAAGAAGAGGAAGAATATTTGAG 57.111 33.333 0.00 0.00 0.00 3.02
2822 3349 9.196552 GAAGAAGAAGAAGAAGAAGAAGAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
2850 3428 0.827368 TTGGACTGGTTTGGTTTGCC 59.173 50.000 0.00 0.00 0.00 4.52
2895 3473 4.142578 CCTCTCGAGGTCGTATGAATATGG 60.143 50.000 13.56 0.00 43.61 2.74
2924 3502 0.095245 CATTCCTGCGTACGTTGCTG 59.905 55.000 17.90 11.81 0.00 4.41
2972 3550 1.806542 CTTGTACTGATGTTTGCGGCT 59.193 47.619 0.00 0.00 0.00 5.52
3030 3608 2.592993 GGCCACACAGCTGTCCCTA 61.593 63.158 18.64 0.00 0.00 3.53
3046 3624 2.703409 CGTGCTGCATAAGACGGC 59.297 61.111 5.27 0.00 39.96 5.68
3047 3625 2.703409 GCGTGCTGCATAAGACGG 59.297 61.111 5.27 0.00 45.45 4.79
3072 3650 1.511305 GATGACGGCGAGGAAGACA 59.489 57.895 16.62 2.21 0.00 3.41
3076 3654 2.771639 CGAGGATGACGGCGAGGAA 61.772 63.158 16.62 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.