Multiple sequence alignment - TraesCS5D01G563200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G563200 chr5D 100.000 2669 0 0 1 2669 562414034 562411366 0.000000e+00 4929.0
1 TraesCS5D01G563200 chr5D 86.341 410 51 2 16 425 561803465 561803061 2.440000e-120 442.0
2 TraesCS5D01G563200 chr5D 74.773 440 77 21 5 418 562431100 562430669 1.640000e-37 167.0
3 TraesCS5D01G563200 chr5D 83.735 166 17 6 410 566 561802960 561802796 5.950000e-32 148.0
4 TraesCS5D01G563200 chr5D 95.181 83 2 2 1812 1893 476724227 476724146 2.160000e-26 130.0
5 TraesCS5D01G563200 chr5D 100.000 31 0 0 683 713 243364903 243364933 1.030000e-04 58.4
6 TraesCS5D01G563200 chr5B 89.486 875 38 27 903 1741 712873969 712873113 0.000000e+00 1057.0
7 TraesCS5D01G563200 chr5B 86.585 410 50 2 16 425 711714834 711714430 5.240000e-122 448.0
8 TraesCS5D01G563200 chr5B 93.269 208 12 2 15 221 712874280 712874074 3.340000e-79 305.0
9 TraesCS5D01G563200 chr5B 89.474 152 16 0 5 156 712889536 712889385 2.710000e-45 193.0
10 TraesCS5D01G563200 chr5B 84.239 184 22 3 2286 2465 712868833 712868653 3.530000e-39 172.0
11 TraesCS5D01G563200 chr5B 84.337 166 16 6 410 566 711714329 711714165 1.280000e-33 154.0
12 TraesCS5D01G563200 chr5B 95.122 82 3 1 1809 1889 45040182 45040263 7.760000e-26 128.0
13 TraesCS5D01G563200 chr5B 98.214 56 1 0 1755 1810 469125872 469125927 6.080000e-17 99.0
14 TraesCS5D01G563200 chr5B 93.651 63 4 0 1748 1810 622630492 622630554 7.870000e-16 95.3
15 TraesCS5D01G563200 chr5B 96.364 55 2 0 2508 2562 712868657 712868603 1.020000e-14 91.6
16 TraesCS5D01G563200 chr5B 100.000 31 0 0 683 713 587798082 587798052 1.030000e-04 58.4
17 TraesCS5D01G563200 chr5B 94.444 36 1 1 683 717 566119901 566119866 1.000000e-03 54.7
18 TraesCS5D01G563200 chr7B 93.955 579 16 7 853 1424 230466 231032 0.000000e+00 857.0
19 TraesCS5D01G563200 chr7B 91.045 603 28 7 1 580 229759 230358 0.000000e+00 791.0
20 TraesCS5D01G563200 chr7B 86.506 415 51 2 5 419 129206 129615 4.050000e-123 451.0
21 TraesCS5D01G563200 chr7B 86.585 410 50 2 10 419 1154870 1155274 5.240000e-122 448.0
22 TraesCS5D01G563200 chr7B 86.024 415 53 2 5 419 1021232 1021641 8.770000e-120 440.0
23 TraesCS5D01G563200 chr7B 92.763 304 14 4 1453 1749 231028 231330 1.470000e-117 433.0
24 TraesCS5D01G563200 chr7B 84.578 415 23 8 2286 2669 232460 232864 9.020000e-100 374.0
25 TraesCS5D01G563200 chr7B 74.715 439 77 21 5 417 223096 223526 5.910000e-37 165.0
26 TraesCS5D01G563200 chr7B 81.977 172 20 7 404 566 1155375 1155544 4.630000e-28 135.0
27 TraesCS5D01G563200 chr7B 92.308 91 4 3 1812 1901 591210003 591209915 2.790000e-25 126.0
28 TraesCS5D01G563200 chr7B 92.683 41 2 1 683 723 489419040 489419079 1.030000e-04 58.4
29 TraesCS5D01G563200 chr7D 96.296 81 2 1 1811 1890 568184334 568184254 6.000000e-27 132.0
30 TraesCS5D01G563200 chr7D 88.889 72 7 1 2118 2189 6134939 6135009 1.320000e-13 87.9
31 TraesCS5D01G563200 chr7D 100.000 32 0 0 683 714 529685498 529685529 2.870000e-05 60.2
32 TraesCS5D01G563200 chr6B 95.238 84 2 2 1812 1893 514727244 514727161 6.000000e-27 132.0
33 TraesCS5D01G563200 chr6B 93.023 86 4 2 1812 1896 31685194 31685278 1.000000e-24 124.0
34 TraesCS5D01G563200 chr4B 96.250 80 2 1 1812 1890 21188243 21188164 2.160000e-26 130.0
35 TraesCS5D01G563200 chr4B 92.308 91 3 4 1812 1899 20742424 20742513 2.790000e-25 126.0
36 TraesCS5D01G563200 chr4B 93.750 64 3 1 1748 1810 87011415 87011478 7.870000e-16 95.3
37 TraesCS5D01G563200 chr6A 92.308 91 5 2 1812 1900 70934005 70933915 7.760000e-26 128.0
38 TraesCS5D01G563200 chr2D 96.610 59 2 0 1752 1810 291591717 291591775 6.080000e-17 99.0
39 TraesCS5D01G563200 chr3B 95.082 61 3 0 1750 1810 807957986 807957926 2.190000e-16 97.1
40 TraesCS5D01G563200 chr3B 97.059 34 1 0 683 716 217992829 217992862 1.030000e-04 58.4
41 TraesCS5D01G563200 chr1D 96.552 58 2 0 1753 1810 392560972 392561029 2.190000e-16 97.1
42 TraesCS5D01G563200 chr1D 95.000 60 3 0 1751 1810 19774678 19774737 7.870000e-16 95.3
43 TraesCS5D01G563200 chr1D 100.000 29 0 0 684 712 433861409 433861437 1.000000e-03 54.7
44 TraesCS5D01G563200 chr1B 93.651 63 4 0 1748 1810 283119063 283119125 7.870000e-16 95.3
45 TraesCS5D01G563200 chr1B 88.158 76 8 1 1735 1810 476016004 476016078 3.660000e-14 89.8
46 TraesCS5D01G563200 chr1B 100.000 30 0 0 683 712 292206360 292206389 3.710000e-04 56.5
47 TraesCS5D01G563200 chr1B 100.000 30 0 0 683 712 328883098 328883069 3.710000e-04 56.5
48 TraesCS5D01G563200 chr1B 97.059 34 0 1 683 715 676270067 676270100 3.710000e-04 56.5
49 TraesCS5D01G563200 chr1A 85.507 69 10 0 2121 2189 549591676 549591744 3.690000e-09 73.1
50 TraesCS5D01G563200 chr1A 100.000 33 0 0 683 715 13420682 13420650 7.980000e-06 62.1
51 TraesCS5D01G563200 chr7A 90.196 51 5 0 2139 2189 103149106 103149056 1.710000e-07 67.6
52 TraesCS5D01G563200 chrUn 100.000 30 0 0 683 712 317331234 317331263 3.710000e-04 56.5
53 TraesCS5D01G563200 chrUn 100.000 30 0 0 683 712 349067416 349067387 3.710000e-04 56.5
54 TraesCS5D01G563200 chr4D 100.000 30 0 0 683 712 14854300 14854329 3.710000e-04 56.5
55 TraesCS5D01G563200 chr4D 100.000 30 0 0 683 712 16450260 16450231 3.710000e-04 56.5
56 TraesCS5D01G563200 chr4D 97.059 34 0 1 683 715 268069060 268069093 3.710000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G563200 chr5D 562411366 562414034 2668 True 4929.00 4929 100.00000 1 2669 1 chr5D.!!$R2 2668
1 TraesCS5D01G563200 chr5D 561802796 561803465 669 True 295.00 442 85.03800 16 566 2 chr5D.!!$R4 550
2 TraesCS5D01G563200 chr5B 712873113 712874280 1167 True 681.00 1057 91.37750 15 1741 2 chr5B.!!$R6 1726
3 TraesCS5D01G563200 chr5B 711714165 711714834 669 True 301.00 448 85.46100 16 566 2 chr5B.!!$R4 550
4 TraesCS5D01G563200 chr7B 229759 232864 3105 False 613.75 857 90.58525 1 2669 4 chr7B.!!$F5 2668
5 TraesCS5D01G563200 chr7B 1154870 1155544 674 False 291.50 448 84.28100 10 566 2 chr7B.!!$F6 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.179067 GTATCCGGGAATGCCAACGA 60.179 55.0 0.0 0.0 35.15 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2200 0.104487 AGCTGGATCTCGTGCTCATG 59.896 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.619654 TCACTGGGCATGGTTTTCAG 58.380 50.000 0.00 0.00 0.00 3.02
114 115 4.711355 CCAAATGTCATAACAGGGACCAAT 59.289 41.667 0.00 0.00 39.20 3.16
158 159 2.687935 ACAATGTTGTATCCGGGAATGC 59.312 45.455 0.00 0.00 40.16 3.56
163 164 0.462937 TGTATCCGGGAATGCCAACG 60.463 55.000 0.00 0.00 35.15 4.10
164 165 0.179067 GTATCCGGGAATGCCAACGA 60.179 55.000 0.00 0.00 35.15 3.85
370 371 4.442706 GAATCAACCATGTCGTATCTGGT 58.557 43.478 0.00 0.00 45.08 4.00
434 572 6.996879 AGGAGTTGAATGATATGATGTTGAGG 59.003 38.462 0.00 0.00 0.00 3.86
446 584 9.277783 GATATGATGTTGAGGCTTTGTAGTATT 57.722 33.333 0.00 0.00 0.00 1.89
496 635 9.914131 TGAGATGATGTTCGATAAATAAGGTAG 57.086 33.333 0.00 0.00 0.00 3.18
593 738 8.455903 ACATGTATTGTACTATGTACCTACGT 57.544 34.615 0.00 0.00 36.57 3.57
594 739 8.562892 ACATGTATTGTACTATGTACCTACGTC 58.437 37.037 0.00 0.00 36.57 4.34
595 740 7.496529 TGTATTGTACTATGTACCTACGTCC 57.503 40.000 0.00 0.00 0.00 4.79
596 741 6.486657 TGTATTGTACTATGTACCTACGTCCC 59.513 42.308 0.00 0.00 0.00 4.46
598 743 2.717639 ACTATGTACCTACGTCCCGT 57.282 50.000 0.00 0.00 44.35 5.28
600 745 4.150897 ACTATGTACCTACGTCCCGTAA 57.849 45.455 0.00 0.00 41.82 3.18
601 746 4.718961 ACTATGTACCTACGTCCCGTAAT 58.281 43.478 0.00 0.00 41.82 1.89
604 749 7.620880 ACTATGTACCTACGTCCCGTAATATA 58.379 38.462 0.00 0.00 41.82 0.86
606 751 6.801539 TGTACCTACGTCCCGTAATATAAG 57.198 41.667 0.00 0.00 41.82 1.73
607 752 6.530120 TGTACCTACGTCCCGTAATATAAGA 58.470 40.000 0.00 0.00 41.82 2.10
614 759 6.573617 CGTCCCGTAATATAAGACGTTTTT 57.426 37.500 0.00 0.00 43.89 1.94
662 813 9.672673 AAAATATCTTATATCGTGGGATGAAGG 57.327 33.333 0.00 0.00 34.00 3.46
665 816 5.394738 TCTTATATCGTGGGATGAAGGAGT 58.605 41.667 0.00 0.00 34.00 3.85
667 818 7.008332 TCTTATATCGTGGGATGAAGGAGTAA 58.992 38.462 0.00 0.00 34.00 2.24
668 819 7.674348 TCTTATATCGTGGGATGAAGGAGTAAT 59.326 37.037 0.00 0.00 34.00 1.89
671 822 5.468540 TCGTGGGATGAAGGAGTAATATG 57.531 43.478 0.00 0.00 0.00 1.78
672 823 4.899457 TCGTGGGATGAAGGAGTAATATGT 59.101 41.667 0.00 0.00 0.00 2.29
680 831 7.665559 GGATGAAGGAGTAATATGTTATGCCAA 59.334 37.037 6.24 0.00 0.00 4.52
682 833 7.573710 TGAAGGAGTAATATGTTATGCCAAGT 58.426 34.615 6.24 0.00 0.00 3.16
683 834 8.052748 TGAAGGAGTAATATGTTATGCCAAGTT 58.947 33.333 6.24 0.00 0.00 2.66
684 835 7.807977 AGGAGTAATATGTTATGCCAAGTTG 57.192 36.000 0.00 0.00 0.00 3.16
685 836 6.772716 AGGAGTAATATGTTATGCCAAGTTGG 59.227 38.462 18.17 18.17 41.55 3.77
686 837 6.770785 GGAGTAATATGTTATGCCAAGTTGGA 59.229 38.462 26.52 11.04 40.96 3.53
687 838 7.255139 GGAGTAATATGTTATGCCAAGTTGGAC 60.255 40.741 26.52 16.53 40.96 4.02
688 839 5.499139 AATATGTTATGCCAAGTTGGACG 57.501 39.130 26.52 0.00 40.96 4.79
689 840 2.552599 TGTTATGCCAAGTTGGACGA 57.447 45.000 26.52 8.58 40.96 4.20
690 841 2.422597 TGTTATGCCAAGTTGGACGAG 58.577 47.619 26.52 0.00 40.96 4.18
691 842 2.224426 TGTTATGCCAAGTTGGACGAGT 60.224 45.455 26.52 7.96 40.96 4.18
692 843 3.007074 TGTTATGCCAAGTTGGACGAGTA 59.993 43.478 26.52 7.02 40.96 2.59
693 844 2.851263 ATGCCAAGTTGGACGAGTAA 57.149 45.000 26.52 1.37 40.96 2.24
694 845 2.851263 TGCCAAGTTGGACGAGTAAT 57.149 45.000 26.52 0.00 40.96 1.89
695 846 3.134574 TGCCAAGTTGGACGAGTAATT 57.865 42.857 26.52 0.00 40.96 1.40
696 847 3.071479 TGCCAAGTTGGACGAGTAATTC 58.929 45.455 26.52 4.04 40.96 2.17
697 848 2.418976 GCCAAGTTGGACGAGTAATTCC 59.581 50.000 26.52 0.00 40.96 3.01
698 849 3.670625 CCAAGTTGGACGAGTAATTCCA 58.329 45.455 17.60 0.00 40.96 3.53
699 850 4.069304 CCAAGTTGGACGAGTAATTCCAA 58.931 43.478 17.60 0.00 40.96 3.53
700 851 4.517453 CCAAGTTGGACGAGTAATTCCAAA 59.483 41.667 17.60 0.00 42.94 3.28
701 852 5.449304 CAAGTTGGACGAGTAATTCCAAAC 58.551 41.667 4.65 0.95 42.94 2.93
702 853 3.744426 AGTTGGACGAGTAATTCCAAACG 59.256 43.478 4.65 0.00 42.94 3.60
703 854 2.690786 TGGACGAGTAATTCCAAACGG 58.309 47.619 0.00 0.00 0.00 4.44
704 855 2.299582 TGGACGAGTAATTCCAAACGGA 59.700 45.455 0.00 0.00 0.00 4.69
705 856 2.928116 GGACGAGTAATTCCAAACGGAG 59.072 50.000 0.00 0.00 32.88 4.63
706 857 2.928116 GACGAGTAATTCCAAACGGAGG 59.072 50.000 0.00 0.00 32.88 4.30
707 858 2.277084 CGAGTAATTCCAAACGGAGGG 58.723 52.381 0.00 0.00 32.88 4.30
708 859 2.093869 CGAGTAATTCCAAACGGAGGGA 60.094 50.000 0.00 0.00 32.88 4.20
709 860 3.532542 GAGTAATTCCAAACGGAGGGAG 58.467 50.000 0.00 0.00 34.02 4.30
710 861 2.910977 AGTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
711 862 4.098894 AGTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
712 863 4.720273 AGTAATTCCAAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 34.02 2.12
713 864 5.901276 AGTAATTCCAAACGGAGGGAGTATA 59.099 40.000 0.00 0.00 34.02 1.47
714 865 5.906772 AATTCCAAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 34.02 0.86
715 866 4.682778 TTCCAAACGGAGGGAGTATATG 57.317 45.455 0.00 0.00 34.02 1.78
716 867 2.367567 TCCAAACGGAGGGAGTATATGC 59.632 50.000 0.00 0.00 0.00 3.14
717 868 2.550208 CCAAACGGAGGGAGTATATGCC 60.550 54.545 0.00 0.00 40.48 4.40
718 869 2.097110 AACGGAGGGAGTATATGCCA 57.903 50.000 0.00 0.00 43.31 4.92
719 870 2.097110 ACGGAGGGAGTATATGCCAA 57.903 50.000 0.00 0.00 43.31 4.52
720 871 1.971357 ACGGAGGGAGTATATGCCAAG 59.029 52.381 0.00 0.00 43.31 3.61
721 872 1.971357 CGGAGGGAGTATATGCCAAGT 59.029 52.381 0.00 0.00 43.31 3.16
722 873 2.368875 CGGAGGGAGTATATGCCAAGTT 59.631 50.000 0.00 0.00 43.31 2.66
723 874 3.744660 GGAGGGAGTATATGCCAAGTTG 58.255 50.000 0.00 0.00 43.31 3.16
724 875 3.136626 GGAGGGAGTATATGCCAAGTTGT 59.863 47.826 1.45 0.00 43.31 3.32
725 876 4.347000 GGAGGGAGTATATGCCAAGTTGTA 59.653 45.833 1.45 0.00 43.31 2.41
726 877 5.013183 GGAGGGAGTATATGCCAAGTTGTAT 59.987 44.000 1.45 0.00 43.31 2.29
727 878 6.465894 GGAGGGAGTATATGCCAAGTTGTATT 60.466 42.308 1.45 0.00 43.31 1.89
728 879 6.299141 AGGGAGTATATGCCAAGTTGTATTG 58.701 40.000 1.45 0.00 43.31 1.90
729 880 6.062095 GGGAGTATATGCCAAGTTGTATTGT 58.938 40.000 1.45 0.00 39.77 2.71
730 881 6.017109 GGGAGTATATGCCAAGTTGTATTGTG 60.017 42.308 1.45 0.00 39.77 3.33
731 882 6.542370 GGAGTATATGCCAAGTTGTATTGTGT 59.458 38.462 1.45 0.00 0.00 3.72
732 883 7.713507 GGAGTATATGCCAAGTTGTATTGTGTA 59.286 37.037 1.45 0.00 0.00 2.90
733 884 8.433421 AGTATATGCCAAGTTGTATTGTGTAC 57.567 34.615 1.45 0.00 0.00 2.90
734 885 8.265055 AGTATATGCCAAGTTGTATTGTGTACT 58.735 33.333 1.45 0.00 0.00 2.73
735 886 9.537192 GTATATGCCAAGTTGTATTGTGTACTA 57.463 33.333 1.45 0.00 0.00 1.82
736 887 6.737254 ATGCCAAGTTGTATTGTGTACTAC 57.263 37.500 1.45 0.00 0.00 2.73
737 888 5.860611 TGCCAAGTTGTATTGTGTACTACT 58.139 37.500 1.45 0.00 35.62 2.57
738 889 5.699001 TGCCAAGTTGTATTGTGTACTACTG 59.301 40.000 1.45 0.41 34.67 2.74
739 890 5.121768 GCCAAGTTGTATTGTGTACTACTGG 59.878 44.000 1.45 7.84 34.67 4.00
740 891 6.460781 CCAAGTTGTATTGTGTACTACTGGA 58.539 40.000 1.45 0.00 34.67 3.86
741 892 6.590292 CCAAGTTGTATTGTGTACTACTGGAG 59.410 42.308 1.45 0.00 34.67 3.86
742 893 6.282199 AGTTGTATTGTGTACTACTGGAGG 57.718 41.667 0.00 0.00 33.56 4.30
743 894 5.778750 AGTTGTATTGTGTACTACTGGAGGT 59.221 40.000 0.00 0.00 33.56 3.85
744 895 5.654603 TGTATTGTGTACTACTGGAGGTG 57.345 43.478 0.00 0.00 0.00 4.00
745 896 5.326900 TGTATTGTGTACTACTGGAGGTGA 58.673 41.667 0.00 0.00 0.00 4.02
746 897 5.417894 TGTATTGTGTACTACTGGAGGTGAG 59.582 44.000 0.00 0.00 0.00 3.51
747 898 3.520691 TGTGTACTACTGGAGGTGAGT 57.479 47.619 0.00 0.00 0.00 3.41
748 899 3.154710 TGTGTACTACTGGAGGTGAGTG 58.845 50.000 0.00 0.00 0.00 3.51
749 900 2.492484 GTGTACTACTGGAGGTGAGTGG 59.508 54.545 0.00 0.00 0.00 4.00
750 901 2.109480 TGTACTACTGGAGGTGAGTGGT 59.891 50.000 0.00 0.00 38.54 4.16
751 902 2.400467 ACTACTGGAGGTGAGTGGTT 57.600 50.000 0.00 0.00 31.64 3.67
752 903 2.690840 ACTACTGGAGGTGAGTGGTTT 58.309 47.619 0.00 0.00 31.64 3.27
753 904 2.368875 ACTACTGGAGGTGAGTGGTTTG 59.631 50.000 0.00 0.00 31.64 2.93
754 905 1.213296 ACTGGAGGTGAGTGGTTTGT 58.787 50.000 0.00 0.00 0.00 2.83
755 906 1.564348 ACTGGAGGTGAGTGGTTTGTT 59.436 47.619 0.00 0.00 0.00 2.83
756 907 1.949525 CTGGAGGTGAGTGGTTTGTTG 59.050 52.381 0.00 0.00 0.00 3.33
757 908 1.283613 TGGAGGTGAGTGGTTTGTTGT 59.716 47.619 0.00 0.00 0.00 3.32
758 909 2.291282 TGGAGGTGAGTGGTTTGTTGTT 60.291 45.455 0.00 0.00 0.00 2.83
759 910 3.054287 TGGAGGTGAGTGGTTTGTTGTTA 60.054 43.478 0.00 0.00 0.00 2.41
760 911 3.949113 GGAGGTGAGTGGTTTGTTGTTAA 59.051 43.478 0.00 0.00 0.00 2.01
761 912 4.583073 GGAGGTGAGTGGTTTGTTGTTAAT 59.417 41.667 0.00 0.00 0.00 1.40
762 913 5.068591 GGAGGTGAGTGGTTTGTTGTTAATT 59.931 40.000 0.00 0.00 0.00 1.40
763 914 6.263617 GGAGGTGAGTGGTTTGTTGTTAATTA 59.736 38.462 0.00 0.00 0.00 1.40
764 915 7.039993 GGAGGTGAGTGGTTTGTTGTTAATTAT 60.040 37.037 0.00 0.00 0.00 1.28
765 916 8.245195 AGGTGAGTGGTTTGTTGTTAATTATT 57.755 30.769 0.00 0.00 0.00 1.40
766 917 9.357161 AGGTGAGTGGTTTGTTGTTAATTATTA 57.643 29.630 0.00 0.00 0.00 0.98
790 941 9.926158 TTATTATTTGAGCTCTGATCTCTGATC 57.074 33.333 16.19 0.98 0.00 2.92
791 942 7.600231 TTATTTGAGCTCTGATCTCTGATCT 57.400 36.000 16.19 0.00 0.00 2.75
792 943 5.518848 TTTGAGCTCTGATCTCTGATCTC 57.481 43.478 16.19 9.63 37.49 2.75
793 944 4.442401 TGAGCTCTGATCTCTGATCTCT 57.558 45.455 16.19 2.06 37.70 3.10
794 945 4.139038 TGAGCTCTGATCTCTGATCTCTG 58.861 47.826 16.19 1.06 37.70 3.35
795 946 4.141436 TGAGCTCTGATCTCTGATCTCTGA 60.141 45.833 16.19 4.54 37.70 3.27
796 947 4.395625 AGCTCTGATCTCTGATCTCTGAG 58.604 47.826 14.06 14.06 41.50 3.35
797 948 3.504906 GCTCTGATCTCTGATCTCTGAGG 59.495 52.174 17.32 0.00 40.82 3.86
798 949 3.489355 TCTGATCTCTGATCTCTGAGGC 58.511 50.000 4.59 0.00 40.82 4.70
799 950 2.227149 CTGATCTCTGATCTCTGAGGCG 59.773 54.545 4.59 0.00 40.82 5.52
800 951 2.158696 TGATCTCTGATCTCTGAGGCGA 60.159 50.000 4.59 0.00 40.82 5.54
801 952 1.965935 TCTCTGATCTCTGAGGCGAG 58.034 55.000 4.59 6.07 40.82 5.03
802 953 0.953727 CTCTGATCTCTGAGGCGAGG 59.046 60.000 4.59 0.00 38.00 4.63
803 954 0.548510 TCTGATCTCTGAGGCGAGGA 59.451 55.000 4.59 0.00 0.00 3.71
804 955 0.953727 CTGATCTCTGAGGCGAGGAG 59.046 60.000 4.59 0.00 0.00 3.69
805 956 0.467106 TGATCTCTGAGGCGAGGAGG 60.467 60.000 4.59 0.00 0.00 4.30
813 964 3.737824 GGCGAGGAGGCAATAAGC 58.262 61.111 0.00 0.00 45.92 3.09
833 984 9.573133 AATAAGCATATAAATTATTCCTTGCGC 57.427 29.630 0.00 0.00 34.20 6.09
834 985 5.954335 AGCATATAAATTATTCCTTGCGCC 58.046 37.500 4.18 0.00 34.20 6.53
835 986 5.102313 GCATATAAATTATTCCTTGCGCCC 58.898 41.667 4.18 0.00 0.00 6.13
836 987 5.105756 GCATATAAATTATTCCTTGCGCCCT 60.106 40.000 4.18 0.00 0.00 5.19
837 988 6.555315 CATATAAATTATTCCTTGCGCCCTC 58.445 40.000 4.18 0.00 0.00 4.30
838 989 1.308998 AATTATTCCTTGCGCCCTCG 58.691 50.000 4.18 0.00 39.07 4.63
871 1022 2.149578 CTCTGAGGTGAGGTTTGCTTG 58.850 52.381 0.00 0.00 0.00 4.01
872 1023 0.595095 CTGAGGTGAGGTTTGCTTGC 59.405 55.000 0.00 0.00 0.00 4.01
873 1024 0.183492 TGAGGTGAGGTTTGCTTGCT 59.817 50.000 0.00 0.00 0.00 3.91
888 1039 7.283633 GTTTGCTTGCTTTATACTTTGCTTTC 58.716 34.615 0.00 0.00 0.00 2.62
899 1050 9.639563 TTTATACTTTGCTTTCATCCATCCATA 57.360 29.630 0.00 0.00 0.00 2.74
900 1051 5.841957 ACTTTGCTTTCATCCATCCATAC 57.158 39.130 0.00 0.00 0.00 2.39
929 1085 7.521509 CGTCCACGTCTTAAATATTCTTCTT 57.478 36.000 0.00 0.00 34.11 2.52
970 1126 7.445945 GCAAACCAGTAGATAGATCCAAGTAT 58.554 38.462 0.00 0.00 0.00 2.12
971 1127 7.934120 GCAAACCAGTAGATAGATCCAAGTATT 59.066 37.037 0.00 0.00 0.00 1.89
1191 1360 3.423154 GGCGTCGCCCTCTTTGTG 61.423 66.667 26.23 0.00 44.06 3.33
1424 1644 2.280389 CACCATCTCCATCGCCGG 60.280 66.667 0.00 0.00 0.00 6.13
1425 1645 4.241555 ACCATCTCCATCGCCGGC 62.242 66.667 19.07 19.07 0.00 6.13
1427 1647 4.592192 CATCTCCATCGCCGGCGT 62.592 66.667 44.16 30.06 40.74 5.68
1428 1648 4.592192 ATCTCCATCGCCGGCGTG 62.592 66.667 44.16 36.79 40.74 5.34
1488 1708 3.764466 CACTCCTTCTCCGCCGCT 61.764 66.667 0.00 0.00 0.00 5.52
1558 1778 1.374758 CGGTTCAGAGTCACCAGCC 60.375 63.158 0.00 0.00 31.84 4.85
1702 1936 9.875691 TGACTCATTACGTACTTACTCTAGTAA 57.124 33.333 0.00 2.76 38.10 2.24
1749 1983 6.729187 AGCTCGATCCATTTTTATTTGCTAC 58.271 36.000 0.00 0.00 0.00 3.58
1750 1984 5.915196 GCTCGATCCATTTTTATTTGCTACC 59.085 40.000 0.00 0.00 0.00 3.18
1751 1985 6.238759 GCTCGATCCATTTTTATTTGCTACCT 60.239 38.462 0.00 0.00 0.00 3.08
1753 1987 8.149973 TCGATCCATTTTTATTTGCTACCTAC 57.850 34.615 0.00 0.00 0.00 3.18
1754 1988 7.990886 TCGATCCATTTTTATTTGCTACCTACT 59.009 33.333 0.00 0.00 0.00 2.57
1755 1989 9.268268 CGATCCATTTTTATTTGCTACCTACTA 57.732 33.333 0.00 0.00 0.00 1.82
1758 1992 9.609346 TCCATTTTTATTTGCTACCTACTACTC 57.391 33.333 0.00 0.00 0.00 2.59
1759 1993 8.837389 CCATTTTTATTTGCTACCTACTACTCC 58.163 37.037 0.00 0.00 0.00 3.85
1761 1995 7.744678 TTTTATTTGCTACCTACTACTCCCT 57.255 36.000 0.00 0.00 0.00 4.20
1762 1996 6.973460 TTATTTGCTACCTACTACTCCCTC 57.027 41.667 0.00 0.00 0.00 4.30
1763 1997 3.309600 TTGCTACCTACTACTCCCTCC 57.690 52.381 0.00 0.00 0.00 4.30
1764 1998 1.142465 TGCTACCTACTACTCCCTCCG 59.858 57.143 0.00 0.00 0.00 4.63
1765 1999 1.142667 GCTACCTACTACTCCCTCCGT 59.857 57.143 0.00 0.00 0.00 4.69
1766 2000 2.422661 GCTACCTACTACTCCCTCCGTT 60.423 54.545 0.00 0.00 0.00 4.44
1767 2001 2.433662 ACCTACTACTCCCTCCGTTC 57.566 55.000 0.00 0.00 0.00 3.95
1768 2002 1.307097 CCTACTACTCCCTCCGTTCG 58.693 60.000 0.00 0.00 0.00 3.95
1769 2003 1.134280 CCTACTACTCCCTCCGTTCGA 60.134 57.143 0.00 0.00 0.00 3.71
1770 2004 2.636830 CTACTACTCCCTCCGTTCGAA 58.363 52.381 0.00 0.00 0.00 3.71
1771 2005 1.915141 ACTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
1772 2006 2.454538 ACTACTCCCTCCGTTCGAAAT 58.545 47.619 0.00 0.00 0.00 2.17
1773 2007 2.830321 ACTACTCCCTCCGTTCGAAATT 59.170 45.455 0.00 0.00 0.00 1.82
1774 2008 4.019174 ACTACTCCCTCCGTTCGAAATTA 58.981 43.478 0.00 0.00 0.00 1.40
1775 2009 4.648307 ACTACTCCCTCCGTTCGAAATTAT 59.352 41.667 0.00 0.00 0.00 1.28
1776 2010 4.482952 ACTCCCTCCGTTCGAAATTATT 57.517 40.909 0.00 0.00 0.00 1.40
1777 2011 4.439968 ACTCCCTCCGTTCGAAATTATTC 58.560 43.478 0.00 0.00 0.00 1.75
1875 2109 9.405587 ACATTATTTTTGTGACAAGTAATTCCG 57.594 29.630 11.28 4.79 0.00 4.30
1876 2110 9.619316 CATTATTTTTGTGACAAGTAATTCCGA 57.381 29.630 11.28 0.00 0.00 4.55
1878 2112 7.924103 ATTTTTGTGACAAGTAATTCCGAAC 57.076 32.000 0.00 0.00 0.00 3.95
1879 2113 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
1880 2114 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
1881 2115 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
1893 2127 4.627611 TCCGAACGGAAAGAGTATACTG 57.372 45.455 10.90 0.00 42.05 2.74
1894 2128 4.012374 TCCGAACGGAAAGAGTATACTGT 58.988 43.478 10.90 2.73 42.05 3.55
1895 2129 5.185454 TCCGAACGGAAAGAGTATACTGTA 58.815 41.667 10.90 0.00 42.05 2.74
1896 2130 5.065218 TCCGAACGGAAAGAGTATACTGTAC 59.935 44.000 10.90 4.51 42.05 2.90
1897 2131 5.163723 CCGAACGGAAAGAGTATACTGTACA 60.164 44.000 10.90 0.00 37.50 2.90
1898 2132 6.459298 CCGAACGGAAAGAGTATACTGTACAT 60.459 42.308 10.90 0.00 37.50 2.29
1905 2139 6.716934 AAGAGTATACTGTACATGGACCAG 57.283 41.667 10.90 5.82 0.00 4.00
1936 2170 5.333111 GCTAATTAATTCGTCCGACCATGAC 60.333 44.000 3.39 0.00 0.00 3.06
1937 2171 2.589798 TAATTCGTCCGACCATGACC 57.410 50.000 0.00 0.00 0.00 4.02
1940 2174 1.548081 TTCGTCCGACCATGACCTAA 58.452 50.000 0.00 0.00 0.00 2.69
1982 2216 4.842292 GCATGAGCACGAGATCCA 57.158 55.556 0.00 0.00 41.58 3.41
1983 2217 2.602738 GCATGAGCACGAGATCCAG 58.397 57.895 0.00 0.00 41.58 3.86
1984 2218 1.497223 GCATGAGCACGAGATCCAGC 61.497 60.000 0.00 0.00 41.58 4.85
1985 2219 0.104487 CATGAGCACGAGATCCAGCT 59.896 55.000 0.00 0.00 40.60 4.24
1986 2220 0.104487 ATGAGCACGAGATCCAGCTG 59.896 55.000 6.78 6.78 37.48 4.24
1987 2221 0.967380 TGAGCACGAGATCCAGCTGA 60.967 55.000 17.39 1.21 37.48 4.26
1988 2222 0.527385 GAGCACGAGATCCAGCTGAC 60.527 60.000 17.39 6.35 37.48 3.51
1989 2223 0.969917 AGCACGAGATCCAGCTGACT 60.970 55.000 17.39 11.43 35.72 3.41
1992 2226 1.203287 CACGAGATCCAGCTGACTTGA 59.797 52.381 17.39 3.73 0.00 3.02
1997 2231 2.159128 AGATCCAGCTGACTTGATCGTG 60.159 50.000 17.39 0.00 45.44 4.35
1999 2233 1.364626 CCAGCTGACTTGATCGTGCC 61.365 60.000 17.39 0.00 31.89 5.01
2000 2234 0.671472 CAGCTGACTTGATCGTGCCA 60.671 55.000 8.42 0.00 31.89 4.92
2001 2235 0.671781 AGCTGACTTGATCGTGCCAC 60.672 55.000 0.00 0.00 31.89 5.01
2002 2236 1.959899 GCTGACTTGATCGTGCCACG 61.960 60.000 11.80 11.80 44.19 4.94
2003 2237 0.667487 CTGACTTGATCGTGCCACGT 60.667 55.000 17.83 4.51 43.14 4.49
2004 2238 0.249699 TGACTTGATCGTGCCACGTT 60.250 50.000 17.83 9.08 43.14 3.99
2005 2239 1.000052 TGACTTGATCGTGCCACGTTA 60.000 47.619 17.83 0.00 43.14 3.18
2006 2240 1.654105 GACTTGATCGTGCCACGTTAG 59.346 52.381 17.83 12.04 43.14 2.34
2007 2241 0.999406 CTTGATCGTGCCACGTTAGG 59.001 55.000 17.83 1.81 43.14 2.69
2008 2242 0.319083 TTGATCGTGCCACGTTAGGT 59.681 50.000 17.83 0.00 43.14 3.08
2009 2243 0.389296 TGATCGTGCCACGTTAGGTG 60.389 55.000 17.83 0.00 46.57 4.00
2010 2244 0.389426 GATCGTGCCACGTTAGGTGT 60.389 55.000 17.83 0.00 45.52 4.16
2037 2282 9.863845 TTTTTCTTGTTTGAACCTTTACTTAGG 57.136 29.630 0.00 0.00 41.31 2.69
2071 2316 8.712228 ATGAAAGGATCCAAGTTTTTACTTCT 57.288 30.769 15.82 0.00 0.00 2.85
2073 2318 9.635404 TGAAAGGATCCAAGTTTTTACTTCTTA 57.365 29.630 15.82 0.00 0.00 2.10
2176 2423 6.549912 AGATTTACCGGAAGTACAAAACAC 57.450 37.500 9.46 0.00 0.00 3.32
2177 2424 5.471116 AGATTTACCGGAAGTACAAAACACC 59.529 40.000 9.46 0.00 0.00 4.16
2178 2425 4.420522 TTACCGGAAGTACAAAACACCT 57.579 40.909 9.46 0.00 0.00 4.00
2182 2429 5.192176 ACCGGAAGTACAAAACACCTTAAA 58.808 37.500 9.46 0.00 0.00 1.52
2183 2430 5.066375 ACCGGAAGTACAAAACACCTTAAAC 59.934 40.000 9.46 0.00 0.00 2.01
2184 2431 5.066246 CCGGAAGTACAAAACACCTTAAACA 59.934 40.000 0.00 0.00 0.00 2.83
2187 2434 8.344098 CGGAAGTACAAAACACCTTAAACATAA 58.656 33.333 0.00 0.00 0.00 1.90
2194 2441 9.357161 ACAAAACACCTTAAACATAATGTAGGA 57.643 29.630 0.00 0.00 30.24 2.94
2198 2445 7.913789 ACACCTTAAACATAATGTAGGAGTGA 58.086 34.615 0.00 0.00 30.08 3.41
2199 2446 8.380099 ACACCTTAAACATAATGTAGGAGTGAA 58.620 33.333 0.00 0.00 30.08 3.18
2200 2447 8.883731 CACCTTAAACATAATGTAGGAGTGAAG 58.116 37.037 0.00 0.00 30.24 3.02
2201 2448 8.047310 ACCTTAAACATAATGTAGGAGTGAAGG 58.953 37.037 0.00 0.00 34.63 3.46
2202 2449 7.499232 CCTTAAACATAATGTAGGAGTGAAGGG 59.501 40.741 0.00 0.00 27.50 3.95
2203 2450 4.423625 ACATAATGTAGGAGTGAAGGGC 57.576 45.455 0.00 0.00 0.00 5.19
2204 2451 3.780294 ACATAATGTAGGAGTGAAGGGCA 59.220 43.478 0.00 0.00 0.00 5.36
2205 2452 4.227300 ACATAATGTAGGAGTGAAGGGCAA 59.773 41.667 0.00 0.00 0.00 4.52
2208 2455 1.340017 TGTAGGAGTGAAGGGCAATGC 60.340 52.381 0.00 0.00 32.76 3.56
2209 2456 1.065126 GTAGGAGTGAAGGGCAATGCT 60.065 52.381 4.82 0.00 45.33 3.79
2211 2458 1.211457 AGGAGTGAAGGGCAATGCTAG 59.789 52.381 4.82 0.00 41.56 3.42
2213 2460 2.284190 GAGTGAAGGGCAATGCTAGAC 58.716 52.381 4.82 0.00 0.00 2.59
2215 2462 1.065126 GTGAAGGGCAATGCTAGACCT 60.065 52.381 4.82 0.00 0.00 3.85
2216 2463 2.170607 GTGAAGGGCAATGCTAGACCTA 59.829 50.000 4.82 0.00 0.00 3.08
2217 2464 2.170607 TGAAGGGCAATGCTAGACCTAC 59.829 50.000 4.82 0.00 0.00 3.18
2218 2465 1.879575 AGGGCAATGCTAGACCTACA 58.120 50.000 4.82 0.00 0.00 2.74
2220 2467 3.587498 AGGGCAATGCTAGACCTACATA 58.413 45.455 4.82 0.00 0.00 2.29
2222 2469 4.599241 AGGGCAATGCTAGACCTACATAAT 59.401 41.667 4.82 0.00 0.00 1.28
2223 2470 5.785423 AGGGCAATGCTAGACCTACATAATA 59.215 40.000 4.82 0.00 0.00 0.98
2224 2471 6.445139 AGGGCAATGCTAGACCTACATAATAT 59.555 38.462 4.82 0.00 0.00 1.28
2225 2472 7.037297 AGGGCAATGCTAGACCTACATAATATT 60.037 37.037 4.82 0.00 0.00 1.28
2227 2474 8.454106 GGCAATGCTAGACCTACATAATATTTG 58.546 37.037 4.82 0.00 0.00 2.32
2228 2475 9.003658 GCAATGCTAGACCTACATAATATTTGT 57.996 33.333 0.00 1.20 0.00 2.83
2232 2479 9.687210 TGCTAGACCTACATAATATTTGTTACG 57.313 33.333 0.00 0.00 0.00 3.18
2233 2480 9.688592 GCTAGACCTACATAATATTTGTTACGT 57.311 33.333 0.00 0.00 0.00 3.57
2235 2482 8.361592 AGACCTACATAATATTTGTTACGTGC 57.638 34.615 0.00 0.00 0.00 5.34
2254 2501 5.273523 GTGCTTTACGGAAATAGAAACGT 57.726 39.130 0.00 0.00 42.71 3.99
2256 2503 4.152759 TGCTTTACGGAAATAGAAACGTGG 59.847 41.667 0.00 0.00 40.12 4.94
2257 2504 4.152938 GCTTTACGGAAATAGAAACGTGGT 59.847 41.667 0.00 0.00 40.12 4.16
2258 2505 5.594724 TTTACGGAAATAGAAACGTGGTG 57.405 39.130 0.00 0.00 40.12 4.17
2259 2506 1.802365 ACGGAAATAGAAACGTGGTGC 59.198 47.619 0.00 0.00 38.24 5.01
2270 2517 2.150424 CGTGGTGCGTTCTTAGTGG 58.850 57.895 0.00 0.00 35.54 4.00
2271 2518 0.319211 CGTGGTGCGTTCTTAGTGGA 60.319 55.000 0.00 0.00 35.54 4.02
2275 2522 2.236146 TGGTGCGTTCTTAGTGGATCAT 59.764 45.455 0.00 0.00 0.00 2.45
2277 2524 3.063997 GGTGCGTTCTTAGTGGATCATTG 59.936 47.826 0.00 0.00 0.00 2.82
2279 2526 2.614057 GCGTTCTTAGTGGATCATTGGG 59.386 50.000 0.00 0.00 0.00 4.12
2280 2527 3.206150 CGTTCTTAGTGGATCATTGGGG 58.794 50.000 0.00 0.00 0.00 4.96
2281 2528 3.555966 GTTCTTAGTGGATCATTGGGGG 58.444 50.000 0.00 0.00 0.00 5.40
2282 2529 3.144068 TCTTAGTGGATCATTGGGGGA 57.856 47.619 0.00 0.00 0.00 4.81
2283 2530 3.469859 TCTTAGTGGATCATTGGGGGAA 58.530 45.455 0.00 0.00 0.00 3.97
2284 2531 3.459598 TCTTAGTGGATCATTGGGGGAAG 59.540 47.826 0.00 0.00 0.00 3.46
2296 3265 2.512355 GGGGAAGGGAGATCCGCTC 61.512 68.421 2.70 0.00 44.23 5.03
2354 3335 0.992695 AAGCCCTCCTCCAAAGGTAC 59.007 55.000 0.00 0.00 43.82 3.34
2356 3337 1.262640 GCCCTCCTCCAAAGGTACGA 61.263 60.000 0.00 0.00 43.82 3.43
2362 3343 1.407979 CCTCCAAAGGTACGACGCTAT 59.592 52.381 0.00 0.00 37.94 2.97
2368 3349 1.208614 GGTACGACGCTATAGCCCG 59.791 63.158 24.06 24.06 38.79 6.13
2371 3352 0.588252 TACGACGCTATAGCCCGTTC 59.412 55.000 31.23 17.67 43.17 3.95
2376 3357 0.956633 CGCTATAGCCCGTTCCTGTA 59.043 55.000 19.00 0.00 37.91 2.74
2385 3366 1.762957 CCCGTTCCTGTATGATGAGGT 59.237 52.381 0.00 0.00 0.00 3.85
2386 3367 2.963101 CCCGTTCCTGTATGATGAGGTA 59.037 50.000 0.00 0.00 0.00 3.08
2412 3393 1.135315 CGGAATGCTTCAAGTGCGG 59.865 57.895 0.00 0.00 0.00 5.69
2418 3399 3.058160 CTTCAAGTGCGGCTGGGG 61.058 66.667 0.00 0.00 0.00 4.96
2443 3424 1.066858 CGCTTCCAGGTACAGTGACAT 60.067 52.381 0.00 0.00 0.00 3.06
2447 3428 3.695830 TCCAGGTACAGTGACATTTCC 57.304 47.619 0.00 0.00 0.00 3.13
2455 3436 1.066573 CAGTGACATTTCCTCCGCTCT 60.067 52.381 0.00 0.00 0.00 4.09
2456 3437 2.166459 CAGTGACATTTCCTCCGCTCTA 59.834 50.000 0.00 0.00 0.00 2.43
2457 3438 3.034635 AGTGACATTTCCTCCGCTCTAT 58.965 45.455 0.00 0.00 0.00 1.98
2458 3439 3.068873 AGTGACATTTCCTCCGCTCTATC 59.931 47.826 0.00 0.00 0.00 2.08
2491 3472 1.755783 GGAGGAAGGGCATGCCTTG 60.756 63.158 34.70 0.00 36.10 3.61
2499 3480 2.046285 GGCATGCCTTGGCGTACTT 61.046 57.895 29.98 0.00 41.53 2.24
2500 3481 1.429423 GCATGCCTTGGCGTACTTC 59.571 57.895 6.36 0.00 0.00 3.01
2564 3564 3.315142 GATGTCTGGCGAGGGCACA 62.315 63.158 0.00 0.00 42.47 4.57
2569 3569 1.377725 CTGGCGAGGGCACAAAGAT 60.378 57.895 0.00 0.00 42.47 2.40
2578 3578 1.168714 GGCACAAAGATGAGGGTGAC 58.831 55.000 0.00 0.00 33.16 3.67
2632 3632 2.969806 GCGCCATCATATGTGCCGG 61.970 63.158 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.686052 GAAAACCATGCCCAGTGAACA 59.314 47.619 0.00 0.00 0.00 3.18
29 30 5.008911 TGCTTCACATATGATGGCATGTTAC 59.991 40.000 10.38 0.00 38.31 2.50
114 115 5.235850 TGCTCCCTAATGTCACAAAGTTA 57.764 39.130 0.00 0.00 0.00 2.24
158 159 4.551702 TCCCCATATATGACATCGTTGG 57.448 45.455 14.54 4.09 0.00 3.77
163 164 7.094205 GGTGTTTTCATCCCCATATATGACATC 60.094 40.741 14.54 3.92 31.99 3.06
164 165 6.721208 GGTGTTTTCATCCCCATATATGACAT 59.279 38.462 14.54 0.00 31.99 3.06
252 253 1.133976 ACATGCTTGCTCCCAGATACC 60.134 52.381 0.00 0.00 0.00 2.73
370 371 2.416296 CCCAGATACGACGTTGTTGCTA 60.416 50.000 14.93 0.00 0.00 3.49
434 572 7.379098 ACTAGGAGCAAAAATACTACAAAGC 57.621 36.000 0.00 0.00 0.00 3.51
446 584 3.134804 GGCCTCAGATACTAGGAGCAAAA 59.865 47.826 0.00 0.00 34.58 2.44
462 601 2.484241 CGAACATCATCTCATGGCCTCA 60.484 50.000 3.32 0.00 0.00 3.86
569 714 8.019669 GGACGTAGGTACATAGTACAATACATG 58.980 40.741 9.27 0.00 0.00 3.21
572 717 6.903419 GGGACGTAGGTACATAGTACAATAC 58.097 44.000 9.27 9.61 0.00 1.89
636 781 9.672673 CCTTCATCCCACGATATAAGATATTTT 57.327 33.333 0.00 0.00 0.00 1.82
637 782 9.046846 TCCTTCATCCCACGATATAAGATATTT 57.953 33.333 0.00 0.00 0.00 1.40
638 783 8.609617 TCCTTCATCCCACGATATAAGATATT 57.390 34.615 0.00 0.00 0.00 1.28
639 784 7.841729 ACTCCTTCATCCCACGATATAAGATAT 59.158 37.037 0.00 0.00 0.00 1.63
643 794 5.730296 ACTCCTTCATCCCACGATATAAG 57.270 43.478 0.00 0.00 0.00 1.73
646 797 7.400339 ACATATTACTCCTTCATCCCACGATAT 59.600 37.037 0.00 0.00 0.00 1.63
647 798 6.724441 ACATATTACTCCTTCATCCCACGATA 59.276 38.462 0.00 0.00 0.00 2.92
649 800 4.899457 ACATATTACTCCTTCATCCCACGA 59.101 41.667 0.00 0.00 0.00 4.35
650 801 5.215252 ACATATTACTCCTTCATCCCACG 57.785 43.478 0.00 0.00 0.00 4.94
651 802 7.119846 GCATAACATATTACTCCTTCATCCCAC 59.880 40.741 0.00 0.00 0.00 4.61
653 804 6.599638 GGCATAACATATTACTCCTTCATCCC 59.400 42.308 0.00 0.00 0.00 3.85
654 805 7.168219 TGGCATAACATATTACTCCTTCATCC 58.832 38.462 0.00 0.00 0.00 3.51
655 806 8.621532 TTGGCATAACATATTACTCCTTCATC 57.378 34.615 0.00 0.00 0.00 2.92
658 809 8.345565 CAACTTGGCATAACATATTACTCCTTC 58.654 37.037 0.00 0.00 0.00 3.46
662 813 7.518370 CGTCCAACTTGGCATAACATATTACTC 60.518 40.741 2.52 0.00 37.47 2.59
665 816 6.350103 TCGTCCAACTTGGCATAACATATTA 58.650 36.000 2.52 0.00 37.47 0.98
667 818 4.776349 TCGTCCAACTTGGCATAACATAT 58.224 39.130 2.52 0.00 37.47 1.78
668 819 4.188462 CTCGTCCAACTTGGCATAACATA 58.812 43.478 2.52 0.00 37.47 2.29
671 822 2.423577 ACTCGTCCAACTTGGCATAAC 58.576 47.619 2.52 0.00 37.47 1.89
672 823 2.851263 ACTCGTCCAACTTGGCATAA 57.149 45.000 2.52 0.00 37.47 1.90
683 834 2.299582 TCCGTTTGGAATTACTCGTCCA 59.700 45.455 0.00 0.00 42.85 4.02
684 835 2.928116 CTCCGTTTGGAATTACTCGTCC 59.072 50.000 0.00 0.00 45.87 4.79
685 836 2.928116 CCTCCGTTTGGAATTACTCGTC 59.072 50.000 0.00 0.00 45.87 4.20
686 837 2.354403 CCCTCCGTTTGGAATTACTCGT 60.354 50.000 0.00 0.00 45.87 4.18
687 838 2.093869 TCCCTCCGTTTGGAATTACTCG 60.094 50.000 0.00 0.00 45.87 4.18
688 839 3.055312 ACTCCCTCCGTTTGGAATTACTC 60.055 47.826 0.00 0.00 45.87 2.59
689 840 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
690 841 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
691 842 6.743208 GCATATACTCCCTCCGTTTGGAATTA 60.743 42.308 0.00 0.00 45.87 1.40
692 843 5.621193 CATATACTCCCTCCGTTTGGAATT 58.379 41.667 0.00 0.00 45.87 2.17
693 844 4.505039 GCATATACTCCCTCCGTTTGGAAT 60.505 45.833 0.00 0.00 45.87 3.01
694 845 3.181458 GCATATACTCCCTCCGTTTGGAA 60.181 47.826 0.00 0.00 45.87 3.53
695 846 2.367567 GCATATACTCCCTCCGTTTGGA 59.632 50.000 0.00 0.00 43.88 3.53
696 847 2.550208 GGCATATACTCCCTCCGTTTGG 60.550 54.545 0.00 0.00 0.00 3.28
697 848 2.104111 TGGCATATACTCCCTCCGTTTG 59.896 50.000 0.00 0.00 0.00 2.93
698 849 2.404559 TGGCATATACTCCCTCCGTTT 58.595 47.619 0.00 0.00 0.00 3.60
699 850 2.097110 TGGCATATACTCCCTCCGTT 57.903 50.000 0.00 0.00 0.00 4.44
700 851 1.971357 CTTGGCATATACTCCCTCCGT 59.029 52.381 0.00 0.00 0.00 4.69
701 852 1.971357 ACTTGGCATATACTCCCTCCG 59.029 52.381 0.00 0.00 0.00 4.63
702 853 3.136626 ACAACTTGGCATATACTCCCTCC 59.863 47.826 0.00 0.00 0.00 4.30
703 854 4.423625 ACAACTTGGCATATACTCCCTC 57.576 45.455 0.00 0.00 0.00 4.30
704 855 6.126478 ACAATACAACTTGGCATATACTCCCT 60.126 38.462 0.00 0.00 0.00 4.20
705 856 6.017109 CACAATACAACTTGGCATATACTCCC 60.017 42.308 0.00 0.00 0.00 4.30
706 857 6.542370 ACACAATACAACTTGGCATATACTCC 59.458 38.462 0.00 0.00 0.00 3.85
707 858 7.553881 ACACAATACAACTTGGCATATACTC 57.446 36.000 0.00 0.00 0.00 2.59
708 859 8.265055 AGTACACAATACAACTTGGCATATACT 58.735 33.333 0.00 0.00 0.00 2.12
709 860 8.433421 AGTACACAATACAACTTGGCATATAC 57.567 34.615 0.00 0.00 0.00 1.47
710 861 9.537192 GTAGTACACAATACAACTTGGCATATA 57.463 33.333 0.00 0.00 0.00 0.86
711 862 8.265055 AGTAGTACACAATACAACTTGGCATAT 58.735 33.333 2.52 0.00 0.00 1.78
712 863 7.547722 CAGTAGTACACAATACAACTTGGCATA 59.452 37.037 2.52 0.00 0.00 3.14
713 864 6.371548 CAGTAGTACACAATACAACTTGGCAT 59.628 38.462 2.52 0.00 0.00 4.40
714 865 5.699001 CAGTAGTACACAATACAACTTGGCA 59.301 40.000 2.52 0.00 0.00 4.92
715 866 5.121768 CCAGTAGTACACAATACAACTTGGC 59.878 44.000 2.52 0.00 0.00 4.52
716 867 6.460781 TCCAGTAGTACACAATACAACTTGG 58.539 40.000 2.52 0.00 0.00 3.61
717 868 6.590292 CCTCCAGTAGTACACAATACAACTTG 59.410 42.308 2.52 0.00 0.00 3.16
718 869 6.269307 ACCTCCAGTAGTACACAATACAACTT 59.731 38.462 2.52 0.00 0.00 2.66
719 870 5.778750 ACCTCCAGTAGTACACAATACAACT 59.221 40.000 2.52 0.00 0.00 3.16
720 871 5.867716 CACCTCCAGTAGTACACAATACAAC 59.132 44.000 2.52 0.00 0.00 3.32
721 872 5.776208 TCACCTCCAGTAGTACACAATACAA 59.224 40.000 2.52 0.00 0.00 2.41
722 873 5.326900 TCACCTCCAGTAGTACACAATACA 58.673 41.667 2.52 0.00 0.00 2.29
723 874 5.418209 ACTCACCTCCAGTAGTACACAATAC 59.582 44.000 2.52 0.00 0.00 1.89
724 875 5.417894 CACTCACCTCCAGTAGTACACAATA 59.582 44.000 2.52 0.00 0.00 1.90
725 876 4.220821 CACTCACCTCCAGTAGTACACAAT 59.779 45.833 2.52 0.00 0.00 2.71
726 877 3.572682 CACTCACCTCCAGTAGTACACAA 59.427 47.826 2.52 0.00 0.00 3.33
727 878 3.154710 CACTCACCTCCAGTAGTACACA 58.845 50.000 2.52 0.00 0.00 3.72
728 879 2.492484 CCACTCACCTCCAGTAGTACAC 59.508 54.545 2.52 0.00 0.00 2.90
729 880 2.109480 ACCACTCACCTCCAGTAGTACA 59.891 50.000 2.52 0.00 0.00 2.90
730 881 2.805194 ACCACTCACCTCCAGTAGTAC 58.195 52.381 0.00 0.00 0.00 2.73
731 882 3.537795 AACCACTCACCTCCAGTAGTA 57.462 47.619 0.00 0.00 0.00 1.82
732 883 2.368875 CAAACCACTCACCTCCAGTAGT 59.631 50.000 0.00 0.00 0.00 2.73
733 884 2.368875 ACAAACCACTCACCTCCAGTAG 59.631 50.000 0.00 0.00 0.00 2.57
734 885 2.404559 ACAAACCACTCACCTCCAGTA 58.595 47.619 0.00 0.00 0.00 2.74
735 886 1.213296 ACAAACCACTCACCTCCAGT 58.787 50.000 0.00 0.00 0.00 4.00
736 887 1.949525 CAACAAACCACTCACCTCCAG 59.050 52.381 0.00 0.00 0.00 3.86
737 888 1.283613 ACAACAAACCACTCACCTCCA 59.716 47.619 0.00 0.00 0.00 3.86
738 889 2.052782 ACAACAAACCACTCACCTCC 57.947 50.000 0.00 0.00 0.00 4.30
739 890 5.767816 ATTAACAACAAACCACTCACCTC 57.232 39.130 0.00 0.00 0.00 3.85
740 891 7.833285 ATAATTAACAACAAACCACTCACCT 57.167 32.000 0.00 0.00 0.00 4.00
764 915 9.926158 GATCAGAGATCAGAGCTCAAATAATAA 57.074 33.333 17.95 0.00 34.85 1.40
765 916 9.311676 AGATCAGAGATCAGAGCTCAAATAATA 57.688 33.333 17.95 0.00 34.85 0.98
766 917 8.197592 AGATCAGAGATCAGAGCTCAAATAAT 57.802 34.615 17.95 3.67 34.85 1.28
767 918 7.506599 AGAGATCAGAGATCAGAGCTCAAATAA 59.493 37.037 17.95 0.00 44.13 1.40
768 919 7.005902 AGAGATCAGAGATCAGAGCTCAAATA 58.994 38.462 17.95 0.58 44.13 1.40
769 920 5.836898 AGAGATCAGAGATCAGAGCTCAAAT 59.163 40.000 17.95 10.06 44.13 2.32
770 921 5.068067 CAGAGATCAGAGATCAGAGCTCAAA 59.932 44.000 17.95 5.54 44.13 2.69
771 922 4.581409 CAGAGATCAGAGATCAGAGCTCAA 59.419 45.833 17.95 5.90 44.13 3.02
772 923 4.139038 CAGAGATCAGAGATCAGAGCTCA 58.861 47.826 17.95 0.00 44.13 4.26
773 924 4.392047 TCAGAGATCAGAGATCAGAGCTC 58.608 47.826 7.68 7.68 42.70 4.09
774 925 4.395625 CTCAGAGATCAGAGATCAGAGCT 58.604 47.826 9.43 0.00 32.00 4.09
775 926 3.504906 CCTCAGAGATCAGAGATCAGAGC 59.495 52.174 9.43 0.00 32.00 4.09
776 927 3.504906 GCCTCAGAGATCAGAGATCAGAG 59.495 52.174 9.43 11.50 32.00 3.35
777 928 3.489355 GCCTCAGAGATCAGAGATCAGA 58.511 50.000 9.43 3.96 32.00 3.27
778 929 2.227149 CGCCTCAGAGATCAGAGATCAG 59.773 54.545 9.43 0.00 32.00 2.90
779 930 2.158696 TCGCCTCAGAGATCAGAGATCA 60.159 50.000 9.43 0.00 32.00 2.92
780 931 2.485426 CTCGCCTCAGAGATCAGAGATC 59.515 54.545 0.00 0.00 40.57 2.75
781 932 2.507484 CTCGCCTCAGAGATCAGAGAT 58.493 52.381 0.00 0.00 40.57 2.75
782 933 1.476652 CCTCGCCTCAGAGATCAGAGA 60.477 57.143 0.00 0.00 40.57 3.10
783 934 0.953727 CCTCGCCTCAGAGATCAGAG 59.046 60.000 0.00 2.17 40.57 3.35
784 935 0.548510 TCCTCGCCTCAGAGATCAGA 59.451 55.000 0.00 0.00 40.57 3.27
785 936 0.953727 CTCCTCGCCTCAGAGATCAG 59.046 60.000 0.00 0.00 40.57 2.90
786 937 0.467106 CCTCCTCGCCTCAGAGATCA 60.467 60.000 0.00 0.00 40.57 2.92
787 938 1.805428 GCCTCCTCGCCTCAGAGATC 61.805 65.000 0.00 0.00 40.57 2.75
788 939 1.832167 GCCTCCTCGCCTCAGAGAT 60.832 63.158 0.00 0.00 40.57 2.75
789 940 2.441164 GCCTCCTCGCCTCAGAGA 60.441 66.667 0.00 0.00 40.57 3.10
790 941 1.684386 ATTGCCTCCTCGCCTCAGAG 61.684 60.000 0.00 0.00 37.97 3.35
791 942 0.397114 TATTGCCTCCTCGCCTCAGA 60.397 55.000 0.00 0.00 0.00 3.27
792 943 0.465705 TTATTGCCTCCTCGCCTCAG 59.534 55.000 0.00 0.00 0.00 3.35
793 944 0.465705 CTTATTGCCTCCTCGCCTCA 59.534 55.000 0.00 0.00 0.00 3.86
794 945 0.882484 GCTTATTGCCTCCTCGCCTC 60.882 60.000 0.00 0.00 35.15 4.70
795 946 1.147153 GCTTATTGCCTCCTCGCCT 59.853 57.895 0.00 0.00 35.15 5.52
796 947 0.536006 ATGCTTATTGCCTCCTCGCC 60.536 55.000 0.00 0.00 42.00 5.54
797 948 2.169832 TATGCTTATTGCCTCCTCGC 57.830 50.000 0.00 0.00 42.00 5.03
798 949 6.992063 ATTTATATGCTTATTGCCTCCTCG 57.008 37.500 0.00 0.00 42.00 4.63
807 958 9.573133 GCGCAAGGAATAATTTATATGCTTATT 57.427 29.630 0.30 0.00 38.28 1.40
808 959 8.190784 GGCGCAAGGAATAATTTATATGCTTAT 58.809 33.333 10.83 0.00 38.28 1.73
809 960 7.362574 GGGCGCAAGGAATAATTTATATGCTTA 60.363 37.037 10.83 0.00 38.28 3.09
810 961 6.389906 GGCGCAAGGAATAATTTATATGCTT 58.610 36.000 10.83 6.96 38.28 3.91
811 962 5.105756 GGGCGCAAGGAATAATTTATATGCT 60.106 40.000 10.83 2.87 38.28 3.79
812 963 5.102313 GGGCGCAAGGAATAATTTATATGC 58.898 41.667 10.83 0.00 38.28 3.14
813 964 6.515272 AGGGCGCAAGGAATAATTTATATG 57.485 37.500 10.83 0.00 38.28 1.78
814 965 5.354234 CGAGGGCGCAAGGAATAATTTATAT 59.646 40.000 10.83 0.00 38.28 0.86
815 966 4.693566 CGAGGGCGCAAGGAATAATTTATA 59.306 41.667 10.83 0.00 38.28 0.98
816 967 3.502211 CGAGGGCGCAAGGAATAATTTAT 59.498 43.478 10.83 0.00 38.28 1.40
817 968 2.875933 CGAGGGCGCAAGGAATAATTTA 59.124 45.455 10.83 0.00 38.28 1.40
818 969 1.676006 CGAGGGCGCAAGGAATAATTT 59.324 47.619 10.83 0.00 38.28 1.82
819 970 1.308998 CGAGGGCGCAAGGAATAATT 58.691 50.000 10.83 0.00 38.28 1.40
820 971 3.006672 CGAGGGCGCAAGGAATAAT 57.993 52.632 10.83 0.00 38.28 1.28
821 972 4.532490 CGAGGGCGCAAGGAATAA 57.468 55.556 10.83 0.00 38.28 1.40
839 990 3.423162 CTCAGAGAAGGCCGAGGCG 62.423 68.421 8.14 0.00 43.06 5.52
840 991 2.498726 CTCAGAGAAGGCCGAGGC 59.501 66.667 5.37 5.37 41.06 4.70
841 992 3.215245 CCTCAGAGAAGGCCGAGG 58.785 66.667 7.61 7.61 39.20 4.63
842 993 0.967887 TCACCTCAGAGAAGGCCGAG 60.968 60.000 0.00 0.00 40.34 4.63
843 994 0.967887 CTCACCTCAGAGAAGGCCGA 60.968 60.000 0.00 0.00 40.34 5.54
844 995 1.515020 CTCACCTCAGAGAAGGCCG 59.485 63.158 0.00 0.00 40.34 6.13
845 996 0.907230 ACCTCACCTCAGAGAAGGCC 60.907 60.000 0.00 0.00 40.34 5.19
846 997 0.980423 AACCTCACCTCAGAGAAGGC 59.020 55.000 0.00 0.00 40.34 4.35
847 998 2.873649 GCAAACCTCACCTCAGAGAAGG 60.874 54.545 0.00 5.53 42.55 3.46
848 999 2.038295 AGCAAACCTCACCTCAGAGAAG 59.962 50.000 0.00 0.00 37.87 2.85
849 1000 2.050144 AGCAAACCTCACCTCAGAGAA 58.950 47.619 0.00 0.00 37.87 2.87
850 1001 1.722034 AGCAAACCTCACCTCAGAGA 58.278 50.000 0.00 0.00 37.87 3.10
851 1002 2.149578 CAAGCAAACCTCACCTCAGAG 58.850 52.381 0.00 0.00 35.39 3.35
871 1022 6.920210 GGATGGATGAAAGCAAAGTATAAAGC 59.080 38.462 0.00 0.00 0.00 3.51
872 1023 7.999679 TGGATGGATGAAAGCAAAGTATAAAG 58.000 34.615 0.00 0.00 0.00 1.85
873 1024 7.953005 TGGATGGATGAAAGCAAAGTATAAA 57.047 32.000 0.00 0.00 0.00 1.40
888 1039 2.289072 GGACGTGGAGTATGGATGGATG 60.289 54.545 0.00 0.00 0.00 3.51
1110 1279 3.642778 GAAGACGGCCACGCAGCTA 62.643 63.158 2.24 0.00 46.04 3.32
1635 1861 4.489771 CAGGATGCCCCCACGGAC 62.490 72.222 0.00 0.00 34.66 4.79
1702 1936 6.681729 TCCAACAACAATCTACTCCTACTT 57.318 37.500 0.00 0.00 0.00 2.24
1703 1937 5.337652 GCTCCAACAACAATCTACTCCTACT 60.338 44.000 0.00 0.00 0.00 2.57
1704 1938 4.870991 GCTCCAACAACAATCTACTCCTAC 59.129 45.833 0.00 0.00 0.00 3.18
1705 1939 4.777896 AGCTCCAACAACAATCTACTCCTA 59.222 41.667 0.00 0.00 0.00 2.94
1706 1940 3.584848 AGCTCCAACAACAATCTACTCCT 59.415 43.478 0.00 0.00 0.00 3.69
1749 1983 1.134280 TCGAACGGAGGGAGTAGTAGG 60.134 57.143 0.00 0.00 0.00 3.18
1750 1984 2.322355 TCGAACGGAGGGAGTAGTAG 57.678 55.000 0.00 0.00 0.00 2.57
1751 1985 2.787473 TTCGAACGGAGGGAGTAGTA 57.213 50.000 0.00 0.00 0.00 1.82
1753 1987 3.521947 AATTTCGAACGGAGGGAGTAG 57.478 47.619 0.00 0.00 0.00 2.57
1754 1988 5.594926 GAATAATTTCGAACGGAGGGAGTA 58.405 41.667 0.00 0.00 0.00 2.59
1755 1989 4.439968 GAATAATTTCGAACGGAGGGAGT 58.560 43.478 0.00 0.00 0.00 3.85
1849 2083 9.405587 CGGAATTACTTGTCACAAAAATAATGT 57.594 29.630 0.00 0.00 0.00 2.71
1850 2084 9.619316 TCGGAATTACTTGTCACAAAAATAATG 57.381 29.630 0.00 0.00 0.00 1.90
1852 2086 9.453325 GTTCGGAATTACTTGTCACAAAAATAA 57.547 29.630 0.00 0.00 0.00 1.40
1853 2087 7.799447 CGTTCGGAATTACTTGTCACAAAAATA 59.201 33.333 0.00 0.00 0.00 1.40
1854 2088 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
1855 2089 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
1856 2090 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
1857 2091 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
1858 2092 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
1859 2093 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
1860 2094 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
1861 2095 3.663995 TCCGTTCGGAATTACTTGTCA 57.336 42.857 11.66 0.00 0.00 3.58
1862 2096 4.687483 TCTTTCCGTTCGGAATTACTTGTC 59.313 41.667 23.98 0.00 42.99 3.18
1863 2097 4.634199 TCTTTCCGTTCGGAATTACTTGT 58.366 39.130 23.98 0.00 42.99 3.16
1864 2098 4.689345 ACTCTTTCCGTTCGGAATTACTTG 59.311 41.667 23.98 14.38 42.99 3.16
1865 2099 4.891260 ACTCTTTCCGTTCGGAATTACTT 58.109 39.130 23.98 8.20 42.99 2.24
1866 2100 4.532314 ACTCTTTCCGTTCGGAATTACT 57.468 40.909 23.98 7.87 42.99 2.24
1867 2101 7.167136 CAGTATACTCTTTCCGTTCGGAATTAC 59.833 40.741 23.98 17.34 42.99 1.89
1868 2102 7.148018 ACAGTATACTCTTTCCGTTCGGAATTA 60.148 37.037 23.98 15.17 42.99 1.40
1869 2103 6.040878 CAGTATACTCTTTCCGTTCGGAATT 58.959 40.000 23.98 13.00 42.99 2.17
1870 2104 5.126707 ACAGTATACTCTTTCCGTTCGGAAT 59.873 40.000 23.98 13.55 42.99 3.01
1871 2105 4.460382 ACAGTATACTCTTTCCGTTCGGAA 59.540 41.667 20.52 20.52 41.96 4.30
1872 2106 4.012374 ACAGTATACTCTTTCCGTTCGGA 58.988 43.478 10.00 10.00 0.00 4.55
1873 2107 4.367386 ACAGTATACTCTTTCCGTTCGG 57.633 45.455 1.26 4.74 0.00 4.30
1874 2108 5.872635 TGTACAGTATACTCTTTCCGTTCG 58.127 41.667 1.26 0.00 0.00 3.95
1875 2109 6.696148 CCATGTACAGTATACTCTTTCCGTTC 59.304 42.308 1.26 0.00 0.00 3.95
1876 2110 6.379133 TCCATGTACAGTATACTCTTTCCGTT 59.621 38.462 1.26 0.00 0.00 4.44
1877 2111 5.889853 TCCATGTACAGTATACTCTTTCCGT 59.110 40.000 1.26 0.00 0.00 4.69
1878 2112 6.207213 GTCCATGTACAGTATACTCTTTCCG 58.793 44.000 1.26 0.00 0.00 4.30
1879 2113 6.097839 TGGTCCATGTACAGTATACTCTTTCC 59.902 42.308 1.26 0.00 0.00 3.13
1880 2114 7.108841 TGGTCCATGTACAGTATACTCTTTC 57.891 40.000 1.26 0.00 0.00 2.62
1881 2115 6.407074 GCTGGTCCATGTACAGTATACTCTTT 60.407 42.308 1.26 0.00 34.79 2.52
1882 2116 5.069251 GCTGGTCCATGTACAGTATACTCTT 59.931 44.000 1.26 0.00 34.79 2.85
1883 2117 4.585162 GCTGGTCCATGTACAGTATACTCT 59.415 45.833 1.26 0.00 34.79 3.24
1884 2118 4.556898 CGCTGGTCCATGTACAGTATACTC 60.557 50.000 1.26 0.00 34.79 2.59
1885 2119 3.318275 CGCTGGTCCATGTACAGTATACT 59.682 47.826 0.33 0.00 34.79 2.12
1886 2120 3.317149 TCGCTGGTCCATGTACAGTATAC 59.683 47.826 0.33 0.00 34.79 1.47
1887 2121 3.558033 TCGCTGGTCCATGTACAGTATA 58.442 45.455 0.33 0.00 34.79 1.47
1888 2122 2.384828 TCGCTGGTCCATGTACAGTAT 58.615 47.619 0.33 0.00 34.79 2.12
1889 2123 1.842052 TCGCTGGTCCATGTACAGTA 58.158 50.000 0.33 0.00 34.79 2.74
1890 2124 0.973632 TTCGCTGGTCCATGTACAGT 59.026 50.000 0.33 0.00 34.79 3.55
1891 2125 2.093306 TTTCGCTGGTCCATGTACAG 57.907 50.000 0.33 4.66 35.40 2.74
1892 2126 2.422597 CTTTTCGCTGGTCCATGTACA 58.577 47.619 0.00 0.00 0.00 2.90
1893 2127 1.130561 GCTTTTCGCTGGTCCATGTAC 59.869 52.381 0.00 0.00 35.14 2.90
1894 2128 1.448985 GCTTTTCGCTGGTCCATGTA 58.551 50.000 0.00 0.00 35.14 2.29
1895 2129 2.257353 GCTTTTCGCTGGTCCATGT 58.743 52.632 0.00 0.00 35.14 3.21
1905 2139 4.664851 CGGACGAATTAATTAGCTTTTCGC 59.335 41.667 8.08 11.13 42.01 4.70
1914 2148 5.051816 GGTCATGGTCGGACGAATTAATTA 58.948 41.667 0.00 0.00 36.12 1.40
1936 2170 3.633986 GCATGGAAGGAAGACCAATTAGG 59.366 47.826 0.00 0.00 45.67 2.69
1937 2171 4.272489 TGCATGGAAGGAAGACCAATTAG 58.728 43.478 0.00 0.00 39.69 1.73
1940 2174 2.905415 TGCATGGAAGGAAGACCAAT 57.095 45.000 0.00 0.00 39.69 3.16
1966 2200 0.104487 AGCTGGATCTCGTGCTCATG 59.896 55.000 0.00 0.00 0.00 3.07
1967 2201 0.104487 CAGCTGGATCTCGTGCTCAT 59.896 55.000 5.57 0.00 33.03 2.90
1968 2202 0.967380 TCAGCTGGATCTCGTGCTCA 60.967 55.000 15.13 0.00 33.03 4.26
1969 2203 0.527385 GTCAGCTGGATCTCGTGCTC 60.527 60.000 15.13 0.00 33.03 4.26
1970 2204 0.969917 AGTCAGCTGGATCTCGTGCT 60.970 55.000 15.13 0.00 36.04 4.40
1971 2205 0.108424 AAGTCAGCTGGATCTCGTGC 60.108 55.000 15.13 0.00 0.00 5.34
1974 2208 2.741612 GATCAAGTCAGCTGGATCTCG 58.258 52.381 15.13 0.08 44.87 4.04
1975 2209 2.100584 ACGATCAAGTCAGCTGGATCTC 59.899 50.000 21.12 9.33 45.68 2.75
1976 2210 2.106566 ACGATCAAGTCAGCTGGATCT 58.893 47.619 21.12 12.76 45.68 2.75
1977 2211 2.200067 CACGATCAAGTCAGCTGGATC 58.800 52.381 15.13 15.95 44.85 3.36
1978 2212 1.741732 GCACGATCAAGTCAGCTGGAT 60.742 52.381 15.13 8.44 38.07 3.41
1980 2214 1.364626 GGCACGATCAAGTCAGCTGG 61.365 60.000 15.13 0.00 0.00 4.85
1981 2215 0.671472 TGGCACGATCAAGTCAGCTG 60.671 55.000 7.63 7.63 0.00 4.24
1982 2216 0.671781 GTGGCACGATCAAGTCAGCT 60.672 55.000 0.00 0.00 0.00 4.24
1983 2217 1.790387 GTGGCACGATCAAGTCAGC 59.210 57.895 0.00 0.00 0.00 4.26
1984 2218 0.667487 ACGTGGCACGATCAAGTCAG 60.667 55.000 42.65 13.34 46.05 3.51
1985 2219 0.249699 AACGTGGCACGATCAAGTCA 60.250 50.000 42.65 0.00 46.05 3.41
1986 2220 1.654105 CTAACGTGGCACGATCAAGTC 59.346 52.381 42.65 0.87 46.05 3.01
1987 2221 1.671850 CCTAACGTGGCACGATCAAGT 60.672 52.381 42.65 19.57 46.05 3.16
1988 2222 0.999406 CCTAACGTGGCACGATCAAG 59.001 55.000 42.65 29.41 46.05 3.02
1989 2223 0.319083 ACCTAACGTGGCACGATCAA 59.681 50.000 42.65 23.40 46.05 2.57
1992 2226 4.590487 CACCTAACGTGGCACGAT 57.410 55.556 42.65 34.09 46.05 3.73
2035 2280 9.004231 ACTTGGATCCTTTCATAATTACTACCT 57.996 33.333 14.23 0.00 0.00 3.08
2036 2281 9.628500 AACTTGGATCCTTTCATAATTACTACC 57.372 33.333 14.23 0.00 0.00 3.18
2048 2293 9.894783 GTAAGAAGTAAAAACTTGGATCCTTTC 57.105 33.333 14.23 0.00 0.00 2.62
2057 2302 9.634163 AAAGTTGGTGTAAGAAGTAAAAACTTG 57.366 29.630 0.00 0.00 35.96 3.16
2158 2405 4.420522 AAGGTGTTTTGTACTTCCGGTA 57.579 40.909 0.00 0.00 0.00 4.02
2168 2415 9.357161 TCCTACATTATGTTTAAGGTGTTTTGT 57.643 29.630 2.23 0.00 34.42 2.83
2170 2417 9.582648 ACTCCTACATTATGTTTAAGGTGTTTT 57.417 29.630 12.10 0.00 30.51 2.43
2171 2418 9.010029 CACTCCTACATTATGTTTAAGGTGTTT 57.990 33.333 14.18 0.00 31.64 2.83
2172 2419 8.380099 TCACTCCTACATTATGTTTAAGGTGTT 58.620 33.333 14.18 2.74 31.64 3.32
2173 2420 7.913789 TCACTCCTACATTATGTTTAAGGTGT 58.086 34.615 12.10 12.10 33.24 4.16
2174 2421 8.786826 TTCACTCCTACATTATGTTTAAGGTG 57.213 34.615 2.23 8.00 34.42 4.00
2176 2423 7.499232 CCCTTCACTCCTACATTATGTTTAAGG 59.501 40.741 2.23 4.71 0.00 2.69
2177 2424 7.012421 GCCCTTCACTCCTACATTATGTTTAAG 59.988 40.741 2.23 1.45 0.00 1.85
2178 2425 6.826741 GCCCTTCACTCCTACATTATGTTTAA 59.173 38.462 2.23 0.00 0.00 1.52
2182 2429 3.780294 TGCCCTTCACTCCTACATTATGT 59.220 43.478 2.58 2.58 0.00 2.29
2183 2430 4.422073 TGCCCTTCACTCCTACATTATG 57.578 45.455 0.00 0.00 0.00 1.90
2184 2431 5.380043 CATTGCCCTTCACTCCTACATTAT 58.620 41.667 0.00 0.00 0.00 1.28
2187 2434 2.684927 GCATTGCCCTTCACTCCTACAT 60.685 50.000 0.00 0.00 0.00 2.29
2188 2435 1.340017 GCATTGCCCTTCACTCCTACA 60.340 52.381 0.00 0.00 0.00 2.74
2189 2436 1.065126 AGCATTGCCCTTCACTCCTAC 60.065 52.381 4.70 0.00 0.00 3.18
2190 2437 1.289160 AGCATTGCCCTTCACTCCTA 58.711 50.000 4.70 0.00 0.00 2.94
2191 2438 1.211457 CTAGCATTGCCCTTCACTCCT 59.789 52.381 4.70 0.00 0.00 3.69
2193 2440 2.284190 GTCTAGCATTGCCCTTCACTC 58.716 52.381 4.70 0.00 0.00 3.51
2194 2441 1.065126 GGTCTAGCATTGCCCTTCACT 60.065 52.381 4.70 0.00 0.00 3.41
2198 2445 2.196595 TGTAGGTCTAGCATTGCCCTT 58.803 47.619 4.70 0.00 0.00 3.95
2199 2446 1.879575 TGTAGGTCTAGCATTGCCCT 58.120 50.000 4.70 7.20 0.00 5.19
2200 2447 2.938956 ATGTAGGTCTAGCATTGCCC 57.061 50.000 4.70 0.00 0.00 5.36
2201 2448 8.454106 CAAATATTATGTAGGTCTAGCATTGCC 58.546 37.037 4.70 0.00 0.00 4.52
2202 2449 9.003658 ACAAATATTATGTAGGTCTAGCATTGC 57.996 33.333 0.00 0.00 0.00 3.56
2209 2456 9.467258 GCACGTAACAAATATTATGTAGGTCTA 57.533 33.333 0.00 0.00 33.45 2.59
2211 2458 8.361592 AGCACGTAACAAATATTATGTAGGTC 57.638 34.615 0.00 0.00 33.45 3.85
2232 2479 5.077424 CACGTTTCTATTTCCGTAAAGCAC 58.923 41.667 0.00 0.00 31.42 4.40
2233 2480 4.152759 CCACGTTTCTATTTCCGTAAAGCA 59.847 41.667 0.00 0.00 31.42 3.91
2234 2481 4.152938 ACCACGTTTCTATTTCCGTAAAGC 59.847 41.667 0.00 0.00 31.42 3.51
2235 2482 5.614760 CACCACGTTTCTATTTCCGTAAAG 58.385 41.667 0.00 0.00 31.42 1.85
2239 2486 1.802365 GCACCACGTTTCTATTTCCGT 59.198 47.619 0.00 0.00 0.00 4.69
2240 2487 1.201877 CGCACCACGTTTCTATTTCCG 60.202 52.381 0.00 0.00 36.87 4.30
2241 2488 2.520686 CGCACCACGTTTCTATTTCC 57.479 50.000 0.00 0.00 36.87 3.13
2253 2500 2.000447 GATCCACTAAGAACGCACCAC 59.000 52.381 0.00 0.00 0.00 4.16
2254 2501 1.621317 TGATCCACTAAGAACGCACCA 59.379 47.619 0.00 0.00 0.00 4.17
2256 2503 3.063997 CCAATGATCCACTAAGAACGCAC 59.936 47.826 0.00 0.00 0.00 5.34
2257 2504 3.270027 CCAATGATCCACTAAGAACGCA 58.730 45.455 0.00 0.00 0.00 5.24
2258 2505 2.614057 CCCAATGATCCACTAAGAACGC 59.386 50.000 0.00 0.00 0.00 4.84
2259 2506 3.206150 CCCCAATGATCCACTAAGAACG 58.794 50.000 0.00 0.00 0.00 3.95
2260 2507 3.202151 TCCCCCAATGATCCACTAAGAAC 59.798 47.826 0.00 0.00 0.00 3.01
2261 2508 3.469859 TCCCCCAATGATCCACTAAGAA 58.530 45.455 0.00 0.00 0.00 2.52
2262 2509 3.144068 TCCCCCAATGATCCACTAAGA 57.856 47.619 0.00 0.00 0.00 2.10
2263 2510 3.435601 CCTTCCCCCAATGATCCACTAAG 60.436 52.174 0.00 0.00 0.00 2.18
2264 2511 2.513738 CCTTCCCCCAATGATCCACTAA 59.486 50.000 0.00 0.00 0.00 2.24
2265 2512 2.135189 CCTTCCCCCAATGATCCACTA 58.865 52.381 0.00 0.00 0.00 2.74
2266 2513 0.929244 CCTTCCCCCAATGATCCACT 59.071 55.000 0.00 0.00 0.00 4.00
2267 2514 0.106015 CCCTTCCCCCAATGATCCAC 60.106 60.000 0.00 0.00 0.00 4.02
2268 2515 0.254059 TCCCTTCCCCCAATGATCCA 60.254 55.000 0.00 0.00 0.00 3.41
2269 2516 0.480252 CTCCCTTCCCCCAATGATCC 59.520 60.000 0.00 0.00 0.00 3.36
2270 2517 1.522900 TCTCCCTTCCCCCAATGATC 58.477 55.000 0.00 0.00 0.00 2.92
2271 2518 2.068977 GATCTCCCTTCCCCCAATGAT 58.931 52.381 0.00 0.00 0.00 2.45
2275 2522 1.692749 CGGATCTCCCTTCCCCCAA 60.693 63.158 0.00 0.00 0.00 4.12
2277 2524 3.561241 GCGGATCTCCCTTCCCCC 61.561 72.222 0.00 0.00 0.00 5.40
2279 2526 2.862223 CGAGCGGATCTCCCTTCCC 61.862 68.421 0.00 0.00 38.62 3.97
2280 2527 2.731374 CGAGCGGATCTCCCTTCC 59.269 66.667 0.00 0.00 38.62 3.46
2281 2528 2.028337 GCGAGCGGATCTCCCTTC 59.972 66.667 0.00 0.00 38.62 3.46
2282 2529 3.541713 GGCGAGCGGATCTCCCTT 61.542 66.667 0.00 0.00 38.62 3.95
2283 2530 4.841617 TGGCGAGCGGATCTCCCT 62.842 66.667 0.00 0.00 38.62 4.20
2284 2531 3.798954 CTTGGCGAGCGGATCTCCC 62.799 68.421 0.00 0.00 38.62 4.30
2354 3335 1.371389 GGAACGGGCTATAGCGTCG 60.371 63.158 26.63 26.63 43.26 5.12
2356 3337 1.041447 ACAGGAACGGGCTATAGCGT 61.041 55.000 18.30 8.93 43.26 5.07
2362 3343 2.628178 CTCATCATACAGGAACGGGCTA 59.372 50.000 0.00 0.00 0.00 3.93
2368 3349 4.946478 AGCTACCTCATCATACAGGAAC 57.054 45.455 0.00 0.00 33.52 3.62
2371 3352 4.021016 GGGTTAGCTACCTCATCATACAGG 60.021 50.000 10.83 0.00 46.86 4.00
2376 3357 1.971357 CCGGGTTAGCTACCTCATCAT 59.029 52.381 10.83 0.00 46.86 2.45
2385 3366 1.834896 TGAAGCATTCCGGGTTAGCTA 59.165 47.619 0.00 0.00 46.93 3.32
2386 3367 0.618458 TGAAGCATTCCGGGTTAGCT 59.382 50.000 0.00 3.43 46.93 3.32
2424 3405 2.770164 ATGTCACTGTACCTGGAAGC 57.230 50.000 0.00 0.00 0.00 3.86
2432 3413 2.000447 GCGGAGGAAATGTCACTGTAC 59.000 52.381 0.00 0.00 0.00 2.90
2443 3424 2.166459 CACACAGATAGAGCGGAGGAAA 59.834 50.000 0.00 0.00 0.00 3.13
2447 3428 0.593518 CGCACACAGATAGAGCGGAG 60.594 60.000 0.00 0.00 44.20 4.63
2455 3436 1.155889 CCTTGCAACGCACACAGATA 58.844 50.000 0.00 0.00 38.71 1.98
2456 3437 0.534877 TCCTTGCAACGCACACAGAT 60.535 50.000 0.00 0.00 38.71 2.90
2457 3438 1.153269 TCCTTGCAACGCACACAGA 60.153 52.632 0.00 0.00 38.71 3.41
2458 3439 1.280746 CTCCTTGCAACGCACACAG 59.719 57.895 0.00 0.00 38.71 3.66
2494 3475 2.433664 CACGCGTGGGGGAAGTAC 60.434 66.667 31.15 0.00 0.00 2.73
2541 3522 1.326213 CCCTCGCCAGACATCACTCT 61.326 60.000 0.00 0.00 0.00 3.24
2585 3585 2.512286 TGCATGCAGCTCGGCTAC 60.512 61.111 18.46 0.00 45.94 3.58
2595 3595 0.681887 CCATTGGACTCCTGCATGCA 60.682 55.000 21.29 21.29 0.00 3.96
2596 3596 2.012902 GCCATTGGACTCCTGCATGC 62.013 60.000 11.82 11.82 0.00 4.06
2597 3597 1.721664 CGCCATTGGACTCCTGCATG 61.722 60.000 6.95 0.00 0.00 4.06
2598 3598 1.452651 CGCCATTGGACTCCTGCAT 60.453 57.895 6.95 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.