Multiple sequence alignment - TraesCS5D01G562500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G562500 chr5D 100.000 4116 0 0 1 4116 562335860 562339975 0.000000e+00 7601.0
1 TraesCS5D01G562500 chr5D 100.000 28 0 0 3289 3316 247316911 247316884 7.000000e-03 52.8
2 TraesCS5D01G562500 chr7B 88.223 985 70 20 1462 2417 269196 268229 0.000000e+00 1134.0
3 TraesCS5D01G562500 chr7B 88.551 690 45 15 2522 3197 268198 267529 0.000000e+00 806.0
4 TraesCS5D01G562500 chr7B 88.249 417 26 6 1 395 270376 269961 1.040000e-130 477.0
5 TraesCS5D01G562500 chr7B 90.503 358 16 6 3762 4116 266854 266512 1.350000e-124 457.0
6 TraesCS5D01G562500 chr7B 82.460 439 26 29 834 1254 269796 269391 1.830000e-88 337.0
7 TraesCS5D01G562500 chr7B 95.000 40 1 1 654 692 269960 269921 1.240000e-05 62.1
8 TraesCS5D01G562500 chr5B 84.778 854 77 28 2518 3356 712851120 712851935 0.000000e+00 808.0
9 TraesCS5D01G562500 chr5B 88.395 517 32 14 3623 4116 712852238 712852749 7.620000e-167 597.0
10 TraesCS5D01G562500 chr5B 88.787 437 37 8 1465 1901 712850160 712850584 3.640000e-145 525.0
11 TraesCS5D01G562500 chr5B 86.726 452 40 10 2008 2446 712850662 712851106 6.190000e-133 484.0
12 TraesCS5D01G562500 chr5B 83.082 331 36 12 847 1172 712849538 712849853 2.420000e-72 283.0
13 TraesCS5D01G562500 chr4A 78.485 581 75 27 2519 3085 742164766 742165310 6.590000e-88 335.0
14 TraesCS5D01G562500 chr4A 80.505 436 58 14 1468 1903 742163851 742164259 4.000000e-80 309.0
15 TraesCS5D01G562500 chr4A 85.366 287 39 1 1628 1914 741427741 741428024 1.120000e-75 294.0
16 TraesCS5D01G562500 chr4A 83.278 299 47 3 2788 3085 741431915 741432211 5.240000e-69 272.0
17 TraesCS5D01G562500 chr4A 89.674 184 19 0 2017 2200 742164376 742164559 6.880000e-58 235.0
18 TraesCS5D01G562500 chr4A 84.120 233 21 8 2493 2724 741428596 741428813 1.160000e-50 211.0
19 TraesCS5D01G562500 chr4A 93.277 119 8 0 2082 2200 741436016 741436134 4.230000e-40 176.0
20 TraesCS5D01G562500 chr4B 79.545 220 40 3 1682 1900 646672080 646671865 7.130000e-33 152.0
21 TraesCS5D01G562500 chr4D 79.279 222 37 7 1682 1900 502419478 502419263 3.320000e-31 147.0
22 TraesCS5D01G562500 chr5A 78.829 222 38 7 1682 1900 685546678 685546463 1.540000e-29 141.0
23 TraesCS5D01G562500 chr7D 88.136 59 4 2 4059 4114 127769946 127769888 2.660000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G562500 chr5D 562335860 562339975 4115 False 7601.000000 7601 100.00000 1 4116 1 chr5D.!!$F1 4115
1 TraesCS5D01G562500 chr7B 266512 270376 3864 True 545.516667 1134 88.83100 1 4116 6 chr7B.!!$R1 4115
2 TraesCS5D01G562500 chr5B 712849538 712852749 3211 False 539.400000 808 86.35360 847 4116 5 chr5B.!!$F1 3269
3 TraesCS5D01G562500 chr4A 742163851 742165310 1459 False 293.000000 335 82.88800 1468 3085 3 chr4A.!!$F2 1617
4 TraesCS5D01G562500 chr4A 741427741 741436134 8393 False 238.250000 294 86.51025 1628 3085 4 chr4A.!!$F1 1457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 813 0.037419 CAAAGCGGGGGATTTTGGTG 60.037 55.000 0.0 0.0 0.00 4.17 F
908 958 0.101759 GAGAGCAGAGCAGAGCAGAG 59.898 60.000 0.0 0.0 0.00 3.35 F
1543 1736 0.105964 CACCTTCACCCAAGTCGACA 59.894 55.000 19.5 0.0 0.00 4.35 F
1983 2258 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.0 0.0 0.00 3.82 F
2545 2904 1.079819 GCAGTCGCCTTGTGCTCTA 60.080 57.895 0.0 0.0 38.05 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2509 2868 0.463833 GCAAACATCTACCCCCTCCG 60.464 60.000 0.00 0.00 0.00 4.63 R
2516 2875 0.727398 GGCGACTGCAAACATCTACC 59.273 55.000 0.00 0.00 45.35 3.18 R
2977 6412 0.627451 TGCCAGAATGCCAGATCCTT 59.373 50.000 0.00 0.00 31.97 3.36 R
3037 6472 1.290955 CGGACCGCCAAACAGTCTA 59.709 57.895 0.00 0.00 0.00 2.59 R
3719 9594 2.359107 TTTCTGGCTGGCGCTCAG 60.359 61.111 18.16 18.16 46.03 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 77 1.228894 AACTCCGCCTCAGACCAGA 60.229 57.895 0.00 0.00 0.00 3.86
81 86 1.606668 CCTCAGACCAGATAGACTCGC 59.393 57.143 0.00 0.00 0.00 5.03
93 98 0.969917 AGACTCGCTGATGTCCTGCT 60.970 55.000 0.00 0.00 37.55 4.24
94 99 0.741326 GACTCGCTGATGTCCTGCTA 59.259 55.000 0.00 0.00 37.55 3.49
98 104 0.249238 CGCTGATGTCCTGCTACTCC 60.249 60.000 0.00 0.00 37.55 3.85
112 118 2.203972 TACTCCGCGTCCTCCGTTTG 62.204 60.000 4.92 0.00 39.32 2.93
129 135 2.260844 TTGGGTGAGCTCAAACTCTG 57.739 50.000 20.19 0.00 37.58 3.35
131 137 0.957888 GGGTGAGCTCAAACTCTGCC 60.958 60.000 20.19 13.32 37.58 4.85
136 142 2.866028 CTCAAACTCTGCCAGCGC 59.134 61.111 0.00 0.00 0.00 5.92
138 144 4.093952 CAAACTCTGCCAGCGCGG 62.094 66.667 8.83 12.98 43.32 6.46
152 158 2.517875 GCGGCCTCCATGCTGAAT 60.518 61.111 0.00 0.00 40.15 2.57
158 164 0.462789 CCTCCATGCTGAATTTGGCC 59.537 55.000 0.00 0.00 0.00 5.36
176 188 1.719529 CCTGAGCATCCTCCTCATCT 58.280 55.000 0.00 0.00 38.54 2.90
196 208 1.280133 TGATTGTGGCTCCTCCTCTTG 59.720 52.381 0.00 0.00 35.26 3.02
224 236 4.054671 CCGTATCTTCAATCTCCTCTTGC 58.945 47.826 0.00 0.00 0.00 4.01
229 241 0.620556 TCAATCTCCTCTTGCCCCAC 59.379 55.000 0.00 0.00 0.00 4.61
239 251 0.040204 CTTGCCCCACCTCTTCCAAT 59.960 55.000 0.00 0.00 0.00 3.16
249 261 1.139853 CCTCTTCCAATTCCTCCTCGG 59.860 57.143 0.00 0.00 0.00 4.63
252 264 1.555075 CTTCCAATTCCTCCTCGGTCA 59.445 52.381 0.00 0.00 0.00 4.02
302 325 1.079127 CTCCTCCGTGGTTCGCATT 60.079 57.895 0.00 0.00 38.35 3.56
343 366 5.071250 AGGGTGAACAACTTGTAGTATGTCA 59.929 40.000 0.00 0.00 0.00 3.58
358 381 3.228017 TCACCTTGGTGCGGACGA 61.228 61.111 14.49 0.00 0.00 4.20
382 405 2.049433 CGACCGGACGACAAGCTT 60.049 61.111 21.84 0.00 35.09 3.74
395 418 3.610114 CGACAAGCTTGAATTGGAAGTGG 60.610 47.826 32.50 4.56 31.76 4.00
396 419 3.565307 ACAAGCTTGAATTGGAAGTGGA 58.435 40.909 32.50 0.00 31.76 4.02
397 420 3.960102 ACAAGCTTGAATTGGAAGTGGAA 59.040 39.130 32.50 0.00 31.76 3.53
398 421 4.038402 ACAAGCTTGAATTGGAAGTGGAAG 59.962 41.667 32.50 0.00 31.76 3.46
399 422 4.104383 AGCTTGAATTGGAAGTGGAAGA 57.896 40.909 0.00 0.00 0.00 2.87
400 423 4.077822 AGCTTGAATTGGAAGTGGAAGAG 58.922 43.478 0.00 0.00 0.00 2.85
401 424 4.074970 GCTTGAATTGGAAGTGGAAGAGA 58.925 43.478 0.00 0.00 0.00 3.10
402 425 4.155644 GCTTGAATTGGAAGTGGAAGAGAG 59.844 45.833 0.00 0.00 0.00 3.20
403 426 5.555017 CTTGAATTGGAAGTGGAAGAGAGA 58.445 41.667 0.00 0.00 0.00 3.10
404 427 5.157940 TGAATTGGAAGTGGAAGAGAGAG 57.842 43.478 0.00 0.00 0.00 3.20
405 428 4.840680 TGAATTGGAAGTGGAAGAGAGAGA 59.159 41.667 0.00 0.00 0.00 3.10
406 429 5.046735 TGAATTGGAAGTGGAAGAGAGAGAG 60.047 44.000 0.00 0.00 0.00 3.20
407 430 3.816398 TGGAAGTGGAAGAGAGAGAGA 57.184 47.619 0.00 0.00 0.00 3.10
408 431 3.696045 TGGAAGTGGAAGAGAGAGAGAG 58.304 50.000 0.00 0.00 0.00 3.20
409 432 3.075283 TGGAAGTGGAAGAGAGAGAGAGT 59.925 47.826 0.00 0.00 0.00 3.24
410 433 4.289934 TGGAAGTGGAAGAGAGAGAGAGTA 59.710 45.833 0.00 0.00 0.00 2.59
411 434 5.044476 TGGAAGTGGAAGAGAGAGAGAGTAT 60.044 44.000 0.00 0.00 0.00 2.12
412 435 5.299279 GGAAGTGGAAGAGAGAGAGAGTATG 59.701 48.000 0.00 0.00 0.00 2.39
413 436 4.792068 AGTGGAAGAGAGAGAGAGTATGG 58.208 47.826 0.00 0.00 0.00 2.74
414 437 4.476846 AGTGGAAGAGAGAGAGAGTATGGA 59.523 45.833 0.00 0.00 0.00 3.41
415 438 4.821805 GTGGAAGAGAGAGAGAGTATGGAG 59.178 50.000 0.00 0.00 0.00 3.86
416 439 3.821033 GGAAGAGAGAGAGAGTATGGAGC 59.179 52.174 0.00 0.00 0.00 4.70
417 440 4.460263 GAAGAGAGAGAGAGTATGGAGCA 58.540 47.826 0.00 0.00 0.00 4.26
418 441 4.090761 AGAGAGAGAGAGTATGGAGCAG 57.909 50.000 0.00 0.00 0.00 4.24
419 442 2.554032 GAGAGAGAGAGTATGGAGCAGC 59.446 54.545 0.00 0.00 0.00 5.25
420 443 2.091939 AGAGAGAGAGTATGGAGCAGCA 60.092 50.000 0.00 0.00 0.00 4.41
421 444 2.294233 GAGAGAGAGTATGGAGCAGCAG 59.706 54.545 0.00 0.00 0.00 4.24
422 445 2.031120 GAGAGAGTATGGAGCAGCAGT 58.969 52.381 0.00 0.00 0.00 4.40
423 446 1.755959 AGAGAGTATGGAGCAGCAGTG 59.244 52.381 0.00 0.00 0.00 3.66
424 447 1.753649 GAGAGTATGGAGCAGCAGTGA 59.246 52.381 0.00 0.00 0.00 3.41
425 448 1.480137 AGAGTATGGAGCAGCAGTGAC 59.520 52.381 0.00 0.00 0.00 3.67
426 449 1.480137 GAGTATGGAGCAGCAGTGACT 59.520 52.381 0.00 0.00 0.00 3.41
427 450 1.206610 AGTATGGAGCAGCAGTGACTG 59.793 52.381 8.52 8.52 40.80 3.51
428 451 1.066573 GTATGGAGCAGCAGTGACTGT 60.067 52.381 14.82 0.00 39.96 3.55
429 452 0.321387 ATGGAGCAGCAGTGACTGTG 60.321 55.000 14.82 11.84 39.96 3.66
430 453 2.323580 GGAGCAGCAGTGACTGTGC 61.324 63.158 23.27 23.27 39.96 4.57
431 454 1.596203 GAGCAGCAGTGACTGTGCA 60.596 57.895 28.40 0.00 43.82 4.57
432 455 1.566882 GAGCAGCAGTGACTGTGCAG 61.567 60.000 28.40 12.12 43.82 4.41
433 456 1.596203 GCAGCAGTGACTGTGCAGA 60.596 57.895 24.74 0.00 43.82 4.26
434 457 1.839598 GCAGCAGTGACTGTGCAGAC 61.840 60.000 24.74 6.44 43.82 3.51
435 458 1.300465 AGCAGTGACTGTGCAGACG 60.300 57.895 14.82 0.00 43.82 4.18
436 459 2.947890 GCAGTGACTGTGCAGACGC 61.948 63.158 14.82 6.65 40.86 5.19
437 460 2.355126 AGTGACTGTGCAGACGCG 60.355 61.111 3.53 3.53 42.97 6.01
438 461 2.354656 GTGACTGTGCAGACGCGA 60.355 61.111 15.93 0.00 42.97 5.87
439 462 1.734477 GTGACTGTGCAGACGCGAT 60.734 57.895 15.93 0.00 42.97 4.58
440 463 0.456142 GTGACTGTGCAGACGCGATA 60.456 55.000 15.93 0.00 42.97 2.92
441 464 0.456142 TGACTGTGCAGACGCGATAC 60.456 55.000 15.93 3.56 42.97 2.24
442 465 0.456142 GACTGTGCAGACGCGATACA 60.456 55.000 15.93 9.17 42.97 2.29
443 466 0.456824 ACTGTGCAGACGCGATACAG 60.457 55.000 15.93 19.80 42.48 2.74
444 467 0.179163 CTGTGCAGACGCGATACAGA 60.179 55.000 15.93 2.81 40.41 3.41
445 468 0.242555 TGTGCAGACGCGATACAGAA 59.757 50.000 15.93 0.00 42.97 3.02
446 469 0.917259 GTGCAGACGCGATACAGAAG 59.083 55.000 15.93 0.00 42.97 2.85
447 470 0.808755 TGCAGACGCGATACAGAAGA 59.191 50.000 15.93 0.00 42.97 2.87
448 471 1.405463 TGCAGACGCGATACAGAAGAT 59.595 47.619 15.93 0.00 42.97 2.40
449 472 1.783711 GCAGACGCGATACAGAAGATG 59.216 52.381 15.93 0.00 0.00 2.90
450 473 2.541794 GCAGACGCGATACAGAAGATGA 60.542 50.000 15.93 0.00 0.00 2.92
451 474 3.295785 CAGACGCGATACAGAAGATGAG 58.704 50.000 15.93 0.00 0.00 2.90
452 475 3.002759 CAGACGCGATACAGAAGATGAGA 59.997 47.826 15.93 0.00 0.00 3.27
453 476 3.628032 AGACGCGATACAGAAGATGAGAA 59.372 43.478 15.93 0.00 0.00 2.87
454 477 4.277174 AGACGCGATACAGAAGATGAGAAT 59.723 41.667 15.93 0.00 0.00 2.40
455 478 4.294232 ACGCGATACAGAAGATGAGAATG 58.706 43.478 15.93 0.00 0.00 2.67
456 479 4.036852 ACGCGATACAGAAGATGAGAATGA 59.963 41.667 15.93 0.00 0.00 2.57
457 480 4.616381 CGCGATACAGAAGATGAGAATGAG 59.384 45.833 0.00 0.00 0.00 2.90
458 481 4.922692 GCGATACAGAAGATGAGAATGAGG 59.077 45.833 0.00 0.00 0.00 3.86
459 482 5.278709 GCGATACAGAAGATGAGAATGAGGA 60.279 44.000 0.00 0.00 0.00 3.71
460 483 6.737070 GCGATACAGAAGATGAGAATGAGGAA 60.737 42.308 0.00 0.00 0.00 3.36
461 484 7.205992 CGATACAGAAGATGAGAATGAGGAAA 58.794 38.462 0.00 0.00 0.00 3.13
462 485 7.871973 CGATACAGAAGATGAGAATGAGGAAAT 59.128 37.037 0.00 0.00 0.00 2.17
463 486 8.905660 ATACAGAAGATGAGAATGAGGAAATG 57.094 34.615 0.00 0.00 0.00 2.32
464 487 6.120905 ACAGAAGATGAGAATGAGGAAATGG 58.879 40.000 0.00 0.00 0.00 3.16
465 488 5.008811 CAGAAGATGAGAATGAGGAAATGGC 59.991 44.000 0.00 0.00 0.00 4.40
466 489 4.792513 AGATGAGAATGAGGAAATGGCT 57.207 40.909 0.00 0.00 0.00 4.75
467 490 5.901413 AGATGAGAATGAGGAAATGGCTA 57.099 39.130 0.00 0.00 0.00 3.93
468 491 6.257994 AGATGAGAATGAGGAAATGGCTAA 57.742 37.500 0.00 0.00 0.00 3.09
469 492 6.297582 AGATGAGAATGAGGAAATGGCTAAG 58.702 40.000 0.00 0.00 0.00 2.18
470 493 4.785301 TGAGAATGAGGAAATGGCTAAGG 58.215 43.478 0.00 0.00 0.00 2.69
471 494 4.228210 TGAGAATGAGGAAATGGCTAAGGT 59.772 41.667 0.00 0.00 0.00 3.50
472 495 5.196695 GAGAATGAGGAAATGGCTAAGGTT 58.803 41.667 0.00 0.00 0.00 3.50
473 496 6.069673 TGAGAATGAGGAAATGGCTAAGGTTA 60.070 38.462 0.00 0.00 0.00 2.85
474 497 6.122964 AGAATGAGGAAATGGCTAAGGTTAC 58.877 40.000 0.00 0.00 0.00 2.50
475 498 4.230745 TGAGGAAATGGCTAAGGTTACC 57.769 45.455 0.00 0.00 0.00 2.85
476 499 3.850173 TGAGGAAATGGCTAAGGTTACCT 59.150 43.478 0.00 0.00 33.87 3.08
477 500 4.080526 TGAGGAAATGGCTAAGGTTACCTC 60.081 45.833 3.62 0.00 40.89 3.85
478 501 3.850173 AGGAAATGGCTAAGGTTACCTCA 59.150 43.478 3.62 0.00 30.89 3.86
479 502 3.945921 GGAAATGGCTAAGGTTACCTCAC 59.054 47.826 3.62 0.00 30.89 3.51
480 503 3.646736 AATGGCTAAGGTTACCTCACC 57.353 47.619 3.62 7.36 37.04 4.02
481 504 0.899720 TGGCTAAGGTTACCTCACCG 59.100 55.000 3.62 0.00 42.33 4.94
482 505 0.900421 GGCTAAGGTTACCTCACCGT 59.100 55.000 3.62 0.00 42.33 4.83
483 506 1.405121 GGCTAAGGTTACCTCACCGTG 60.405 57.143 3.62 0.00 42.33 4.94
484 507 2.005560 GCTAAGGTTACCTCACCGTGC 61.006 57.143 3.62 0.00 42.33 5.34
485 508 0.244450 TAAGGTTACCTCACCGTGCG 59.756 55.000 3.62 0.00 42.33 5.34
486 509 1.466025 AAGGTTACCTCACCGTGCGA 61.466 55.000 3.62 0.00 42.33 5.10
487 510 1.735559 GGTTACCTCACCGTGCGAC 60.736 63.158 0.00 0.00 0.00 5.19
488 511 1.288127 GTTACCTCACCGTGCGACT 59.712 57.895 0.00 0.00 0.00 4.18
489 512 0.319297 GTTACCTCACCGTGCGACTT 60.319 55.000 0.00 0.00 0.00 3.01
490 513 1.068333 GTTACCTCACCGTGCGACTTA 60.068 52.381 0.00 0.00 0.00 2.24
491 514 1.246649 TACCTCACCGTGCGACTTAA 58.753 50.000 0.00 0.00 0.00 1.85
492 515 0.390124 ACCTCACCGTGCGACTTAAA 59.610 50.000 0.00 0.00 0.00 1.52
493 516 1.202557 ACCTCACCGTGCGACTTAAAA 60.203 47.619 0.00 0.00 0.00 1.52
494 517 2.073816 CCTCACCGTGCGACTTAAAAT 58.926 47.619 0.00 0.00 0.00 1.82
495 518 3.255725 CCTCACCGTGCGACTTAAAATA 58.744 45.455 0.00 0.00 0.00 1.40
496 519 3.680937 CCTCACCGTGCGACTTAAAATAA 59.319 43.478 0.00 0.00 0.00 1.40
497 520 4.435121 CCTCACCGTGCGACTTAAAATAAC 60.435 45.833 0.00 0.00 0.00 1.89
498 521 4.309099 TCACCGTGCGACTTAAAATAACT 58.691 39.130 0.00 0.00 0.00 2.24
499 522 4.150980 TCACCGTGCGACTTAAAATAACTG 59.849 41.667 0.00 0.00 0.00 3.16
500 523 3.434299 ACCGTGCGACTTAAAATAACTGG 59.566 43.478 0.00 0.00 0.00 4.00
501 524 3.680937 CCGTGCGACTTAAAATAACTGGA 59.319 43.478 0.00 0.00 0.00 3.86
502 525 4.331717 CCGTGCGACTTAAAATAACTGGAT 59.668 41.667 0.00 0.00 0.00 3.41
503 526 5.255596 CGTGCGACTTAAAATAACTGGATG 58.744 41.667 0.00 0.00 0.00 3.51
504 527 5.163893 CGTGCGACTTAAAATAACTGGATGT 60.164 40.000 0.00 0.00 0.00 3.06
505 528 6.035220 CGTGCGACTTAAAATAACTGGATGTA 59.965 38.462 0.00 0.00 0.00 2.29
506 529 7.399523 GTGCGACTTAAAATAACTGGATGTAG 58.600 38.462 0.00 0.00 0.00 2.74
507 530 7.064253 GTGCGACTTAAAATAACTGGATGTAGT 59.936 37.037 0.00 0.00 0.00 2.73
508 531 7.277098 TGCGACTTAAAATAACTGGATGTAGTC 59.723 37.037 0.00 0.00 0.00 2.59
509 532 7.277098 GCGACTTAAAATAACTGGATGTAGTCA 59.723 37.037 0.00 0.00 0.00 3.41
510 533 9.314321 CGACTTAAAATAACTGGATGTAGTCAT 57.686 33.333 0.00 0.00 36.95 3.06
539 562 4.305011 CCGGGTTGGCGTTATGAA 57.695 55.556 0.00 0.00 0.00 2.57
540 563 2.788515 CCGGGTTGGCGTTATGAAT 58.211 52.632 0.00 0.00 0.00 2.57
541 564 1.956297 CCGGGTTGGCGTTATGAATA 58.044 50.000 0.00 0.00 0.00 1.75
542 565 2.500229 CCGGGTTGGCGTTATGAATAT 58.500 47.619 0.00 0.00 0.00 1.28
543 566 2.225491 CCGGGTTGGCGTTATGAATATG 59.775 50.000 0.00 0.00 0.00 1.78
544 567 2.875933 CGGGTTGGCGTTATGAATATGT 59.124 45.455 0.00 0.00 0.00 2.29
545 568 3.059188 CGGGTTGGCGTTATGAATATGTC 60.059 47.826 0.00 0.00 0.00 3.06
546 569 3.059188 GGGTTGGCGTTATGAATATGTCG 60.059 47.826 0.00 0.00 0.00 4.35
547 570 3.059188 GGTTGGCGTTATGAATATGTCGG 60.059 47.826 0.00 0.00 0.00 4.79
548 571 3.737032 TGGCGTTATGAATATGTCGGA 57.263 42.857 0.00 0.00 0.00 4.55
549 572 4.265904 TGGCGTTATGAATATGTCGGAT 57.734 40.909 0.00 0.00 0.00 4.18
550 573 3.993736 TGGCGTTATGAATATGTCGGATG 59.006 43.478 0.00 0.00 0.00 3.51
551 574 3.181520 GGCGTTATGAATATGTCGGATGC 60.182 47.826 0.00 0.00 0.00 3.91
552 575 3.679980 GCGTTATGAATATGTCGGATGCT 59.320 43.478 0.00 0.00 0.00 3.79
553 576 4.862574 GCGTTATGAATATGTCGGATGCTA 59.137 41.667 0.00 0.00 0.00 3.49
554 577 5.347635 GCGTTATGAATATGTCGGATGCTAA 59.652 40.000 0.00 0.00 0.00 3.09
555 578 6.669977 GCGTTATGAATATGTCGGATGCTAAC 60.670 42.308 0.00 0.00 0.00 2.34
556 579 6.183360 CGTTATGAATATGTCGGATGCTAACC 60.183 42.308 0.00 0.00 0.00 2.85
562 585 2.202824 CGGATGCTAACCGGCGAA 60.203 61.111 9.30 0.00 45.65 4.70
563 586 2.237751 CGGATGCTAACCGGCGAAG 61.238 63.158 9.30 3.75 45.65 3.79
564 587 1.143183 GGATGCTAACCGGCGAAGA 59.857 57.895 9.30 0.00 34.52 2.87
565 588 1.152383 GGATGCTAACCGGCGAAGAC 61.152 60.000 9.30 0.39 34.52 3.01
580 603 4.773117 GACGCCCGTCGGACTGTC 62.773 72.222 14.39 13.24 43.86 3.51
583 606 4.353437 GCCCGTCGGACTGTCGTT 62.353 66.667 14.39 0.00 0.00 3.85
584 607 2.126580 CCCGTCGGACTGTCGTTC 60.127 66.667 14.39 0.00 0.00 3.95
585 608 2.623915 CCCGTCGGACTGTCGTTCT 61.624 63.158 14.39 0.00 0.00 3.01
586 609 1.300971 CCCGTCGGACTGTCGTTCTA 61.301 60.000 14.39 0.00 0.00 2.10
587 610 0.731417 CCGTCGGACTGTCGTTCTAT 59.269 55.000 4.91 0.00 0.00 1.98
588 611 1.267932 CCGTCGGACTGTCGTTCTATC 60.268 57.143 4.91 0.00 0.00 2.08
589 612 1.267932 CGTCGGACTGTCGTTCTATCC 60.268 57.143 6.57 0.00 0.00 2.59
590 613 2.015587 GTCGGACTGTCGTTCTATCCT 58.984 52.381 0.00 0.00 0.00 3.24
591 614 3.201290 GTCGGACTGTCGTTCTATCCTA 58.799 50.000 0.00 0.00 0.00 2.94
592 615 3.624861 GTCGGACTGTCGTTCTATCCTAA 59.375 47.826 0.00 0.00 0.00 2.69
593 616 3.624861 TCGGACTGTCGTTCTATCCTAAC 59.375 47.826 1.07 0.00 0.00 2.34
594 617 3.243002 CGGACTGTCGTTCTATCCTAACC 60.243 52.174 1.07 0.00 0.00 2.85
595 618 3.952967 GGACTGTCGTTCTATCCTAACCT 59.047 47.826 1.07 0.00 0.00 3.50
596 619 5.128919 GGACTGTCGTTCTATCCTAACCTA 58.871 45.833 1.07 0.00 0.00 3.08
597 620 5.239087 GGACTGTCGTTCTATCCTAACCTAG 59.761 48.000 1.07 0.00 0.00 3.02
598 621 4.579753 ACTGTCGTTCTATCCTAACCTAGC 59.420 45.833 0.00 0.00 0.00 3.42
599 622 3.562973 TGTCGTTCTATCCTAACCTAGCG 59.437 47.826 0.00 0.00 0.00 4.26
600 623 3.563390 GTCGTTCTATCCTAACCTAGCGT 59.437 47.826 0.00 0.00 0.00 5.07
601 624 4.036144 GTCGTTCTATCCTAACCTAGCGTT 59.964 45.833 2.75 2.75 38.57 4.84
602 625 4.036027 TCGTTCTATCCTAACCTAGCGTTG 59.964 45.833 6.81 0.00 35.79 4.10
603 626 4.036027 CGTTCTATCCTAACCTAGCGTTGA 59.964 45.833 6.81 0.00 35.79 3.18
604 627 5.280164 GTTCTATCCTAACCTAGCGTTGAC 58.720 45.833 6.81 0.00 35.79 3.18
605 628 3.887716 TCTATCCTAACCTAGCGTTGACC 59.112 47.826 6.81 0.00 35.79 4.02
606 629 0.813184 TCCTAACCTAGCGTTGACCG 59.187 55.000 6.81 0.00 35.79 4.79
607 630 0.529378 CCTAACCTAGCGTTGACCGT 59.471 55.000 6.81 0.00 39.32 4.83
608 631 1.468736 CCTAACCTAGCGTTGACCGTC 60.469 57.143 6.81 0.00 39.32 4.79
609 632 0.168788 TAACCTAGCGTTGACCGTCG 59.831 55.000 6.81 0.00 39.32 5.12
610 633 2.202570 CCTAGCGTTGACCGTCGG 60.203 66.667 10.48 10.48 39.32 4.79
611 634 2.564975 CTAGCGTTGACCGTCGGT 59.435 61.111 18.94 18.94 39.44 4.69
612 635 1.800315 CTAGCGTTGACCGTCGGTG 60.800 63.158 24.45 8.52 35.25 4.94
613 636 3.271706 TAGCGTTGACCGTCGGTGG 62.272 63.158 24.45 9.24 35.25 4.61
615 638 4.953868 CGTTGACCGTCGGTGGCA 62.954 66.667 24.45 12.04 35.25 4.92
616 639 2.358247 GTTGACCGTCGGTGGCAT 60.358 61.111 24.45 0.00 35.25 4.40
617 640 2.358125 TTGACCGTCGGTGGCATG 60.358 61.111 24.45 0.00 35.25 4.06
618 641 3.892740 TTGACCGTCGGTGGCATGG 62.893 63.158 24.45 0.00 35.25 3.66
619 642 4.077184 GACCGTCGGTGGCATGGA 62.077 66.667 24.45 0.00 35.25 3.41
620 643 4.388499 ACCGTCGGTGGCATGGAC 62.388 66.667 18.08 9.93 32.98 4.02
621 644 4.386951 CCGTCGGTGGCATGGACA 62.387 66.667 17.34 0.00 0.00 4.02
622 645 2.358125 CGTCGGTGGCATGGACAA 60.358 61.111 17.34 0.00 0.00 3.18
623 646 1.963855 CGTCGGTGGCATGGACAAA 60.964 57.895 17.34 0.00 0.00 2.83
624 647 1.305219 CGTCGGTGGCATGGACAAAT 61.305 55.000 17.34 0.00 0.00 2.32
625 648 1.745232 GTCGGTGGCATGGACAAATA 58.255 50.000 13.81 0.00 0.00 1.40
626 649 2.088423 GTCGGTGGCATGGACAAATAA 58.912 47.619 13.81 0.00 0.00 1.40
627 650 2.490115 GTCGGTGGCATGGACAAATAAA 59.510 45.455 13.81 0.00 0.00 1.40
628 651 3.130340 GTCGGTGGCATGGACAAATAAAT 59.870 43.478 13.81 0.00 0.00 1.40
629 652 3.766591 TCGGTGGCATGGACAAATAAATT 59.233 39.130 0.00 0.00 0.00 1.82
630 653 4.221703 TCGGTGGCATGGACAAATAAATTT 59.778 37.500 0.00 0.00 0.00 1.82
631 654 4.934602 CGGTGGCATGGACAAATAAATTTT 59.065 37.500 0.00 0.00 0.00 1.82
632 655 5.411053 CGGTGGCATGGACAAATAAATTTTT 59.589 36.000 0.00 0.00 0.00 1.94
648 671 3.437867 TTTTTGACGCGGTGGCAT 58.562 50.000 12.47 0.00 39.92 4.40
649 672 1.007964 TTTTTGACGCGGTGGCATG 60.008 52.632 12.47 0.00 39.92 4.06
650 673 2.413437 TTTTTGACGCGGTGGCATGG 62.413 55.000 12.47 0.00 39.92 3.66
651 674 3.834013 TTTGACGCGGTGGCATGGA 62.834 57.895 12.47 0.00 39.92 3.41
688 711 6.761099 GGGAATTTACCCTTTCTCTCTTTC 57.239 41.667 0.00 0.00 45.90 2.62
689 712 6.486056 GGGAATTTACCCTTTCTCTCTTTCT 58.514 40.000 0.00 0.00 45.90 2.52
692 715 9.516546 GGAATTTACCCTTTCTCTCTTTCTTTA 57.483 33.333 0.00 0.00 0.00 1.85
697 720 9.516546 TTACCCTTTCTCTCTTTCTTTATTTCC 57.483 33.333 0.00 0.00 0.00 3.13
698 721 6.655425 ACCCTTTCTCTCTTTCTTTATTTCCG 59.345 38.462 0.00 0.00 0.00 4.30
700 723 7.175119 CCCTTTCTCTCTTTCTTTATTTCCGTT 59.825 37.037 0.00 0.00 0.00 4.44
701 724 8.017946 CCTTTCTCTCTTTCTTTATTTCCGTTG 58.982 37.037 0.00 0.00 0.00 4.10
702 725 7.435068 TTCTCTCTTTCTTTATTTCCGTTGG 57.565 36.000 0.00 0.00 0.00 3.77
703 726 6.531021 TCTCTCTTTCTTTATTTCCGTTGGT 58.469 36.000 0.00 0.00 0.00 3.67
704 727 7.673180 TCTCTCTTTCTTTATTTCCGTTGGTA 58.327 34.615 0.00 0.00 0.00 3.25
705 728 7.817962 TCTCTCTTTCTTTATTTCCGTTGGTAG 59.182 37.037 0.00 0.00 0.00 3.18
706 729 7.673180 TCTCTTTCTTTATTTCCGTTGGTAGA 58.327 34.615 0.00 0.00 0.00 2.59
707 730 7.817962 TCTCTTTCTTTATTTCCGTTGGTAGAG 59.182 37.037 0.00 0.00 0.00 2.43
708 731 7.447594 TCTTTCTTTATTTCCGTTGGTAGAGT 58.552 34.615 0.00 0.00 0.00 3.24
709 732 8.587608 TCTTTCTTTATTTCCGTTGGTAGAGTA 58.412 33.333 0.00 0.00 0.00 2.59
710 733 8.767478 TTTCTTTATTTCCGTTGGTAGAGTAG 57.233 34.615 0.00 0.00 0.00 2.57
711 734 7.472334 TCTTTATTTCCGTTGGTAGAGTAGT 57.528 36.000 0.00 0.00 0.00 2.73
712 735 7.542025 TCTTTATTTCCGTTGGTAGAGTAGTC 58.458 38.462 0.00 0.00 0.00 2.59
713 736 4.732672 ATTTCCGTTGGTAGAGTAGTCC 57.267 45.455 0.00 0.00 0.00 3.85
731 754 1.997311 CACTCTGGCATCCCCTCCA 60.997 63.158 0.00 0.00 0.00 3.86
734 757 3.813724 CTGGCATCCCCTCCACCC 61.814 72.222 0.00 0.00 0.00 4.61
737 760 3.493303 GCATCCCCTCCACCCCTC 61.493 72.222 0.00 0.00 0.00 4.30
738 761 2.774351 CATCCCCTCCACCCCTCC 60.774 72.222 0.00 0.00 0.00 4.30
739 762 4.124126 ATCCCCTCCACCCCTCCC 62.124 72.222 0.00 0.00 0.00 4.30
742 765 3.373846 CCCTCCACCCCTCCCCTA 61.374 72.222 0.00 0.00 0.00 3.53
743 766 2.040779 CCTCCACCCCTCCCCTAC 60.041 72.222 0.00 0.00 0.00 3.18
744 767 2.040779 CTCCACCCCTCCCCTACC 60.041 72.222 0.00 0.00 0.00 3.18
745 768 2.542541 TCCACCCCTCCCCTACCT 60.543 66.667 0.00 0.00 0.00 3.08
746 769 1.231059 TCCACCCCTCCCCTACCTA 60.231 63.158 0.00 0.00 0.00 3.08
747 770 1.074699 CCACCCCTCCCCTACCTAC 60.075 68.421 0.00 0.00 0.00 3.18
748 771 1.074699 CACCCCTCCCCTACCTACC 60.075 68.421 0.00 0.00 0.00 3.18
749 772 1.231231 ACCCCTCCCCTACCTACCT 60.231 63.158 0.00 0.00 0.00 3.08
750 773 0.050023 ACCCCTCCCCTACCTACCTA 59.950 60.000 0.00 0.00 0.00 3.08
768 791 1.006813 TACCTACCTACGGGTCCCAA 58.993 55.000 9.12 0.00 45.98 4.12
788 811 1.596408 CCAAAGCGGGGGATTTTGG 59.404 57.895 1.32 1.32 43.26 3.28
789 812 1.191489 CCAAAGCGGGGGATTTTGGT 61.191 55.000 6.98 0.00 43.61 3.67
790 813 0.037419 CAAAGCGGGGGATTTTGGTG 60.037 55.000 0.00 0.00 0.00 4.17
791 814 1.191489 AAAGCGGGGGATTTTGGTGG 61.191 55.000 0.00 0.00 0.00 4.61
792 815 2.036572 GCGGGGGATTTTGGTGGA 59.963 61.111 0.00 0.00 0.00 4.02
793 816 1.381191 GCGGGGGATTTTGGTGGAT 60.381 57.895 0.00 0.00 0.00 3.41
794 817 0.975556 GCGGGGGATTTTGGTGGATT 60.976 55.000 0.00 0.00 0.00 3.01
795 818 1.111277 CGGGGGATTTTGGTGGATTC 58.889 55.000 0.00 0.00 0.00 2.52
811 834 3.814391 TTCGGTTCCCCTCCCCCAA 62.814 63.158 0.00 0.00 0.00 4.12
812 835 3.261677 CGGTTCCCCTCCCCCAAA 61.262 66.667 0.00 0.00 0.00 3.28
813 836 2.622447 CGGTTCCCCTCCCCCAAAT 61.622 63.158 0.00 0.00 0.00 2.32
814 837 1.310030 GGTTCCCCTCCCCCAAATC 59.690 63.158 0.00 0.00 0.00 2.17
815 838 1.221909 GGTTCCCCTCCCCCAAATCT 61.222 60.000 0.00 0.00 0.00 2.40
816 839 1.603634 GTTCCCCTCCCCCAAATCTA 58.396 55.000 0.00 0.00 0.00 1.98
873 918 2.437343 CGGTCACGCGCTTCTCTTC 61.437 63.158 5.73 0.00 0.00 2.87
904 954 0.748450 AGATGAGAGCAGAGCAGAGC 59.252 55.000 0.00 0.00 0.00 4.09
907 957 0.611340 TGAGAGCAGAGCAGAGCAGA 60.611 55.000 0.00 0.00 0.00 4.26
908 958 0.101759 GAGAGCAGAGCAGAGCAGAG 59.898 60.000 0.00 0.00 0.00 3.35
909 959 0.323633 AGAGCAGAGCAGAGCAGAGA 60.324 55.000 0.00 0.00 0.00 3.10
910 960 0.531657 GAGCAGAGCAGAGCAGAGAA 59.468 55.000 0.00 0.00 0.00 2.87
911 961 1.137479 GAGCAGAGCAGAGCAGAGAAT 59.863 52.381 0.00 0.00 0.00 2.40
912 962 1.134640 AGCAGAGCAGAGCAGAGAATG 60.135 52.381 0.00 0.00 0.00 2.67
913 963 1.134759 GCAGAGCAGAGCAGAGAATGA 60.135 52.381 0.00 0.00 0.00 2.57
914 964 2.484065 GCAGAGCAGAGCAGAGAATGAT 60.484 50.000 0.00 0.00 0.00 2.45
915 965 3.799366 CAGAGCAGAGCAGAGAATGATT 58.201 45.455 0.00 0.00 0.00 2.57
916 966 3.558006 CAGAGCAGAGCAGAGAATGATTG 59.442 47.826 0.00 0.00 0.00 2.67
917 967 3.451540 AGAGCAGAGCAGAGAATGATTGA 59.548 43.478 0.00 0.00 0.00 2.57
918 968 4.101898 AGAGCAGAGCAGAGAATGATTGAT 59.898 41.667 0.00 0.00 0.00 2.57
919 969 4.783055 AGCAGAGCAGAGAATGATTGATT 58.217 39.130 0.00 0.00 0.00 2.57
920 970 4.576873 AGCAGAGCAGAGAATGATTGATTG 59.423 41.667 0.00 0.00 0.00 2.67
950 1000 5.503002 TGATTGATTGATTGCAGAAGAGGA 58.497 37.500 0.00 0.00 0.00 3.71
951 1001 5.356190 TGATTGATTGATTGCAGAAGAGGAC 59.644 40.000 0.00 0.00 0.00 3.85
953 1003 2.099141 TTGATTGCAGAAGAGGACGG 57.901 50.000 0.00 0.00 0.00 4.79
954 1004 0.250234 TGATTGCAGAAGAGGACGGG 59.750 55.000 0.00 0.00 0.00 5.28
955 1005 1.078143 ATTGCAGAAGAGGACGGGC 60.078 57.895 0.00 0.00 0.00 6.13
957 1007 3.760035 GCAGAAGAGGACGGGCGA 61.760 66.667 0.00 0.00 0.00 5.54
958 1008 2.492090 CAGAAGAGGACGGGCGAG 59.508 66.667 0.00 0.00 0.00 5.03
1172 1245 0.322322 TGGCGACAATTCGGTACCTT 59.678 50.000 10.90 0.00 45.98 3.50
1175 1248 1.395954 GCGACAATTCGGTACCTTTCC 59.604 52.381 10.90 0.00 45.98 3.13
1176 1249 2.690786 CGACAATTCGGTACCTTTCCA 58.309 47.619 10.90 0.00 41.89 3.53
1177 1250 2.414138 CGACAATTCGGTACCTTTCCAC 59.586 50.000 10.90 0.00 41.89 4.02
1179 1252 2.374170 ACAATTCGGTACCTTTCCACCT 59.626 45.455 10.90 0.00 32.29 4.00
1180 1253 3.007635 CAATTCGGTACCTTTCCACCTC 58.992 50.000 10.90 0.00 32.29 3.85
1181 1254 2.019807 TTCGGTACCTTTCCACCTCT 57.980 50.000 10.90 0.00 32.29 3.69
1182 1255 1.553706 TCGGTACCTTTCCACCTCTC 58.446 55.000 10.90 0.00 32.29 3.20
1183 1256 1.076677 TCGGTACCTTTCCACCTCTCT 59.923 52.381 10.90 0.00 32.29 3.10
1184 1257 1.477295 CGGTACCTTTCCACCTCTCTC 59.523 57.143 10.90 0.00 32.29 3.20
1185 1258 2.822697 GGTACCTTTCCACCTCTCTCT 58.177 52.381 4.06 0.00 0.00 3.10
1186 1259 2.498078 GGTACCTTTCCACCTCTCTCTG 59.502 54.545 4.06 0.00 0.00 3.35
1187 1260 0.980423 ACCTTTCCACCTCTCTCTGC 59.020 55.000 0.00 0.00 0.00 4.26
1188 1261 1.274712 CCTTTCCACCTCTCTCTGCT 58.725 55.000 0.00 0.00 0.00 4.24
1189 1262 1.206849 CCTTTCCACCTCTCTCTGCTC 59.793 57.143 0.00 0.00 0.00 4.26
1190 1263 0.891373 TTTCCACCTCTCTCTGCTCG 59.109 55.000 0.00 0.00 0.00 5.03
1191 1264 0.967887 TTCCACCTCTCTCTGCTCGG 60.968 60.000 0.00 0.00 0.00 4.63
1192 1265 1.379176 CCACCTCTCTCTGCTCGGA 60.379 63.158 0.00 0.00 0.00 4.55
1206 1279 2.152297 CTCGGATGGATCTGGCCTCG 62.152 65.000 3.32 0.00 33.95 4.63
1228 1305 4.030641 CGCTATTCGATTCATCCATGTACG 59.969 45.833 0.00 0.00 41.67 3.67
1229 1306 4.923871 GCTATTCGATTCATCCATGTACGT 59.076 41.667 0.00 0.00 0.00 3.57
1276 1377 9.693739 TCTAGATTATAGATTCTGCTTAGGGAG 57.306 37.037 0.00 0.00 0.00 4.30
1277 1378 7.732222 AGATTATAGATTCTGCTTAGGGAGG 57.268 40.000 0.00 0.00 0.00 4.30
1279 1380 7.958583 AGATTATAGATTCTGCTTAGGGAGGAA 59.041 37.037 0.00 0.00 0.00 3.36
1280 1381 7.546250 TTATAGATTCTGCTTAGGGAGGAAG 57.454 40.000 0.00 0.00 0.00 3.46
1281 1382 3.044894 AGATTCTGCTTAGGGAGGAAGG 58.955 50.000 0.00 0.00 0.00 3.46
1282 1383 2.642171 TTCTGCTTAGGGAGGAAGGA 57.358 50.000 0.00 0.00 0.00 3.36
1283 1384 2.642171 TCTGCTTAGGGAGGAAGGAA 57.358 50.000 0.00 0.00 0.00 3.36
1284 1385 2.472029 TCTGCTTAGGGAGGAAGGAAG 58.528 52.381 0.00 0.00 0.00 3.46
1285 1386 0.912486 TGCTTAGGGAGGAAGGAAGC 59.088 55.000 0.00 0.00 42.27 3.86
1286 1387 0.912486 GCTTAGGGAGGAAGGAAGCA 59.088 55.000 0.00 0.00 41.69 3.91
1287 1388 1.407575 GCTTAGGGAGGAAGGAAGCAC 60.408 57.143 0.00 0.00 41.69 4.40
1289 1390 3.375699 CTTAGGGAGGAAGGAAGCACTA 58.624 50.000 0.00 0.00 0.00 2.74
1290 1391 1.872773 AGGGAGGAAGGAAGCACTAG 58.127 55.000 0.00 0.00 0.00 2.57
1291 1392 1.079658 AGGGAGGAAGGAAGCACTAGT 59.920 52.381 0.00 0.00 0.00 2.57
1293 1394 2.180276 GGAGGAAGGAAGCACTAGTGA 58.820 52.381 27.08 0.00 0.00 3.41
1296 1397 4.323868 GGAGGAAGGAAGCACTAGTGATTT 60.324 45.833 25.90 18.18 39.54 2.17
1297 1398 4.837972 AGGAAGGAAGCACTAGTGATTTC 58.162 43.478 25.90 24.01 39.54 2.17
1314 1430 5.125417 GTGATTTCCTTTCCGATCCATTCAA 59.875 40.000 0.00 0.00 0.00 2.69
1315 1431 5.893255 TGATTTCCTTTCCGATCCATTCAAT 59.107 36.000 0.00 0.00 0.00 2.57
1339 1455 9.936329 AATTCCACCCTAAATCACAATACTTAT 57.064 29.630 0.00 0.00 0.00 1.73
1340 1456 8.974060 TTCCACCCTAAATCACAATACTTATC 57.026 34.615 0.00 0.00 0.00 1.75
1403 1581 5.644977 TTCAGTCAGTCACACCTACATAG 57.355 43.478 0.00 0.00 0.00 2.23
1404 1582 4.663334 TCAGTCAGTCACACCTACATAGT 58.337 43.478 0.00 0.00 0.00 2.12
1405 1583 5.812286 TCAGTCAGTCACACCTACATAGTA 58.188 41.667 0.00 0.00 0.00 1.82
1406 1584 5.646793 TCAGTCAGTCACACCTACATAGTAC 59.353 44.000 0.00 0.00 0.00 2.73
1407 1585 5.648526 CAGTCAGTCACACCTACATAGTACT 59.351 44.000 0.00 0.00 0.00 2.73
1408 1586 6.822170 CAGTCAGTCACACCTACATAGTACTA 59.178 42.308 4.77 4.77 0.00 1.82
1409 1587 6.822676 AGTCAGTCACACCTACATAGTACTAC 59.177 42.308 4.31 0.00 0.00 2.73
1410 1588 6.596888 GTCAGTCACACCTACATAGTACTACA 59.403 42.308 4.31 0.00 0.00 2.74
1411 1589 7.282675 GTCAGTCACACCTACATAGTACTACAT 59.717 40.741 4.31 0.00 0.00 2.29
1412 1590 7.282450 TCAGTCACACCTACATAGTACTACATG 59.718 40.741 4.31 4.36 0.00 3.21
1413 1591 7.282450 CAGTCACACCTACATAGTACTACATGA 59.718 40.741 11.75 2.58 0.00 3.07
1414 1592 7.499563 AGTCACACCTACATAGTACTACATGAG 59.500 40.741 11.75 4.77 0.00 2.90
1415 1593 7.282675 GTCACACCTACATAGTACTACATGAGT 59.717 40.741 11.75 1.10 42.69 3.41
1416 1594 8.488668 TCACACCTACATAGTACTACATGAGTA 58.511 37.037 11.75 0.05 39.81 2.59
1543 1736 0.105964 CACCTTCACCCAAGTCGACA 59.894 55.000 19.50 0.00 0.00 4.35
1545 1738 1.002087 ACCTTCACCCAAGTCGACATC 59.998 52.381 19.50 0.00 0.00 3.06
1546 1739 1.001974 CCTTCACCCAAGTCGACATCA 59.998 52.381 19.50 0.00 0.00 3.07
1547 1740 2.069273 CTTCACCCAAGTCGACATCAC 58.931 52.381 19.50 0.00 0.00 3.06
1599 1804 2.430367 GACCAGGACACCACCACC 59.570 66.667 0.00 0.00 0.00 4.61
1600 1805 3.530910 GACCAGGACACCACCACCG 62.531 68.421 0.00 0.00 0.00 4.94
1601 1806 4.329545 CCAGGACACCACCACCGG 62.330 72.222 0.00 0.00 0.00 5.28
1602 1807 4.329545 CAGGACACCACCACCGGG 62.330 72.222 6.32 0.00 41.29 5.73
1903 2114 1.070445 TGCAGCCATTCAAAGGTTTGG 59.930 47.619 2.69 0.00 38.66 3.28
1958 2233 2.071778 AAAAGGCCTCATGTGTGTGT 57.928 45.000 5.23 0.00 0.00 3.72
1959 2234 1.321474 AAAGGCCTCATGTGTGTGTG 58.679 50.000 5.23 0.00 0.00 3.82
1983 2258 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1995 2270 7.698550 GTGTGTGTGTGTGTGAAATAATAACAA 59.301 33.333 0.00 0.00 0.00 2.83
2068 2343 1.718757 ATTCGCCAAAGAGCATCCGC 61.719 55.000 0.00 0.00 33.66 5.54
2069 2344 3.126879 CGCCAAAGAGCATCCGCA 61.127 61.111 0.00 0.00 42.27 5.69
2158 2433 7.254932 GGCCAGTTGATTGATGATAGAAACTAC 60.255 40.741 0.00 0.00 0.00 2.73
2200 2475 1.551883 GAATTCCCAATGCTGCAGGTT 59.448 47.619 17.12 0.00 0.00 3.50
2211 2486 1.328374 GCTGCAGGTTTGTTGCTTTTG 59.672 47.619 17.12 0.00 42.02 2.44
2219 2494 7.094634 TGCAGGTTTGTTGCTTTTGAAAAATAA 60.095 29.630 0.00 0.00 42.02 1.40
2222 2497 8.955388 AGGTTTGTTGCTTTTGAAAAATAATGT 58.045 25.926 0.00 0.00 0.00 2.71
2245 2526 6.874134 TGTTTTCTCAGGTCAGCTTAATAGAC 59.126 38.462 0.00 0.00 0.00 2.59
2302 2588 6.444704 ACCCTCTCAACATAAGGATCTCTTA 58.555 40.000 6.24 6.24 41.66 2.10
2304 2590 8.235230 ACCCTCTCAACATAAGGATCTCTTATA 58.765 37.037 13.06 2.23 44.46 0.98
2368 2658 4.516365 AAAAGGCTGAGCATGAAGAAAG 57.484 40.909 6.82 0.00 0.00 2.62
2369 2659 1.461559 AGGCTGAGCATGAAGAAAGC 58.538 50.000 6.82 0.00 0.00 3.51
2460 2801 9.841295 TTTTGTTTAATAATATCTACTCCCGCT 57.159 29.630 0.00 0.00 0.00 5.52
2463 2804 9.081204 TGTTTAATAATATCTACTCCCGCTGTA 57.919 33.333 0.00 0.00 0.00 2.74
2464 2805 9.351570 GTTTAATAATATCTACTCCCGCTGTAC 57.648 37.037 0.00 0.00 0.00 2.90
2467 2808 2.154567 ATCTACTCCCGCTGTACCAA 57.845 50.000 0.00 0.00 0.00 3.67
2474 2815 5.562298 ACTCCCGCTGTACCAAAATATAT 57.438 39.130 0.00 0.00 0.00 0.86
2477 2818 7.159372 ACTCCCGCTGTACCAAAATATATAAG 58.841 38.462 0.00 0.00 0.00 1.73
2478 2819 7.015877 ACTCCCGCTGTACCAAAATATATAAGA 59.984 37.037 0.00 0.00 0.00 2.10
2479 2820 7.156673 TCCCGCTGTACCAAAATATATAAGAC 58.843 38.462 0.00 0.00 0.00 3.01
2480 2821 6.090358 CCCGCTGTACCAAAATATATAAGACG 59.910 42.308 0.00 0.00 0.00 4.18
2490 2831 9.781834 CCAAAATATATAAGACGTTTTTGCAGA 57.218 29.630 10.75 0.00 34.40 4.26
2503 2862 9.774742 GACGTTTTTGCAGAAGATCTTATATTT 57.225 29.630 8.25 0.00 0.00 1.40
2516 2875 5.556006 TCTTATATTTTGGTACGGAGGGG 57.444 43.478 0.00 0.00 0.00 4.79
2543 2902 1.785041 TTTGCAGTCGCCTTGTGCTC 61.785 55.000 0.00 0.00 38.09 4.26
2544 2903 2.358003 GCAGTCGCCTTGTGCTCT 60.358 61.111 0.00 0.00 38.05 4.09
2545 2904 1.079819 GCAGTCGCCTTGTGCTCTA 60.080 57.895 0.00 0.00 38.05 2.43
2555 2916 4.868171 CGCCTTGTGCTCTAGTATGTAAAA 59.132 41.667 0.00 0.00 38.05 1.52
2565 2926 6.254589 GCTCTAGTATGTAAAACTGCTGAGTG 59.745 42.308 0.00 0.00 30.61 3.51
2630 2996 2.161609 GCAATCCTTCAAGTTACCACGG 59.838 50.000 0.00 0.00 0.00 4.94
2724 3090 5.070580 GGCCTCTACTACATATGGTGAGTTT 59.929 44.000 7.80 0.00 0.00 2.66
2725 3091 6.217294 GCCTCTACTACATATGGTGAGTTTC 58.783 44.000 7.80 0.00 0.00 2.78
2743 6163 2.253758 CCGTGCAACTGTGTGGAGG 61.254 63.158 0.00 0.00 31.75 4.30
2753 6173 5.294552 GCAACTGTGTGGAGGTAGATAATTC 59.705 44.000 0.00 0.00 0.00 2.17
2754 6174 5.263968 ACTGTGTGGAGGTAGATAATTCG 57.736 43.478 0.00 0.00 0.00 3.34
2755 6175 4.710375 ACTGTGTGGAGGTAGATAATTCGT 59.290 41.667 0.00 0.00 0.00 3.85
2756 6176 5.187186 ACTGTGTGGAGGTAGATAATTCGTT 59.813 40.000 0.00 0.00 0.00 3.85
2757 6177 6.045072 TGTGTGGAGGTAGATAATTCGTTT 57.955 37.500 0.00 0.00 0.00 3.60
2758 6178 6.469410 TGTGTGGAGGTAGATAATTCGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
2759 6179 6.938030 TGTGTGGAGGTAGATAATTCGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
2786 6206 2.182825 CGTCGCACAGATGTACTTACC 58.817 52.381 0.00 0.00 0.00 2.85
2793 6213 5.294306 CGCACAGATGTACTTACCAATCATT 59.706 40.000 0.00 0.00 0.00 2.57
2794 6214 6.489675 GCACAGATGTACTTACCAATCATTG 58.510 40.000 0.00 0.00 0.00 2.82
2795 6215 6.094048 GCACAGATGTACTTACCAATCATTGT 59.906 38.462 0.00 0.00 0.00 2.71
2796 6216 7.466805 CACAGATGTACTTACCAATCATTGTG 58.533 38.462 0.00 0.00 0.00 3.33
2799 6219 6.886459 AGATGTACTTACCAATCATTGTGCTT 59.114 34.615 0.00 0.00 0.00 3.91
2845 6280 1.198759 TAGTGGGGAAGGCACTGTCC 61.199 60.000 0.00 0.00 40.86 4.02
2854 6289 2.262915 GCACTGTCCCGAGACCTG 59.737 66.667 0.00 0.00 42.81 4.00
3016 6451 2.913060 GCGCGAGGGATAGGAGGT 60.913 66.667 12.10 0.00 0.00 3.85
3037 6472 1.670811 CTGAACCAAACGCTGTTGAGT 59.329 47.619 0.00 0.00 0.00 3.41
3166 6601 9.741647 GAGGGTCTTATTTGATTTGATTTGATC 57.258 33.333 0.00 0.00 0.00 2.92
3232 6691 1.340502 TGTCCTTTTGTGGTGCTGTGA 60.341 47.619 0.00 0.00 0.00 3.58
3236 6695 2.624838 CCTTTTGTGGTGCTGTGAGATT 59.375 45.455 0.00 0.00 0.00 2.40
3237 6696 3.068590 CCTTTTGTGGTGCTGTGAGATTT 59.931 43.478 0.00 0.00 0.00 2.17
3238 6697 4.441913 CCTTTTGTGGTGCTGTGAGATTTT 60.442 41.667 0.00 0.00 0.00 1.82
3297 6777 3.552273 GCACAATGAGATGCATCCAATCC 60.552 47.826 23.06 8.15 41.65 3.01
3298 6778 3.634910 CACAATGAGATGCATCCAATCCA 59.365 43.478 23.06 13.17 35.78 3.41
3299 6779 4.098807 CACAATGAGATGCATCCAATCCAA 59.901 41.667 23.06 0.35 35.78 3.53
3302 6782 3.493334 TGAGATGCATCCAATCCAATCC 58.507 45.455 23.06 0.00 0.00 3.01
3303 6783 3.117436 TGAGATGCATCCAATCCAATCCA 60.117 43.478 23.06 3.54 0.00 3.41
3304 6784 3.893200 GAGATGCATCCAATCCAATCCAA 59.107 43.478 23.06 0.00 0.00 3.53
3306 6786 4.527038 AGATGCATCCAATCCAATCCAATC 59.473 41.667 23.06 0.00 0.00 2.67
3307 6787 2.967201 TGCATCCAATCCAATCCAATCC 59.033 45.455 0.00 0.00 0.00 3.01
3356 6869 6.765036 TCAGATCAATCTAAGAATGCCACTTC 59.235 38.462 0.00 0.00 34.85 3.01
3357 6870 6.541278 CAGATCAATCTAAGAATGCCACTTCA 59.459 38.462 0.00 0.00 34.85 3.02
3358 6871 6.541641 AGATCAATCTAAGAATGCCACTTCAC 59.458 38.462 0.00 0.00 34.85 3.18
3361 6874 6.716628 TCAATCTAAGAATGCCACTTCACTTT 59.283 34.615 0.00 0.00 0.00 2.66
3363 6876 8.514594 CAATCTAAGAATGCCACTTCACTTTTA 58.485 33.333 0.00 0.00 0.00 1.52
3364 6877 8.814038 ATCTAAGAATGCCACTTCACTTTTAT 57.186 30.769 0.00 0.00 0.00 1.40
3366 6879 8.514594 TCTAAGAATGCCACTTCACTTTTATTG 58.485 33.333 0.00 0.00 0.00 1.90
3367 6880 5.473039 AGAATGCCACTTCACTTTTATTGC 58.527 37.500 0.00 0.00 0.00 3.56
3369 6882 4.241590 TGCCACTTCACTTTTATTGCTG 57.758 40.909 0.00 0.00 0.00 4.41
3372 6885 5.300539 TGCCACTTCACTTTTATTGCTGTTA 59.699 36.000 0.00 0.00 0.00 2.41
3373 6886 6.015519 TGCCACTTCACTTTTATTGCTGTTAT 60.016 34.615 0.00 0.00 0.00 1.89
3374 6887 6.528072 GCCACTTCACTTTTATTGCTGTTATC 59.472 38.462 0.00 0.00 0.00 1.75
3375 6888 7.575720 GCCACTTCACTTTTATTGCTGTTATCT 60.576 37.037 0.00 0.00 0.00 1.98
3376 6889 8.299570 CCACTTCACTTTTATTGCTGTTATCTT 58.700 33.333 0.00 0.00 0.00 2.40
3377 6890 9.683069 CACTTCACTTTTATTGCTGTTATCTTT 57.317 29.630 0.00 0.00 0.00 2.52
3410 6980 7.712639 TGGTGATAGTTAGAGAAAATGCATCTC 59.287 37.037 0.00 3.30 42.95 2.75
3444 7248 9.028185 GCAACCTAAAAATGAATGAATGAGATC 57.972 33.333 0.00 0.00 0.00 2.75
3559 7389 7.852550 AGATTCAGTCTATCTGGATGAATGA 57.147 36.000 3.64 5.58 42.03 2.57
3560 7390 7.898918 AGATTCAGTCTATCTGGATGAATGAG 58.101 38.462 3.64 0.00 42.03 2.90
3561 7391 7.510001 AGATTCAGTCTATCTGGATGAATGAGT 59.490 37.037 3.64 8.98 42.03 3.41
3562 7392 6.402456 TCAGTCTATCTGGATGAATGAGTG 57.598 41.667 8.11 0.00 43.76 3.51
3563 7393 6.131961 TCAGTCTATCTGGATGAATGAGTGA 58.868 40.000 0.00 0.00 43.76 3.41
3564 7394 6.608808 TCAGTCTATCTGGATGAATGAGTGAA 59.391 38.462 0.00 0.00 43.76 3.18
3565 7395 7.289549 TCAGTCTATCTGGATGAATGAGTGAAT 59.710 37.037 0.00 0.00 43.76 2.57
3615 7494 9.475620 TCTGGAGTACATAAATTCAGTCTTCTA 57.524 33.333 0.00 0.00 0.00 2.10
3616 7495 9.522804 CTGGAGTACATAAATTCAGTCTTCTAC 57.477 37.037 0.00 0.00 0.00 2.59
3617 7496 9.256228 TGGAGTACATAAATTCAGTCTTCTACT 57.744 33.333 0.00 0.00 39.81 2.57
3655 8476 8.477256 TGAAAACTGAATGGAAAGAAAGTGAAT 58.523 29.630 0.00 0.00 0.00 2.57
3657 8478 9.971922 AAAACTGAATGGAAAGAAAGTGAATAG 57.028 29.630 0.00 0.00 0.00 1.73
3660 8481 9.525826 ACTGAATGGAAAGAAAGTGAATAGATT 57.474 29.630 0.00 0.00 0.00 2.40
3662 8483 9.519191 TGAATGGAAAGAAAGTGAATAGATTCA 57.481 29.630 0.70 0.70 43.94 2.57
3719 9594 3.407698 TGACTCTGACTCTGACTCTGAC 58.592 50.000 0.00 0.00 0.00 3.51
3726 9601 0.179166 CTCTGACTCTGACTGAGCGC 60.179 60.000 0.00 0.00 46.41 5.92
3737 9612 2.359107 TGAGCGCCAGCCAGAAAG 60.359 61.111 2.29 0.00 46.67 2.62
3743 9618 0.801251 CGCCAGCCAGAAAGAAGAAG 59.199 55.000 0.00 0.00 0.00 2.85
3744 9619 1.609061 CGCCAGCCAGAAAGAAGAAGA 60.609 52.381 0.00 0.00 0.00 2.87
3745 9620 2.508526 GCCAGCCAGAAAGAAGAAGAA 58.491 47.619 0.00 0.00 0.00 2.52
3746 9621 2.487372 GCCAGCCAGAAAGAAGAAGAAG 59.513 50.000 0.00 0.00 0.00 2.85
3747 9622 3.808618 GCCAGCCAGAAAGAAGAAGAAGA 60.809 47.826 0.00 0.00 0.00 2.87
3748 9623 4.392940 CCAGCCAGAAAGAAGAAGAAGAA 58.607 43.478 0.00 0.00 0.00 2.52
3749 9624 5.008980 CCAGCCAGAAAGAAGAAGAAGAAT 58.991 41.667 0.00 0.00 0.00 2.40
3750 9625 6.176183 CCAGCCAGAAAGAAGAAGAAGAATA 58.824 40.000 0.00 0.00 0.00 1.75
3758 9633 4.376146 AGAAGAAGAAGAATATGCCGCTC 58.624 43.478 0.00 0.00 0.00 5.03
3794 9690 2.192443 CCATGCCAGAGCCAGAGG 59.808 66.667 0.00 0.00 38.69 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.272146 GGGGACATGGTGCGTGAT 59.728 61.111 0.00 0.00 0.00 3.06
27 28 4.776322 CCGCCGCTTCATCCACCA 62.776 66.667 0.00 0.00 0.00 4.17
31 36 1.136774 GAAAACCGCCGCTTCATCC 59.863 57.895 0.00 0.00 0.00 3.51
55 60 0.259065 TATCTGGTCTGAGGCGGAGT 59.741 55.000 0.00 0.00 0.00 3.85
72 77 1.339610 GCAGGACATCAGCGAGTCTAT 59.660 52.381 0.00 0.00 35.18 1.98
81 86 0.249238 GCGGAGTAGCAGGACATCAG 60.249 60.000 0.00 0.00 37.05 2.90
112 118 0.957888 GGCAGAGTTTGAGCTCACCC 60.958 60.000 18.03 9.90 37.94 4.61
136 142 0.101759 CAAATTCAGCATGGAGGCCG 59.898 55.000 0.00 0.00 36.16 6.13
138 144 0.179092 GCCAAATTCAGCATGGAGGC 60.179 55.000 0.00 0.00 36.27 4.70
152 158 1.210204 AGGAGGATGCTCAGGCCAAA 61.210 55.000 16.72 0.00 37.74 3.28
176 188 1.280133 CAAGAGGAGGAGCCACAATCA 59.720 52.381 0.00 0.00 40.02 2.57
196 208 2.872858 GAGATTGAAGATACGGGGCAAC 59.127 50.000 0.00 0.00 0.00 4.17
224 236 1.002857 AGGAATTGGAAGAGGTGGGG 58.997 55.000 0.00 0.00 0.00 4.96
229 241 1.139853 CCGAGGAGGAATTGGAAGAGG 59.860 57.143 0.00 0.00 45.00 3.69
239 251 1.346722 GAAGGTTTGACCGAGGAGGAA 59.653 52.381 0.00 0.00 44.90 3.36
249 261 1.897802 TCCGGAGTAGGAAGGTTTGAC 59.102 52.381 0.00 0.00 37.36 3.18
252 264 1.569653 CCTCCGGAGTAGGAAGGTTT 58.430 55.000 29.25 0.00 34.53 3.27
297 320 2.024588 CATCGGGCGGAAAATGCG 59.975 61.111 0.00 0.00 0.00 4.73
343 366 2.047274 CATCGTCCGCACCAAGGT 60.047 61.111 0.00 0.00 0.00 3.50
382 405 4.840680 TCTCTCTCTTCCACTTCCAATTCA 59.159 41.667 0.00 0.00 0.00 2.57
395 418 4.460263 TGCTCCATACTCTCTCTCTCTTC 58.540 47.826 0.00 0.00 0.00 2.87
396 419 4.464008 CTGCTCCATACTCTCTCTCTCTT 58.536 47.826 0.00 0.00 0.00 2.85
397 420 3.748668 GCTGCTCCATACTCTCTCTCTCT 60.749 52.174 0.00 0.00 0.00 3.10
398 421 2.554032 GCTGCTCCATACTCTCTCTCTC 59.446 54.545 0.00 0.00 0.00 3.20
399 422 2.091939 TGCTGCTCCATACTCTCTCTCT 60.092 50.000 0.00 0.00 0.00 3.10
400 423 2.294233 CTGCTGCTCCATACTCTCTCTC 59.706 54.545 0.00 0.00 0.00 3.20
401 424 2.309613 CTGCTGCTCCATACTCTCTCT 58.690 52.381 0.00 0.00 0.00 3.10
402 425 2.031120 ACTGCTGCTCCATACTCTCTC 58.969 52.381 0.00 0.00 0.00 3.20
403 426 1.755959 CACTGCTGCTCCATACTCTCT 59.244 52.381 0.00 0.00 0.00 3.10
404 427 1.753649 TCACTGCTGCTCCATACTCTC 59.246 52.381 0.00 0.00 0.00 3.20
405 428 1.480137 GTCACTGCTGCTCCATACTCT 59.520 52.381 0.00 0.00 0.00 3.24
406 429 1.480137 AGTCACTGCTGCTCCATACTC 59.520 52.381 0.00 0.00 0.00 2.59
407 430 1.206610 CAGTCACTGCTGCTCCATACT 59.793 52.381 0.00 0.00 0.00 2.12
408 431 1.066573 ACAGTCACTGCTGCTCCATAC 60.067 52.381 4.13 0.00 39.96 2.39
409 432 1.066645 CACAGTCACTGCTGCTCCATA 60.067 52.381 4.13 0.00 39.96 2.74
410 433 0.321387 CACAGTCACTGCTGCTCCAT 60.321 55.000 4.13 0.00 39.96 3.41
411 434 1.070275 CACAGTCACTGCTGCTCCA 59.930 57.895 4.13 0.00 39.96 3.86
412 435 2.323580 GCACAGTCACTGCTGCTCC 61.324 63.158 19.28 0.00 39.96 4.70
413 436 1.566882 CTGCACAGTCACTGCTGCTC 61.567 60.000 23.93 5.14 39.96 4.26
414 437 1.597302 CTGCACAGTCACTGCTGCT 60.597 57.895 23.93 0.00 39.96 4.24
415 438 1.596203 TCTGCACAGTCACTGCTGC 60.596 57.895 19.58 19.58 39.96 5.25
416 439 1.554891 CGTCTGCACAGTCACTGCTG 61.555 60.000 4.13 3.87 41.92 4.41
417 440 1.300465 CGTCTGCACAGTCACTGCT 60.300 57.895 4.13 0.00 34.37 4.24
418 441 2.947890 GCGTCTGCACAGTCACTGC 61.948 63.158 4.13 0.00 42.15 4.40
419 442 2.652079 CGCGTCTGCACAGTCACTG 61.652 63.158 2.22 2.22 42.97 3.66
420 443 2.147315 ATCGCGTCTGCACAGTCACT 62.147 55.000 5.77 0.00 42.97 3.41
421 444 0.456142 TATCGCGTCTGCACAGTCAC 60.456 55.000 5.77 0.00 42.97 3.67
422 445 0.456142 GTATCGCGTCTGCACAGTCA 60.456 55.000 5.77 0.00 42.97 3.41
423 446 0.456142 TGTATCGCGTCTGCACAGTC 60.456 55.000 5.77 0.00 42.97 3.51
424 447 0.456824 CTGTATCGCGTCTGCACAGT 60.457 55.000 5.77 0.00 42.97 3.55
425 448 0.179163 TCTGTATCGCGTCTGCACAG 60.179 55.000 5.77 13.03 41.53 3.66
426 449 0.242555 TTCTGTATCGCGTCTGCACA 59.757 50.000 5.77 3.53 42.97 4.57
427 450 0.917259 CTTCTGTATCGCGTCTGCAC 59.083 55.000 5.77 0.00 42.97 4.57
428 451 0.808755 TCTTCTGTATCGCGTCTGCA 59.191 50.000 5.77 3.96 42.97 4.41
429 452 1.783711 CATCTTCTGTATCGCGTCTGC 59.216 52.381 5.77 0.00 37.91 4.26
430 453 3.002759 TCTCATCTTCTGTATCGCGTCTG 59.997 47.826 5.77 2.80 0.00 3.51
431 454 3.206964 TCTCATCTTCTGTATCGCGTCT 58.793 45.455 5.77 0.00 0.00 4.18
432 455 3.610786 TCTCATCTTCTGTATCGCGTC 57.389 47.619 5.77 0.00 0.00 5.19
433 456 4.036852 TCATTCTCATCTTCTGTATCGCGT 59.963 41.667 5.77 0.00 0.00 6.01
434 457 4.540824 TCATTCTCATCTTCTGTATCGCG 58.459 43.478 0.00 0.00 0.00 5.87
435 458 4.922692 CCTCATTCTCATCTTCTGTATCGC 59.077 45.833 0.00 0.00 0.00 4.58
436 459 6.324561 TCCTCATTCTCATCTTCTGTATCG 57.675 41.667 0.00 0.00 0.00 2.92
437 460 8.991026 CATTTCCTCATTCTCATCTTCTGTATC 58.009 37.037 0.00 0.00 0.00 2.24
438 461 7.937942 CCATTTCCTCATTCTCATCTTCTGTAT 59.062 37.037 0.00 0.00 0.00 2.29
439 462 7.278135 CCATTTCCTCATTCTCATCTTCTGTA 58.722 38.462 0.00 0.00 0.00 2.74
440 463 6.120905 CCATTTCCTCATTCTCATCTTCTGT 58.879 40.000 0.00 0.00 0.00 3.41
441 464 5.008811 GCCATTTCCTCATTCTCATCTTCTG 59.991 44.000 0.00 0.00 0.00 3.02
442 465 5.104024 AGCCATTTCCTCATTCTCATCTTCT 60.104 40.000 0.00 0.00 0.00 2.85
443 466 5.131784 AGCCATTTCCTCATTCTCATCTTC 58.868 41.667 0.00 0.00 0.00 2.87
444 467 5.126699 AGCCATTTCCTCATTCTCATCTT 57.873 39.130 0.00 0.00 0.00 2.40
445 468 4.792513 AGCCATTTCCTCATTCTCATCT 57.207 40.909 0.00 0.00 0.00 2.90
446 469 5.472820 CCTTAGCCATTTCCTCATTCTCATC 59.527 44.000 0.00 0.00 0.00 2.92
447 470 5.103771 ACCTTAGCCATTTCCTCATTCTCAT 60.104 40.000 0.00 0.00 0.00 2.90
448 471 4.228210 ACCTTAGCCATTTCCTCATTCTCA 59.772 41.667 0.00 0.00 0.00 3.27
449 472 4.786425 ACCTTAGCCATTTCCTCATTCTC 58.214 43.478 0.00 0.00 0.00 2.87
450 473 4.870021 ACCTTAGCCATTTCCTCATTCT 57.130 40.909 0.00 0.00 0.00 2.40
451 474 5.299531 GGTAACCTTAGCCATTTCCTCATTC 59.700 44.000 0.00 0.00 0.00 2.67
452 475 5.044105 AGGTAACCTTAGCCATTTCCTCATT 60.044 40.000 0.00 0.00 37.17 2.57
453 476 4.478686 AGGTAACCTTAGCCATTTCCTCAT 59.521 41.667 0.00 0.00 37.17 2.90
454 477 3.850173 AGGTAACCTTAGCCATTTCCTCA 59.150 43.478 0.00 0.00 37.17 3.86
455 478 4.080526 TGAGGTAACCTTAGCCATTTCCTC 60.081 45.833 0.00 0.00 39.25 3.71
456 479 3.850173 TGAGGTAACCTTAGCCATTTCCT 59.150 43.478 0.00 0.00 31.76 3.36
457 480 3.945921 GTGAGGTAACCTTAGCCATTTCC 59.054 47.826 0.00 0.00 31.76 3.13
458 481 3.945921 GGTGAGGTAACCTTAGCCATTTC 59.054 47.826 0.00 0.00 37.24 2.17
459 482 3.621461 CGGTGAGGTAACCTTAGCCATTT 60.621 47.826 0.00 0.00 38.14 2.32
460 483 2.093128 CGGTGAGGTAACCTTAGCCATT 60.093 50.000 0.00 0.00 38.14 3.16
461 484 1.485066 CGGTGAGGTAACCTTAGCCAT 59.515 52.381 0.00 0.00 38.14 4.40
462 485 0.899720 CGGTGAGGTAACCTTAGCCA 59.100 55.000 0.00 0.00 38.14 4.75
463 486 0.900421 ACGGTGAGGTAACCTTAGCC 59.100 55.000 0.00 0.00 38.14 3.93
464 487 2.005560 GCACGGTGAGGTAACCTTAGC 61.006 57.143 13.29 0.00 38.14 3.09
465 488 1.734707 CGCACGGTGAGGTAACCTTAG 60.735 57.143 13.29 0.00 38.14 2.18
466 489 0.244450 CGCACGGTGAGGTAACCTTA 59.756 55.000 13.29 0.00 38.14 2.69
467 490 1.005394 CGCACGGTGAGGTAACCTT 60.005 57.895 13.29 0.00 38.14 3.50
468 491 1.904865 TCGCACGGTGAGGTAACCT 60.905 57.895 13.29 0.00 38.14 3.50
469 492 1.735559 GTCGCACGGTGAGGTAACC 60.736 63.158 13.29 0.00 36.82 2.85
470 493 0.319297 AAGTCGCACGGTGAGGTAAC 60.319 55.000 13.29 3.19 0.00 2.50
471 494 1.246649 TAAGTCGCACGGTGAGGTAA 58.753 50.000 13.29 0.00 0.00 2.85
472 495 1.246649 TTAAGTCGCACGGTGAGGTA 58.753 50.000 13.29 0.00 0.00 3.08
473 496 0.390124 TTTAAGTCGCACGGTGAGGT 59.610 50.000 13.29 0.84 0.00 3.85
474 497 1.504359 TTTTAAGTCGCACGGTGAGG 58.496 50.000 13.29 2.66 0.00 3.86
475 498 4.387862 AGTTATTTTAAGTCGCACGGTGAG 59.612 41.667 13.29 9.22 0.00 3.51
476 499 4.150980 CAGTTATTTTAAGTCGCACGGTGA 59.849 41.667 13.29 0.00 0.00 4.02
477 500 4.391358 CAGTTATTTTAAGTCGCACGGTG 58.609 43.478 3.15 3.15 0.00 4.94
478 501 3.434299 CCAGTTATTTTAAGTCGCACGGT 59.566 43.478 0.00 0.00 0.00 4.83
479 502 3.680937 TCCAGTTATTTTAAGTCGCACGG 59.319 43.478 0.00 0.00 0.00 4.94
480 503 4.914312 TCCAGTTATTTTAAGTCGCACG 57.086 40.909 0.00 0.00 0.00 5.34
481 504 6.178239 ACATCCAGTTATTTTAAGTCGCAC 57.822 37.500 0.00 0.00 0.00 5.34
482 505 7.101054 ACTACATCCAGTTATTTTAAGTCGCA 58.899 34.615 0.00 0.00 0.00 5.10
483 506 7.277098 TGACTACATCCAGTTATTTTAAGTCGC 59.723 37.037 0.00 0.00 33.92 5.19
484 507 8.697846 TGACTACATCCAGTTATTTTAAGTCG 57.302 34.615 0.00 0.00 33.92 4.18
500 523 1.864435 GCACCGTCCGATGACTACATC 60.864 57.143 0.00 0.00 46.50 3.06
501 524 0.102481 GCACCGTCCGATGACTACAT 59.898 55.000 0.00 0.00 39.47 2.29
502 525 1.509463 GCACCGTCCGATGACTACA 59.491 57.895 0.00 0.00 39.47 2.74
503 526 1.585521 CGCACCGTCCGATGACTAC 60.586 63.158 0.00 0.00 39.47 2.73
504 527 2.795973 CGCACCGTCCGATGACTA 59.204 61.111 0.00 0.00 39.47 2.59
505 528 4.796231 GCGCACCGTCCGATGACT 62.796 66.667 0.30 0.00 39.47 3.41
522 545 1.956297 TATTCATAACGCCAACCCGG 58.044 50.000 0.00 0.00 38.11 5.73
523 546 2.875933 ACATATTCATAACGCCAACCCG 59.124 45.455 0.00 0.00 0.00 5.28
524 547 3.059188 CGACATATTCATAACGCCAACCC 60.059 47.826 0.00 0.00 0.00 4.11
525 548 3.059188 CCGACATATTCATAACGCCAACC 60.059 47.826 0.00 0.00 0.00 3.77
526 549 3.805422 TCCGACATATTCATAACGCCAAC 59.195 43.478 0.00 0.00 0.00 3.77
527 550 4.061357 TCCGACATATTCATAACGCCAA 57.939 40.909 0.00 0.00 0.00 4.52
528 551 3.737032 TCCGACATATTCATAACGCCA 57.263 42.857 0.00 0.00 0.00 5.69
529 552 3.181520 GCATCCGACATATTCATAACGCC 60.182 47.826 0.00 0.00 0.00 5.68
530 553 3.679980 AGCATCCGACATATTCATAACGC 59.320 43.478 0.00 0.00 0.00 4.84
531 554 6.183360 GGTTAGCATCCGACATATTCATAACG 60.183 42.308 0.00 0.00 0.00 3.18
532 555 7.061752 GGTTAGCATCCGACATATTCATAAC 57.938 40.000 0.00 0.00 0.00 1.89
545 568 2.202824 TTCGCCGGTTAGCATCCG 60.203 61.111 1.90 7.15 46.49 4.18
546 569 1.143183 TCTTCGCCGGTTAGCATCC 59.857 57.895 1.90 0.00 0.00 3.51
547 570 1.480219 CGTCTTCGCCGGTTAGCATC 61.480 60.000 1.90 0.00 0.00 3.91
548 571 1.518572 CGTCTTCGCCGGTTAGCAT 60.519 57.895 1.90 0.00 0.00 3.79
549 572 2.126228 CGTCTTCGCCGGTTAGCA 60.126 61.111 1.90 0.00 0.00 3.49
560 583 3.745803 AGTCCGACGGGCGTCTTC 61.746 66.667 13.79 0.00 42.54 2.87
561 584 4.052229 CAGTCCGACGGGCGTCTT 62.052 66.667 13.79 0.00 42.54 3.01
563 586 4.773117 GACAGTCCGACGGGCGTC 62.773 72.222 21.37 21.37 41.40 5.19
566 589 4.353437 AACGACAGTCCGACGGGC 62.353 66.667 11.44 11.44 37.09 6.13
567 590 1.300971 TAGAACGACAGTCCGACGGG 61.301 60.000 15.25 0.00 37.09 5.28
568 591 0.731417 ATAGAACGACAGTCCGACGG 59.269 55.000 7.84 7.84 37.09 4.79
569 592 1.267932 GGATAGAACGACAGTCCGACG 60.268 57.143 0.00 0.00 38.79 5.12
570 593 2.015587 AGGATAGAACGACAGTCCGAC 58.984 52.381 0.00 0.00 34.19 4.79
571 594 2.414994 AGGATAGAACGACAGTCCGA 57.585 50.000 0.00 0.00 34.19 4.55
572 595 3.243002 GGTTAGGATAGAACGACAGTCCG 60.243 52.174 0.00 0.00 34.19 4.79
573 596 3.952967 AGGTTAGGATAGAACGACAGTCC 59.047 47.826 0.00 0.00 0.00 3.85
574 597 5.277925 GCTAGGTTAGGATAGAACGACAGTC 60.278 48.000 0.00 0.00 0.00 3.51
575 598 4.579753 GCTAGGTTAGGATAGAACGACAGT 59.420 45.833 0.00 0.00 0.00 3.55
576 599 4.319622 CGCTAGGTTAGGATAGAACGACAG 60.320 50.000 0.00 0.00 0.00 3.51
577 600 3.562973 CGCTAGGTTAGGATAGAACGACA 59.437 47.826 0.00 0.00 0.00 4.35
578 601 3.563390 ACGCTAGGTTAGGATAGAACGAC 59.437 47.826 0.00 0.00 0.00 4.34
579 602 3.813443 ACGCTAGGTTAGGATAGAACGA 58.187 45.455 0.00 0.00 0.00 3.85
580 603 4.036027 TCAACGCTAGGTTAGGATAGAACG 59.964 45.833 0.00 0.00 36.49 3.95
581 604 5.280164 GTCAACGCTAGGTTAGGATAGAAC 58.720 45.833 0.00 0.00 36.49 3.01
582 605 4.340381 GGTCAACGCTAGGTTAGGATAGAA 59.660 45.833 0.00 0.00 36.49 2.10
583 606 3.887716 GGTCAACGCTAGGTTAGGATAGA 59.112 47.826 0.00 0.00 36.49 1.98
584 607 3.304525 CGGTCAACGCTAGGTTAGGATAG 60.305 52.174 0.00 0.00 36.49 2.08
585 608 2.620115 CGGTCAACGCTAGGTTAGGATA 59.380 50.000 0.00 0.00 36.49 2.59
586 609 1.407979 CGGTCAACGCTAGGTTAGGAT 59.592 52.381 0.00 0.00 36.49 3.24
587 610 0.813184 CGGTCAACGCTAGGTTAGGA 59.187 55.000 0.00 0.00 36.49 2.94
588 611 3.340727 CGGTCAACGCTAGGTTAGG 57.659 57.895 0.00 0.00 36.49 2.69
599 622 2.358247 ATGCCACCGACGGTCAAC 60.358 61.111 18.72 10.03 31.02 3.18
600 623 2.358125 CATGCCACCGACGGTCAA 60.358 61.111 18.72 5.87 31.02 3.18
601 624 4.386951 CCATGCCACCGACGGTCA 62.387 66.667 18.72 14.01 31.02 4.02
602 625 4.077184 TCCATGCCACCGACGGTC 62.077 66.667 18.72 7.76 31.02 4.79
603 626 4.388499 GTCCATGCCACCGACGGT 62.388 66.667 15.37 15.37 35.62 4.83
604 627 3.892740 TTGTCCATGCCACCGACGG 62.893 63.158 13.61 13.61 0.00 4.79
605 628 1.305219 ATTTGTCCATGCCACCGACG 61.305 55.000 0.00 0.00 0.00 5.12
606 629 1.745232 TATTTGTCCATGCCACCGAC 58.255 50.000 0.00 0.00 0.00 4.79
607 630 2.498644 TTATTTGTCCATGCCACCGA 57.501 45.000 0.00 0.00 0.00 4.69
608 631 3.799281 ATTTATTTGTCCATGCCACCG 57.201 42.857 0.00 0.00 0.00 4.94
609 632 6.816134 AAAAATTTATTTGTCCATGCCACC 57.184 33.333 0.00 0.00 0.00 4.61
631 654 1.007964 CATGCCACCGCGTCAAAAA 60.008 52.632 4.92 0.00 38.08 1.94
632 655 2.642129 CATGCCACCGCGTCAAAA 59.358 55.556 4.92 0.00 38.08 2.44
633 656 3.361158 CCATGCCACCGCGTCAAA 61.361 61.111 4.92 0.00 38.08 2.69
634 657 4.321966 TCCATGCCACCGCGTCAA 62.322 61.111 4.92 0.00 38.08 3.18
637 660 3.918253 ATTGTCCATGCCACCGCGT 62.918 57.895 4.92 0.00 38.08 6.01
638 661 2.699768 AATTGTCCATGCCACCGCG 61.700 57.895 0.00 0.00 38.08 6.46
639 662 1.153784 CAATTGTCCATGCCACCGC 60.154 57.895 0.00 0.00 0.00 5.68
640 663 1.512230 CCAATTGTCCATGCCACCG 59.488 57.895 4.43 0.00 0.00 4.94
641 664 0.904394 ACCCAATTGTCCATGCCACC 60.904 55.000 4.43 0.00 0.00 4.61
642 665 1.750778 CTACCCAATTGTCCATGCCAC 59.249 52.381 4.43 0.00 0.00 5.01
643 666 1.341877 CCTACCCAATTGTCCATGCCA 60.342 52.381 4.43 0.00 0.00 4.92
644 667 1.064017 TCCTACCCAATTGTCCATGCC 60.064 52.381 4.43 0.00 0.00 4.40
645 668 2.301346 CTCCTACCCAATTGTCCATGC 58.699 52.381 4.43 0.00 0.00 4.06
646 669 2.423373 CCCTCCTACCCAATTGTCCATG 60.423 54.545 4.43 0.00 0.00 3.66
647 670 1.852965 CCCTCCTACCCAATTGTCCAT 59.147 52.381 4.43 0.00 0.00 3.41
648 671 1.203505 TCCCTCCTACCCAATTGTCCA 60.204 52.381 4.43 0.00 0.00 4.02
649 672 1.591768 TCCCTCCTACCCAATTGTCC 58.408 55.000 4.43 0.00 0.00 4.02
650 673 3.953542 ATTCCCTCCTACCCAATTGTC 57.046 47.619 4.43 0.00 0.00 3.18
651 674 4.692523 AAATTCCCTCCTACCCAATTGT 57.307 40.909 4.43 0.00 0.00 2.71
652 675 4.893524 GGTAAATTCCCTCCTACCCAATTG 59.106 45.833 0.00 0.00 0.00 2.32
684 707 7.668525 ACTCTACCAACGGAAATAAAGAAAG 57.331 36.000 0.00 0.00 0.00 2.62
688 711 6.755607 GGACTACTCTACCAACGGAAATAAAG 59.244 42.308 0.00 0.00 0.00 1.85
689 712 6.211184 TGGACTACTCTACCAACGGAAATAAA 59.789 38.462 0.00 0.00 0.00 1.40
692 715 4.081807 GTGGACTACTCTACCAACGGAAAT 60.082 45.833 0.00 0.00 35.40 2.17
694 717 2.821969 GTGGACTACTCTACCAACGGAA 59.178 50.000 0.00 0.00 35.40 4.30
696 719 2.444421 AGTGGACTACTCTACCAACGG 58.556 52.381 0.00 0.00 33.17 4.44
706 729 1.490574 GGATGCCAGAGTGGACTACT 58.509 55.000 0.00 0.00 40.96 2.57
707 730 0.466124 GGGATGCCAGAGTGGACTAC 59.534 60.000 0.00 0.00 40.96 2.73
708 731 0.691078 GGGGATGCCAGAGTGGACTA 60.691 60.000 5.30 0.00 40.96 2.59
709 732 1.997874 GGGGATGCCAGAGTGGACT 60.998 63.158 5.30 0.00 40.96 3.85
710 733 1.977293 GAGGGGATGCCAGAGTGGAC 61.977 65.000 5.30 0.00 40.96 4.02
711 734 1.690633 GAGGGGATGCCAGAGTGGA 60.691 63.158 5.30 0.00 40.96 4.02
712 735 2.750657 GGAGGGGATGCCAGAGTGG 61.751 68.421 5.30 0.00 41.55 4.00
713 736 1.997311 TGGAGGGGATGCCAGAGTG 60.997 63.158 5.30 0.00 0.00 3.51
720 743 3.493303 GAGGGGTGGAGGGGATGC 61.493 72.222 0.00 0.00 0.00 3.91
731 754 0.050023 TAGGTAGGTAGGGGAGGGGT 59.950 60.000 0.00 0.00 0.00 4.95
734 757 1.543600 AGGTAGGTAGGTAGGGGAGG 58.456 60.000 0.00 0.00 0.00 4.30
735 758 2.378208 GGTAGGTAGGTAGGTAGGGGAG 59.622 59.091 0.00 0.00 0.00 4.30
736 759 2.019632 AGGTAGGTAGGTAGGTAGGGGA 60.020 54.545 0.00 0.00 0.00 4.81
737 760 2.437182 AGGTAGGTAGGTAGGTAGGGG 58.563 57.143 0.00 0.00 0.00 4.79
738 761 3.008485 CGTAGGTAGGTAGGTAGGTAGGG 59.992 56.522 0.00 0.00 0.00 3.53
739 762 4.278975 CGTAGGTAGGTAGGTAGGTAGG 57.721 54.545 0.00 0.00 0.00 3.18
774 797 1.874299 ATCCACCAAAATCCCCCGCT 61.874 55.000 0.00 0.00 0.00 5.52
775 798 0.975556 AATCCACCAAAATCCCCCGC 60.976 55.000 0.00 0.00 0.00 6.13
777 800 1.111277 CGAATCCACCAAAATCCCCC 58.889 55.000 0.00 0.00 0.00 5.40
779 802 1.847328 ACCGAATCCACCAAAATCCC 58.153 50.000 0.00 0.00 0.00 3.85
780 803 2.165641 GGAACCGAATCCACCAAAATCC 59.834 50.000 1.99 0.00 39.42 3.01
781 804 2.165641 GGGAACCGAATCCACCAAAATC 59.834 50.000 8.45 0.00 40.86 2.17
783 806 1.623163 GGGAACCGAATCCACCAAAA 58.377 50.000 8.45 0.00 40.86 2.44
784 807 3.349879 GGGAACCGAATCCACCAAA 57.650 52.632 8.45 0.00 40.86 3.28
811 834 8.454494 AGAGATTGGATTGGATTGGATTAGATT 58.546 33.333 0.00 0.00 0.00 2.40
812 835 7.997915 AGAGATTGGATTGGATTGGATTAGAT 58.002 34.615 0.00 0.00 0.00 1.98
813 836 7.294245 AGAGAGATTGGATTGGATTGGATTAGA 59.706 37.037 0.00 0.00 0.00 2.10
814 837 7.460071 AGAGAGATTGGATTGGATTGGATTAG 58.540 38.462 0.00 0.00 0.00 1.73
815 838 7.398289 AGAGAGATTGGATTGGATTGGATTA 57.602 36.000 0.00 0.00 0.00 1.75
816 839 6.277064 AGAGAGATTGGATTGGATTGGATT 57.723 37.500 0.00 0.00 0.00 3.01
873 918 2.559668 GCTCTCATCTGATCTGAGGGAG 59.440 54.545 19.57 19.57 42.75 4.30
915 965 9.040939 GCAATCAATCAATCAATCAATCAATCA 57.959 29.630 0.00 0.00 0.00 2.57
916 966 9.040939 TGCAATCAATCAATCAATCAATCAATC 57.959 29.630 0.00 0.00 0.00 2.67
917 967 8.956533 TGCAATCAATCAATCAATCAATCAAT 57.043 26.923 0.00 0.00 0.00 2.57
918 968 8.254508 TCTGCAATCAATCAATCAATCAATCAA 58.745 29.630 0.00 0.00 0.00 2.57
919 969 7.777095 TCTGCAATCAATCAATCAATCAATCA 58.223 30.769 0.00 0.00 0.00 2.57
920 970 8.642908 TTCTGCAATCAATCAATCAATCAATC 57.357 30.769 0.00 0.00 0.00 2.67
950 1000 3.459063 GAACCCTAGCTCGCCCGT 61.459 66.667 0.00 0.00 0.00 5.28
951 1001 4.222847 GGAACCCTAGCTCGCCCG 62.223 72.222 0.00 0.00 0.00 6.13
953 1003 1.144276 GAAGGAACCCTAGCTCGCC 59.856 63.158 0.00 0.00 31.13 5.54
954 1004 0.103390 GAGAAGGAACCCTAGCTCGC 59.897 60.000 0.00 0.00 31.13 5.03
955 1005 0.747852 GGAGAAGGAACCCTAGCTCG 59.252 60.000 0.00 0.00 36.60 5.03
957 1007 2.473070 GAAGGAGAAGGAACCCTAGCT 58.527 52.381 0.00 0.00 31.13 3.32
958 1008 1.487142 GGAAGGAGAAGGAACCCTAGC 59.513 57.143 0.00 0.00 31.13 3.42
964 1030 3.560239 CCAAGGAAGGAAGGAGAAGGAAC 60.560 52.174 0.00 0.00 0.00 3.62
965 1031 2.644798 CCAAGGAAGGAAGGAGAAGGAA 59.355 50.000 0.00 0.00 0.00 3.36
1074 1147 2.987547 GTGACGGAGGTGTCGGGA 60.988 66.667 0.00 0.00 41.87 5.14
1172 1245 0.967887 CCGAGCAGAGAGAGGTGGAA 60.968 60.000 0.00 0.00 0.00 3.53
1175 1248 0.385029 CATCCGAGCAGAGAGAGGTG 59.615 60.000 0.00 0.00 0.00 4.00
1176 1249 0.754957 CCATCCGAGCAGAGAGAGGT 60.755 60.000 0.00 0.00 0.00 3.85
1177 1250 0.467106 TCCATCCGAGCAGAGAGAGG 60.467 60.000 0.00 0.00 0.00 3.69
1179 1252 1.144708 AGATCCATCCGAGCAGAGAGA 59.855 52.381 0.00 0.00 0.00 3.10
1180 1253 1.270274 CAGATCCATCCGAGCAGAGAG 59.730 57.143 0.00 0.00 0.00 3.20
1181 1254 1.326328 CAGATCCATCCGAGCAGAGA 58.674 55.000 0.00 0.00 0.00 3.10
1182 1255 0.317799 CCAGATCCATCCGAGCAGAG 59.682 60.000 0.00 0.00 0.00 3.35
1183 1256 1.752358 GCCAGATCCATCCGAGCAGA 61.752 60.000 0.00 0.00 0.00 4.26
1184 1257 1.301558 GCCAGATCCATCCGAGCAG 60.302 63.158 0.00 0.00 0.00 4.24
1185 1258 2.811514 GGCCAGATCCATCCGAGCA 61.812 63.158 0.00 0.00 0.00 4.26
1186 1259 2.031768 GGCCAGATCCATCCGAGC 59.968 66.667 0.00 0.00 0.00 5.03
1187 1260 1.670590 GAGGCCAGATCCATCCGAG 59.329 63.158 5.01 0.00 0.00 4.63
1188 1261 2.203082 CGAGGCCAGATCCATCCGA 61.203 63.158 5.01 0.00 0.00 4.55
1189 1262 2.341543 CGAGGCCAGATCCATCCG 59.658 66.667 5.01 0.00 0.00 4.18
1190 1263 1.188219 TAGCGAGGCCAGATCCATCC 61.188 60.000 5.01 0.00 0.00 3.51
1191 1264 0.901124 ATAGCGAGGCCAGATCCATC 59.099 55.000 5.01 0.00 0.00 3.51
1192 1265 1.277557 GAATAGCGAGGCCAGATCCAT 59.722 52.381 5.01 0.00 0.00 3.41
1206 1279 4.923871 ACGTACATGGATGAATCGAATAGC 59.076 41.667 3.49 0.00 0.00 2.97
1271 1372 1.079658 ACTAGTGCTTCCTTCCTCCCT 59.920 52.381 0.00 0.00 0.00 4.20
1272 1373 1.208293 CACTAGTGCTTCCTTCCTCCC 59.792 57.143 10.54 0.00 0.00 4.30
1273 1374 2.180276 TCACTAGTGCTTCCTTCCTCC 58.820 52.381 18.45 0.00 0.00 4.30
1274 1375 4.479786 AATCACTAGTGCTTCCTTCCTC 57.520 45.455 18.45 0.00 0.00 3.71
1275 1376 4.323868 GGAAATCACTAGTGCTTCCTTCCT 60.324 45.833 30.53 11.96 38.33 3.36
1276 1377 3.942115 GGAAATCACTAGTGCTTCCTTCC 59.058 47.826 30.53 24.22 38.33 3.46
1277 1378 4.837972 AGGAAATCACTAGTGCTTCCTTC 58.162 43.478 32.76 22.34 43.72 3.46
1279 1380 4.917906 AAGGAAATCACTAGTGCTTCCT 57.082 40.909 32.76 32.76 45.89 3.36
1280 1381 4.396478 GGAAAGGAAATCACTAGTGCTTCC 59.604 45.833 30.62 30.62 40.03 3.46
1281 1382 4.093556 CGGAAAGGAAATCACTAGTGCTTC 59.906 45.833 18.45 19.91 0.00 3.86
1282 1383 4.003648 CGGAAAGGAAATCACTAGTGCTT 58.996 43.478 18.45 12.19 0.00 3.91
1283 1384 3.260884 TCGGAAAGGAAATCACTAGTGCT 59.739 43.478 18.45 5.58 0.00 4.40
1284 1385 3.596214 TCGGAAAGGAAATCACTAGTGC 58.404 45.455 18.45 3.83 0.00 4.40
1285 1386 4.811557 GGATCGGAAAGGAAATCACTAGTG 59.188 45.833 17.17 17.17 0.00 2.74
1286 1387 4.469945 TGGATCGGAAAGGAAATCACTAGT 59.530 41.667 0.00 0.00 0.00 2.57
1287 1388 5.023533 TGGATCGGAAAGGAAATCACTAG 57.976 43.478 0.00 0.00 0.00 2.57
1289 1390 4.510167 ATGGATCGGAAAGGAAATCACT 57.490 40.909 0.00 0.00 0.00 3.41
1290 1391 4.640201 TGAATGGATCGGAAAGGAAATCAC 59.360 41.667 0.00 0.00 0.00 3.06
1291 1392 4.854173 TGAATGGATCGGAAAGGAAATCA 58.146 39.130 0.00 0.00 0.00 2.57
1293 1394 6.183360 GGAATTGAATGGATCGGAAAGGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
1296 1397 4.207165 GGAATTGAATGGATCGGAAAGGA 58.793 43.478 0.00 0.00 0.00 3.36
1297 1398 3.953612 TGGAATTGAATGGATCGGAAAGG 59.046 43.478 0.00 0.00 0.00 3.11
1314 1430 9.574516 GATAAGTATTGTGATTTAGGGTGGAAT 57.425 33.333 0.00 0.00 0.00 3.01
1315 1431 8.778059 AGATAAGTATTGTGATTTAGGGTGGAA 58.222 33.333 0.00 0.00 0.00 3.53
1388 1566 7.344134 TCATGTAGTACTATGTAGGTGTGACT 58.656 38.462 5.75 0.00 0.00 3.41
1404 1582 7.956328 ACTGAGAATTGGTACTCATGTAGTA 57.044 36.000 0.00 0.00 41.35 1.82
1405 1583 6.859112 ACTGAGAATTGGTACTCATGTAGT 57.141 37.500 0.00 0.00 41.35 2.73
1406 1584 8.470805 AGTTACTGAGAATTGGTACTCATGTAG 58.529 37.037 0.00 0.00 41.35 2.74
1407 1585 8.362464 AGTTACTGAGAATTGGTACTCATGTA 57.638 34.615 0.00 0.00 41.35 2.29
1408 1586 7.039011 TGAGTTACTGAGAATTGGTACTCATGT 60.039 37.037 0.00 0.00 41.35 3.21
1409 1587 7.323420 TGAGTTACTGAGAATTGGTACTCATG 58.677 38.462 0.00 0.00 41.35 3.07
1410 1588 7.482169 TGAGTTACTGAGAATTGGTACTCAT 57.518 36.000 0.00 0.00 41.35 2.90
1411 1589 6.911250 TGAGTTACTGAGAATTGGTACTCA 57.089 37.500 0.00 0.00 40.22 3.41
1412 1590 8.254508 AGATTGAGTTACTGAGAATTGGTACTC 58.745 37.037 0.00 0.00 0.00 2.59
1413 1591 8.140112 AGATTGAGTTACTGAGAATTGGTACT 57.860 34.615 0.00 0.00 0.00 2.73
1414 1592 8.035394 TGAGATTGAGTTACTGAGAATTGGTAC 58.965 37.037 0.00 0.00 0.00 3.34
1415 1593 8.134202 TGAGATTGAGTTACTGAGAATTGGTA 57.866 34.615 0.00 0.00 0.00 3.25
1416 1594 7.009179 TGAGATTGAGTTACTGAGAATTGGT 57.991 36.000 0.00 0.00 0.00 3.67
1417 1595 7.912056 TTGAGATTGAGTTACTGAGAATTGG 57.088 36.000 0.00 0.00 0.00 3.16
1418 1596 9.381033 AGATTGAGATTGAGTTACTGAGAATTG 57.619 33.333 0.00 0.00 0.00 2.32
1419 1597 9.598517 GAGATTGAGATTGAGTTACTGAGAATT 57.401 33.333 0.00 0.00 0.00 2.17
1420 1598 8.980596 AGAGATTGAGATTGAGTTACTGAGAAT 58.019 33.333 0.00 0.00 0.00 2.40
1421 1599 8.359875 AGAGATTGAGATTGAGTTACTGAGAA 57.640 34.615 0.00 0.00 0.00 2.87
1422 1600 7.833682 AGAGAGATTGAGATTGAGTTACTGAGA 59.166 37.037 0.00 0.00 0.00 3.27
1427 1605 9.651913 AAGAAAGAGAGATTGAGATTGAGTTAC 57.348 33.333 0.00 0.00 0.00 2.50
1611 1816 1.137825 GTGGAGCTTCTCGTCCTCG 59.862 63.158 0.00 0.00 33.57 4.63
1614 1819 1.216710 CCTGTGGAGCTTCTCGTCC 59.783 63.158 0.00 0.00 0.00 4.79
1903 2114 5.621193 ACCAGCCATATATACAGAAACCAC 58.379 41.667 0.00 0.00 0.00 4.16
1958 2233 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1959 2234 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1995 2270 1.742411 CGACGCATGGTGGGAAGTATT 60.742 52.381 0.00 0.00 34.12 1.89
2068 2343 2.290768 CCTTGGATAGCCCATCTGGATG 60.291 54.545 0.00 3.79 46.10 3.51
2069 2344 1.991070 CCTTGGATAGCCCATCTGGAT 59.009 52.381 0.00 0.00 46.10 3.41
2158 2433 1.405821 GGAGATGTGTAGGTCCAGACG 59.594 57.143 0.00 0.00 0.00 4.18
2211 2486 8.084684 AGCTGACCTGAGAAAACATTATTTTTC 58.915 33.333 0.00 0.93 43.18 2.29
2219 2494 7.550906 GTCTATTAAGCTGACCTGAGAAAACAT 59.449 37.037 0.00 0.00 0.00 2.71
2222 2497 6.071560 TCGTCTATTAAGCTGACCTGAGAAAA 60.072 38.462 0.00 0.00 0.00 2.29
2226 2501 4.902443 TCGTCTATTAAGCTGACCTGAG 57.098 45.455 0.00 0.00 0.00 3.35
2227 2502 5.359860 TCAATCGTCTATTAAGCTGACCTGA 59.640 40.000 0.00 0.00 0.00 3.86
2245 2526 2.867109 AGGCCTGGGAATATCAATCG 57.133 50.000 3.11 0.00 0.00 3.34
2311 2600 4.686554 GCTCTATGTCAGTTGTTCGACTTT 59.313 41.667 0.00 0.00 33.18 2.66
2317 2606 4.193826 TCCTGCTCTATGTCAGTTGTTC 57.806 45.455 0.00 0.00 0.00 3.18
2327 2616 7.680588 GCCTTTTAAGAATGTTCCTGCTCTATG 60.681 40.741 0.00 0.00 0.00 2.23
2368 2658 2.408050 AGATAGGTCGATCAAATGCGC 58.592 47.619 0.00 0.00 0.00 6.09
2369 2659 3.906998 AGAGATAGGTCGATCAAATGCG 58.093 45.455 0.00 0.00 0.00 4.73
2463 2804 9.567848 CTGCAAAAACGTCTTATATATTTTGGT 57.432 29.630 15.63 0.00 37.90 3.67
2464 2805 9.781834 TCTGCAAAAACGTCTTATATATTTTGG 57.218 29.630 15.63 4.67 37.90 3.28
2474 2815 6.861065 AAGATCTTCTGCAAAAACGTCTTA 57.139 33.333 0.88 0.00 0.00 2.10
2477 2818 9.774742 AAATATAAGATCTTCTGCAAAAACGTC 57.225 29.630 12.24 0.00 0.00 4.34
2486 2827 7.656137 TCCGTACCAAAATATAAGATCTTCTGC 59.344 37.037 12.24 0.00 0.00 4.26
2487 2828 9.197694 CTCCGTACCAAAATATAAGATCTTCTG 57.802 37.037 12.24 1.50 0.00 3.02
2490 2831 7.450903 CCCTCCGTACCAAAATATAAGATCTT 58.549 38.462 13.56 13.56 0.00 2.40
2491 2832 6.013639 CCCCTCCGTACCAAAATATAAGATCT 60.014 42.308 0.00 0.00 0.00 2.75
2503 2862 0.638292 ATCTACCCCCTCCGTACCAA 59.362 55.000 0.00 0.00 0.00 3.67
2507 2866 2.112998 CAAACATCTACCCCCTCCGTA 58.887 52.381 0.00 0.00 0.00 4.02
2509 2868 0.463833 GCAAACATCTACCCCCTCCG 60.464 60.000 0.00 0.00 0.00 4.63
2516 2875 0.727398 GGCGACTGCAAACATCTACC 59.273 55.000 0.00 0.00 45.35 3.18
2543 2902 7.316640 ACTCACTCAGCAGTTTTACATACTAG 58.683 38.462 0.00 0.00 0.00 2.57
2544 2903 7.228314 ACTCACTCAGCAGTTTTACATACTA 57.772 36.000 0.00 0.00 0.00 1.82
2545 2904 6.102897 ACTCACTCAGCAGTTTTACATACT 57.897 37.500 0.00 0.00 0.00 2.12
2555 2916 8.260818 ACATAATAATGTTACTCACTCAGCAGT 58.739 33.333 0.00 0.00 44.07 4.40
2587 2948 8.688747 TTGCAAAACATTTTCCTGGAATATTT 57.311 26.923 10.45 1.27 0.00 1.40
2588 2949 8.866970 ATTGCAAAACATTTTCCTGGAATATT 57.133 26.923 10.45 0.00 0.00 1.28
2630 2996 1.800681 GCCAATACACAGAACCGGC 59.199 57.895 0.00 0.00 0.00 6.13
2724 3090 1.227527 CTCCACACAGTTGCACGGA 60.228 57.895 0.00 0.00 0.00 4.69
2725 3091 2.253758 CCTCCACACAGTTGCACGG 61.254 63.158 0.00 0.00 0.00 4.94
2762 6182 2.717044 TACATCTGTGCGACGGGGG 61.717 63.158 0.00 0.00 0.00 5.40
2767 6187 3.226346 TGGTAAGTACATCTGTGCGAC 57.774 47.619 0.00 0.00 35.74 5.19
2786 6206 4.491676 CTGGAAAGGAAGCACAATGATTG 58.508 43.478 3.16 3.16 0.00 2.67
2796 6216 3.813443 TGAGATATGCTGGAAAGGAAGC 58.187 45.455 0.00 0.00 39.96 3.86
2799 6219 4.202398 GGACATGAGATATGCTGGAAAGGA 60.202 45.833 0.00 0.00 0.00 3.36
2969 6404 1.817099 GCCAGATCCTTGACGCCAG 60.817 63.158 0.00 0.00 0.00 4.85
2977 6412 0.627451 TGCCAGAATGCCAGATCCTT 59.373 50.000 0.00 0.00 31.97 3.36
3016 6451 1.939934 CTCAACAGCGTTTGGTTCAGA 59.060 47.619 1.11 0.00 0.00 3.27
3037 6472 1.290955 CGGACCGCCAAACAGTCTA 59.709 57.895 0.00 0.00 0.00 2.59
3166 6601 5.342433 TCACATGTTTCTTTTGTGCAGAAG 58.658 37.500 0.00 0.00 40.38 2.85
3261 6731 4.313282 TCATTGTGCTGTCTTCTCTTCTG 58.687 43.478 0.00 0.00 0.00 3.02
3297 6777 4.401519 AGTGAGCTTGATTGGATTGGATTG 59.598 41.667 0.00 0.00 0.00 2.67
3298 6778 4.607239 AGTGAGCTTGATTGGATTGGATT 58.393 39.130 0.00 0.00 0.00 3.01
3299 6779 4.246712 AGTGAGCTTGATTGGATTGGAT 57.753 40.909 0.00 0.00 0.00 3.41
3381 6894 9.851686 ATGCATTTTCTCTAACTATCACCAATA 57.148 29.630 0.00 0.00 0.00 1.90
3383 6896 8.049117 AGATGCATTTTCTCTAACTATCACCAA 58.951 33.333 0.00 0.00 0.00 3.67
3384 6897 7.568349 AGATGCATTTTCTCTAACTATCACCA 58.432 34.615 0.00 0.00 0.00 4.17
3385 6898 7.930865 AGAGATGCATTTTCTCTAACTATCACC 59.069 37.037 15.18 0.00 46.26 4.02
3386 6899 8.885494 AGAGATGCATTTTCTCTAACTATCAC 57.115 34.615 15.18 0.00 46.26 3.06
3410 6980 7.652909 TCATTCATTTTTAGGTTGCTCAACAAG 59.347 33.333 13.89 0.00 42.85 3.16
3416 6986 8.246180 TCTCATTCATTCATTTTTAGGTTGCTC 58.754 33.333 0.00 0.00 0.00 4.26
3418 6988 8.937634 ATCTCATTCATTCATTTTTAGGTTGC 57.062 30.769 0.00 0.00 0.00 4.17
3444 7248 5.892160 AATGGACTCAAGATGTTGACATG 57.108 39.130 0.23 0.00 37.79 3.21
3497 7313 9.988815 ATCTACAACTAATAGATGCTTTGGTAG 57.011 33.333 0.00 0.00 37.87 3.18
3542 7372 8.557864 CAAATTCACTCATTCATCCAGATAGAC 58.442 37.037 0.00 0.00 0.00 2.59
3543 7373 8.488668 TCAAATTCACTCATTCATCCAGATAGA 58.511 33.333 0.00 0.00 0.00 1.98
3544 7374 8.672823 TCAAATTCACTCATTCATCCAGATAG 57.327 34.615 0.00 0.00 0.00 2.08
3545 7375 9.636789 ATTCAAATTCACTCATTCATCCAGATA 57.363 29.630 0.00 0.00 0.00 1.98
3549 7379 7.706100 TCATTCAAATTCACTCATTCATCCA 57.294 32.000 0.00 0.00 0.00 3.41
3550 7380 9.031360 CATTCATTCAAATTCACTCATTCATCC 57.969 33.333 0.00 0.00 0.00 3.51
3551 7381 9.797556 TCATTCATTCAAATTCACTCATTCATC 57.202 29.630 0.00 0.00 0.00 2.92
3556 7386 9.378551 CCAATTCATTCATTCAAATTCACTCAT 57.621 29.630 0.00 0.00 0.00 2.90
3559 7389 9.953565 AATCCAATTCATTCATTCAAATTCACT 57.046 25.926 0.00 0.00 0.00 3.41
3625 7758 9.500785 ACTTTCTTTCCATTCAGTTTTCAAAAA 57.499 25.926 0.00 0.00 0.00 1.94
3655 8476 6.697395 TCCATTCTTTCTTGTCGTGAATCTA 58.303 36.000 0.00 0.00 0.00 1.98
3657 8478 5.862924 TCCATTCTTTCTTGTCGTGAATC 57.137 39.130 0.00 0.00 0.00 2.52
3660 8481 6.633500 AAAATCCATTCTTTCTTGTCGTGA 57.367 33.333 0.00 0.00 0.00 4.35
3661 8482 8.853345 CATAAAAATCCATTCTTTCTTGTCGTG 58.147 33.333 0.00 0.00 0.00 4.35
3662 8483 7.542130 GCATAAAAATCCATTCTTTCTTGTCGT 59.458 33.333 0.00 0.00 0.00 4.34
3663 8484 7.541783 TGCATAAAAATCCATTCTTTCTTGTCG 59.458 33.333 0.00 0.00 0.00 4.35
3664 8485 8.761575 TGCATAAAAATCCATTCTTTCTTGTC 57.238 30.769 0.00 0.00 0.00 3.18
3719 9594 2.359107 TTTCTGGCTGGCGCTCAG 60.359 61.111 18.16 18.16 46.03 3.35
3726 9601 4.013267 TCTTCTTCTTCTTTCTGGCTGG 57.987 45.455 0.00 0.00 0.00 4.85
3737 9612 3.496507 GGAGCGGCATATTCTTCTTCTTC 59.503 47.826 1.45 0.00 0.00 2.87
3743 9618 2.533318 CCGGAGCGGCATATTCTTC 58.467 57.895 0.00 0.00 41.17 2.87
3744 9619 4.779475 CCGGAGCGGCATATTCTT 57.221 55.556 0.00 0.00 41.17 2.52
3776 9672 2.516460 CTCTGGCTCTGGCATGGC 60.516 66.667 13.29 13.29 40.87 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.