Multiple sequence alignment - TraesCS5D01G561700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G561700 chr5D 100.000 2855 0 0 1 2855 562028013 562030867 0.000000e+00 5273
1 TraesCS5D01G561700 chr5D 83.875 769 112 11 1036 1798 561573001 561572239 0.000000e+00 723
2 TraesCS5D01G561700 chr5D 79.773 440 83 5 1292 1728 426639844 426640280 5.940000e-82 315
3 TraesCS5D01G561700 chr5D 81.448 221 38 3 417 635 533002886 533003105 8.130000e-41 178
4 TraesCS5D01G561700 chr7B 88.944 1420 80 34 777 2144 783040 781646 0.000000e+00 1681
5 TraesCS5D01G561700 chr7B 96.190 105 4 0 2697 2801 781188 781084 3.780000e-39 172
6 TraesCS5D01G561700 chr7B 79.310 232 43 3 409 637 164504457 164504228 1.060000e-34 158
7 TraesCS5D01G561700 chr5B 92.360 1021 53 10 997 2006 712397202 712398208 0.000000e+00 1430
8 TraesCS5D01G561700 chr5B 79.371 572 54 16 1 528 712396223 712396774 7.570000e-91 344
9 TraesCS5D01G561700 chr5B 80.192 313 34 14 2234 2540 712400878 712401168 2.880000e-50 209
10 TraesCS5D01G561700 chr4D 84.094 767 108 10 1039 1798 504597468 504598227 0.000000e+00 728
11 TraesCS5D01G561700 chr5A 83.029 766 118 8 1039 1798 689251934 689252693 0.000000e+00 684
12 TraesCS5D01G561700 chr5A 80.000 440 82 5 1292 1728 540682010 540682446 1.280000e-83 320
13 TraesCS5D01G561700 chr2A 84.775 578 63 17 1033 1589 170602960 170603533 8.940000e-155 556
14 TraesCS5D01G561700 chr2A 80.086 698 127 11 1036 1728 29721480 29720790 2.540000e-140 508
15 TraesCS5D01G561700 chr2B 84.256 578 66 13 1033 1589 216708502 216709075 9.000000e-150 540
16 TraesCS5D01G561700 chr2B 79.516 703 128 14 1033 1728 43232946 43233639 1.190000e-133 486
17 TraesCS5D01G561700 chr2B 80.349 229 39 6 409 634 374253871 374254096 4.890000e-38 169
18 TraesCS5D01G561700 chr2B 87.234 141 18 0 1589 1729 216710519 216710659 8.190000e-36 161
19 TraesCS5D01G561700 chr2D 84.055 577 69 11 1033 1589 159573855 159574428 4.190000e-148 534
20 TraesCS5D01G561700 chr3D 83.784 222 34 2 414 634 8676504 8676724 2.880000e-50 209
21 TraesCS5D01G561700 chr1A 83.043 230 30 8 409 636 202090706 202090928 1.730000e-47 200
22 TraesCS5D01G561700 chr7A 82.684 231 33 7 409 637 43250734 43250509 6.240000e-47 198
23 TraesCS5D01G561700 chr6D 80.617 227 35 5 412 636 290322728 290322947 1.760000e-37 167
24 TraesCS5D01G561700 chr6A 81.159 207 34 3 405 607 601467181 601467386 8.190000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G561700 chr5D 562028013 562030867 2854 False 5273.0 5273 100.000000 1 2855 1 chr5D.!!$F3 2854
1 TraesCS5D01G561700 chr5D 561572239 561573001 762 True 723.0 723 83.875000 1036 1798 1 chr5D.!!$R1 762
2 TraesCS5D01G561700 chr7B 781084 783040 1956 True 926.5 1681 92.567000 777 2801 2 chr7B.!!$R2 2024
3 TraesCS5D01G561700 chr5B 712396223 712401168 4945 False 661.0 1430 83.974333 1 2540 3 chr5B.!!$F1 2539
4 TraesCS5D01G561700 chr4D 504597468 504598227 759 False 728.0 728 84.094000 1039 1798 1 chr4D.!!$F1 759
5 TraesCS5D01G561700 chr5A 689251934 689252693 759 False 684.0 684 83.029000 1039 1798 1 chr5A.!!$F2 759
6 TraesCS5D01G561700 chr2A 170602960 170603533 573 False 556.0 556 84.775000 1033 1589 1 chr2A.!!$F1 556
7 TraesCS5D01G561700 chr2A 29720790 29721480 690 True 508.0 508 80.086000 1036 1728 1 chr2A.!!$R1 692
8 TraesCS5D01G561700 chr2B 43232946 43233639 693 False 486.0 486 79.516000 1033 1728 1 chr2B.!!$F1 695
9 TraesCS5D01G561700 chr2B 216708502 216710659 2157 False 350.5 540 85.745000 1033 1729 2 chr2B.!!$F3 696
10 TraesCS5D01G561700 chr2D 159573855 159574428 573 False 534.0 534 84.055000 1033 1589 1 chr2D.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 573 0.035152 TCAAGATGATGTGCCGGCTT 60.035 50.0 29.7 12.77 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 6478 0.105039 GGAGGGAGCTACAACCATCG 59.895 60.0 0.0 0.0 37.77 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.088589 TCTAAAGTGGAAAAATGATAGCAGC 57.911 36.000 0.00 0.00 0.00 5.25
77 78 7.756722 CAGCAGAGAAAATTGGTTAAATAGGTG 59.243 37.037 0.00 0.00 0.00 4.00
81 82 9.362151 AGAGAAAATTGGTTAAATAGGTGACAA 57.638 29.630 0.00 0.00 0.00 3.18
110 111 4.439426 GCAATATGTTGGTGTTCCGCAATA 60.439 41.667 4.23 0.00 35.83 1.90
115 116 1.529226 TGGTGTTCCGCAATACTTGG 58.471 50.000 0.00 0.00 36.30 3.61
116 117 0.170339 GGTGTTCCGCAATACTTGGC 59.830 55.000 0.00 0.00 0.00 4.52
117 118 0.170339 GTGTTCCGCAATACTTGGCC 59.830 55.000 0.00 0.00 0.00 5.36
120 121 0.037590 TTCCGCAATACTTGGCCACT 59.962 50.000 3.88 0.00 0.00 4.00
144 147 2.887152 ACCAGTGTTGAAGCCTCATTTC 59.113 45.455 0.00 0.00 0.00 2.17
147 150 1.266718 GTGTTGAAGCCTCATTTCGCA 59.733 47.619 0.00 0.00 0.00 5.10
157 160 1.064621 CATTTCGCAATGAGCCCGG 59.935 57.895 1.13 0.00 42.35 5.73
158 161 2.774799 ATTTCGCAATGAGCCCGGC 61.775 57.895 0.00 0.00 41.38 6.13
163 166 4.545706 CAATGAGCCCGGCCGCTA 62.546 66.667 22.85 3.28 39.87 4.26
164 167 3.560251 AATGAGCCCGGCCGCTAT 61.560 61.111 22.85 6.80 39.87 2.97
165 168 2.214216 AATGAGCCCGGCCGCTATA 61.214 57.895 22.85 5.56 39.87 1.31
166 169 1.553690 AATGAGCCCGGCCGCTATAT 61.554 55.000 22.85 7.78 39.87 0.86
167 170 1.961180 ATGAGCCCGGCCGCTATATC 61.961 60.000 22.85 13.05 39.87 1.63
190 193 1.149627 TCCTGTCCAAACCCAACCG 59.850 57.895 0.00 0.00 0.00 4.44
206 209 3.585862 CAACCGTAGAGTAAGCACATGT 58.414 45.455 0.00 0.00 0.00 3.21
212 215 6.040247 CCGTAGAGTAAGCACATGTTCATAA 58.960 40.000 0.00 0.00 0.00 1.90
213 216 6.533723 CCGTAGAGTAAGCACATGTTCATAAA 59.466 38.462 0.00 0.00 0.00 1.40
214 217 7.064134 CCGTAGAGTAAGCACATGTTCATAAAA 59.936 37.037 0.00 0.00 0.00 1.52
215 218 8.110612 CGTAGAGTAAGCACATGTTCATAAAAG 58.889 37.037 0.00 0.00 0.00 2.27
216 219 7.383102 AGAGTAAGCACATGTTCATAAAAGG 57.617 36.000 0.00 0.00 0.00 3.11
217 220 5.954335 AGTAAGCACATGTTCATAAAAGGC 58.046 37.500 0.00 0.00 0.00 4.35
218 221 3.874392 AGCACATGTTCATAAAAGGCC 57.126 42.857 0.00 0.00 0.00 5.19
219 222 3.434309 AGCACATGTTCATAAAAGGCCT 58.566 40.909 0.00 0.00 0.00 5.19
220 223 3.834231 AGCACATGTTCATAAAAGGCCTT 59.166 39.130 13.78 13.78 0.00 4.35
221 224 3.928375 GCACATGTTCATAAAAGGCCTTG 59.072 43.478 21.33 7.40 0.00 3.61
243 246 8.802267 CCTTGGATTCTTTGTCCTAAAACATTA 58.198 33.333 0.00 0.00 36.68 1.90
244 247 9.626045 CTTGGATTCTTTGTCCTAAAACATTAC 57.374 33.333 0.00 0.00 36.68 1.89
252 255 8.588290 TTTGTCCTAAAACATTACATAGCCAT 57.412 30.769 0.00 0.00 0.00 4.40
257 281 9.120538 TCCTAAAACATTACATAGCCATTCTTC 57.879 33.333 0.00 0.00 0.00 2.87
267 291 5.649831 ACATAGCCATTCTTCTTGGTTCTTC 59.350 40.000 0.00 0.00 36.57 2.87
271 295 3.189287 CCATTCTTCTTGGTTCTTCGTGG 59.811 47.826 0.00 0.00 0.00 4.94
306 330 9.899226 TTCTTCTACGATTGATAGATACACATG 57.101 33.333 0.00 0.00 0.00 3.21
307 331 9.067986 TCTTCTACGATTGATAGATACACATGT 57.932 33.333 0.00 0.00 0.00 3.21
310 334 9.503399 TCTACGATTGATAGATACACATGTAGT 57.497 33.333 0.00 1.92 33.52 2.73
335 374 9.191995 GTATGAGACTAAACCCAACAAATTTTG 57.808 33.333 7.59 7.59 0.00 2.44
374 417 9.403583 GGTTTGTCCCTAAACTATGATCATTTA 57.596 33.333 14.65 6.66 39.78 1.40
403 446 1.128692 CGATCGAAAGTTCTTGGCACC 59.871 52.381 10.26 0.00 0.00 5.01
437 482 7.404671 TTTTCTGGATTTATTTCAGGCCTAC 57.595 36.000 3.98 0.00 0.00 3.18
439 484 4.476846 TCTGGATTTATTTCAGGCCTACCA 59.523 41.667 3.98 3.51 39.06 3.25
452 497 1.007336 CCTACCAGTGACGTGCGTTC 61.007 60.000 0.00 0.00 0.00 3.95
453 498 0.039437 CTACCAGTGACGTGCGTTCT 60.039 55.000 0.00 0.00 0.00 3.01
458 503 2.279851 TGACGTGCGTTCTGTGGG 60.280 61.111 0.00 0.00 0.00 4.61
461 506 2.029073 CGTGCGTTCTGTGGGAGT 59.971 61.111 0.00 0.00 0.00 3.85
466 511 0.601558 GCGTTCTGTGGGAGTAGACA 59.398 55.000 0.00 0.00 0.00 3.41
469 514 3.512680 CGTTCTGTGGGAGTAGACATTC 58.487 50.000 0.00 0.00 0.00 2.67
475 520 0.384669 GGGAGTAGACATTCCCGTCG 59.615 60.000 0.00 0.00 43.40 5.12
477 522 1.065251 GGAGTAGACATTCCCGTCGAC 59.935 57.143 5.18 5.18 40.58 4.20
480 525 2.941720 AGTAGACATTCCCGTCGACTAC 59.058 50.000 14.70 5.89 46.11 2.73
494 539 2.029739 TCGACTACGAAGGCATTTGTGA 60.030 45.455 14.18 0.00 45.74 3.58
528 573 0.035152 TCAAGATGATGTGCCGGCTT 60.035 50.000 29.70 12.77 0.00 4.35
531 576 0.833287 AGATGATGTGCCGGCTTAGT 59.167 50.000 29.70 11.11 0.00 2.24
532 577 1.202580 AGATGATGTGCCGGCTTAGTC 60.203 52.381 29.70 19.55 0.00 2.59
533 578 0.833287 ATGATGTGCCGGCTTAGTCT 59.167 50.000 29.70 6.09 0.00 3.24
534 579 0.613260 TGATGTGCCGGCTTAGTCTT 59.387 50.000 29.70 10.57 0.00 3.01
535 580 1.291132 GATGTGCCGGCTTAGTCTTC 58.709 55.000 29.70 14.98 0.00 2.87
536 581 0.613260 ATGTGCCGGCTTAGTCTTCA 59.387 50.000 29.70 13.21 0.00 3.02
537 582 0.394938 TGTGCCGGCTTAGTCTTCAA 59.605 50.000 29.70 0.00 0.00 2.69
538 583 1.079503 GTGCCGGCTTAGTCTTCAAG 58.920 55.000 29.70 0.00 0.00 3.02
547 592 2.929531 TAGTCTTCAAGAGCTGCTCG 57.070 50.000 22.77 10.78 35.36 5.03
549 594 2.163509 AGTCTTCAAGAGCTGCTCGTA 58.836 47.619 22.77 10.34 35.36 3.43
553 598 0.323451 TCAAGAGCTGCTCGTAGGGA 60.323 55.000 22.77 11.34 35.36 4.20
554 599 0.749649 CAAGAGCTGCTCGTAGGGAT 59.250 55.000 22.77 1.68 35.36 3.85
555 600 1.957177 CAAGAGCTGCTCGTAGGGATA 59.043 52.381 22.77 0.00 35.36 2.59
556 601 1.904287 AGAGCTGCTCGTAGGGATAG 58.096 55.000 22.77 0.00 35.36 2.08
558 603 1.081108 GCTGCTCGTAGGGATAGCG 60.081 63.158 0.00 0.00 39.14 4.26
559 604 1.797211 GCTGCTCGTAGGGATAGCGT 61.797 60.000 0.00 0.00 39.14 5.07
560 605 0.039978 CTGCTCGTAGGGATAGCGTG 60.040 60.000 0.00 0.00 39.14 5.34
562 607 1.233019 GCTCGTAGGGATAGCGTGTA 58.767 55.000 0.00 0.00 0.00 2.90
563 608 1.069364 GCTCGTAGGGATAGCGTGTAC 60.069 57.143 0.00 0.00 0.00 2.90
564 609 1.194098 CTCGTAGGGATAGCGTGTACG 59.806 57.143 0.00 0.00 43.27 3.67
566 611 1.333524 CGTAGGGATAGCGTGTACGTG 60.334 57.143 0.00 0.00 42.22 4.49
567 612 0.664761 TAGGGATAGCGTGTACGTGC 59.335 55.000 0.00 0.00 42.22 5.34
568 613 1.942712 GGGATAGCGTGTACGTGCG 60.943 63.158 0.00 0.98 42.22 5.34
569 614 1.226491 GGATAGCGTGTACGTGCGT 60.226 57.895 0.00 2.05 42.22 5.24
570 615 1.469126 GGATAGCGTGTACGTGCGTG 61.469 60.000 7.55 0.00 42.22 5.34
571 616 2.062890 GATAGCGTGTACGTGCGTGC 62.063 60.000 11.06 11.06 42.22 5.34
574 619 3.684315 CGTGTACGTGCGTGCGTT 61.684 61.111 11.14 0.00 43.04 4.84
575 620 2.166985 GTGTACGTGCGTGCGTTC 59.833 61.111 11.14 7.46 43.04 3.95
576 621 2.278661 TGTACGTGCGTGCGTTCA 60.279 55.556 11.14 9.71 43.04 3.18
577 622 1.662133 TGTACGTGCGTGCGTTCAT 60.662 52.632 11.14 0.00 43.04 2.57
578 623 0.386985 TGTACGTGCGTGCGTTCATA 60.387 50.000 11.14 0.00 43.04 2.15
579 624 0.293723 GTACGTGCGTGCGTTCATAG 59.706 55.000 11.14 0.00 43.04 2.23
580 625 0.799152 TACGTGCGTGCGTTCATAGG 60.799 55.000 11.14 0.00 43.04 2.57
581 626 2.798501 CGTGCGTGCGTTCATAGGG 61.799 63.158 0.00 0.00 0.00 3.53
582 627 2.125310 TGCGTGCGTTCATAGGGG 60.125 61.111 0.00 0.00 0.00 4.79
590 635 2.007049 GCGTTCATAGGGGTGAGTGTG 61.007 57.143 0.00 0.00 0.00 3.82
591 636 1.275291 CGTTCATAGGGGTGAGTGTGT 59.725 52.381 0.00 0.00 0.00 3.72
593 638 2.024176 TCATAGGGGTGAGTGTGTGT 57.976 50.000 0.00 0.00 0.00 3.72
596 641 1.764571 TAGGGGTGAGTGTGTGTGCC 61.765 60.000 0.00 0.00 0.00 5.01
610 655 3.865745 GTGTGTGCCTATGTATGAGTGTC 59.134 47.826 0.00 0.00 0.00 3.67
614 659 4.036380 TGTGCCTATGTATGAGTGTCTACG 59.964 45.833 0.00 0.00 0.00 3.51
615 660 4.036498 GTGCCTATGTATGAGTGTCTACGT 59.964 45.833 0.00 0.00 0.00 3.57
616 661 4.275196 TGCCTATGTATGAGTGTCTACGTC 59.725 45.833 0.00 0.00 0.00 4.34
617 662 4.515944 GCCTATGTATGAGTGTCTACGTCT 59.484 45.833 0.00 0.00 0.00 4.18
618 663 5.699915 GCCTATGTATGAGTGTCTACGTCTA 59.300 44.000 0.00 0.00 0.00 2.59
621 666 8.871862 CCTATGTATGAGTGTCTACGTCTATAC 58.128 40.741 0.00 0.00 0.00 1.47
622 667 9.642327 CTATGTATGAGTGTCTACGTCTATACT 57.358 37.037 0.00 0.00 0.00 2.12
623 668 7.710766 TGTATGAGTGTCTACGTCTATACTG 57.289 40.000 0.00 0.00 0.00 2.74
624 669 7.270779 TGTATGAGTGTCTACGTCTATACTGT 58.729 38.462 0.00 0.00 0.00 3.55
625 670 6.606234 ATGAGTGTCTACGTCTATACTGTG 57.394 41.667 0.00 0.00 0.00 3.66
626 671 5.485620 TGAGTGTCTACGTCTATACTGTGT 58.514 41.667 0.00 0.00 0.00 3.72
627 672 5.936372 TGAGTGTCTACGTCTATACTGTGTT 59.064 40.000 0.00 0.00 0.00 3.32
670 718 2.857483 TGCAGCCTGTTAAACTAGCAA 58.143 42.857 0.00 0.00 0.00 3.91
672 720 2.162408 GCAGCCTGTTAAACTAGCAAGG 59.838 50.000 0.00 0.00 0.00 3.61
676 724 3.863400 GCCTGTTAAACTAGCAAGGTCGA 60.863 47.826 0.00 0.00 0.00 4.20
681 729 2.543777 AACTAGCAAGGTCGAAGCAA 57.456 45.000 0.00 0.00 0.00 3.91
682 730 1.797025 ACTAGCAAGGTCGAAGCAAC 58.203 50.000 0.00 0.00 0.00 4.17
684 732 2.289694 ACTAGCAAGGTCGAAGCAACAT 60.290 45.455 0.00 0.00 0.00 2.71
685 733 0.877071 AGCAAGGTCGAAGCAACATG 59.123 50.000 0.00 0.00 0.00 3.21
687 735 1.522668 CAAGGTCGAAGCAACATGGA 58.477 50.000 0.00 0.00 0.00 3.41
688 736 1.466167 CAAGGTCGAAGCAACATGGAG 59.534 52.381 0.00 0.00 0.00 3.86
689 737 0.674895 AGGTCGAAGCAACATGGAGC 60.675 55.000 0.00 0.00 0.00 4.70
690 738 1.648467 GGTCGAAGCAACATGGAGCC 61.648 60.000 7.88 0.00 0.00 4.70
691 739 0.674895 GTCGAAGCAACATGGAGCCT 60.675 55.000 7.88 0.00 0.00 4.58
692 740 0.036732 TCGAAGCAACATGGAGCCTT 59.963 50.000 7.88 0.00 0.00 4.35
693 741 0.169672 CGAAGCAACATGGAGCCTTG 59.830 55.000 7.88 1.24 0.00 3.61
694 742 1.538047 GAAGCAACATGGAGCCTTGA 58.462 50.000 9.14 0.00 0.00 3.02
695 743 2.097825 GAAGCAACATGGAGCCTTGAT 58.902 47.619 9.14 0.00 0.00 2.57
696 744 1.760192 AGCAACATGGAGCCTTGATC 58.240 50.000 9.14 0.00 0.00 2.92
697 745 1.005097 AGCAACATGGAGCCTTGATCA 59.995 47.619 9.14 0.00 0.00 2.92
698 746 2.029623 GCAACATGGAGCCTTGATCAT 58.970 47.619 9.14 0.00 0.00 2.45
699 747 3.117776 AGCAACATGGAGCCTTGATCATA 60.118 43.478 9.14 0.00 0.00 2.15
700 748 3.633525 GCAACATGGAGCCTTGATCATAA 59.366 43.478 9.14 0.00 0.00 1.90
701 749 4.280174 GCAACATGGAGCCTTGATCATAAT 59.720 41.667 9.14 0.00 0.00 1.28
702 750 5.474532 GCAACATGGAGCCTTGATCATAATA 59.525 40.000 9.14 0.00 0.00 0.98
703 751 6.152323 GCAACATGGAGCCTTGATCATAATAT 59.848 38.462 9.14 0.00 0.00 1.28
704 752 7.337689 GCAACATGGAGCCTTGATCATAATATA 59.662 37.037 9.14 0.00 0.00 0.86
705 753 9.234827 CAACATGGAGCCTTGATCATAATATAA 57.765 33.333 9.14 0.00 0.00 0.98
706 754 9.812347 AACATGGAGCCTTGATCATAATATAAA 57.188 29.630 9.14 0.00 0.00 1.40
707 755 9.458727 ACATGGAGCCTTGATCATAATATAAAG 57.541 33.333 9.14 0.00 0.00 1.85
708 756 9.458727 CATGGAGCCTTGATCATAATATAAAGT 57.541 33.333 0.00 0.00 0.00 2.66
734 782 0.333993 ATGCCTGAATCTGTGGCCTT 59.666 50.000 3.32 0.00 45.56 4.35
751 799 1.134788 CCTTTGCCCGTAAGATCGAGT 60.135 52.381 0.00 0.00 43.02 4.18
752 800 2.194271 CTTTGCCCGTAAGATCGAGTC 58.806 52.381 0.00 0.00 43.02 3.36
753 801 0.458669 TTGCCCGTAAGATCGAGTCC 59.541 55.000 0.00 0.00 43.02 3.85
755 803 0.248949 GCCCGTAAGATCGAGTCCAC 60.249 60.000 0.00 0.00 43.02 4.02
757 805 1.681793 CCCGTAAGATCGAGTCCACAT 59.318 52.381 0.00 0.00 43.02 3.21
758 806 2.100916 CCCGTAAGATCGAGTCCACATT 59.899 50.000 0.00 0.00 43.02 2.71
759 807 3.372954 CCGTAAGATCGAGTCCACATTC 58.627 50.000 0.00 0.00 43.02 2.67
760 808 3.181490 CCGTAAGATCGAGTCCACATTCA 60.181 47.826 0.00 0.00 43.02 2.57
761 809 4.038361 CGTAAGATCGAGTCCACATTCAG 58.962 47.826 0.00 0.00 43.02 3.02
762 810 4.438880 CGTAAGATCGAGTCCACATTCAGT 60.439 45.833 0.00 0.00 43.02 3.41
763 811 5.220796 CGTAAGATCGAGTCCACATTCAGTA 60.221 44.000 0.00 0.00 43.02 2.74
764 812 5.661056 AAGATCGAGTCCACATTCAGTAA 57.339 39.130 0.00 0.00 0.00 2.24
765 813 5.255710 AGATCGAGTCCACATTCAGTAAG 57.744 43.478 0.00 0.00 0.00 2.34
766 814 4.950475 AGATCGAGTCCACATTCAGTAAGA 59.050 41.667 0.00 0.00 0.00 2.10
767 815 4.436242 TCGAGTCCACATTCAGTAAGAC 57.564 45.455 0.00 0.00 34.51 3.01
768 816 3.824443 TCGAGTCCACATTCAGTAAGACA 59.176 43.478 0.00 0.00 35.95 3.41
769 817 4.279922 TCGAGTCCACATTCAGTAAGACAA 59.720 41.667 0.00 0.00 35.95 3.18
770 818 4.386049 CGAGTCCACATTCAGTAAGACAAC 59.614 45.833 0.00 0.00 35.95 3.32
771 819 5.542779 GAGTCCACATTCAGTAAGACAACT 58.457 41.667 0.00 0.00 35.95 3.16
772 820 5.300752 AGTCCACATTCAGTAAGACAACTG 58.699 41.667 0.00 0.00 46.78 3.16
773 821 5.057149 GTCCACATTCAGTAAGACAACTGT 58.943 41.667 4.11 0.00 45.78 3.55
774 822 5.177696 GTCCACATTCAGTAAGACAACTGTC 59.822 44.000 1.40 1.40 45.78 3.51
795 843 1.318576 GGTTGGTTGGTCACTTGAGG 58.681 55.000 0.00 0.00 0.00 3.86
796 844 1.133915 GGTTGGTTGGTCACTTGAGGA 60.134 52.381 0.00 0.00 0.00 3.71
797 845 2.222027 GTTGGTTGGTCACTTGAGGAG 58.778 52.381 0.00 0.00 0.00 3.69
798 846 1.801242 TGGTTGGTCACTTGAGGAGA 58.199 50.000 0.00 0.00 0.00 3.71
799 847 2.338809 TGGTTGGTCACTTGAGGAGAT 58.661 47.619 0.00 0.00 0.00 2.75
823 871 4.139786 GTGTGCATGGGATCAGTTCATAT 58.860 43.478 0.00 0.00 0.00 1.78
824 872 5.308014 GTGTGCATGGGATCAGTTCATATA 58.692 41.667 0.00 0.00 0.00 0.86
826 874 5.163216 TGTGCATGGGATCAGTTCATATACA 60.163 40.000 0.00 0.04 0.00 2.29
827 875 5.180117 GTGCATGGGATCAGTTCATATACAC 59.820 44.000 0.00 0.09 0.00 2.90
828 876 5.072193 TGCATGGGATCAGTTCATATACACT 59.928 40.000 0.00 0.00 0.00 3.55
829 877 6.000219 GCATGGGATCAGTTCATATACACTT 59.000 40.000 0.00 0.00 0.00 3.16
830 878 6.488006 GCATGGGATCAGTTCATATACACTTT 59.512 38.462 0.00 0.00 0.00 2.66
850 898 7.075741 CACTTTATTAGACCGACAAAAACCAG 58.924 38.462 0.00 0.00 0.00 4.00
855 903 0.745128 ACCGACAAAAACCAGACGCA 60.745 50.000 0.00 0.00 0.00 5.24
892 944 1.277273 CTAGCAGCTAGGGCATGCATA 59.723 52.381 21.36 10.74 41.51 3.14
899 951 2.681848 GCTAGGGCATGCATAGCAATAG 59.318 50.000 32.77 19.06 43.62 1.73
900 952 1.542492 AGGGCATGCATAGCAATAGC 58.458 50.000 21.36 8.51 43.62 2.97
904 956 3.181493 GGGCATGCATAGCAATAGCATAC 60.181 47.826 21.36 0.00 46.39 2.39
907 959 4.438336 GCATGCATAGCAATAGCATACCTG 60.438 45.833 14.21 0.00 46.39 4.00
908 960 3.076621 TGCATAGCAATAGCATACCTGC 58.923 45.455 0.00 0.00 45.49 4.85
909 961 3.496515 TGCATAGCAATAGCATACCTGCA 60.497 43.478 0.00 0.00 42.95 4.41
910 962 5.337968 TGCATAGCAATAGCATACCTGCAG 61.338 45.833 6.78 6.78 42.95 4.41
930 982 4.749099 GCAGGCTATATATACATGCAGCTC 59.251 45.833 18.54 5.69 32.58 4.09
968 1020 3.999229 ACATCGATCGAGAAAGCAAAC 57.001 42.857 23.84 0.00 0.00 2.93
1014 1113 2.282180 GACATGGTGCCCAACGGT 60.282 61.111 0.00 0.00 36.95 4.83
1020 1119 0.178987 TGGTGCCCAACGGTAACAAT 60.179 50.000 0.00 0.00 38.70 2.71
1033 1132 3.721798 CGGTAACAATGACAACAACAACG 59.278 43.478 0.00 0.00 0.00 4.10
1843 3406 0.999406 CTTCCGCCACAACTACATCG 59.001 55.000 0.00 0.00 0.00 3.84
1907 3482 5.404946 AGAATCTGCAAAATGTACATGCAC 58.595 37.500 16.65 8.75 44.52 4.57
1926 3501 2.486966 GCTTGCATTCACCGCCTC 59.513 61.111 0.00 0.00 0.00 4.70
1933 3516 0.165944 CATTCACCGCCTCGTGTTTC 59.834 55.000 0.00 0.00 35.18 2.78
1935 3518 0.179067 TTCACCGCCTCGTGTTTCTT 60.179 50.000 0.00 0.00 35.18 2.52
1938 3521 2.073816 CACCGCCTCGTGTTTCTTAAT 58.926 47.619 0.00 0.00 0.00 1.40
1939 3522 2.482721 CACCGCCTCGTGTTTCTTAATT 59.517 45.455 0.00 0.00 0.00 1.40
1969 3552 5.181690 TCTGTAGTTTTGGTCATGCAAAC 57.818 39.130 0.00 0.00 0.00 2.93
1970 3553 3.958704 TGTAGTTTTGGTCATGCAAACG 58.041 40.909 0.00 0.00 35.86 3.60
1972 3555 3.354089 AGTTTTGGTCATGCAAACGAG 57.646 42.857 0.00 0.00 35.86 4.18
2010 3593 6.800892 TGTACGTTTGGTGTTGTAAGTTTTTC 59.199 34.615 0.00 0.00 0.00 2.29
2015 3601 7.327518 CGTTTGGTGTTGTAAGTTTTTCTCTTT 59.672 33.333 0.00 0.00 0.00 2.52
2043 3629 7.766738 CAGGGTTTAATTTGGTGTTGTAAGTTT 59.233 33.333 0.00 0.00 0.00 2.66
2087 4542 4.097741 ACATGTATGTTGTGCTGTGTGTTT 59.902 37.500 0.00 0.00 37.90 2.83
2088 4543 4.285807 TGTATGTTGTGCTGTGTGTTTC 57.714 40.909 0.00 0.00 0.00 2.78
2090 4545 0.449786 TGTTGTGCTGTGTGTTTCGG 59.550 50.000 0.00 0.00 0.00 4.30
2103 4558 5.821470 TGTGTGTTTCGGGTTTAGTTAATCA 59.179 36.000 0.00 0.00 0.00 2.57
2112 4567 7.495055 TCGGGTTTAGTTAATCATCTTCCTAC 58.505 38.462 0.00 0.00 0.00 3.18
2121 4579 9.331282 AGTTAATCATCTTCCTACTAAATGCAC 57.669 33.333 0.00 0.00 0.00 4.57
2130 4588 5.116180 TCCTACTAAATGCACGAGAATTGG 58.884 41.667 0.00 0.00 0.00 3.16
2143 4601 5.779806 CGAGAATTGGTCGTTAATTCACT 57.220 39.130 17.35 4.86 43.56 3.41
2144 4602 5.550981 CGAGAATTGGTCGTTAATTCACTG 58.449 41.667 17.35 8.04 43.56 3.66
2145 4603 5.120208 CGAGAATTGGTCGTTAATTCACTGT 59.880 40.000 17.35 4.13 43.56 3.55
2146 4604 6.481954 AGAATTGGTCGTTAATTCACTGTC 57.518 37.500 17.35 0.00 43.56 3.51
2150 4608 4.304110 TGGTCGTTAATTCACTGTCACTC 58.696 43.478 0.00 0.00 0.00 3.51
2151 4609 4.202172 TGGTCGTTAATTCACTGTCACTCA 60.202 41.667 0.00 0.00 0.00 3.41
2152 4610 4.929808 GGTCGTTAATTCACTGTCACTCAT 59.070 41.667 0.00 0.00 0.00 2.90
2153 4611 5.408604 GGTCGTTAATTCACTGTCACTCATT 59.591 40.000 0.00 0.00 0.00 2.57
2155 4613 6.145534 GTCGTTAATTCACTGTCACTCATTCA 59.854 38.462 0.00 0.00 0.00 2.57
2165 4623 4.825422 TGTCACTCATTCATCACCTTCTC 58.175 43.478 0.00 0.00 0.00 2.87
2176 4634 1.980765 TCACCTTCTCTTGAGCACCAT 59.019 47.619 0.00 0.00 0.00 3.55
2178 4636 3.055819 TCACCTTCTCTTGAGCACCATAC 60.056 47.826 0.00 0.00 0.00 2.39
2187 4645 4.887071 TCTTGAGCACCATACAAACTTGTT 59.113 37.500 0.00 0.00 42.35 2.83
2190 5446 4.642437 TGAGCACCATACAAACTTGTTTGA 59.358 37.500 26.61 14.07 40.91 2.69
2191 5447 5.126222 TGAGCACCATACAAACTTGTTTGAA 59.874 36.000 26.61 0.00 40.91 2.69
2196 5452 7.850492 GCACCATACAAACTTGTTTGAAATTTC 59.150 33.333 26.61 11.41 40.91 2.17
2198 5454 9.665719 ACCATACAAACTTGTTTGAAATTTCTT 57.334 25.926 26.61 9.24 40.91 2.52
2206 5462 9.487790 AACTTGTTTGAAATTTCTTGAAACTGA 57.512 25.926 22.76 15.08 0.00 3.41
2217 5473 9.657419 AATTTCTTGAAACTGATTCTTTTGTGT 57.343 25.926 0.00 0.00 38.92 3.72
2218 5474 8.464770 TTTCTTGAAACTGATTCTTTTGTGTG 57.535 30.769 0.00 0.00 38.92 3.82
2221 5485 8.303156 TCTTGAAACTGATTCTTTTGTGTGAAA 58.697 29.630 0.00 0.00 38.92 2.69
2223 6248 8.824159 TGAAACTGATTCTTTTGTGTGAAAAA 57.176 26.923 0.00 0.00 38.92 1.94
2242 6267 4.450082 AAAAACCGGATCTATTGTTGCC 57.550 40.909 9.46 0.00 0.00 4.52
2245 6270 1.494721 ACCGGATCTATTGTTGCCCAT 59.505 47.619 9.46 0.00 0.00 4.00
2258 6283 3.136123 CCCATGGTTGCAGCTCCG 61.136 66.667 11.73 0.00 0.00 4.63
2259 6284 2.360350 CCATGGTTGCAGCTCCGT 60.360 61.111 2.57 0.00 0.00 4.69
2276 6301 2.036098 TGGTTCGCGGGTCCTAGA 59.964 61.111 6.13 0.00 0.00 2.43
2312 6338 1.376683 GCACCATGCTTACCGGTCA 60.377 57.895 12.40 2.79 40.96 4.02
2316 6342 1.834896 ACCATGCTTACCGGTCACATA 59.165 47.619 12.40 0.00 0.00 2.29
2317 6343 2.438021 ACCATGCTTACCGGTCACATAT 59.562 45.455 12.40 2.56 0.00 1.78
2319 6345 3.244215 CCATGCTTACCGGTCACATATCT 60.244 47.826 12.40 0.00 0.00 1.98
2320 6346 4.021456 CCATGCTTACCGGTCACATATCTA 60.021 45.833 12.40 0.00 0.00 1.98
2321 6347 4.579454 TGCTTACCGGTCACATATCTAC 57.421 45.455 12.40 0.00 0.00 2.59
2329 6355 2.561922 GTCACATATCTACGCTCGTCG 58.438 52.381 0.00 0.00 45.38 5.12
2340 6366 0.295763 CGCTCGTCGTCATTGTCATG 59.704 55.000 0.00 0.00 0.00 3.07
2348 6374 0.179156 GTCATTGTCATGGGCGCTTG 60.179 55.000 7.64 10.06 0.00 4.01
2354 6380 4.492160 CATGGGCGCTTGCAGCAG 62.492 66.667 7.64 0.00 42.58 4.24
2387 6413 3.426568 GCAGCTCCAGCCGTCAAC 61.427 66.667 0.00 0.00 43.38 3.18
2402 6428 2.477189 CGTCAACGGTTGCAATATTCCC 60.477 50.000 15.89 0.00 35.37 3.97
2406 6432 2.031120 ACGGTTGCAATATTCCCCATG 58.969 47.619 0.59 0.00 0.00 3.66
2413 6439 2.424812 GCAATATTCCCCATGGTGAGGT 60.425 50.000 11.73 0.16 0.00 3.85
2414 6440 3.181434 GCAATATTCCCCATGGTGAGGTA 60.181 47.826 11.73 2.56 0.00 3.08
2415 6441 4.655963 CAATATTCCCCATGGTGAGGTAG 58.344 47.826 11.73 0.00 0.00 3.18
2416 6442 1.522900 ATTCCCCATGGTGAGGTAGG 58.477 55.000 11.73 2.53 0.00 3.18
2417 6443 0.623324 TTCCCCATGGTGAGGTAGGG 60.623 60.000 11.73 1.72 39.29 3.53
2418 6444 1.307866 CCCCATGGTGAGGTAGGGT 60.308 63.158 11.73 0.00 37.84 4.34
2419 6445 1.635817 CCCCATGGTGAGGTAGGGTG 61.636 65.000 11.73 0.00 37.84 4.61
2420 6446 1.224592 CCATGGTGAGGTAGGGTGC 59.775 63.158 2.57 0.00 0.00 5.01
2435 6461 1.590525 GTGCGTTGTGTCACGAGGA 60.591 57.895 15.63 0.27 43.15 3.71
2439 6465 1.497991 CGTTGTGTCACGAGGATTGT 58.502 50.000 7.05 0.00 43.15 2.71
2442 6468 2.363788 TGTGTCACGAGGATTGTAGC 57.636 50.000 0.00 0.00 0.00 3.58
2443 6469 1.893137 TGTGTCACGAGGATTGTAGCT 59.107 47.619 0.00 0.00 0.00 3.32
2445 6471 1.476891 TGTCACGAGGATTGTAGCTCC 59.523 52.381 0.00 0.00 0.00 4.70
2446 6472 1.112113 TCACGAGGATTGTAGCTCCC 58.888 55.000 0.00 0.00 32.89 4.30
2447 6473 1.115467 CACGAGGATTGTAGCTCCCT 58.885 55.000 0.00 0.00 32.89 4.20
2449 6475 1.342076 ACGAGGATTGTAGCTCCCTGA 60.342 52.381 0.00 0.00 32.89 3.86
2451 6477 2.393646 GAGGATTGTAGCTCCCTGACT 58.606 52.381 0.00 0.00 32.89 3.41
2452 6478 2.364002 GAGGATTGTAGCTCCCTGACTC 59.636 54.545 0.00 0.00 32.89 3.36
2455 6481 2.145397 TTGTAGCTCCCTGACTCGAT 57.855 50.000 0.00 0.00 0.00 3.59
2456 6482 1.393603 TGTAGCTCCCTGACTCGATG 58.606 55.000 0.00 0.00 0.00 3.84
2468 6499 0.824759 ACTCGATGGTTGTAGCTCCC 59.175 55.000 0.00 0.00 0.00 4.30
2470 6501 1.067821 CTCGATGGTTGTAGCTCCCTC 59.932 57.143 0.00 0.00 0.00 4.30
2490 6521 2.535331 GGTGGTGGTTGTAGCCCCT 61.535 63.158 0.00 0.00 0.00 4.79
2546 6577 1.079127 CTACCTCACCGGTTGCCAG 60.079 63.158 2.97 0.00 46.37 4.85
2547 6578 3.248446 TACCTCACCGGTTGCCAGC 62.248 63.158 2.97 0.00 46.37 4.85
2570 6601 3.605664 GGGTGTGGGTTGCAGCAC 61.606 66.667 2.05 0.00 36.21 4.40
2571 6602 2.519302 GGTGTGGGTTGCAGCACT 60.519 61.111 3.88 0.00 34.80 4.40
2572 6603 2.723746 GTGTGGGTTGCAGCACTG 59.276 61.111 3.88 0.00 0.00 3.66
2591 6622 2.988684 GTTGCCGGCCATGGACAA 60.989 61.111 26.77 11.78 0.00 3.18
2592 6623 2.988684 TTGCCGGCCATGGACAAC 60.989 61.111 26.77 9.39 0.00 3.32
2593 6624 3.799286 TTGCCGGCCATGGACAACA 62.799 57.895 26.77 12.36 0.00 3.33
2594 6625 2.755469 GCCGGCCATGGACAACAT 60.755 61.111 20.22 0.00 41.57 2.71
2595 6626 2.774799 GCCGGCCATGGACAACATC 61.775 63.158 20.22 0.00 37.84 3.06
2596 6627 1.378382 CCGGCCATGGACAACATCA 60.378 57.895 20.22 0.00 37.84 3.07
2597 6628 1.378882 CCGGCCATGGACAACATCAG 61.379 60.000 20.22 0.00 37.84 2.90
2598 6629 0.677731 CGGCCATGGACAACATCAGT 60.678 55.000 20.22 0.00 37.84 3.41
2599 6630 1.098050 GGCCATGGACAACATCAGTC 58.902 55.000 18.40 0.00 37.84 3.51
2600 6631 1.340405 GGCCATGGACAACATCAGTCT 60.340 52.381 18.40 0.00 37.84 3.24
2601 6632 2.440409 GCCATGGACAACATCAGTCTT 58.560 47.619 18.40 0.00 37.84 3.01
2602 6633 2.163010 GCCATGGACAACATCAGTCTTG 59.837 50.000 18.40 0.00 37.84 3.02
2603 6634 3.678289 CCATGGACAACATCAGTCTTGA 58.322 45.455 5.56 0.00 37.84 3.02
2604 6635 3.438087 CCATGGACAACATCAGTCTTGAC 59.562 47.826 5.56 0.00 37.84 3.18
2605 6636 3.836365 TGGACAACATCAGTCTTGACA 57.164 42.857 3.49 0.00 35.83 3.58
2606 6637 3.466836 TGGACAACATCAGTCTTGACAC 58.533 45.455 3.49 0.00 35.83 3.67
2607 6638 2.808543 GGACAACATCAGTCTTGACACC 59.191 50.000 3.49 0.00 35.83 4.16
2608 6639 2.476619 GACAACATCAGTCTTGACACCG 59.523 50.000 3.49 0.00 35.83 4.94
2609 6640 1.195448 CAACATCAGTCTTGACACCGC 59.805 52.381 3.49 0.00 35.83 5.68
2610 6641 0.320771 ACATCAGTCTTGACACCGCC 60.321 55.000 3.49 0.00 35.83 6.13
2611 6642 1.079819 ATCAGTCTTGACACCGCCG 60.080 57.895 3.49 0.00 35.83 6.46
2612 6643 1.532604 ATCAGTCTTGACACCGCCGA 61.533 55.000 3.49 0.00 35.83 5.54
2613 6644 2.022129 CAGTCTTGACACCGCCGAC 61.022 63.158 3.49 0.00 0.00 4.79
2614 6645 3.103911 GTCTTGACACCGCCGACG 61.104 66.667 0.00 0.00 39.67 5.12
2615 6646 3.289062 TCTTGACACCGCCGACGA 61.289 61.111 0.00 0.00 43.93 4.20
2616 6647 3.103911 CTTGACACCGCCGACGAC 61.104 66.667 0.00 0.00 43.93 4.34
2617 6648 4.651008 TTGACACCGCCGACGACC 62.651 66.667 0.00 0.00 43.93 4.79
2632 6663 2.747686 ACCATCGCCGGTCAAAGT 59.252 55.556 1.90 0.00 32.11 2.66
2645 6676 3.492656 CGGTCAAAGTTGTGAGAAGGAGA 60.493 47.826 0.00 0.00 0.00 3.71
2648 6679 5.360591 GTCAAAGTTGTGAGAAGGAGAAGA 58.639 41.667 0.00 0.00 0.00 2.87
2649 6680 5.817816 GTCAAAGTTGTGAGAAGGAGAAGAA 59.182 40.000 0.00 0.00 0.00 2.52
2650 6681 6.018343 GTCAAAGTTGTGAGAAGGAGAAGAAG 60.018 42.308 0.00 0.00 0.00 2.85
2652 6683 2.732412 TGTGAGAAGGAGAAGAAGCG 57.268 50.000 0.00 0.00 0.00 4.68
2653 6684 1.337260 TGTGAGAAGGAGAAGAAGCGC 60.337 52.381 0.00 0.00 0.00 5.92
2686 6717 3.437795 GCTTGCAGCAGCCATCGT 61.438 61.111 0.00 0.00 41.89 3.73
2687 6718 2.789917 CTTGCAGCAGCCATCGTC 59.210 61.111 0.00 0.00 41.13 4.20
2688 6719 2.032376 TTGCAGCAGCCATCGTCA 59.968 55.556 0.00 0.00 41.13 4.35
2689 6720 1.374343 CTTGCAGCAGCCATCGTCAT 61.374 55.000 0.00 0.00 41.13 3.06
2690 6721 1.371337 TTGCAGCAGCCATCGTCATC 61.371 55.000 0.00 0.00 41.13 2.92
2692 6723 1.153309 CAGCAGCCATCGTCATCCA 60.153 57.895 0.00 0.00 0.00 3.41
2693 6724 1.153289 AGCAGCCATCGTCATCCAC 60.153 57.895 0.00 0.00 0.00 4.02
2694 6725 1.153289 GCAGCCATCGTCATCCACT 60.153 57.895 0.00 0.00 0.00 4.00
2695 6726 1.434622 GCAGCCATCGTCATCCACTG 61.435 60.000 0.00 0.00 0.00 3.66
2721 6960 9.444600 GTAGGGTTTACAATGAGTCAAGATAAA 57.555 33.333 0.00 0.00 0.00 1.40
2723 6962 8.383175 AGGGTTTACAATGAGTCAAGATAAAGA 58.617 33.333 0.00 0.00 0.00 2.52
2736 6975 2.158755 AGATAAAGAATGGAGGCGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
2794 7033 1.594833 CGGTTGGATCCTTGGACGA 59.405 57.895 14.23 0.00 0.00 4.20
2801 7040 4.782019 TGGATCCTTGGACGAAATTTTG 57.218 40.909 14.23 3.73 0.00 2.44
2802 7041 3.056891 TGGATCCTTGGACGAAATTTTGC 60.057 43.478 14.23 0.00 0.00 3.68
2803 7042 3.511699 GATCCTTGGACGAAATTTTGCC 58.488 45.455 5.27 8.33 0.00 4.52
2804 7043 2.311463 TCCTTGGACGAAATTTTGCCA 58.689 42.857 14.17 14.17 0.00 4.92
2805 7044 2.896685 TCCTTGGACGAAATTTTGCCAT 59.103 40.909 17.19 0.00 0.00 4.40
2806 7045 3.323403 TCCTTGGACGAAATTTTGCCATT 59.677 39.130 17.19 0.00 0.00 3.16
2807 7046 3.432933 CCTTGGACGAAATTTTGCCATTG 59.567 43.478 17.19 13.85 0.00 2.82
2808 7047 4.305769 CTTGGACGAAATTTTGCCATTGA 58.694 39.130 17.19 6.87 0.00 2.57
2809 7048 3.648009 TGGACGAAATTTTGCCATTGAC 58.352 40.909 14.17 0.00 0.00 3.18
2810 7049 3.068732 TGGACGAAATTTTGCCATTGACA 59.931 39.130 14.17 0.00 0.00 3.58
2811 7050 4.054671 GGACGAAATTTTGCCATTGACAA 58.945 39.130 5.27 0.00 0.00 3.18
2812 7051 4.690280 GGACGAAATTTTGCCATTGACAAT 59.310 37.500 5.27 0.00 0.00 2.71
2813 7052 5.163963 GGACGAAATTTTGCCATTGACAATC 60.164 40.000 5.27 0.00 0.00 2.67
2814 7053 5.295950 ACGAAATTTTGCCATTGACAATCA 58.704 33.333 5.27 0.00 0.00 2.57
2815 7054 5.406175 ACGAAATTTTGCCATTGACAATCAG 59.594 36.000 5.27 0.00 0.00 2.90
2816 7055 5.616488 AAATTTTGCCATTGACAATCAGC 57.384 34.783 11.25 11.25 0.00 4.26
2817 7056 4.546829 ATTTTGCCATTGACAATCAGCT 57.453 36.364 16.70 0.00 0.00 4.24
2818 7057 3.581024 TTTGCCATTGACAATCAGCTC 57.419 42.857 16.70 0.18 0.00 4.09
2819 7058 1.089112 TGCCATTGACAATCAGCTCG 58.911 50.000 16.70 0.00 0.00 5.03
2820 7059 1.089920 GCCATTGACAATCAGCTCGT 58.910 50.000 10.99 0.00 0.00 4.18
2821 7060 1.202110 GCCATTGACAATCAGCTCGTG 60.202 52.381 10.99 0.00 0.00 4.35
2822 7061 2.079158 CCATTGACAATCAGCTCGTGT 58.921 47.619 0.00 0.00 0.00 4.49
2823 7062 2.094894 CCATTGACAATCAGCTCGTGTC 59.905 50.000 12.11 12.11 41.66 3.67
2824 7063 2.820059 TTGACAATCAGCTCGTGTCT 57.180 45.000 17.42 0.00 41.80 3.41
2825 7064 2.820059 TGACAATCAGCTCGTGTCTT 57.180 45.000 17.42 0.00 41.80 3.01
2826 7065 3.111853 TGACAATCAGCTCGTGTCTTT 57.888 42.857 17.42 0.00 41.80 2.52
2827 7066 2.802247 TGACAATCAGCTCGTGTCTTTG 59.198 45.455 17.42 3.48 41.80 2.77
2828 7067 1.532868 ACAATCAGCTCGTGTCTTTGC 59.467 47.619 0.00 0.00 0.00 3.68
2829 7068 1.532437 CAATCAGCTCGTGTCTTTGCA 59.468 47.619 0.00 0.00 0.00 4.08
2830 7069 1.436600 ATCAGCTCGTGTCTTTGCAG 58.563 50.000 0.00 0.00 0.00 4.41
2831 7070 0.601046 TCAGCTCGTGTCTTTGCAGG 60.601 55.000 0.00 0.00 0.00 4.85
2832 7071 0.882042 CAGCTCGTGTCTTTGCAGGT 60.882 55.000 0.00 0.00 0.00 4.00
2833 7072 0.882042 AGCTCGTGTCTTTGCAGGTG 60.882 55.000 0.00 0.00 0.00 4.00
2834 7073 1.160329 GCTCGTGTCTTTGCAGGTGT 61.160 55.000 0.00 0.00 0.00 4.16
2835 7074 0.861837 CTCGTGTCTTTGCAGGTGTC 59.138 55.000 0.00 0.00 0.00 3.67
2836 7075 0.464036 TCGTGTCTTTGCAGGTGTCT 59.536 50.000 0.00 0.00 0.00 3.41
2837 7076 0.583438 CGTGTCTTTGCAGGTGTCTG 59.417 55.000 0.00 0.00 43.64 3.51
2838 7077 0.947244 GTGTCTTTGCAGGTGTCTGG 59.053 55.000 0.00 0.00 41.19 3.86
2839 7078 0.546122 TGTCTTTGCAGGTGTCTGGT 59.454 50.000 0.00 0.00 41.19 4.00
2840 7079 1.064758 TGTCTTTGCAGGTGTCTGGTT 60.065 47.619 0.00 0.00 41.19 3.67
2841 7080 2.024414 GTCTTTGCAGGTGTCTGGTTT 58.976 47.619 0.00 0.00 41.19 3.27
2842 7081 2.023673 TCTTTGCAGGTGTCTGGTTTG 58.976 47.619 0.00 0.00 41.19 2.93
2843 7082 2.023673 CTTTGCAGGTGTCTGGTTTGA 58.976 47.619 0.00 0.00 41.19 2.69
2844 7083 1.388547 TTGCAGGTGTCTGGTTTGAC 58.611 50.000 0.00 0.00 41.19 3.18
2845 7084 0.254462 TGCAGGTGTCTGGTTTGACA 59.746 50.000 0.00 0.00 43.72 3.58
2846 7085 1.340502 TGCAGGTGTCTGGTTTGACAA 60.341 47.619 0.00 0.00 46.77 3.18
2852 7091 4.474226 GTGTCTGGTTTGACAACAGATC 57.526 45.455 10.65 6.61 46.77 2.75
2853 7092 3.251004 GTGTCTGGTTTGACAACAGATCC 59.749 47.826 10.65 2.14 46.77 3.36
2854 7093 3.136443 TGTCTGGTTTGACAACAGATCCT 59.864 43.478 10.65 0.00 43.08 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.655532 ACCAATTTTCTCTGCTGCTATCATT 59.344 36.000 0.00 0.00 0.00 2.57
54 55 8.792633 TGTCACCTATTTAACCAATTTTCTCTG 58.207 33.333 0.00 0.00 0.00 3.35
77 78 9.398170 GAACACCAACATATTGCATATATTGTC 57.602 33.333 0.00 0.00 29.76 3.18
81 82 6.349280 GCGGAACACCAACATATTGCATATAT 60.349 38.462 0.00 0.00 34.17 0.86
120 121 3.569194 TGAGGCTTCAACACTGGTTTA 57.431 42.857 0.00 0.00 34.21 2.01
147 150 1.553690 ATATAGCGGCCGGGCTCATT 61.554 55.000 29.38 11.96 43.54 2.57
157 160 1.269621 ACAGGACGTTGATATAGCGGC 60.270 52.381 0.00 0.00 40.73 6.53
158 161 2.607282 GGACAGGACGTTGATATAGCGG 60.607 54.545 0.00 0.00 37.32 5.52
159 162 2.034179 TGGACAGGACGTTGATATAGCG 59.966 50.000 0.00 0.00 39.09 4.26
160 163 3.728076 TGGACAGGACGTTGATATAGC 57.272 47.619 0.00 0.00 0.00 2.97
161 164 4.809426 GGTTTGGACAGGACGTTGATATAG 59.191 45.833 0.00 0.00 0.00 1.31
163 166 3.606687 GGTTTGGACAGGACGTTGATAT 58.393 45.455 0.00 0.00 0.00 1.63
164 167 2.289819 GGGTTTGGACAGGACGTTGATA 60.290 50.000 0.00 0.00 0.00 2.15
165 168 1.544759 GGGTTTGGACAGGACGTTGAT 60.545 52.381 0.00 0.00 0.00 2.57
166 169 0.179040 GGGTTTGGACAGGACGTTGA 60.179 55.000 0.00 0.00 0.00 3.18
167 170 0.464735 TGGGTTTGGACAGGACGTTG 60.465 55.000 0.00 0.00 0.00 4.10
190 193 8.391106 CCTTTTATGAACATGTGCTTACTCTAC 58.609 37.037 5.18 0.00 0.00 2.59
206 209 6.269769 ACAAAGAATCCAAGGCCTTTTATGAA 59.730 34.615 17.61 0.00 0.00 2.57
212 215 2.899900 GGACAAAGAATCCAAGGCCTTT 59.100 45.455 17.61 0.00 36.15 3.11
213 216 2.110721 AGGACAAAGAATCCAAGGCCTT 59.889 45.455 13.78 13.78 38.86 4.35
214 217 1.713078 AGGACAAAGAATCCAAGGCCT 59.287 47.619 0.00 0.00 38.86 5.19
215 218 2.222227 AGGACAAAGAATCCAAGGCC 57.778 50.000 0.00 0.00 38.86 5.19
216 219 5.010617 TGTTTTAGGACAAAGAATCCAAGGC 59.989 40.000 0.00 0.00 38.86 4.35
217 220 6.648879 TGTTTTAGGACAAAGAATCCAAGG 57.351 37.500 0.00 0.00 38.86 3.61
218 221 9.626045 GTAATGTTTTAGGACAAAGAATCCAAG 57.374 33.333 0.00 0.00 38.86 3.61
219 222 9.137459 TGTAATGTTTTAGGACAAAGAATCCAA 57.863 29.630 0.00 0.00 38.86 3.53
220 223 8.698973 TGTAATGTTTTAGGACAAAGAATCCA 57.301 30.769 0.00 0.00 38.86 3.41
243 246 5.184892 AGAACCAAGAAGAATGGCTATGT 57.815 39.130 0.00 0.00 41.89 2.29
244 247 5.220739 CGAAGAACCAAGAAGAATGGCTATG 60.221 44.000 0.00 0.00 41.89 2.23
252 255 3.553828 ACCACGAAGAACCAAGAAGAA 57.446 42.857 0.00 0.00 0.00 2.52
257 281 1.269051 GCCAAACCACGAAGAACCAAG 60.269 52.381 0.00 0.00 0.00 3.61
267 291 1.884235 AGAAGAAGAGCCAAACCACG 58.116 50.000 0.00 0.00 0.00 4.94
271 295 4.929808 TCAATCGTAGAAGAAGAGCCAAAC 59.070 41.667 0.00 0.00 43.58 2.93
305 329 6.921486 TGTTGGGTTTAGTCTCATACTACA 57.079 37.500 0.00 0.00 40.48 2.74
306 330 8.788325 ATTTGTTGGGTTTAGTCTCATACTAC 57.212 34.615 0.00 0.00 40.48 2.73
307 331 9.802039 AAATTTGTTGGGTTTAGTCTCATACTA 57.198 29.630 0.00 0.00 39.80 1.82
309 333 9.191995 CAAAATTTGTTGGGTTTAGTCTCATAC 57.808 33.333 0.00 0.00 0.00 2.39
310 334 8.919145 ACAAAATTTGTTGGGTTTAGTCTCATA 58.081 29.630 5.41 0.00 42.22 2.15
311 335 7.791029 ACAAAATTTGTTGGGTTTAGTCTCAT 58.209 30.769 5.41 0.00 42.22 2.90
312 336 7.176589 ACAAAATTTGTTGGGTTTAGTCTCA 57.823 32.000 5.41 0.00 42.22 3.27
335 374 0.951558 ACAAACCGACATGCAAGGAC 59.048 50.000 8.46 0.00 0.00 3.85
374 417 7.412672 GCCAAGAACTTTCGATCGTAGTTTAAT 60.413 37.037 26.74 18.13 32.58 1.40
383 426 1.128692 GGTGCCAAGAACTTTCGATCG 59.871 52.381 9.36 9.36 0.00 3.69
403 446 2.642139 ATCCAGAAAATTGCGCACAG 57.358 45.000 11.12 0.00 0.00 3.66
417 462 4.792068 TGGTAGGCCTGAAATAAATCCAG 58.208 43.478 17.99 0.00 35.27 3.86
437 482 1.591594 ACAGAACGCACGTCACTGG 60.592 57.895 23.54 12.58 37.04 4.00
439 484 1.591594 CCACAGAACGCACGTCACT 60.592 57.895 0.00 0.00 0.00 3.41
458 503 2.015587 AGTCGACGGGAATGTCTACTC 58.984 52.381 10.46 0.00 39.81 2.59
472 517 2.092211 CACAAATGCCTTCGTAGTCGAC 59.908 50.000 7.70 7.70 46.03 4.20
475 520 3.932710 TCATCACAAATGCCTTCGTAGTC 59.067 43.478 0.00 0.00 0.00 2.59
477 522 3.935203 AGTCATCACAAATGCCTTCGTAG 59.065 43.478 0.00 0.00 0.00 3.51
480 525 3.189080 TGAAGTCATCACAAATGCCTTCG 59.811 43.478 4.86 0.00 31.50 3.79
501 546 4.319549 CGGCACATCATCTTGAGATTGATG 60.320 45.833 19.97 19.97 41.02 3.07
502 547 3.813724 CGGCACATCATCTTGAGATTGAT 59.186 43.478 0.90 1.64 31.21 2.57
513 558 1.202580 AGACTAAGCCGGCACATCATC 60.203 52.381 31.54 17.48 0.00 2.92
528 573 2.163509 ACGAGCAGCTCTTGAAGACTA 58.836 47.619 20.39 0.00 0.00 2.59
531 576 1.474478 CCTACGAGCAGCTCTTGAAGA 59.526 52.381 20.39 0.00 0.00 2.87
532 577 1.470632 CCCTACGAGCAGCTCTTGAAG 60.471 57.143 20.39 11.09 0.00 3.02
533 578 0.532573 CCCTACGAGCAGCTCTTGAA 59.467 55.000 20.39 2.16 0.00 2.69
534 579 0.323451 TCCCTACGAGCAGCTCTTGA 60.323 55.000 20.39 6.50 0.00 3.02
535 580 0.749649 ATCCCTACGAGCAGCTCTTG 59.250 55.000 20.39 8.25 0.00 3.02
536 581 2.235016 CTATCCCTACGAGCAGCTCTT 58.765 52.381 20.39 13.73 0.00 2.85
537 582 1.904287 CTATCCCTACGAGCAGCTCT 58.096 55.000 20.39 9.84 0.00 4.09
538 583 0.242555 GCTATCCCTACGAGCAGCTC 59.757 60.000 12.94 12.94 36.20 4.09
547 592 1.598924 GCACGTACACGCTATCCCTAC 60.599 57.143 0.85 0.00 44.43 3.18
549 594 1.436336 GCACGTACACGCTATCCCT 59.564 57.895 0.85 0.00 44.43 4.20
553 598 2.156446 GCACGCACGTACACGCTAT 61.156 57.895 0.85 0.00 44.43 2.97
554 599 2.801996 GCACGCACGTACACGCTA 60.802 61.111 0.85 0.00 44.43 4.26
563 608 2.695055 CCTATGAACGCACGCACG 59.305 61.111 0.00 0.00 39.50 5.34
564 609 2.461110 CCCCTATGAACGCACGCAC 61.461 63.158 0.00 0.00 0.00 5.34
566 611 2.125269 ACCCCTATGAACGCACGC 60.125 61.111 0.00 0.00 0.00 5.34
567 612 0.806102 CTCACCCCTATGAACGCACG 60.806 60.000 0.00 0.00 0.00 5.34
568 613 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
569 614 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
570 615 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
571 616 1.275291 ACACACTCACCCCTATGAACG 59.725 52.381 0.00 0.00 0.00 3.95
572 617 2.038557 ACACACACTCACCCCTATGAAC 59.961 50.000 0.00 0.00 0.00 3.18
573 618 2.038426 CACACACACTCACCCCTATGAA 59.962 50.000 0.00 0.00 0.00 2.57
574 619 1.623311 CACACACACTCACCCCTATGA 59.377 52.381 0.00 0.00 0.00 2.15
575 620 1.945819 GCACACACACTCACCCCTATG 60.946 57.143 0.00 0.00 0.00 2.23
576 621 0.324943 GCACACACACTCACCCCTAT 59.675 55.000 0.00 0.00 0.00 2.57
577 622 1.752198 GCACACACACTCACCCCTA 59.248 57.895 0.00 0.00 0.00 3.53
578 623 2.510906 GCACACACACTCACCCCT 59.489 61.111 0.00 0.00 0.00 4.79
579 624 1.764571 TAGGCACACACACTCACCCC 61.765 60.000 0.00 0.00 0.00 4.95
580 625 0.324943 ATAGGCACACACACTCACCC 59.675 55.000 0.00 0.00 0.00 4.61
581 626 1.270839 ACATAGGCACACACACTCACC 60.271 52.381 0.00 0.00 0.00 4.02
582 627 2.169832 ACATAGGCACACACACTCAC 57.830 50.000 0.00 0.00 0.00 3.51
590 635 4.392921 AGACACTCATACATAGGCACAC 57.607 45.455 0.00 0.00 0.00 3.82
591 636 4.036380 CGTAGACACTCATACATAGGCACA 59.964 45.833 0.00 0.00 0.00 4.57
593 638 4.204799 ACGTAGACACTCATACATAGGCA 58.795 43.478 0.00 0.00 0.00 4.75
596 641 9.642327 AGTATAGACGTAGACACTCATACATAG 57.358 37.037 0.00 0.00 0.00 2.23
651 699 2.162408 CCTTGCTAGTTTAACAGGCTGC 59.838 50.000 15.89 0.00 0.00 5.25
652 700 3.412386 ACCTTGCTAGTTTAACAGGCTG 58.588 45.455 14.16 14.16 0.00 4.85
670 718 0.674895 GCTCCATGTTGCTTCGACCT 60.675 55.000 0.00 0.00 0.00 3.85
672 720 0.674895 AGGCTCCATGTTGCTTCGAC 60.675 55.000 7.04 0.00 0.00 4.20
676 724 2.097825 GATCAAGGCTCCATGTTGCTT 58.902 47.619 7.04 0.00 0.00 3.91
681 729 9.458727 CTTTATATTATGATCAAGGCTCCATGT 57.541 33.333 0.00 0.00 0.00 3.21
682 730 9.458727 ACTTTATATTATGATCAAGGCTCCATG 57.541 33.333 0.00 0.00 0.00 3.66
702 750 8.709308 ACAGATTCAGGCATCTACTAACTTTAT 58.291 33.333 0.00 0.00 31.86 1.40
703 751 7.981789 CACAGATTCAGGCATCTACTAACTTTA 59.018 37.037 0.00 0.00 31.86 1.85
704 752 6.820656 CACAGATTCAGGCATCTACTAACTTT 59.179 38.462 0.00 0.00 31.86 2.66
705 753 6.344500 CACAGATTCAGGCATCTACTAACTT 58.656 40.000 0.00 0.00 31.86 2.66
706 754 5.163364 CCACAGATTCAGGCATCTACTAACT 60.163 44.000 0.00 0.00 31.86 2.24
707 755 5.053145 CCACAGATTCAGGCATCTACTAAC 58.947 45.833 0.00 0.00 31.86 2.34
708 756 5.282055 CCACAGATTCAGGCATCTACTAA 57.718 43.478 0.00 0.00 31.86 2.24
709 757 4.944619 CCACAGATTCAGGCATCTACTA 57.055 45.455 0.00 0.00 31.86 1.82
710 758 3.834489 CCACAGATTCAGGCATCTACT 57.166 47.619 0.00 0.00 31.86 2.57
734 782 0.458669 GGACTCGATCTTACGGGCAA 59.541 55.000 0.00 0.00 37.25 4.52
747 795 4.174411 TGTCTTACTGAATGTGGACTCG 57.826 45.455 0.00 0.00 35.43 4.18
751 799 5.290493 ACAGTTGTCTTACTGAATGTGGA 57.710 39.130 10.46 0.00 46.72 4.02
752 800 5.597813 GACAGTTGTCTTACTGAATGTGG 57.402 43.478 10.46 0.00 46.72 4.17
765 813 1.676006 CCAACCAACCAGACAGTTGTC 59.324 52.381 4.09 4.09 44.60 3.18
766 814 1.005450 ACCAACCAACCAGACAGTTGT 59.995 47.619 3.95 0.00 44.60 3.32
767 815 1.676006 GACCAACCAACCAGACAGTTG 59.324 52.381 0.00 0.00 45.46 3.16
768 816 1.283613 TGACCAACCAACCAGACAGTT 59.716 47.619 0.00 0.00 0.00 3.16
769 817 0.916086 TGACCAACCAACCAGACAGT 59.084 50.000 0.00 0.00 0.00 3.55
770 818 1.134098 AGTGACCAACCAACCAGACAG 60.134 52.381 0.00 0.00 0.00 3.51
771 819 0.916086 AGTGACCAACCAACCAGACA 59.084 50.000 0.00 0.00 0.00 3.41
772 820 1.676006 CAAGTGACCAACCAACCAGAC 59.324 52.381 0.00 0.00 0.00 3.51
773 821 1.562008 TCAAGTGACCAACCAACCAGA 59.438 47.619 0.00 0.00 0.00 3.86
774 822 1.949525 CTCAAGTGACCAACCAACCAG 59.050 52.381 0.00 0.00 0.00 4.00
775 823 1.409521 CCTCAAGTGACCAACCAACCA 60.410 52.381 0.00 0.00 0.00 3.67
795 843 1.134007 TGATCCCATGCACACCATCTC 60.134 52.381 0.00 0.00 29.71 2.75
796 844 0.921166 TGATCCCATGCACACCATCT 59.079 50.000 0.00 0.00 29.71 2.90
797 845 1.315690 CTGATCCCATGCACACCATC 58.684 55.000 0.00 0.00 29.71 3.51
798 846 0.627451 ACTGATCCCATGCACACCAT 59.373 50.000 0.00 0.00 33.39 3.55
799 847 0.405198 AACTGATCCCATGCACACCA 59.595 50.000 0.00 0.00 0.00 4.17
823 871 7.714377 TGGTTTTTGTCGGTCTAATAAAGTGTA 59.286 33.333 0.00 0.00 0.00 2.90
824 872 6.543100 TGGTTTTTGTCGGTCTAATAAAGTGT 59.457 34.615 0.00 0.00 0.00 3.55
826 874 6.993902 TCTGGTTTTTGTCGGTCTAATAAAGT 59.006 34.615 0.00 0.00 0.00 2.66
827 875 7.295930 GTCTGGTTTTTGTCGGTCTAATAAAG 58.704 38.462 0.00 0.00 0.00 1.85
828 876 6.073657 CGTCTGGTTTTTGTCGGTCTAATAAA 60.074 38.462 0.00 0.00 0.00 1.40
829 877 5.406175 CGTCTGGTTTTTGTCGGTCTAATAA 59.594 40.000 0.00 0.00 0.00 1.40
830 878 4.925054 CGTCTGGTTTTTGTCGGTCTAATA 59.075 41.667 0.00 0.00 0.00 0.98
835 883 0.041576 GCGTCTGGTTTTTGTCGGTC 60.042 55.000 0.00 0.00 0.00 4.79
846 894 3.052082 GCACATGCTGCGTCTGGT 61.052 61.111 0.00 0.00 35.72 4.00
864 912 3.117625 TGCCCTAGCTGCTAGAGTAGTTA 60.118 47.826 32.56 12.22 40.80 2.24
875 927 1.584380 GCTATGCATGCCCTAGCTGC 61.584 60.000 28.69 15.66 41.00 5.25
900 952 6.648310 GCATGTATATATAGCCTGCAGGTATG 59.352 42.308 32.81 19.51 39.50 2.39
904 956 5.027293 TGCATGTATATATAGCCTGCAGG 57.973 43.478 29.34 29.34 33.59 4.85
907 959 4.701765 AGCTGCATGTATATATAGCCTGC 58.298 43.478 1.02 11.52 31.82 4.85
908 960 4.981054 CGAGCTGCATGTATATATAGCCTG 59.019 45.833 1.02 0.00 31.82 4.85
909 961 4.500545 GCGAGCTGCATGTATATATAGCCT 60.501 45.833 1.02 0.00 45.45 4.58
910 962 3.738282 GCGAGCTGCATGTATATATAGCC 59.262 47.826 1.02 0.00 45.45 3.93
911 963 4.963237 GCGAGCTGCATGTATATATAGC 57.037 45.455 1.02 0.00 45.45 2.97
1014 1113 3.696898 GGCGTTGTTGTTGTCATTGTTA 58.303 40.909 0.00 0.00 0.00 2.41
1020 1119 2.405594 GCGGCGTTGTTGTTGTCA 59.594 55.556 9.37 0.00 0.00 3.58
1033 1132 4.078516 ACGGTAGTCCTTGGCGGC 62.079 66.667 0.00 0.00 0.00 6.53
1843 3406 4.632538 AACAAATTGATTAGGCGGTAGC 57.367 40.909 0.00 0.00 44.18 3.58
1907 3482 4.481112 GGCGGTGAATGCAAGCCG 62.481 66.667 14.46 14.46 46.17 5.52
1922 3497 6.540205 ACGATTTAATTAAGAAACACGAGGC 58.460 36.000 14.72 0.00 0.00 4.70
1923 3498 8.440833 AGAACGATTTAATTAAGAAACACGAGG 58.559 33.333 14.72 0.00 0.00 4.63
1926 3501 8.928844 ACAGAACGATTTAATTAAGAAACACG 57.071 30.769 0.00 0.00 0.00 4.49
1938 3521 7.789273 TGACCAAAACTACAGAACGATTTAA 57.211 32.000 0.00 0.00 0.00 1.52
1939 3522 7.572353 GCATGACCAAAACTACAGAACGATTTA 60.572 37.037 0.00 0.00 0.00 1.40
1980 3563 9.439500 AACTTACAACACCAAACGTACATATAT 57.561 29.630 0.00 0.00 0.00 0.86
1981 3564 8.830201 AACTTACAACACCAAACGTACATATA 57.170 30.769 0.00 0.00 0.00 0.86
2010 3593 4.990426 CACCAAATTAAACCCTGCAAAGAG 59.010 41.667 0.00 0.00 0.00 2.85
2015 3601 3.452627 ACAACACCAAATTAAACCCTGCA 59.547 39.130 0.00 0.00 0.00 4.41
2071 3657 0.449786 CCGAAACACACAGCACAACA 59.550 50.000 0.00 0.00 0.00 3.33
2074 3660 0.678366 AACCCGAAACACACAGCACA 60.678 50.000 0.00 0.00 0.00 4.57
2078 3664 5.738118 TTAACTAAACCCGAAACACACAG 57.262 39.130 0.00 0.00 0.00 3.66
2080 3666 6.303021 TGATTAACTAAACCCGAAACACAC 57.697 37.500 0.00 0.00 0.00 3.82
2087 4542 6.555463 AGGAAGATGATTAACTAAACCCGA 57.445 37.500 0.00 0.00 0.00 5.14
2088 4543 7.498443 AGTAGGAAGATGATTAACTAAACCCG 58.502 38.462 0.00 0.00 0.00 5.28
2103 4558 5.854010 TCTCGTGCATTTAGTAGGAAGAT 57.146 39.130 0.00 0.00 0.00 2.40
2112 4567 3.370978 ACGACCAATTCTCGTGCATTTAG 59.629 43.478 6.85 0.00 42.69 1.85
2120 4578 5.120208 CAGTGAATTAACGACCAATTCTCGT 59.880 40.000 16.28 2.47 46.20 4.18
2121 4579 5.120208 ACAGTGAATTAACGACCAATTCTCG 59.880 40.000 16.28 1.31 41.13 4.04
2130 4588 6.145534 TGAATGAGTGACAGTGAATTAACGAC 59.854 38.462 0.00 0.00 0.00 4.34
2143 4601 4.529769 AGAGAAGGTGATGAATGAGTGACA 59.470 41.667 0.00 0.00 0.00 3.58
2144 4602 5.083533 AGAGAAGGTGATGAATGAGTGAC 57.916 43.478 0.00 0.00 0.00 3.67
2145 4603 5.246883 TCAAGAGAAGGTGATGAATGAGTGA 59.753 40.000 0.00 0.00 0.00 3.41
2146 4604 5.485620 TCAAGAGAAGGTGATGAATGAGTG 58.514 41.667 0.00 0.00 0.00 3.51
2150 4608 4.094590 GTGCTCAAGAGAAGGTGATGAATG 59.905 45.833 0.32 0.00 0.00 2.67
2151 4609 4.260170 GTGCTCAAGAGAAGGTGATGAAT 58.740 43.478 0.32 0.00 0.00 2.57
2152 4610 3.557898 GGTGCTCAAGAGAAGGTGATGAA 60.558 47.826 0.32 0.00 0.00 2.57
2153 4611 2.027745 GGTGCTCAAGAGAAGGTGATGA 60.028 50.000 0.32 0.00 0.00 2.92
2155 4613 1.980765 TGGTGCTCAAGAGAAGGTGAT 59.019 47.619 0.32 0.00 0.00 3.06
2165 4623 4.836125 ACAAGTTTGTATGGTGCTCAAG 57.164 40.909 0.00 0.00 40.16 3.02
2191 5447 9.657419 ACACAAAAGAATCAGTTTCAAGAAATT 57.343 25.926 0.00 0.00 36.75 1.82
2196 5452 8.464770 TTTCACACAAAAGAATCAGTTTCAAG 57.535 30.769 0.00 0.00 36.75 3.02
2198 5454 8.824159 TTTTTCACACAAAAGAATCAGTTTCA 57.176 26.923 0.00 0.00 36.75 2.69
2221 5485 3.194755 GGGCAACAATAGATCCGGTTTTT 59.805 43.478 0.00 0.00 39.74 1.94
2223 6248 2.291282 TGGGCAACAATAGATCCGGTTT 60.291 45.455 0.00 0.00 39.74 3.27
2225 6250 0.916086 TGGGCAACAATAGATCCGGT 59.084 50.000 0.00 0.00 39.74 5.28
2230 6255 2.431782 GCAACCATGGGCAACAATAGAT 59.568 45.455 18.09 0.00 39.74 1.98
2232 6257 1.549620 TGCAACCATGGGCAACAATAG 59.450 47.619 18.09 0.00 37.03 1.73
2242 6267 2.360350 ACGGAGCTGCAACCATGG 60.360 61.111 11.19 11.19 0.00 3.66
2245 6270 3.414136 AACCACGGAGCTGCAACCA 62.414 57.895 5.91 0.00 0.00 3.67
2258 6283 1.673808 ATCTAGGACCCGCGAACCAC 61.674 60.000 8.23 0.00 0.00 4.16
2259 6284 1.380785 ATCTAGGACCCGCGAACCA 60.381 57.895 8.23 0.00 0.00 3.67
2267 6292 1.465200 GGTGAGCCGATCTAGGACCC 61.465 65.000 0.00 0.00 0.00 4.46
2296 6322 0.618458 ATGTGACCGGTAAGCATGGT 59.382 50.000 7.34 0.00 39.12 3.55
2305 6331 1.607628 GAGCGTAGATATGTGACCGGT 59.392 52.381 6.92 6.92 0.00 5.28
2306 6332 1.399855 CGAGCGTAGATATGTGACCGG 60.400 57.143 0.00 0.00 0.00 5.28
2329 6355 0.179156 CAAGCGCCCATGACAATGAC 60.179 55.000 2.29 0.00 35.67 3.06
2331 6357 1.517694 GCAAGCGCCCATGACAATG 60.518 57.895 2.29 0.00 0.00 2.82
2332 6358 1.940883 CTGCAAGCGCCCATGACAAT 61.941 55.000 2.29 0.00 37.32 2.71
2359 6385 4.828925 GAGCTGCAGAGGGGCGAC 62.829 72.222 20.43 0.00 36.28 5.19
2362 6388 4.486503 CTGGAGCTGCAGAGGGGC 62.487 72.222 29.60 1.38 0.00 5.80
2363 6389 4.486503 GCTGGAGCTGCAGAGGGG 62.487 72.222 36.18 13.11 38.21 4.79
2364 6390 4.486503 GGCTGGAGCTGCAGAGGG 62.487 72.222 36.18 13.50 41.70 4.30
2365 6391 4.834453 CGGCTGGAGCTGCAGAGG 62.834 72.222 36.18 22.71 40.93 3.69
2387 6413 1.340889 CCATGGGGAATATTGCAACCG 59.659 52.381 0.00 0.00 35.59 4.44
2397 6423 1.522900 CCTACCTCACCATGGGGAAT 58.477 55.000 19.55 11.90 41.85 3.01
2399 6425 1.004230 CCCTACCTCACCATGGGGA 59.996 63.158 17.84 17.84 41.85 4.81
2402 6428 1.224592 GCACCCTACCTCACCATGG 59.775 63.158 11.19 11.19 0.00 3.66
2406 6432 1.375523 CAACGCACCCTACCTCACC 60.376 63.158 0.00 0.00 0.00 4.02
2413 6439 1.300311 CGTGACACAACGCACCCTA 60.300 57.895 6.37 0.00 36.65 3.53
2414 6440 2.587753 CGTGACACAACGCACCCT 60.588 61.111 6.37 0.00 36.65 4.34
2415 6441 2.586635 TCGTGACACAACGCACCC 60.587 61.111 6.37 0.00 43.26 4.61
2416 6442 2.594962 CCTCGTGACACAACGCACC 61.595 63.158 6.37 0.00 43.26 5.01
2417 6443 0.944311 ATCCTCGTGACACAACGCAC 60.944 55.000 6.37 0.00 43.26 5.34
2418 6444 0.249699 AATCCTCGTGACACAACGCA 60.250 50.000 6.37 0.00 43.26 5.24
2419 6445 0.163788 CAATCCTCGTGACACAACGC 59.836 55.000 6.37 0.00 43.26 4.84
2420 6446 1.497991 ACAATCCTCGTGACACAACG 58.502 50.000 6.37 0.00 44.92 4.10
2435 6461 2.145397 TCGAGTCAGGGAGCTACAAT 57.855 50.000 0.00 0.00 0.00 2.71
2439 6465 0.259065 ACCATCGAGTCAGGGAGCTA 59.741 55.000 0.00 0.00 0.00 3.32
2442 6468 0.898320 ACAACCATCGAGTCAGGGAG 59.102 55.000 0.00 0.00 0.00 4.30
2443 6469 2.100197 CTACAACCATCGAGTCAGGGA 58.900 52.381 0.00 0.00 0.00 4.20
2445 6471 1.478510 AGCTACAACCATCGAGTCAGG 59.521 52.381 0.00 0.00 0.00 3.86
2446 6472 2.480416 GGAGCTACAACCATCGAGTCAG 60.480 54.545 0.00 0.00 0.00 3.51
2447 6473 1.476891 GGAGCTACAACCATCGAGTCA 59.523 52.381 0.00 0.00 0.00 3.41
2449 6475 0.824759 GGGAGCTACAACCATCGAGT 59.175 55.000 0.00 0.00 0.00 4.18
2451 6477 1.112113 GAGGGAGCTACAACCATCGA 58.888 55.000 0.00 0.00 0.00 3.59
2452 6478 0.105039 GGAGGGAGCTACAACCATCG 59.895 60.000 0.00 0.00 37.77 3.84
2455 6481 3.708210 CGGAGGGAGCTACAACCA 58.292 61.111 0.00 0.00 0.00 3.67
2468 6499 1.375523 GCTACAACCACCACCGGAG 60.376 63.158 9.46 0.00 0.00 4.63
2470 6501 2.359478 GGCTACAACCACCACCGG 60.359 66.667 0.00 0.00 0.00 5.28
2555 6586 2.723746 CAGTGCTGCAACCCACAC 59.276 61.111 2.77 5.33 34.48 3.82
2574 6605 2.988684 TTGTCCATGGCCGGCAAC 60.989 61.111 30.85 17.37 0.00 4.17
2575 6606 2.988684 GTTGTCCATGGCCGGCAA 60.989 61.111 30.85 20.37 0.00 4.52
2576 6607 3.582242 ATGTTGTCCATGGCCGGCA 62.582 57.895 30.85 15.30 30.69 5.69
2577 6608 2.755469 ATGTTGTCCATGGCCGGC 60.755 61.111 21.18 21.18 30.69 6.13
2578 6609 1.378382 TGATGTTGTCCATGGCCGG 60.378 57.895 6.96 0.00 32.56 6.13
2579 6610 0.677731 ACTGATGTTGTCCATGGCCG 60.678 55.000 6.96 0.00 32.56 6.13
2580 6611 1.098050 GACTGATGTTGTCCATGGCC 58.902 55.000 6.96 0.00 32.56 5.36
2581 6612 2.119801 AGACTGATGTTGTCCATGGC 57.880 50.000 6.96 2.72 35.21 4.40
2582 6613 3.438087 GTCAAGACTGATGTTGTCCATGG 59.562 47.826 4.97 4.97 35.21 3.66
2583 6614 4.067192 TGTCAAGACTGATGTTGTCCATG 58.933 43.478 1.53 0.00 35.21 3.66
2584 6615 4.067896 GTGTCAAGACTGATGTTGTCCAT 58.932 43.478 1.53 0.00 35.21 3.41
2585 6616 3.466836 GTGTCAAGACTGATGTTGTCCA 58.533 45.455 1.53 0.00 35.21 4.02
2586 6617 2.808543 GGTGTCAAGACTGATGTTGTCC 59.191 50.000 1.53 0.00 35.21 4.02
2587 6618 2.476619 CGGTGTCAAGACTGATGTTGTC 59.523 50.000 1.53 0.00 33.05 3.18
2588 6619 2.483876 CGGTGTCAAGACTGATGTTGT 58.516 47.619 1.53 0.00 33.05 3.32
2589 6620 1.195448 GCGGTGTCAAGACTGATGTTG 59.805 52.381 1.53 0.00 33.05 3.33
2590 6621 1.512926 GCGGTGTCAAGACTGATGTT 58.487 50.000 1.53 0.00 33.05 2.71
2591 6622 0.320771 GGCGGTGTCAAGACTGATGT 60.321 55.000 1.53 0.00 33.05 3.06
2592 6623 1.354337 CGGCGGTGTCAAGACTGATG 61.354 60.000 0.00 0.00 33.05 3.07
2593 6624 1.079819 CGGCGGTGTCAAGACTGAT 60.080 57.895 0.00 0.00 33.05 2.90
2594 6625 2.197605 TCGGCGGTGTCAAGACTGA 61.198 57.895 7.21 0.00 0.00 3.41
2595 6626 2.022129 GTCGGCGGTGTCAAGACTG 61.022 63.158 7.21 0.00 0.00 3.51
2596 6627 2.338984 GTCGGCGGTGTCAAGACT 59.661 61.111 7.21 0.00 0.00 3.24
2597 6628 3.103911 CGTCGGCGGTGTCAAGAC 61.104 66.667 7.21 0.00 0.00 3.01
2598 6629 3.289062 TCGTCGGCGGTGTCAAGA 61.289 61.111 10.62 0.00 38.89 3.02
2599 6630 3.103911 GTCGTCGGCGGTGTCAAG 61.104 66.667 10.62 0.00 38.89 3.02
2600 6631 4.651008 GGTCGTCGGCGGTGTCAA 62.651 66.667 10.62 0.00 38.89 3.18
2602 6633 4.430765 ATGGTCGTCGGCGGTGTC 62.431 66.667 10.62 0.00 38.89 3.67
2603 6634 4.430765 GATGGTCGTCGGCGGTGT 62.431 66.667 10.62 0.00 38.89 4.16
2616 6647 1.234615 ACAACTTTGACCGGCGATGG 61.235 55.000 9.30 0.00 0.00 3.51
2617 6648 0.110238 CACAACTTTGACCGGCGATG 60.110 55.000 9.30 0.00 0.00 3.84
2632 6663 2.868044 GCGCTTCTTCTCCTTCTCACAA 60.868 50.000 0.00 0.00 0.00 3.33
2645 6676 3.414700 CCAACGCTCGCGCTTCTT 61.415 61.111 11.65 0.00 44.19 2.52
2684 6715 2.762535 AAACCCTACAGTGGATGACG 57.237 50.000 0.00 0.00 0.00 4.35
2685 6716 4.546829 TGTAAACCCTACAGTGGATGAC 57.453 45.455 0.00 0.00 0.00 3.06
2686 6717 5.249622 TCATTGTAAACCCTACAGTGGATGA 59.750 40.000 7.34 1.82 36.31 2.92
2687 6718 5.496556 TCATTGTAAACCCTACAGTGGATG 58.503 41.667 7.34 0.00 36.31 3.51
2688 6719 5.250774 ACTCATTGTAAACCCTACAGTGGAT 59.749 40.000 7.34 0.00 36.31 3.41
2689 6720 4.595781 ACTCATTGTAAACCCTACAGTGGA 59.404 41.667 7.34 0.00 36.31 4.02
2690 6721 4.906618 ACTCATTGTAAACCCTACAGTGG 58.093 43.478 7.34 2.67 36.31 4.00
2692 6723 5.818678 TGACTCATTGTAAACCCTACAGT 57.181 39.130 0.00 0.00 0.00 3.55
2693 6724 6.464222 TCTTGACTCATTGTAAACCCTACAG 58.536 40.000 0.00 0.00 0.00 2.74
2694 6725 6.428083 TCTTGACTCATTGTAAACCCTACA 57.572 37.500 0.00 0.00 0.00 2.74
2695 6726 9.444600 TTTATCTTGACTCATTGTAAACCCTAC 57.555 33.333 0.00 0.00 0.00 3.18
2721 6960 0.982852 TCATCCACCGCCTCCATTCT 60.983 55.000 0.00 0.00 0.00 2.40
2723 6962 1.274703 ACTCATCCACCGCCTCCATT 61.275 55.000 0.00 0.00 0.00 3.16
2736 6975 9.420118 AGATATAAGGGATATGAGACACTCATC 57.580 37.037 15.95 5.84 46.83 2.92
2794 7033 5.310451 AGCTGATTGTCAATGGCAAAATTT 58.690 33.333 3.78 0.00 0.00 1.82
2801 7040 1.089920 ACGAGCTGATTGTCAATGGC 58.910 50.000 1.88 7.32 0.00 4.40
2802 7041 2.079158 ACACGAGCTGATTGTCAATGG 58.921 47.619 1.88 0.00 0.00 3.16
2803 7042 2.998670 AGACACGAGCTGATTGTCAATG 59.001 45.455 17.11 0.00 41.83 2.82
2804 7043 3.325293 AGACACGAGCTGATTGTCAAT 57.675 42.857 17.11 0.00 41.83 2.57
2805 7044 2.820059 AGACACGAGCTGATTGTCAA 57.180 45.000 17.11 0.00 41.83 3.18
2806 7045 2.802247 CAAAGACACGAGCTGATTGTCA 59.198 45.455 17.11 0.00 41.83 3.58
2807 7046 2.412065 GCAAAGACACGAGCTGATTGTC 60.412 50.000 9.86 9.86 40.04 3.18
2808 7047 1.532868 GCAAAGACACGAGCTGATTGT 59.467 47.619 0.00 0.00 0.00 2.71
2809 7048 1.532437 TGCAAAGACACGAGCTGATTG 59.468 47.619 0.00 0.00 0.00 2.67
2810 7049 1.802960 CTGCAAAGACACGAGCTGATT 59.197 47.619 0.00 0.00 0.00 2.57
2811 7050 1.436600 CTGCAAAGACACGAGCTGAT 58.563 50.000 0.00 0.00 0.00 2.90
2812 7051 0.601046 CCTGCAAAGACACGAGCTGA 60.601 55.000 0.00 0.00 0.00 4.26
2813 7052 0.882042 ACCTGCAAAGACACGAGCTG 60.882 55.000 0.00 0.00 0.00 4.24
2814 7053 0.882042 CACCTGCAAAGACACGAGCT 60.882 55.000 0.00 0.00 0.00 4.09
2815 7054 1.160329 ACACCTGCAAAGACACGAGC 61.160 55.000 0.00 0.00 0.00 5.03
2816 7055 0.861837 GACACCTGCAAAGACACGAG 59.138 55.000 0.00 0.00 0.00 4.18
2817 7056 0.464036 AGACACCTGCAAAGACACGA 59.536 50.000 0.00 0.00 0.00 4.35
2818 7057 0.583438 CAGACACCTGCAAAGACACG 59.417 55.000 0.00 0.00 33.07 4.49
2819 7058 0.947244 CCAGACACCTGCAAAGACAC 59.053 55.000 0.00 0.00 39.07 3.67
2820 7059 0.546122 ACCAGACACCTGCAAAGACA 59.454 50.000 0.00 0.00 39.07 3.41
2821 7060 1.680338 AACCAGACACCTGCAAAGAC 58.320 50.000 0.00 0.00 39.07 3.01
2822 7061 2.023673 CAAACCAGACACCTGCAAAGA 58.976 47.619 0.00 0.00 39.07 2.52
2823 7062 2.023673 TCAAACCAGACACCTGCAAAG 58.976 47.619 0.00 0.00 39.07 2.77
2824 7063 1.748493 GTCAAACCAGACACCTGCAAA 59.252 47.619 0.00 0.00 39.07 3.68
2825 7064 1.340502 TGTCAAACCAGACACCTGCAA 60.341 47.619 0.00 0.00 43.18 4.08
2826 7065 0.254462 TGTCAAACCAGACACCTGCA 59.746 50.000 0.00 0.00 43.18 4.41
2827 7066 3.094386 TGTCAAACCAGACACCTGC 57.906 52.632 0.00 0.00 43.18 4.85
2832 7071 3.136443 AGGATCTGTTGTCAAACCAGACA 59.864 43.478 7.78 0.00 46.12 3.41
2833 7072 3.744660 AGGATCTGTTGTCAAACCAGAC 58.255 45.455 7.78 3.83 38.99 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.