AutoCloner

Multiple sequence alignment - TraesCS5D01G561100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G561100	chr5D	100.000	3128	0	0	1	3128	561805151	561802024	0.000000e+00	5777.0
1	TraesCS5D01G561100	chr5D	88.474	1258	125	13	875	2112	562488406	562487149	0.000000e+00	1502.0
2	TraesCS5D01G561100	chr5D	88.394	1258	126	13	875	2112	562531251	562529994	0.000000e+00	1496.0
3	TraesCS5D01G561100	chr5D	85.714	1267	139	20	875	2121	562431920	562430676	0.000000e+00	1299.0
4	TraesCS5D01G561100	chr5D	80.597	402	51	12	875	1249	562414957	562414556	5.110000e-73	285.0
5	TraesCS5D01G561100	chr5D	83.735	166	17	6	2192	2356	562413625	562413469	6.990000e-32	148.0
6	TraesCS5D01G561100	chr7B	92.184	2610	134	20	543	3128	1020106	1022669	0.000000e+00	3626.0
7	TraesCS5D01G561100	chr7B	90.484	2522	170	31	646	3127	1153824	1156315	0.000000e+00	3264.0
8	TraesCS5D01G561100	chr7B	88.273	1262	123	14	875	2112	128382	129642	0.000000e+00	1487.0
9	TraesCS5D01G561100	chr7B	85.453	1258	139	18	875	2109	222272	223508	0.000000e+00	1269.0
10	TraesCS5D01G561100	chr7B	93.231	458	15	5	1	444	1019608	1020063	0.000000e+00	660.0
11	TraesCS5D01G561100	chr7B	91.005	189	14	3	1	187	1150078	1150265	5.180000e-63	252.0
12	TraesCS5D01G561100	chr7B	82.530	166	17	9	2192	2356	230189	230343	5.440000e-28	135.0
13	TraesCS5D01G561100	chr5B	92.171	1916	97	24	513	2403	711716005	711714118	0.000000e+00	2658.0
14	TraesCS5D01G561100	chr5B	85.215	1231	135	20	875	2080	712890361	712889153	0.000000e+00	1221.0
15	TraesCS5D01G561100	chr5B	82.773	743	82	30	2403	3128	711711525	711710812	3.430000e-174	621.0
16	TraesCS5D01G561100	chr5B	87.730	326	31	7	1	318	711720092	711719768	3.810000e-99	372.0
17	TraesCS5D01G561100	chr4B	86.667	90	10	2	402	491	529929729	529929642	7.140000e-17	99.0
18	TraesCS5D01G561100	chr4B	84.146	82	13	0	410	491	601790364	601790283	2.590000e-11	80.5
19	TraesCS5D01G561100	chr6D	86.047	86	12	0	409	494	26627086	26627001	3.320000e-15	93.5
20	TraesCS5D01G561100	chr1A	86.585	82	11	0	410	491	48579126	48579045	1.190000e-14	91.6
21	TraesCS5D01G561100	chr7A	86.076	79	11	0	410	488	559204834	559204912	5.560000e-13	86.1
22	TraesCS5D01G561100	chr7A	86.076	79	11	0	410	488	719012439	719012517	5.560000e-13	86.1
23	TraesCS5D01G561100	chr7A	86.076	79	11	0	410	488	719286308	719286386	5.560000e-13	86.1
24	TraesCS5D01G561100	chr1D	85.714	77	11	0	410	486	199923460	199923536	7.190000e-12	82.4
25	TraesCS5D01G561100	chr3A	84.810	79	12	0	410	488	581273476	581273554	2.590000e-11	80.5
26	TraesCS5D01G561100	chr6B	85.294	68	10	0	231	298	578896129	578896062	1.560000e-08	71.3
27	TraesCS5D01G561100	chr3B	89.583	48	3	2	175	220	554486385	554486338	3.370000e-05	60.2
28	TraesCS5D01G561100	chr2D	100.000	32	0	0	184	215	226544965	226544996	3.370000e-05	60.2
29	TraesCS5D01G561100	chr1B	92.857	42	2	1	175	215	145817681	145817640	3.370000e-05	60.2
30	TraesCS5D01G561100	chr1B	92.857	42	2	1	175	215	145837647	145837606	3.370000e-05	60.2
31	TraesCS5D01G561100	chrUn	96.875	32	1	0	184	215	367262115	367262146	2.000000e-03	54.7
32	TraesCS5D01G561100	chrUn	81.429	70	9	2	184	249	387888628	387888559	2.000000e-03	54.7
33	TraesCS5D01G561100	chr3D	80.488	82	7	8	175	249	348727101	348727022	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G561100	chr5D	561802024	561805151	3127	True	5777.0	5777	100.0000	1	3128	1	chr5D.!!$R1	3127
1	TraesCS5D01G561100	chr5D	562487149	562488406	1257	True	1502.0	1502	88.4740	875	2112	1	chr5D.!!$R3	1237
2	TraesCS5D01G561100	chr5D	562529994	562531251	1257	True	1496.0	1496	88.3940	875	2112	1	chr5D.!!$R4	1237
3	TraesCS5D01G561100	chr5D	562430676	562431920	1244	True	1299.0	1299	85.7140	875	2121	1	chr5D.!!$R2	1246
4	TraesCS5D01G561100	chr5D	562413469	562414957	1488	True	216.5	285	82.1660	875	2356	2	chr5D.!!$R5	1481
5	TraesCS5D01G561100	chr7B	1019608	1022669	3061	False	2143.0	3626	92.7075	1	3128	2	chr7B.!!$F4	3127
6	TraesCS5D01G561100	chr7B	1150078	1156315	6237	False	1758.0	3264	90.7445	1	3127	2	chr7B.!!$F5	3126
7	TraesCS5D01G561100	chr7B	128382	129642	1260	False	1487.0	1487	88.2730	875	2112	1	chr7B.!!$F1	1237
8	TraesCS5D01G561100	chr7B	222272	223508	1236	False	1269.0	1269	85.4530	875	2109	1	chr7B.!!$F2	1234
9	TraesCS5D01G561100	chr5B	712889153	712890361	1208	True	1221.0	1221	85.2150	875	2080	1	chr5B.!!$R1	1205
10	TraesCS5D01G561100	chr5B	711710812	711720092	9280	True	1217.0	2658	87.5580	1	3128	3	chr5B.!!$R2	3127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
866	4587	0.036388	TTTCAGTCGATCAGCCACCC	60.036	55.0	0.0	0.0	0.0	4.61	F
871	4592	0.107703	GTCGATCAGCCACCCATGAA	60.108	55.0	0.0	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1681	5543	1.004044	AGTGAAAGTCATGCCCTCTGG	59.996	52.381	0.00	0.0	0.00	3.86	R
2697	9163	1.065764	CCGCGTAGTGCATCAGCTA	59.934	57.895	4.92	0.0	46.97	3.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
281	302	3.742433	AGTCTCTCACACAACCTTCAG	57.258	47.619	0.00	0.00	0.00	3.02
291	312	5.008613	TCACACAACCTTCAGAAAGCATAAC	59.991	40.000	0.00	0.00	0.00	1.89
417	1472	5.658634	TGGCATCATACTATCATACTCCCTC	59.341	44.000	0.00	0.00	0.00	4.30
436	2303	9.495382	ACTCCCTCTGTTTCTAAATATAAGACT	57.505	33.333	0.00	0.00	0.00	3.24
473	2340	9.956720	AATAGTACAAACTACATACGGATGTAC	57.043	33.333	16.71	7.88	45.77	2.90
474	2341	7.395190	AGTACAAACTACATACGGATGTACA	57.605	36.000	16.71	0.00	44.77	2.90
475	2342	8.004087	AGTACAAACTACATACGGATGTACAT	57.996	34.615	16.71	8.43	44.77	2.29
476	2343	9.123902	AGTACAAACTACATACGGATGTACATA	57.876	33.333	16.71	0.00	44.77	2.29
522	4218	1.174078	TCAGCGTACGTCCAGTCCAA	61.174	55.000	17.90	0.00	0.00	3.53
529	4225	3.059834	CGTACGTCCAGTCCAATTAAACG	59.940	47.826	7.22	0.00	35.00	3.60
530	4226	2.419667	ACGTCCAGTCCAATTAAACGG	58.580	47.619	0.00	0.00	33.26	4.44
531	4227	2.037511	ACGTCCAGTCCAATTAAACGGA	59.962	45.455	0.00	0.00	33.26	4.69
752	4455	6.404734	GCTTGGACAAAGATGGTGTAAATAGG	60.405	42.308	0.00	0.00	38.24	2.57
794	4501	4.469945	AGTAGTTGGCCAGCTTAAGATACA	59.530	41.667	28.19	3.65	0.00	2.29
854	4575	0.521735	GCCACCCACGAATTTCAGTC	59.478	55.000	0.00	0.00	0.00	3.51
862	4583	2.029728	CACGAATTTCAGTCGATCAGCC	59.970	50.000	0.00	0.00	41.02	4.85
863	4584	2.270923	CGAATTTCAGTCGATCAGCCA	58.729	47.619	0.00	0.00	41.02	4.75
864	4585	2.029728	CGAATTTCAGTCGATCAGCCAC	59.970	50.000	0.00	0.00	41.02	5.01
865	4586	2.029838	ATTTCAGTCGATCAGCCACC	57.970	50.000	0.00	0.00	0.00	4.61
866	4587	0.036388	TTTCAGTCGATCAGCCACCC	60.036	55.000	0.00	0.00	0.00	4.61
867	4588	1.191489	TTCAGTCGATCAGCCACCCA	61.191	55.000	0.00	0.00	0.00	4.51
868	4589	0.977627	TCAGTCGATCAGCCACCCAT	60.978	55.000	0.00	0.00	0.00	4.00
869	4590	0.812811	CAGTCGATCAGCCACCCATG	60.813	60.000	0.00	0.00	0.00	3.66
870	4591	0.977627	AGTCGATCAGCCACCCATGA	60.978	55.000	0.00	0.00	0.00	3.07
871	4592	0.107703	GTCGATCAGCCACCCATGAA	60.108	55.000	0.00	0.00	0.00	2.57
872	4593	0.839277	TCGATCAGCCACCCATGAAT	59.161	50.000	0.00	0.00	0.00	2.57
873	4594	0.949397	CGATCAGCCACCCATGAATG	59.051	55.000	0.00	0.00	0.00	2.67
1151	4912	2.603776	GGGTGTCCTCCTCCGTGT	60.604	66.667	0.00	0.00	0.00	4.49
1489	5349	1.418097	TTGTGCTCTCAAGGGCAGGA	61.418	55.000	4.44	0.00	39.22	3.86
1551	5411	2.366916	TGATTTGTCCCGCAACCAATTT	59.633	40.909	0.00	0.00	36.72	1.82
1776	5638	2.285220	CGAGCTCCCAAATGTCATAACG	59.715	50.000	8.47	0.00	0.00	3.18
1821	5683	4.900684	TCGGGAGAAACAATGTTGTATCA	58.099	39.130	0.00	0.00	41.31	2.15
2063	5929	4.527509	ACAATATCGTATCTGGGAGCAG	57.472	45.455	0.00	0.00	0.00	4.24
2121	5987	5.949354	TGGGAATAACAAAGTTGTATCAGGG	59.051	40.000	0.00	0.00	41.31	4.45
2189	6055	6.287589	TCCTCTTGAACTTCTCAACTATCC	57.712	41.667	0.00	0.00	39.20	2.59
2214	6080	6.983307	CGAGGAGTTGAGATGAGATTATGTTT	59.017	38.462	0.00	0.00	0.00	2.83
2255	6121	4.948062	TCTGCTACTATCCTAGGCCATA	57.052	45.455	5.01	0.00	0.00	2.74
2580	9045	4.032960	TGCATATTTGTCTCAGTTGGGT	57.967	40.909	0.00	0.00	0.00	4.51
2596	9061	0.901124	GGGTCTGACTGAGCAGATGT	59.099	55.000	7.85	0.00	45.75	3.06
2601	9066	1.411977	CTGACTGAGCAGATGTAGGGG	59.588	57.143	4.21	0.00	38.14	4.79
2602	9067	0.105778	GACTGAGCAGATGTAGGGGC	59.894	60.000	4.21	0.00	0.00	5.80
2620	9085	2.411409	GGGCAAAATTATGTTGTGCACG	59.589	45.455	13.13	0.00	36.93	5.34
2641	9107	2.095372	GTCGTTGGTAGGCTGCAAATAC	59.905	50.000	4.64	1.20	0.00	1.89
2697	9163	1.053264	TTGGTGGCCTGCATTGGTTT	61.053	50.000	3.32	0.00	0.00	3.27
2698	9164	0.178950	TGGTGGCCTGCATTGGTTTA	60.179	50.000	3.32	0.00	0.00	2.01
2726	9193	0.515564	ACTACGCGGTGTTTGATTGC	59.484	50.000	12.47	0.00	0.00	3.56
2740	9207	5.942826	TGTTTGATTGCATACACTGGACATA	59.057	36.000	0.00	0.00	32.22	2.29
2741	9208	6.432472	TGTTTGATTGCATACACTGGACATAA	59.568	34.615	0.00	0.00	32.22	1.90
2742	9209	6.435430	TTGATTGCATACACTGGACATAAC	57.565	37.500	0.00	0.00	0.00	1.89
2845	9321	4.148825	GAGCATGGAGTCGCGGGT	62.149	66.667	6.13	0.00	0.00	5.28
2847	9323	2.279517	GCATGGAGTCGCGGGTAG	60.280	66.667	6.13	0.00	0.00	3.18
2849	9325	2.043248	ATGGAGTCGCGGGTAGGT	60.043	61.111	6.13	0.00	0.00	3.08
2905	9381	1.871080	CTGTCGCCACAGGGATAATC	58.129	55.000	3.17	0.00	45.75	1.75
2906	9382	0.468226	TGTCGCCACAGGGATAATCC	59.532	55.000	0.00	0.00	37.29	3.01
2907	9383	0.468226	GTCGCCACAGGGATAATCCA	59.532	55.000	0.00	0.00	38.64	3.41
2908	9384	1.072331	GTCGCCACAGGGATAATCCAT	59.928	52.381	0.00	0.00	38.64	3.41
2951	9427	2.683933	GGGACGAGAAGGAGGGCA	60.684	66.667	0.00	0.00	0.00	5.36
2952	9428	2.066999	GGGACGAGAAGGAGGGCAT	61.067	63.158	0.00	0.00	0.00	4.40
2953	9429	1.627297	GGGACGAGAAGGAGGGCATT	61.627	60.000	0.00	0.00	0.00	3.56
2957	9433	0.826715	CGAGAAGGAGGGCATTGAGA	59.173	55.000	0.00	0.00	0.00	3.27
2990	9466	3.194861	GAGGATAAATACAGTGCGCACA	58.805	45.455	39.21	21.91	0.00	4.57
3031	9514	2.426023	GACAGGAGGCCACAACGT	59.574	61.111	5.01	0.00	0.00	3.99
3037	9524	4.657824	AGGCCACAACGTCGACGG	62.658	66.667	37.89	24.94	44.95	4.79
3056	9543	1.594293	CGGCGGCAATGTAGTAGGG	60.594	63.158	10.53	0.00	0.00	3.53
3086	9576	1.872679	GCGAGAGAAACTACGCCGG	60.873	63.158	0.00	0.00	44.27	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	9	1.941975	AGTTTAACCGTGGTTTCACCG	59.058	47.619	9.96	0.00	42.58	4.94
266	287	2.945008	TGCTTTCTGAAGGTTGTGTGAG	59.055	45.455	1.37	0.00	33.34	3.51
445	2312	9.880157	ACATCCGTATGTAGTTTGTACTATTTT	57.120	29.630	0.00	0.00	44.66	1.82
447	2314	9.956720	GTACATCCGTATGTAGTTTGTACTATT	57.043	33.333	0.46	0.00	46.68	1.73
448	2315	9.123902	TGTACATCCGTATGTAGTTTGTACTAT	57.876	33.333	0.46	0.00	46.68	2.12
449	2316	8.504812	TGTACATCCGTATGTAGTTTGTACTA	57.495	34.615	0.46	0.00	46.68	1.82
450	2317	7.395190	TGTACATCCGTATGTAGTTTGTACT	57.605	36.000	0.46	0.00	46.68	2.73
451	2318	9.390795	CTATGTACATCCGTATGTAGTTTGTAC	57.609	37.037	12.68	0.00	46.68	2.90
452	2319	9.341078	TCTATGTACATCCGTATGTAGTTTGTA	57.659	33.333	12.68	0.00	46.68	2.41
453	2320	8.133627	GTCTATGTACATCCGTATGTAGTTTGT	58.866	37.037	12.68	0.00	46.68	2.83
454	2321	8.132995	TGTCTATGTACATCCGTATGTAGTTTG	58.867	37.037	12.68	0.00	46.68	2.93
455	2322	8.229253	TGTCTATGTACATCCGTATGTAGTTT	57.771	34.615	12.68	0.00	46.68	2.66
456	2323	7.812690	TGTCTATGTACATCCGTATGTAGTT	57.187	36.000	12.68	0.00	46.68	2.24
457	2324	7.997773	ATGTCTATGTACATCCGTATGTAGT	57.002	36.000	12.68	0.00	46.68	2.73
505	2372	0.606604	AATTGGACTGGACGTACGCT	59.393	50.000	16.72	2.20	0.00	5.07
508	2375	3.368843	CCGTTTAATTGGACTGGACGTAC	59.631	47.826	0.00	0.00	0.00	3.67
511	4207	2.690786	TCCGTTTAATTGGACTGGACG	58.309	47.619	0.00	0.00	0.00	4.79
553	4251	2.481276	CGTTCGATTGTGGCTATCCAGA	60.481	50.000	0.00	0.00	44.48	3.86
669	4367	4.611943	ACGACAGACGATGAATAGATTGG	58.388	43.478	0.00	0.00	45.77	3.16
752	4455	2.808543	ACTGACGCAAGGATTTGTCTTC	59.191	45.455	0.00	0.00	46.39	2.87
794	4501	2.494870	GCCCATTCATGCTTGTCTCTTT	59.505	45.455	0.00	0.00	0.00	2.52
854	4575	0.949397	CATTCATGGGTGGCTGATCG	59.051	55.000	0.00	0.00	0.00	3.69
866	4587	1.406539	GTAAGTGCCTGCCCATTCATG	59.593	52.381	0.00	0.00	0.00	3.07
867	4588	1.285962	AGTAAGTGCCTGCCCATTCAT	59.714	47.619	0.00	0.00	0.00	2.57
868	4589	0.698238	AGTAAGTGCCTGCCCATTCA	59.302	50.000	0.00	0.00	0.00	2.57
869	4590	1.474077	CAAGTAAGTGCCTGCCCATTC	59.526	52.381	0.00	0.00	0.00	2.67
870	4591	1.203050	ACAAGTAAGTGCCTGCCCATT	60.203	47.619	0.00	0.00	0.00	3.16
871	4592	0.405585	ACAAGTAAGTGCCTGCCCAT	59.594	50.000	0.00	0.00	0.00	4.00
872	4593	1.003118	CTACAAGTAAGTGCCTGCCCA	59.997	52.381	0.00	0.00	0.00	5.36
873	4594	1.003233	ACTACAAGTAAGTGCCTGCCC	59.997	52.381	0.00	0.00	0.00	5.36
1416	5276	2.488167	CCCACCAATAATACCATCGCCA	60.488	50.000	0.00	0.00	0.00	5.69
1551	5411	1.449423	CGATGGAATGGTGCCGACA	60.449	57.895	0.00	0.00	0.00	4.35
1629	5491	4.022589	CGTGTCAAACTCTTAGGTACCTCA	60.023	45.833	20.32	6.67	0.00	3.86
1675	5537	3.790437	CATGCCCTCTGGACGCCT	61.790	66.667	0.00	0.00	0.00	5.52
1681	5543	1.004044	AGTGAAAGTCATGCCCTCTGG	59.996	52.381	0.00	0.00	0.00	3.86
1776	5638	1.613437	CTCACAACATTGTTGGTCCCC	59.387	52.381	28.10	0.00	39.91	4.81
2063	5929	4.202050	GGTTCATCCCAGATACAACATTGC	60.202	45.833	0.00	0.00	0.00	3.56
2189	6055	6.083098	ACATAATCTCATCTCAACTCCTCG	57.917	41.667	0.00	0.00	0.00	4.63
2214	6080	6.096282	AGCAGAAAAACAAACTACAAAGGCTA	59.904	34.615	0.00	0.00	0.00	3.93
2565	9030	2.771943	AGTCAGACCCAACTGAGACAAA	59.228	45.455	0.00	0.00	45.67	2.83
2580	9045	2.382882	CCCTACATCTGCTCAGTCAGA	58.617	52.381	1.87	1.87	45.97	3.27
2596	9061	3.834813	TGCACAACATAATTTTGCCCCTA	59.165	39.130	0.00	0.00	31.94	3.53
2601	9066	3.181554	CGACGTGCACAACATAATTTTGC	60.182	43.478	18.64	0.00	0.00	3.68
2602	9067	3.971871	ACGACGTGCACAACATAATTTTG	59.028	39.130	18.64	0.00	0.00	2.44
2620	9085	1.165270	ATTTGCAGCCTACCAACGAC	58.835	50.000	0.00	0.00	0.00	4.34
2641	9107	2.216750	CTTCCCCAATGCAGCCAACG	62.217	60.000	0.00	0.00	0.00	4.10
2697	9163	1.065764	CCGCGTAGTGCATCAGCTA	59.934	57.895	4.92	0.00	46.97	3.32
2698	9164	2.202797	CCGCGTAGTGCATCAGCT	60.203	61.111	4.92	0.00	46.97	4.24
2740	9207	7.599245	GTCATGTGTAGCTGTTAACTCTTAGTT	59.401	37.037	7.22	0.00	41.97	2.24
2741	9208	7.091443	GTCATGTGTAGCTGTTAACTCTTAGT	58.909	38.462	7.22	0.00	0.00	2.24
2742	9209	7.062371	GTGTCATGTGTAGCTGTTAACTCTTAG	59.938	40.741	7.22	0.00	0.00	2.18
2815	9291	3.063743	ATGCTCATCGCGTCGGACA	62.064	57.895	5.77	0.66	43.27	4.02
2845	9321	2.207229	CCGCCGATGGGATCACCTA	61.207	63.158	0.00	0.00	41.11	3.08
2849	9325	3.559263	ATGCCGCCGATGGGATCA	61.559	61.111	0.00	0.00	34.62	2.92
2894	9370	4.040047	TGTGTCTCATGGATTATCCCTGT	58.960	43.478	14.54	0.00	35.03	4.00
2895	9371	4.504514	CCTGTGTCTCATGGATTATCCCTG	60.505	50.000	8.98	9.42	35.03	4.45
2896	9372	3.649981	CCTGTGTCTCATGGATTATCCCT	59.350	47.826	8.98	0.00	35.03	4.20
2897	9373	3.244700	CCCTGTGTCTCATGGATTATCCC	60.245	52.174	8.98	0.00	35.03	3.85
2898	9374	3.648067	TCCCTGTGTCTCATGGATTATCC	59.352	47.826	3.91	3.91	36.25	2.59
2899	9375	4.963318	TCCCTGTGTCTCATGGATTATC	57.037	45.455	0.00	0.00	36.25	1.75
2900	9376	5.715439	TTTCCCTGTGTCTCATGGATTAT	57.285	39.130	0.00	0.00	39.80	1.28
2901	9377	5.512942	TTTTCCCTGTGTCTCATGGATTA	57.487	39.130	0.00	0.00	39.80	1.75
2902	9378	4.387026	TTTTCCCTGTGTCTCATGGATT	57.613	40.909	0.00	0.00	39.80	3.01
2903	9379	4.530875	GATTTTCCCTGTGTCTCATGGAT	58.469	43.478	0.00	0.00	39.80	3.41
2904	9380	3.308402	GGATTTTCCCTGTGTCTCATGGA	60.308	47.826	0.00	0.00	38.69	3.41
2905	9381	3.019564	GGATTTTCCCTGTGTCTCATGG	58.980	50.000	0.00	0.00	33.92	3.66
2906	9382	3.689347	TGGATTTTCCCTGTGTCTCATG	58.311	45.455	0.00	0.00	35.03	3.07
2907	9383	4.018141	TCATGGATTTTCCCTGTGTCTCAT	60.018	41.667	0.00	0.00	35.03	2.90
2908	9384	3.330405	TCATGGATTTTCCCTGTGTCTCA	59.670	43.478	0.00	0.00	35.03	3.27
2909	9385	3.944015	CTCATGGATTTTCCCTGTGTCTC	59.056	47.826	0.00	0.00	35.03	3.36
2910	9386	3.588842	TCTCATGGATTTTCCCTGTGTCT	59.411	43.478	0.00	0.00	35.03	3.41
2911	9387	3.955471	TCTCATGGATTTTCCCTGTGTC	58.045	45.455	0.00	0.00	35.03	3.67
2912	9388	4.338879	CTTCTCATGGATTTTCCCTGTGT	58.661	43.478	0.00	0.00	35.03	3.72
2951	9427	1.821753	CTCACCGTCCTCTGTCTCAAT	59.178	52.381	0.00	0.00	0.00	2.57
2952	9428	1.248486	CTCACCGTCCTCTGTCTCAA	58.752	55.000	0.00	0.00	0.00	3.02
2953	9429	0.609406	CCTCACCGTCCTCTGTCTCA	60.609	60.000	0.00	0.00	0.00	3.27
2957	9433	2.526888	TTATCCTCACCGTCCTCTGT	57.473	50.000	0.00	0.00	0.00	3.41
3037	9524	2.244651	CCTACTACATTGCCGCCGC	61.245	63.158	0.00	0.00	0.00	6.53
3071	9558	1.215647	CAGCCGGCGTAGTTTCTCT	59.784	57.895	23.20	0.00	0.00	3.10
3086	9576	0.179111	TACTACACTGGCATCGCAGC	60.179	55.000	0.00	0.00	0.00	5.25

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.