Multiple sequence alignment - TraesCS5D01G560500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G560500 chr5D 100.000 8735 0 0 1 8735 561646324 561637590 0.000000e+00 16131.0
1 TraesCS5D01G560500 chr5D 92.462 2149 145 9 2825 4966 561897498 561899636 0.000000e+00 3055.0
2 TraesCS5D01G560500 chr5D 92.085 1415 84 17 2825 4219 561924833 561926239 0.000000e+00 1967.0
3 TraesCS5D01G560500 chr5D 86.190 1680 228 4 7056 8733 555428385 555426708 0.000000e+00 1814.0
4 TraesCS5D01G560500 chr5D 92.997 1171 61 8 1621 2770 561923638 561924808 0.000000e+00 1688.0
5 TraesCS5D01G560500 chr5D 89.604 1212 70 22 4229 5433 561926315 561927477 0.000000e+00 1489.0
6 TraesCS5D01G560500 chr5D 83.574 1595 248 13 7146 8733 561992317 561993904 0.000000e+00 1482.0
7 TraesCS5D01G560500 chr5D 84.574 1491 228 2 7056 8545 560501713 560503202 0.000000e+00 1478.0
8 TraesCS5D01G560500 chr5D 88.790 1124 107 10 1649 2770 561896367 561897473 0.000000e+00 1360.0
9 TraesCS5D01G560500 chr5D 100.000 616 0 0 9120 9735 561637205 561636590 0.000000e+00 1138.0
10 TraesCS5D01G560500 chr5D 88.728 896 73 13 6180 7075 560534872 560534005 0.000000e+00 1070.0
11 TraesCS5D01G560500 chr5D 84.125 1052 109 19 4229 5278 552858039 552857044 0.000000e+00 965.0
12 TraesCS5D01G560500 chr5D 88.105 765 79 3 6311 7075 551834358 551835110 0.000000e+00 898.0
13 TraesCS5D01G560500 chr5D 88.606 746 71 6 6331 7075 560500715 560501447 0.000000e+00 894.0
14 TraesCS5D01G560500 chr5D 91.636 550 46 0 6526 7075 555429200 555428651 0.000000e+00 761.0
15 TraesCS5D01G560500 chr5D 88.485 495 41 2 5696 6175 560497727 560498220 1.410000e-162 584.0
16 TraesCS5D01G560500 chr5D 86.716 542 38 18 954 1485 561923090 561923607 1.100000e-158 571.0
17 TraesCS5D01G560500 chr5D 91.517 389 27 1 5696 6084 560537238 560536856 1.860000e-146 531.0
18 TraesCS5D01G560500 chr5D 86.503 489 39 11 1000 1485 552861277 552860813 6.740000e-141 512.0
19 TraesCS5D01G560500 chr5D 83.669 496 77 4 9120 9612 555427008 555426514 1.920000e-126 464.0
20 TraesCS5D01G560500 chr5D 87.240 384 36 8 4986 5365 551882735 551883109 9.040000e-115 425.0
21 TraesCS5D01G560500 chr5D 85.099 302 40 5 1009 1306 556541073 556540773 4.420000e-78 303.0
22 TraesCS5D01G560500 chr5D 81.410 312 42 10 6180 6488 555431990 555431692 3.510000e-59 241.0
23 TraesCS5D01G560500 chr5B 89.772 3422 296 34 817 4220 711414339 711410954 0.000000e+00 4331.0
24 TraesCS5D01G560500 chr5B 85.933 3796 380 66 1660 5433 711930827 711934490 0.000000e+00 3910.0
25 TraesCS5D01G560500 chr5B 86.611 3249 293 51 993 4219 711961659 711964787 0.000000e+00 3459.0
26 TraesCS5D01G560500 chr5B 89.280 2612 239 20 1620 4220 711353548 711350967 0.000000e+00 3234.0
27 TraesCS5D01G560500 chr5B 87.135 1679 214 2 7056 8733 695483678 695485355 0.000000e+00 1903.0
28 TraesCS5D01G560500 chr5B 86.972 1681 213 6 7056 8733 695788461 695790138 0.000000e+00 1886.0
29 TraesCS5D01G560500 chr5B 83.742 1673 248 19 7073 8733 710961937 710960277 0.000000e+00 1561.0
30 TraesCS5D01G560500 chr5B 83.363 1677 259 19 7067 8733 711944848 711946514 0.000000e+00 1533.0
31 TraesCS5D01G560500 chr5B 84.605 1494 222 8 7056 8545 711132859 711131370 0.000000e+00 1478.0
32 TraesCS5D01G560500 chr5B 84.762 1260 124 30 4135 5389 711738222 711739418 0.000000e+00 1201.0
33 TraesCS5D01G560500 chr5B 84.833 1200 127 20 4229 5417 711333109 711331954 0.000000e+00 1157.0
34 TraesCS5D01G560500 chr5B 86.986 899 90 14 6180 7075 695787321 695788195 0.000000e+00 987.0
35 TraesCS5D01G560500 chr5B 86.222 929 104 12 6177 7098 711134013 711133102 0.000000e+00 985.0
36 TraesCS5D01G560500 chr5B 86.889 900 89 16 6180 7075 695482538 695483412 0.000000e+00 981.0
37 TraesCS5D01G560500 chr5B 89.277 802 61 16 1578 2374 711735744 711736525 0.000000e+00 981.0
38 TraesCS5D01G560500 chr5B 86.268 903 100 14 6180 7075 711241011 711240126 0.000000e+00 959.0
39 TraesCS5D01G560500 chr5B 86.009 922 95 22 6180 7098 711913516 711912626 0.000000e+00 957.0
40 TraesCS5D01G560500 chr5B 88.591 745 73 3 6331 7075 711183827 711183095 0.000000e+00 894.0
41 TraesCS5D01G560500 chr5B 86.853 753 66 14 4229 4966 711350892 711350158 0.000000e+00 811.0
42 TraesCS5D01G560500 chr5B 90.146 548 50 3 9120 9665 643325239 643324694 0.000000e+00 710.0
43 TraesCS5D01G560500 chr5B 82.824 850 83 33 980 1805 712206719 712207529 0.000000e+00 702.0
44 TraesCS5D01G560500 chr5B 89.388 490 41 5 5696 6174 711136058 711135569 3.010000e-169 606.0
45 TraesCS5D01G560500 chr5B 90.639 438 32 3 5696 6126 711243606 711243171 3.050000e-159 573.0
46 TraesCS5D01G560500 chr5B 85.133 565 63 9 6186 6747 711829999 711830545 8.540000e-155 558.0
47 TraesCS5D01G560500 chr5B 87.398 492 42 10 5696 6175 711914375 711913892 1.850000e-151 547.0
48 TraesCS5D01G560500 chr5B 87.071 495 49 1 5696 6175 711186418 711185924 6.650000e-151 545.0
49 TraesCS5D01G560500 chr5B 87.821 468 46 4 4496 4956 711406810 711406347 1.110000e-148 538.0
50 TraesCS5D01G560500 chr5B 90.488 389 37 0 5696 6084 711942118 711942506 1.870000e-141 514.0
51 TraesCS5D01G560500 chr5B 90.488 389 34 1 5696 6084 711828131 711828516 2.430000e-140 510.0
52 TraesCS5D01G560500 chr5B 89.356 404 20 8 13 415 711355824 711355443 4.090000e-133 486.0
53 TraesCS5D01G560500 chr5B 84.362 486 72 4 9130 9612 695485065 695485549 3.180000e-129 473.0
54 TraesCS5D01G560500 chr5B 83.871 496 76 4 9120 9612 695789838 695790332 4.120000e-128 470.0
55 TraesCS5D01G560500 chr5B 80.594 505 92 5 9120 9620 710960289 710959787 1.530000e-102 385.0
56 TraesCS5D01G560500 chr5B 86.944 337 28 9 11 347 711415698 711415378 2.000000e-96 364.0
57 TraesCS5D01G560500 chr5B 85.227 352 42 7 964 1306 711930357 711930707 4.330000e-93 353.0
58 TraesCS5D01G560500 chr5B 79.394 495 90 6 9130 9620 711148548 711148062 1.210000e-88 339.0
59 TraesCS5D01G560500 chr5B 85.231 325 41 4 1000 1322 711354078 711353759 2.620000e-85 327.0
60 TraesCS5D01G560500 chr5B 83.146 356 55 2 4990 5341 711406340 711405986 4.390000e-83 320.0
61 TraesCS5D01G560500 chr5B 84.918 305 43 1 8429 8733 643325528 643325227 1.230000e-78 305.0
62 TraesCS5D01G560500 chr5B 90.598 234 17 4 414 647 711355330 711355102 1.230000e-78 305.0
63 TraesCS5D01G560500 chr5B 87.072 263 34 0 8471 8733 695484949 695485211 2.060000e-76 298.0
64 TraesCS5D01G560500 chr5B 86.692 263 35 0 8471 8733 695789732 695789994 9.560000e-75 292.0
65 TraesCS5D01G560500 chr5B 85.512 283 29 5 4229 4505 711410879 711410603 1.600000e-72 285.0
66 TraesCS5D01G560500 chr5B 92.500 160 8 3 509 668 711415308 711415153 9.840000e-55 226.0
67 TraesCS5D01G560500 chr5B 82.781 151 11 7 1398 1533 711353719 711353569 4.780000e-23 121.0
68 TraesCS5D01G560500 chr5B 87.342 79 6 2 9576 9650 711880911 711880989 4.840000e-13 87.9
69 TraesCS5D01G560500 chr5B 94.872 39 1 1 756 794 711414376 711414339 1.060000e-04 60.2
70 TraesCS5D01G560500 chr7B 89.449 2578 239 18 1649 4221 890579 888030 0.000000e+00 3223.0
71 TraesCS5D01G560500 chr7B 87.530 2879 246 45 1382 4218 1348253 1351060 0.000000e+00 3223.0
72 TraesCS5D01G560500 chr7B 89.682 2074 174 22 1567 3626 834753 832706 0.000000e+00 2608.0
73 TraesCS5D01G560500 chr7B 88.124 2164 211 22 2825 4956 1306195 1308344 0.000000e+00 2531.0
74 TraesCS5D01G560500 chr7B 88.010 1643 152 19 2984 4620 1103112 1101509 0.000000e+00 1901.0
75 TraesCS5D01G560500 chr7B 86.121 1477 199 6 7056 8529 1324004 1325477 0.000000e+00 1587.0
76 TraesCS5D01G560500 chr7B 91.731 1040 80 4 1731 2770 1305134 1306167 0.000000e+00 1439.0
77 TraesCS5D01G560500 chr7B 84.370 1190 133 20 4229 5417 883486 882349 0.000000e+00 1118.0
78 TraesCS5D01G560500 chr7B 84.370 1190 133 20 4229 5417 887957 886820 0.000000e+00 1118.0
79 TraesCS5D01G560500 chr7B 83.635 1216 120 26 4229 5417 1034448 1033285 0.000000e+00 1070.0
80 TraesCS5D01G560500 chr7B 93.496 615 29 3 9123 9735 1373391 1373996 0.000000e+00 904.0
81 TraesCS5D01G560500 chr7B 86.683 826 94 7 6250 7075 1322929 1323738 0.000000e+00 902.0
82 TraesCS5D01G560500 chr7B 87.399 746 72 10 4229 4966 1351137 1351868 0.000000e+00 837.0
83 TraesCS5D01G560500 chr7B 87.705 488 48 7 5696 6174 1314552 1315036 8.540000e-155 558.0
84 TraesCS5D01G560500 chr7B 87.387 444 42 9 4981 5417 1101214 1100778 1.890000e-136 497.0
85 TraesCS5D01G560500 chr7B 87.437 398 29 10 1 392 1303229 1303611 1.160000e-118 438.0
86 TraesCS5D01G560500 chr7B 82.078 385 65 3 9121 9502 1371764 1372147 9.430000e-85 326.0
87 TraesCS5D01G560500 chr7B 81.912 387 64 4 9120 9502 1373244 1373628 1.220000e-83 322.0
88 TraesCS5D01G560500 chr7B 84.015 269 11 10 442 707 1303607 1303846 7.600000e-56 230.0
89 TraesCS5D01G560500 chr7B 92.079 101 6 2 829 928 1304507 1304606 3.670000e-29 141.0
90 TraesCS5D01G560500 chr4B 88.475 1397 147 11 2827 4219 656880585 656881971 0.000000e+00 1676.0
91 TraesCS5D01G560500 chr4B 86.721 1220 134 16 1568 2770 656879350 656880558 0.000000e+00 1330.0
92 TraesCS5D01G560500 chr4B 83.794 506 41 10 993 1485 656878913 656879390 8.970000e-120 442.0
93 TraesCS5D01G560500 chr4B 87.132 272 32 3 5425 5694 173975217 173975487 1.230000e-78 305.0
94 TraesCS5D01G560500 chr4B 85.348 273 38 2 5425 5695 211968183 211967911 2.070000e-71 281.0
95 TraesCS5D01G560500 chr4D 87.377 1220 126 19 1568 2770 509854674 509853466 0.000000e+00 1375.0
96 TraesCS5D01G560500 chr4D 87.606 355 41 3 4990 5342 509851483 509851130 9.100000e-110 409.0
97 TraesCS5D01G560500 chr4D 88.278 273 28 4 5425 5695 65544903 65545173 3.390000e-84 324.0
98 TraesCS5D01G560500 chr4D 84.466 309 19 5 1181 1488 509854911 509854631 2.680000e-70 278.0
99 TraesCS5D01G560500 chr5A 86.241 1221 136 19 1576 2770 698692216 698691002 0.000000e+00 1295.0
100 TraesCS5D01G560500 chr5A 87.104 473 48 9 1000 1467 698692672 698692208 3.120000e-144 523.0
101 TraesCS5D01G560500 chr5A 88.169 355 37 3 4990 5342 698689033 698688682 1.510000e-112 418.0
102 TraesCS5D01G560500 chr5A 87.868 272 31 2 5425 5694 620044320 620044049 1.580000e-82 318.0
103 TraesCS5D01G560500 chr5A 85.348 273 38 2 5425 5695 6298882 6299154 2.070000e-71 281.0
104 TraesCS5D01G560500 chr1D 85.434 968 94 26 1660 2607 438372155 438373095 0.000000e+00 963.0
105 TraesCS5D01G560500 chr1D 85.348 273 38 2 5425 5695 408387733 408388005 2.070000e-71 281.0
106 TraesCS5D01G560500 chr7A 88.211 492 42 8 5696 6175 688999223 688998736 3.050000e-159 573.0
107 TraesCS5D01G560500 chr4A 88.081 495 43 3 5696 6175 603676308 603676801 3.050000e-159 573.0
108 TraesCS5D01G560500 chr4A 88.565 446 41 9 5696 6136 603700008 603700448 5.180000e-147 532.0
109 TraesCS5D01G560500 chr7D 87.823 271 31 2 5425 5694 534433188 534433457 5.670000e-82 316.0
110 TraesCS5D01G560500 chr2A 86.813 273 33 3 5425 5695 728353891 728354162 1.590000e-77 302.0
111 TraesCS5D01G560500 chr3D 85.348 273 38 2 5425 5695 272533646 272533374 2.070000e-71 281.0
112 TraesCS5D01G560500 chr1B 81.090 312 51 8 1000 1306 594144440 594144748 9.770000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G560500 chr5D 561636590 561646324 9734 True 8634.500000 16131 100.000000 1 9735 2 chr5D.!!$R5 9734
1 TraesCS5D01G560500 chr5D 561896367 561899636 3269 False 2207.500000 3055 90.626000 1649 4966 2 chr5D.!!$F5 3317
2 TraesCS5D01G560500 chr5D 561992317 561993904 1587 False 1482.000000 1482 83.574000 7146 8733 1 chr5D.!!$F3 1587
3 TraesCS5D01G560500 chr5D 561923090 561927477 4387 False 1428.750000 1967 90.350500 954 5433 4 chr5D.!!$F6 4479
4 TraesCS5D01G560500 chr5D 560497727 560503202 5475 False 985.333333 1478 87.221667 5696 8545 3 chr5D.!!$F4 2849
5 TraesCS5D01G560500 chr5D 551834358 551835110 752 False 898.000000 898 88.105000 6311 7075 1 chr5D.!!$F1 764
6 TraesCS5D01G560500 chr5D 555426514 555431990 5476 True 820.000000 1814 85.726250 6180 9612 4 chr5D.!!$R3 3432
7 TraesCS5D01G560500 chr5D 560534005 560537238 3233 True 800.500000 1070 90.122500 5696 7075 2 chr5D.!!$R4 1379
8 TraesCS5D01G560500 chr5D 552857044 552861277 4233 True 738.500000 965 85.314000 1000 5278 2 chr5D.!!$R2 4278
9 TraesCS5D01G560500 chr5B 711961659 711964787 3128 False 3459.000000 3459 86.611000 993 4219 1 chr5B.!!$F2 3226
10 TraesCS5D01G560500 chr5B 711930357 711934490 4133 False 2131.500000 3910 85.580000 964 5433 2 chr5B.!!$F8 4469
11 TraesCS5D01G560500 chr5B 711331954 711333109 1155 True 1157.000000 1157 84.833000 4229 5417 1 chr5B.!!$R2 1188
12 TraesCS5D01G560500 chr5B 711735744 711739418 3674 False 1091.000000 1201 87.019500 1578 5389 2 chr5B.!!$F6 3811
13 TraesCS5D01G560500 chr5B 711942118 711946514 4396 False 1023.500000 1533 86.925500 5696 8733 2 chr5B.!!$F9 3037
14 TraesCS5D01G560500 chr5B 711131370 711136058 4688 True 1023.000000 1478 86.738333 5696 8545 3 chr5B.!!$R5 2849
15 TraesCS5D01G560500 chr5B 710959787 710961937 2150 True 973.000000 1561 82.168000 7073 9620 2 chr5B.!!$R4 2547
16 TraesCS5D01G560500 chr5B 695482538 695485549 3011 False 913.750000 1903 86.364500 6180 9612 4 chr5B.!!$F4 3432
17 TraesCS5D01G560500 chr5B 695787321 695790332 3011 False 908.750000 1886 86.130250 6180 9612 4 chr5B.!!$F5 3432
18 TraesCS5D01G560500 chr5B 711350158 711355824 5666 True 880.666667 3234 87.349833 13 4966 6 chr5B.!!$R8 4953
19 TraesCS5D01G560500 chr5B 711405986 711415698 9712 True 874.885714 4331 88.652429 11 5341 7 chr5B.!!$R9 5330
20 TraesCS5D01G560500 chr5B 711240126 711243606 3480 True 766.000000 959 88.453500 5696 7075 2 chr5B.!!$R7 1379
21 TraesCS5D01G560500 chr5B 711912626 711914375 1749 True 752.000000 957 86.703500 5696 7098 2 chr5B.!!$R10 1402
22 TraesCS5D01G560500 chr5B 711183095 711186418 3323 True 719.500000 894 87.831000 5696 7075 2 chr5B.!!$R6 1379
23 TraesCS5D01G560500 chr5B 712206719 712207529 810 False 702.000000 702 82.824000 980 1805 1 chr5B.!!$F3 825
24 TraesCS5D01G560500 chr5B 711828131 711830545 2414 False 534.000000 558 87.810500 5696 6747 2 chr5B.!!$F7 1051
25 TraesCS5D01G560500 chr5B 643324694 643325528 834 True 507.500000 710 87.532000 8429 9665 2 chr5B.!!$R3 1236
26 TraesCS5D01G560500 chr7B 832706 834753 2047 True 2608.000000 2608 89.682000 1567 3626 1 chr7B.!!$R1 2059
27 TraesCS5D01G560500 chr7B 1348253 1351868 3615 False 2030.000000 3223 87.464500 1382 4966 2 chr7B.!!$F4 3584
28 TraesCS5D01G560500 chr7B 882349 890579 8230 True 1819.666667 3223 86.063000 1649 5417 3 chr7B.!!$R3 3768
29 TraesCS5D01G560500 chr7B 1322929 1325477 2548 False 1244.500000 1587 86.402000 6250 8529 2 chr7B.!!$F3 2279
30 TraesCS5D01G560500 chr7B 1100778 1103112 2334 True 1199.000000 1901 87.698500 2984 5417 2 chr7B.!!$R4 2433
31 TraesCS5D01G560500 chr7B 1033285 1034448 1163 True 1070.000000 1070 83.635000 4229 5417 1 chr7B.!!$R2 1188
32 TraesCS5D01G560500 chr7B 1303229 1308344 5115 False 955.800000 2531 88.677200 1 4956 5 chr7B.!!$F2 4955
33 TraesCS5D01G560500 chr7B 1371764 1373996 2232 False 517.333333 904 85.828667 9120 9735 3 chr7B.!!$F5 615
34 TraesCS5D01G560500 chr4B 656878913 656881971 3058 False 1149.333333 1676 86.330000 993 4219 3 chr4B.!!$F2 3226
35 TraesCS5D01G560500 chr4D 509851130 509854911 3781 True 687.333333 1375 86.483000 1181 5342 3 chr4D.!!$R1 4161
36 TraesCS5D01G560500 chr5A 698688682 698692672 3990 True 745.333333 1295 87.171333 1000 5342 3 chr5A.!!$R2 4342
37 TraesCS5D01G560500 chr1D 438372155 438373095 940 False 963.000000 963 85.434000 1660 2607 1 chr1D.!!$F2 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 2036 0.530431 GCACACAACCAAGCCCAAAG 60.530 55.0 0.00 0.00 0.00 2.77 F
1550 3055 0.037877 AAGAGGAATGCTGCTGCTGT 59.962 50.0 17.00 4.24 40.48 4.40 F
3146 4777 0.110056 GTGGTGAAGTCTGCGCAATG 60.110 55.0 13.05 0.00 0.00 2.82 F
4182 5942 0.384309 TTAGAGAGTATGGCGGTGCG 59.616 55.0 0.00 0.00 0.00 5.34 F
5472 15672 0.035152 TTCACGGCCTCAATCATGCT 60.035 50.0 0.00 0.00 0.00 3.79 F
5646 15846 0.031585 CGGAATCCATGGCATGCTTG 59.968 55.0 22.02 15.10 0.00 4.01 F
5668 15868 0.112995 AGTTGCCAGCCCAAATGAGA 59.887 50.0 0.00 0.00 0.00 3.27 F
7428 25377 0.250295 TTGTGGGCACAGTAGAGCAC 60.250 55.0 0.00 0.00 42.94 4.40 F
8544 26493 0.107945 GCATGAAGAACCTCTCCGCT 60.108 55.0 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 3264 0.035152 CTGCTGGTTGGGATAGTGCA 60.035 55.000 0.00 0.00 0.00 4.57 R
3365 4996 1.125021 CTCCGACATCGCGAATATTGC 59.875 52.381 15.24 2.43 38.18 3.56 R
5005 15185 0.392706 TCTTGCTCTTCCGTGAAGCA 59.607 50.000 8.32 2.57 39.29 3.91 R
5627 15827 0.031585 CAAGCATGCCATGGATTCCG 59.968 55.000 18.40 0.00 0.00 4.30 R
6518 24182 0.246635 GCAGTAACGGGCTCTCTTCA 59.753 55.000 0.00 0.00 0.00 3.02 R
7224 25173 0.341258 AGGAGGGGAGCTCATTGAGA 59.659 55.000 17.87 0.00 0.00 3.27 R
7612 25561 0.543749 AGCCTGCCCAGTACAGATTC 59.456 55.000 0.00 0.00 37.32 2.52 R
8575 26524 0.322997 CCCGGTAATGTTTCCAGGCA 60.323 55.000 0.00 0.00 0.00 4.75 R
9448 28631 1.009829 CGCAGGTGATAAGTTGCTCC 58.990 55.000 0.00 0.00 34.50 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.891908 ACATTATTAAGGACCAGCTGTCAATT 59.108 34.615 13.81 10.86 46.38 2.32
222 228 3.181510 GCGCATCGATCTTGGTTAAAGTT 60.182 43.478 0.30 0.00 37.18 2.66
295 302 8.150945 AGCATGGGTTTATGAATACAGTACTAG 58.849 37.037 0.00 0.00 0.00 2.57
315 322 4.699925 AGTAGTTGTGCCTCAAGGTTTA 57.300 40.909 0.00 0.00 36.66 2.01
320 327 4.097892 AGTTGTGCCTCAAGGTTTAAACTG 59.902 41.667 17.50 9.43 36.66 3.16
406 413 6.699575 ACACAAAAATCAACAAGCTCTACT 57.300 33.333 0.00 0.00 0.00 2.57
407 414 6.498304 ACACAAAAATCAACAAGCTCTACTG 58.502 36.000 0.00 0.00 0.00 2.74
480 601 4.079787 TCTCCACTTTTTATATGCCTGCCT 60.080 41.667 0.00 0.00 0.00 4.75
482 603 3.491447 CCACTTTTTATATGCCTGCCTGC 60.491 47.826 0.00 0.00 0.00 4.85
498 619 2.925724 CCTGCGGTATACCCAATGAAA 58.074 47.619 16.47 0.00 0.00 2.69
499 620 3.283751 CCTGCGGTATACCCAATGAAAA 58.716 45.455 16.47 0.00 0.00 2.29
583 704 9.660180 AGAGATAAGATGGAAGAGTTTGTAAAC 57.340 33.333 0.00 0.00 39.17 2.01
626 749 6.432472 AGAGCCATATATGCTTTTCCTTTAGC 59.568 38.462 7.24 1.15 39.69 3.09
647 770 6.521527 AGCTTGGATCAGGATAACCTAATT 57.478 37.500 0.00 0.00 45.94 1.40
648 771 7.633018 AGCTTGGATCAGGATAACCTAATTA 57.367 36.000 0.00 0.00 45.94 1.40
649 772 8.045720 AGCTTGGATCAGGATAACCTAATTAA 57.954 34.615 0.00 0.00 45.94 1.40
650 773 8.673251 AGCTTGGATCAGGATAACCTAATTAAT 58.327 33.333 0.00 0.00 45.94 1.40
653 776 9.573166 TTGGATCAGGATAACCTAATTAATGTG 57.427 33.333 0.00 0.00 45.94 3.21
667 790 7.770433 CCTAATTAATGTGTTGAGGACATCAGA 59.230 37.037 0.00 0.00 41.10 3.27
669 792 7.798596 ATTAATGTGTTGAGGACATCAGATC 57.201 36.000 0.00 0.00 41.10 2.75
670 793 3.236632 TGTGTTGAGGACATCAGATCG 57.763 47.619 0.00 0.00 41.10 3.69
742 948 4.106909 CCCCGTAAAAATGGTTAAATCGC 58.893 43.478 0.00 0.00 0.00 4.58
753 959 2.315901 GTTAAATCGCTGCACACAACC 58.684 47.619 0.00 0.00 0.00 3.77
754 960 1.598882 TAAATCGCTGCACACAACCA 58.401 45.000 0.00 0.00 0.00 3.67
755 961 0.743688 AAATCGCTGCACACAACCAA 59.256 45.000 0.00 0.00 0.00 3.67
757 963 2.133742 ATCGCTGCACACAACCAAGC 62.134 55.000 0.00 0.00 0.00 4.01
758 964 2.028043 GCTGCACACAACCAAGCC 59.972 61.111 0.00 0.00 0.00 4.35
759 965 2.730094 CTGCACACAACCAAGCCC 59.270 61.111 0.00 0.00 0.00 5.19
760 966 2.043551 TGCACACAACCAAGCCCA 60.044 55.556 0.00 0.00 0.00 5.36
763 2036 0.530431 GCACACAACCAAGCCCAAAG 60.530 55.000 0.00 0.00 0.00 2.77
1541 3043 1.101331 CCCAAGAGCAAGAGGAATGC 58.899 55.000 0.00 0.00 44.15 3.56
1547 3049 1.139095 GCAAGAGGAATGCTGCTGC 59.861 57.895 8.89 8.89 40.64 5.25
1550 3055 0.037877 AAGAGGAATGCTGCTGCTGT 59.962 50.000 17.00 4.24 40.48 4.40
1601 3112 4.687215 TGCTGCTGCCGGACTCAC 62.687 66.667 5.05 0.00 38.71 3.51
1603 3114 4.007644 CTGCTGCCGGACTCACCA 62.008 66.667 5.05 0.00 38.90 4.17
1604 3115 3.535629 CTGCTGCCGGACTCACCAA 62.536 63.158 5.05 0.00 38.90 3.67
1605 3116 3.050275 GCTGCCGGACTCACCAAC 61.050 66.667 5.05 0.00 38.90 3.77
1644 3173 4.502087 GCTAGTGCTGATGATGGTGATACA 60.502 45.833 0.00 0.00 36.03 2.29
1735 3264 3.826157 TGATTCCGTCTCCAATTTGCTTT 59.174 39.130 0.00 0.00 0.00 3.51
1748 3292 3.658757 TTTGCTTTGCACTATCCCAAC 57.341 42.857 0.00 0.00 38.71 3.77
1749 3293 1.544724 TGCTTTGCACTATCCCAACC 58.455 50.000 0.00 0.00 31.71 3.77
1750 3294 1.202989 TGCTTTGCACTATCCCAACCA 60.203 47.619 0.00 0.00 31.71 3.67
1794 3353 0.614697 TCCAAGATCGGCCTCAGACA 60.615 55.000 0.00 0.00 0.00 3.41
1992 3581 1.143073 GACCACTTCCAAGTCAGGGTT 59.857 52.381 2.41 0.00 37.08 4.11
2319 3917 6.014584 TGAAAACAGTTGATCCACTAGAGCTA 60.015 38.462 0.00 0.00 0.00 3.32
2477 4078 2.103373 TGCAGCCAAAACAGTTGGTAA 58.897 42.857 6.95 0.00 41.53 2.85
2482 4083 3.568430 AGCCAAAACAGTTGGTAAGCTAC 59.432 43.478 6.95 0.00 41.53 3.58
2654 4258 3.891977 GGCCTTTTCCCTGAAGATTATCC 59.108 47.826 0.00 0.00 0.00 2.59
2818 4434 8.160521 TGATCGATACAAACAAAAGAAGGAAA 57.839 30.769 0.00 0.00 0.00 3.13
2899 4527 4.401925 AGAATGCCTCAATATAAGTGGCC 58.598 43.478 14.84 0.00 43.19 5.36
2918 4546 3.181456 GGCCTAGATTTCAGAGCTGATGT 60.181 47.826 0.00 0.00 39.64 3.06
2926 4554 1.699083 TCAGAGCTGATGTTGTCCCAA 59.301 47.619 0.00 0.00 34.14 4.12
3030 4661 4.281941 AGGATAGACATTGCTAATCTGCGA 59.718 41.667 0.00 0.00 35.36 5.10
3041 4672 4.093408 TGCTAATCTGCGAAGTTTGATGAC 59.907 41.667 0.00 0.00 35.36 3.06
3081 4712 8.682936 AAGAAGAAAGAATCAACAAGCTTCTA 57.317 30.769 0.00 0.00 39.69 2.10
3125 4756 8.813643 ATAAATAGTCTGCGTGTCCTATTTAC 57.186 34.615 15.30 0.00 41.48 2.01
3141 4772 2.148916 TTACAGTGGTGAAGTCTGCG 57.851 50.000 0.00 0.00 33.12 5.18
3146 4777 0.110056 GTGGTGAAGTCTGCGCAATG 60.110 55.000 13.05 0.00 0.00 2.82
3184 4815 1.815003 CAAAACTGATCCACCTCCAGC 59.185 52.381 0.00 0.00 0.00 4.85
3208 4839 7.449704 AGCACCTCAAAATTAGTTCATCTTTCT 59.550 33.333 0.00 0.00 0.00 2.52
3308 4939 2.695359 TGGTCGTTCTGATTTACCTGC 58.305 47.619 0.00 0.00 0.00 4.85
3360 4991 0.468226 TCCGTGCTGGAAGTCAACTT 59.532 50.000 0.00 0.00 46.38 2.66
3376 5007 3.093574 CAACTTCACTGCAATATTCGCG 58.906 45.455 0.00 0.00 0.00 5.87
3385 5016 1.125021 GCAATATTCGCGATGTCGGAG 59.875 52.381 10.88 0.00 40.23 4.63
3482 5113 2.430465 GGCATTGTCAGAGCTTGAAGA 58.570 47.619 0.00 0.00 37.61 2.87
3485 5116 3.750130 GCATTGTCAGAGCTTGAAGAAGA 59.250 43.478 0.00 0.00 37.61 2.87
3528 5159 1.672356 CGTGGCAACCAAGGAGGAG 60.672 63.158 0.00 0.00 41.22 3.69
3568 5199 9.745018 AACTGATATTGAAAAGGAATCTGAAGA 57.255 29.630 0.00 0.00 0.00 2.87
3586 5217 7.461749 TCTGAAGAAATTGGAATTACTCTGGT 58.538 34.615 0.00 0.00 0.00 4.00
3587 5218 7.607991 TCTGAAGAAATTGGAATTACTCTGGTC 59.392 37.037 0.00 0.00 0.00 4.02
3588 5219 7.230747 TGAAGAAATTGGAATTACTCTGGTCA 58.769 34.615 0.00 0.00 0.00 4.02
3592 5223 1.559682 TGGAATTACTCTGGTCAGGCC 59.440 52.381 0.00 0.00 37.90 5.19
3948 5657 2.752354 TGTGGAACCTAATTGCCATTCG 59.248 45.455 0.00 0.00 34.36 3.34
4017 5726 0.907486 TGATGCCCTTCTCTGAGGTG 59.093 55.000 4.59 0.00 34.88 4.00
4103 5812 2.804527 CTCACACATCCACACTGACAAG 59.195 50.000 0.00 0.00 0.00 3.16
4106 5815 2.945008 ACACATCCACACTGACAAGTTG 59.055 45.455 0.00 0.00 32.98 3.16
4107 5816 2.945008 CACATCCACACTGACAAGTTGT 59.055 45.455 8.61 8.61 32.98 3.32
4113 5822 4.126437 CCACACTGACAAGTTGTGATGTA 58.874 43.478 14.57 0.00 37.50 2.29
4128 5879 5.674525 TGTGATGTAGGAAGATGTGATTCC 58.325 41.667 0.00 0.00 45.56 3.01
4160 5920 4.555511 GCGTTATGATGGAAAGAGATTGGC 60.556 45.833 0.00 0.00 0.00 4.52
4182 5942 0.384309 TTAGAGAGTATGGCGGTGCG 59.616 55.000 0.00 0.00 0.00 5.34
4505 10196 2.703007 AGGAGAATGGAGGAGGAATTCG 59.297 50.000 0.00 0.00 35.83 3.34
4564 10255 5.518812 TCAATTGTGGTCGATTTTTCTGTG 58.481 37.500 5.13 0.00 0.00 3.66
4883 15060 7.309133 CATCTCTAGATTGGAGGTACTCATCAC 60.309 44.444 0.00 0.00 45.28 3.06
4966 15143 6.239008 CCACACACTTGTATTTGGTTCTGATT 60.239 38.462 0.00 0.00 33.30 2.57
4967 15144 7.202526 CACACACTTGTATTTGGTTCTGATTT 58.797 34.615 0.00 0.00 33.30 2.17
4968 15145 7.706179 CACACACTTGTATTTGGTTCTGATTTT 59.294 33.333 0.00 0.00 33.30 1.82
4969 15146 8.257306 ACACACTTGTATTTGGTTCTGATTTTT 58.743 29.630 0.00 0.00 32.60 1.94
5005 15185 2.444766 GGTTCTGATGGGAGGATGGAAT 59.555 50.000 0.00 0.00 0.00 3.01
5074 15255 6.430308 CCTCCAGAAACTAAGTTTTTACTCCC 59.570 42.308 0.00 0.00 35.77 4.30
5323 15515 2.420022 CACTTGTCGCCTCCCTATTTTG 59.580 50.000 0.00 0.00 0.00 2.44
5331 15523 4.398044 TCGCCTCCCTATTTTGATTGTTTC 59.602 41.667 0.00 0.00 0.00 2.78
5367 15562 1.208535 ACGAGGTTTATTCGCCATCCA 59.791 47.619 0.00 0.00 41.57 3.41
5369 15564 2.224079 CGAGGTTTATTCGCCATCCATG 59.776 50.000 0.00 0.00 0.00 3.66
5420 15620 9.639601 CTGTTGTCAAATCATACAGACTACTAA 57.360 33.333 0.00 0.00 38.74 2.24
5422 15622 8.584600 GTTGTCAAATCATACAGACTACTAACG 58.415 37.037 0.00 0.00 35.10 3.18
5423 15623 7.255569 TGTCAAATCATACAGACTACTAACGG 58.744 38.462 0.00 0.00 32.41 4.44
5424 15624 7.094075 TGTCAAATCATACAGACTACTAACGGT 60.094 37.037 0.00 0.00 32.41 4.83
5425 15625 7.758528 GTCAAATCATACAGACTACTAACGGTT 59.241 37.037 0.00 0.00 0.00 4.44
5426 15626 7.758076 TCAAATCATACAGACTACTAACGGTTG 59.242 37.037 3.07 0.00 0.00 3.77
5427 15627 4.990257 TCATACAGACTACTAACGGTTGC 58.010 43.478 3.07 0.00 0.00 4.17
5428 15628 4.703575 TCATACAGACTACTAACGGTTGCT 59.296 41.667 3.07 0.00 0.00 3.91
5429 15629 3.572604 ACAGACTACTAACGGTTGCTC 57.427 47.619 3.07 0.00 0.00 4.26
5430 15630 3.155501 ACAGACTACTAACGGTTGCTCT 58.844 45.455 3.07 0.00 0.00 4.09
5431 15631 3.190953 ACAGACTACTAACGGTTGCTCTC 59.809 47.826 3.07 0.00 0.00 3.20
5432 15632 2.754002 AGACTACTAACGGTTGCTCTCC 59.246 50.000 3.07 0.00 0.00 3.71
5433 15633 1.823610 ACTACTAACGGTTGCTCTCCC 59.176 52.381 3.07 0.00 0.00 4.30
5434 15634 2.100989 CTACTAACGGTTGCTCTCCCT 58.899 52.381 3.07 0.00 0.00 4.20
5435 15635 0.608640 ACTAACGGTTGCTCTCCCTG 59.391 55.000 3.07 0.00 0.00 4.45
5436 15636 0.608640 CTAACGGTTGCTCTCCCTGT 59.391 55.000 3.07 0.00 0.00 4.00
5437 15637 1.002087 CTAACGGTTGCTCTCCCTGTT 59.998 52.381 3.07 0.00 0.00 3.16
5438 15638 0.535102 AACGGTTGCTCTCCCTGTTG 60.535 55.000 0.00 0.00 0.00 3.33
5439 15639 1.672356 CGGTTGCTCTCCCTGTTGG 60.672 63.158 0.00 0.00 0.00 3.77
5440 15640 1.973812 GGTTGCTCTCCCTGTTGGC 60.974 63.158 0.00 0.00 0.00 4.52
5441 15641 2.032528 TTGCTCTCCCTGTTGGCG 59.967 61.111 0.00 0.00 0.00 5.69
5442 15642 3.551496 TTGCTCTCCCTGTTGGCGG 62.551 63.158 0.00 0.00 0.00 6.13
5443 15643 4.021925 GCTCTCCCTGTTGGCGGT 62.022 66.667 0.00 0.00 0.00 5.68
5444 15644 2.750350 CTCTCCCTGTTGGCGGTT 59.250 61.111 0.00 0.00 0.00 4.44
5445 15645 1.672356 CTCTCCCTGTTGGCGGTTG 60.672 63.158 0.00 0.00 0.00 3.77
5446 15646 3.365265 CTCCCTGTTGGCGGTTGC 61.365 66.667 0.00 0.00 41.71 4.17
5456 15656 3.124686 GCGGTTGCCACCTTTTCA 58.875 55.556 5.29 0.00 41.64 2.69
5457 15657 1.299850 GCGGTTGCCACCTTTTCAC 60.300 57.895 5.29 0.00 41.64 3.18
5458 15658 1.008995 CGGTTGCCACCTTTTCACG 60.009 57.895 5.29 0.00 41.64 4.35
5459 15659 1.362355 GGTTGCCACCTTTTCACGG 59.638 57.895 0.00 0.00 40.44 4.94
5460 15660 1.299850 GTTGCCACCTTTTCACGGC 60.300 57.895 0.00 0.00 45.11 5.68
5461 15661 2.494530 TTGCCACCTTTTCACGGCC 61.495 57.895 0.00 0.00 44.22 6.13
5462 15662 2.597510 GCCACCTTTTCACGGCCT 60.598 61.111 0.00 0.00 38.67 5.19
5463 15663 2.626780 GCCACCTTTTCACGGCCTC 61.627 63.158 0.00 0.00 38.67 4.70
5464 15664 1.228124 CCACCTTTTCACGGCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
5465 15665 0.821711 CCACCTTTTCACGGCCTCAA 60.822 55.000 0.00 0.00 0.00 3.02
5466 15666 1.247567 CACCTTTTCACGGCCTCAAT 58.752 50.000 0.00 0.00 0.00 2.57
5467 15667 1.200020 CACCTTTTCACGGCCTCAATC 59.800 52.381 0.00 0.00 0.00 2.67
5468 15668 1.202879 ACCTTTTCACGGCCTCAATCA 60.203 47.619 0.00 0.00 0.00 2.57
5469 15669 2.094675 CCTTTTCACGGCCTCAATCAT 58.905 47.619 0.00 0.00 0.00 2.45
5470 15670 2.159338 CCTTTTCACGGCCTCAATCATG 60.159 50.000 0.00 0.00 0.00 3.07
5471 15671 0.810648 TTTCACGGCCTCAATCATGC 59.189 50.000 0.00 0.00 0.00 4.06
5472 15672 0.035152 TTCACGGCCTCAATCATGCT 60.035 50.000 0.00 0.00 0.00 3.79
5473 15673 0.745486 TCACGGCCTCAATCATGCTG 60.745 55.000 0.00 0.00 37.40 4.41
5474 15674 1.452651 ACGGCCTCAATCATGCTGG 60.453 57.895 0.00 0.00 35.68 4.85
5475 15675 1.452651 CGGCCTCAATCATGCTGGT 60.453 57.895 0.00 0.00 0.00 4.00
5476 15676 1.721664 CGGCCTCAATCATGCTGGTG 61.722 60.000 0.00 0.00 0.00 4.17
5477 15677 0.394762 GGCCTCAATCATGCTGGTGA 60.395 55.000 0.00 0.00 0.00 4.02
5478 15678 1.466856 GCCTCAATCATGCTGGTGAA 58.533 50.000 0.00 0.00 0.00 3.18
5479 15679 1.404391 GCCTCAATCATGCTGGTGAAG 59.596 52.381 0.00 0.00 0.00 3.02
5480 15680 2.942752 GCCTCAATCATGCTGGTGAAGA 60.943 50.000 0.00 0.00 0.00 2.87
5481 15681 2.681848 CCTCAATCATGCTGGTGAAGAC 59.318 50.000 0.00 0.00 0.00 3.01
5482 15682 3.340928 CTCAATCATGCTGGTGAAGACA 58.659 45.455 0.00 0.00 0.00 3.41
5483 15683 3.076621 TCAATCATGCTGGTGAAGACAC 58.923 45.455 0.00 0.00 45.27 3.67
5484 15684 3.079578 CAATCATGCTGGTGAAGACACT 58.920 45.455 0.00 0.00 45.32 3.55
5485 15685 2.174363 TCATGCTGGTGAAGACACTG 57.826 50.000 0.00 0.00 45.32 3.66
5486 15686 1.693606 TCATGCTGGTGAAGACACTGA 59.306 47.619 0.00 0.00 45.32 3.41
5487 15687 2.303890 TCATGCTGGTGAAGACACTGAT 59.696 45.455 0.00 0.00 45.32 2.90
5488 15688 2.462456 TGCTGGTGAAGACACTGATC 57.538 50.000 0.00 0.00 45.32 2.92
5489 15689 1.973515 TGCTGGTGAAGACACTGATCT 59.026 47.619 0.00 0.00 45.32 2.75
5490 15690 2.028658 TGCTGGTGAAGACACTGATCTC 60.029 50.000 0.00 0.00 45.32 2.75
5491 15691 2.676463 GCTGGTGAAGACACTGATCTCC 60.676 54.545 0.00 0.00 45.32 3.71
5492 15692 2.830923 CTGGTGAAGACACTGATCTCCT 59.169 50.000 0.00 0.00 45.32 3.69
5493 15693 2.828520 TGGTGAAGACACTGATCTCCTC 59.171 50.000 0.00 0.00 45.32 3.71
5494 15694 2.167487 GGTGAAGACACTGATCTCCTCC 59.833 54.545 0.00 0.00 45.32 4.30
5495 15695 3.096092 GTGAAGACACTGATCTCCTCCT 58.904 50.000 0.00 0.00 42.99 3.69
5496 15696 3.130340 GTGAAGACACTGATCTCCTCCTC 59.870 52.174 0.00 0.00 42.99 3.71
5497 15697 2.452600 AGACACTGATCTCCTCCTCC 57.547 55.000 0.00 0.00 0.00 4.30
5498 15698 1.643286 AGACACTGATCTCCTCCTCCA 59.357 52.381 0.00 0.00 0.00 3.86
5499 15699 2.247111 AGACACTGATCTCCTCCTCCAT 59.753 50.000 0.00 0.00 0.00 3.41
5500 15700 2.627699 GACACTGATCTCCTCCTCCATC 59.372 54.545 0.00 0.00 0.00 3.51
5501 15701 2.023598 ACACTGATCTCCTCCTCCATCA 60.024 50.000 0.00 0.00 0.00 3.07
5502 15702 3.036819 CACTGATCTCCTCCTCCATCAA 58.963 50.000 0.00 0.00 0.00 2.57
5503 15703 3.069872 CACTGATCTCCTCCTCCATCAAG 59.930 52.174 0.00 0.00 0.00 3.02
5504 15704 2.037511 CTGATCTCCTCCTCCATCAAGC 59.962 54.545 0.00 0.00 0.00 4.01
5505 15705 1.347378 GATCTCCTCCTCCATCAAGCC 59.653 57.143 0.00 0.00 0.00 4.35
5506 15706 1.045350 TCTCCTCCTCCATCAAGCCG 61.045 60.000 0.00 0.00 0.00 5.52
5507 15707 2.203126 CCTCCTCCATCAAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
5508 15708 2.203126 CTCCTCCATCAAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
5509 15709 3.764160 CTCCTCCATCAAGCCGCCC 62.764 68.421 0.00 0.00 0.00 6.13
5510 15710 4.883354 CCTCCATCAAGCCGCCCC 62.883 72.222 0.00 0.00 0.00 5.80
5511 15711 3.801997 CTCCATCAAGCCGCCCCT 61.802 66.667 0.00 0.00 0.00 4.79
5512 15712 3.764160 CTCCATCAAGCCGCCCCTC 62.764 68.421 0.00 0.00 0.00 4.30
5513 15713 3.801997 CCATCAAGCCGCCCCTCT 61.802 66.667 0.00 0.00 0.00 3.69
5514 15714 2.273449 CATCAAGCCGCCCCTCTT 59.727 61.111 0.00 0.00 0.00 2.85
5515 15715 1.821332 CATCAAGCCGCCCCTCTTC 60.821 63.158 0.00 0.00 0.00 2.87
5516 15716 3.049080 ATCAAGCCGCCCCTCTTCC 62.049 63.158 0.00 0.00 0.00 3.46
5517 15717 3.721706 CAAGCCGCCCCTCTTCCT 61.722 66.667 0.00 0.00 0.00 3.36
5518 15718 3.403558 AAGCCGCCCCTCTTCCTC 61.404 66.667 0.00 0.00 0.00 3.71
5519 15719 3.933542 AAGCCGCCCCTCTTCCTCT 62.934 63.158 0.00 0.00 0.00 3.69
5520 15720 3.403558 GCCGCCCCTCTTCCTCTT 61.404 66.667 0.00 0.00 0.00 2.85
5521 15721 2.904131 CCGCCCCTCTTCCTCTTC 59.096 66.667 0.00 0.00 0.00 2.87
5522 15722 2.736826 CCGCCCCTCTTCCTCTTCC 61.737 68.421 0.00 0.00 0.00 3.46
5523 15723 2.736826 CGCCCCTCTTCCTCTTCCC 61.737 68.421 0.00 0.00 0.00 3.97
5524 15724 1.616628 GCCCCTCTTCCTCTTCCCA 60.617 63.158 0.00 0.00 0.00 4.37
5525 15725 0.990818 GCCCCTCTTCCTCTTCCCAT 60.991 60.000 0.00 0.00 0.00 4.00
5526 15726 1.135960 CCCCTCTTCCTCTTCCCATC 58.864 60.000 0.00 0.00 0.00 3.51
5527 15727 1.626350 CCCCTCTTCCTCTTCCCATCA 60.626 57.143 0.00 0.00 0.00 3.07
5528 15728 2.200081 CCCTCTTCCTCTTCCCATCAA 58.800 52.381 0.00 0.00 0.00 2.57
5529 15729 2.172293 CCCTCTTCCTCTTCCCATCAAG 59.828 54.545 0.00 0.00 0.00 3.02
5530 15730 2.421248 CCTCTTCCTCTTCCCATCAAGC 60.421 54.545 0.00 0.00 0.00 4.01
5531 15731 2.238144 CTCTTCCTCTTCCCATCAAGCA 59.762 50.000 0.00 0.00 0.00 3.91
5532 15732 2.026822 TCTTCCTCTTCCCATCAAGCAC 60.027 50.000 0.00 0.00 0.00 4.40
5533 15733 1.361204 TCCTCTTCCCATCAAGCACA 58.639 50.000 0.00 0.00 0.00 4.57
5534 15734 1.918262 TCCTCTTCCCATCAAGCACAT 59.082 47.619 0.00 0.00 0.00 3.21
5535 15735 2.022195 CCTCTTCCCATCAAGCACATG 58.978 52.381 0.00 0.00 0.00 3.21
5536 15736 2.619849 CCTCTTCCCATCAAGCACATGT 60.620 50.000 0.00 0.00 0.00 3.21
5537 15737 3.370846 CCTCTTCCCATCAAGCACATGTA 60.371 47.826 0.00 0.00 0.00 2.29
5538 15738 3.609853 TCTTCCCATCAAGCACATGTAC 58.390 45.455 0.00 0.00 0.00 2.90
5539 15739 2.022764 TCCCATCAAGCACATGTACG 57.977 50.000 0.00 0.00 0.00 3.67
5540 15740 1.277842 TCCCATCAAGCACATGTACGT 59.722 47.619 0.00 0.00 0.00 3.57
5541 15741 1.398041 CCCATCAAGCACATGTACGTG 59.602 52.381 13.64 13.64 40.00 4.49
5542 15742 2.076100 CCATCAAGCACATGTACGTGT 58.924 47.619 15.10 15.10 39.19 4.49
5543 15743 2.483877 CCATCAAGCACATGTACGTGTT 59.516 45.455 18.15 2.13 39.19 3.32
5544 15744 3.424829 CCATCAAGCACATGTACGTGTTC 60.425 47.826 18.15 13.66 39.19 3.18
5545 15745 2.827652 TCAAGCACATGTACGTGTTCA 58.172 42.857 18.15 0.00 39.19 3.18
5546 15746 3.198872 TCAAGCACATGTACGTGTTCAA 58.801 40.909 18.15 1.25 39.19 2.69
5547 15747 3.623510 TCAAGCACATGTACGTGTTCAAA 59.376 39.130 18.15 0.91 39.19 2.69
5548 15748 3.878086 AGCACATGTACGTGTTCAAAG 57.122 42.857 18.15 7.94 39.19 2.77
5549 15749 2.548057 AGCACATGTACGTGTTCAAAGG 59.452 45.455 18.15 7.24 39.19 3.11
5550 15750 2.350388 GCACATGTACGTGTTCAAAGGG 60.350 50.000 18.15 6.54 39.19 3.95
5551 15751 1.877443 ACATGTACGTGTTCAAAGGGC 59.123 47.619 15.10 0.00 0.00 5.19
5552 15752 2.151202 CATGTACGTGTTCAAAGGGCT 58.849 47.619 6.93 0.00 0.00 5.19
5553 15753 2.335316 TGTACGTGTTCAAAGGGCTT 57.665 45.000 0.00 0.00 0.00 4.35
5554 15754 1.944024 TGTACGTGTTCAAAGGGCTTG 59.056 47.619 0.00 0.00 36.25 4.01
5555 15755 1.944709 GTACGTGTTCAAAGGGCTTGT 59.055 47.619 0.00 0.00 36.34 3.16
5556 15756 1.021968 ACGTGTTCAAAGGGCTTGTC 58.978 50.000 0.00 0.00 36.34 3.18
5557 15757 1.021202 CGTGTTCAAAGGGCTTGTCA 58.979 50.000 0.00 0.00 36.34 3.58
5558 15758 1.002468 CGTGTTCAAAGGGCTTGTCAG 60.002 52.381 0.00 0.00 36.34 3.51
5559 15759 1.338020 GTGTTCAAAGGGCTTGTCAGG 59.662 52.381 0.00 0.00 36.34 3.86
5560 15760 0.961753 GTTCAAAGGGCTTGTCAGGG 59.038 55.000 0.00 0.00 36.34 4.45
5561 15761 0.827507 TTCAAAGGGCTTGTCAGGGC 60.828 55.000 0.00 0.00 36.34 5.19
5566 15766 2.356278 GGCTTGTCAGGGCCATCA 59.644 61.111 6.18 0.00 46.84 3.07
5567 15767 1.304381 GGCTTGTCAGGGCCATCAA 60.304 57.895 6.18 7.08 46.84 2.57
5568 15768 1.318158 GGCTTGTCAGGGCCATCAAG 61.318 60.000 22.09 22.09 46.84 3.02
5569 15769 1.318158 GCTTGTCAGGGCCATCAAGG 61.318 60.000 25.10 13.98 38.06 3.61
5570 15770 0.329261 CTTGTCAGGGCCATCAAGGA 59.671 55.000 20.05 0.00 41.22 3.36
5584 15784 2.439883 AGGACTACCTCCGCGTCC 60.440 66.667 4.92 3.03 44.13 4.79
5585 15785 3.885521 GGACTACCTCCGCGTCCG 61.886 72.222 4.92 0.00 38.00 4.79
5600 15800 3.300013 CCGGGGTCTCTGGAACTC 58.700 66.667 0.00 0.00 44.90 3.01
5602 15802 3.300013 GGGGTCTCTGGAACTCGG 58.700 66.667 0.00 0.00 0.00 4.63
5603 15803 2.359967 GGGGTCTCTGGAACTCGGG 61.360 68.421 0.00 0.00 0.00 5.14
5604 15804 2.579738 GGTCTCTGGAACTCGGGC 59.420 66.667 0.00 0.00 0.00 6.13
5605 15805 2.283529 GGTCTCTGGAACTCGGGCA 61.284 63.158 0.00 0.00 0.00 5.36
5606 15806 1.617947 GGTCTCTGGAACTCGGGCAT 61.618 60.000 0.00 0.00 0.00 4.40
5607 15807 0.460987 GTCTCTGGAACTCGGGCATG 60.461 60.000 0.00 0.00 0.00 4.06
5608 15808 0.614697 TCTCTGGAACTCGGGCATGA 60.615 55.000 0.00 0.00 0.00 3.07
5609 15809 0.179089 CTCTGGAACTCGGGCATGAG 60.179 60.000 0.00 4.63 41.86 2.90
5610 15810 1.817099 CTGGAACTCGGGCATGAGC 60.817 63.158 0.00 0.00 39.68 4.26
5611 15811 2.892425 GGAACTCGGGCATGAGCG 60.892 66.667 0.00 0.00 43.41 5.03
5612 15812 2.184322 GAACTCGGGCATGAGCGA 59.816 61.111 0.00 0.00 43.41 4.93
5613 15813 1.447838 GAACTCGGGCATGAGCGAA 60.448 57.895 0.00 0.00 43.41 4.70
5614 15814 1.696832 GAACTCGGGCATGAGCGAAC 61.697 60.000 0.00 0.00 43.41 3.95
5615 15815 2.892425 CTCGGGCATGAGCGAACC 60.892 66.667 0.00 0.00 43.41 3.62
5616 15816 4.812476 TCGGGCATGAGCGAACCG 62.812 66.667 0.00 0.00 42.23 4.44
5617 15817 4.812476 CGGGCATGAGCGAACCGA 62.812 66.667 0.00 0.00 43.12 4.69
5618 15818 2.892425 GGGCATGAGCGAACCGAG 60.892 66.667 0.00 0.00 43.41 4.63
5619 15819 2.184322 GGCATGAGCGAACCGAGA 59.816 61.111 0.00 0.00 43.41 4.04
5620 15820 1.880340 GGCATGAGCGAACCGAGAG 60.880 63.158 0.00 0.00 43.41 3.20
5633 15833 3.488048 CGAGAGGCTCATCGGAATC 57.512 57.895 18.26 2.33 35.33 2.52
5634 15834 0.038709 CGAGAGGCTCATCGGAATCC 60.039 60.000 18.26 0.00 35.33 3.01
5635 15835 1.043816 GAGAGGCTCATCGGAATCCA 58.956 55.000 18.26 0.00 0.00 3.41
5636 15836 1.622811 GAGAGGCTCATCGGAATCCAT 59.377 52.381 18.26 0.00 0.00 3.41
5637 15837 1.347050 AGAGGCTCATCGGAATCCATG 59.653 52.381 18.26 2.89 0.00 3.66
5638 15838 0.399454 AGGCTCATCGGAATCCATGG 59.601 55.000 4.97 4.97 0.00 3.66
5639 15839 1.239968 GGCTCATCGGAATCCATGGC 61.240 60.000 6.96 7.97 0.00 4.40
5640 15840 0.535780 GCTCATCGGAATCCATGGCA 60.536 55.000 6.96 0.00 0.00 4.92
5641 15841 1.885359 GCTCATCGGAATCCATGGCAT 60.885 52.381 6.96 0.00 0.00 4.40
5642 15842 1.810755 CTCATCGGAATCCATGGCATG 59.189 52.381 20.56 20.56 0.00 4.06
5643 15843 0.242825 CATCGGAATCCATGGCATGC 59.757 55.000 22.02 9.90 0.00 4.06
5644 15844 0.111832 ATCGGAATCCATGGCATGCT 59.888 50.000 22.02 8.40 0.00 3.79
5645 15845 0.106569 TCGGAATCCATGGCATGCTT 60.107 50.000 22.02 16.25 0.00 3.91
5646 15846 0.031585 CGGAATCCATGGCATGCTTG 59.968 55.000 22.02 15.10 0.00 4.01
5655 15855 2.433664 GCATGCTTGCCAGTTGCC 60.434 61.111 11.37 0.00 43.38 4.52
5656 15856 3.052954 CATGCTTGCCAGTTGCCA 58.947 55.556 0.00 0.00 40.16 4.92
5657 15857 1.080093 CATGCTTGCCAGTTGCCAG 60.080 57.895 0.00 0.00 40.16 4.85
5660 15860 3.688159 CTTGCCAGTTGCCAGCCC 61.688 66.667 0.00 0.00 40.16 5.19
5661 15861 4.536526 TTGCCAGTTGCCAGCCCA 62.537 61.111 0.00 0.00 40.16 5.36
5662 15862 4.536526 TGCCAGTTGCCAGCCCAA 62.537 61.111 0.00 0.00 40.16 4.12
5663 15863 3.233231 GCCAGTTGCCAGCCCAAA 61.233 61.111 0.00 0.00 0.00 3.28
5664 15864 2.586293 GCCAGTTGCCAGCCCAAAT 61.586 57.895 0.00 0.00 0.00 2.32
5665 15865 1.294138 CCAGTTGCCAGCCCAAATG 59.706 57.895 3.66 3.66 39.67 2.32
5666 15866 1.186917 CCAGTTGCCAGCCCAAATGA 61.187 55.000 10.22 0.00 41.76 2.57
5667 15867 0.245539 CAGTTGCCAGCCCAAATGAG 59.754 55.000 4.42 0.00 41.76 2.90
5668 15868 0.112995 AGTTGCCAGCCCAAATGAGA 59.887 50.000 0.00 0.00 0.00 3.27
5669 15869 0.968405 GTTGCCAGCCCAAATGAGAA 59.032 50.000 0.00 0.00 0.00 2.87
5670 15870 1.067354 GTTGCCAGCCCAAATGAGAAG 60.067 52.381 0.00 0.00 0.00 2.85
5671 15871 0.405198 TGCCAGCCCAAATGAGAAGA 59.595 50.000 0.00 0.00 0.00 2.87
5672 15872 1.006281 TGCCAGCCCAAATGAGAAGAT 59.994 47.619 0.00 0.00 0.00 2.40
5673 15873 1.407979 GCCAGCCCAAATGAGAAGATG 59.592 52.381 0.00 0.00 0.00 2.90
5674 15874 2.731572 CCAGCCCAAATGAGAAGATGT 58.268 47.619 0.00 0.00 0.00 3.06
5675 15875 2.426024 CCAGCCCAAATGAGAAGATGTG 59.574 50.000 0.00 0.00 0.00 3.21
5676 15876 2.097825 AGCCCAAATGAGAAGATGTGC 58.902 47.619 0.00 0.00 0.00 4.57
5677 15877 2.097825 GCCCAAATGAGAAGATGTGCT 58.902 47.619 0.00 0.00 0.00 4.40
5678 15878 3.054139 AGCCCAAATGAGAAGATGTGCTA 60.054 43.478 0.00 0.00 0.00 3.49
5679 15879 3.065925 GCCCAAATGAGAAGATGTGCTAC 59.934 47.826 0.00 0.00 0.00 3.58
5680 15880 4.264253 CCCAAATGAGAAGATGTGCTACA 58.736 43.478 0.00 0.00 0.00 2.74
5681 15881 4.885907 CCCAAATGAGAAGATGTGCTACAT 59.114 41.667 2.02 2.02 42.43 2.29
5933 16133 1.074566 CCTTCTCCAAGGGCTTTGTCT 59.925 52.381 8.62 0.00 45.27 3.41
6073 16273 7.552330 GGATCTACTTCGGTTAGTACCTATAGG 59.448 44.444 17.73 17.73 42.66 2.57
6104 16323 4.462483 TCTGGCTGGTTCATTTTTACCATC 59.538 41.667 0.00 0.00 43.15 3.51
6105 16324 4.415596 TGGCTGGTTCATTTTTACCATCT 58.584 39.130 0.00 0.00 43.15 2.90
6109 16331 6.368791 GGCTGGTTCATTTTTACCATCTTTTC 59.631 38.462 0.00 0.00 43.15 2.29
6245 21439 5.717119 AATTGTTCTGTATAAGGGCTCCT 57.283 39.130 0.00 0.00 33.87 3.69
6251 21445 4.155709 TCTGTATAAGGGCTCCTCAGATG 58.844 47.826 6.38 0.00 29.59 2.90
6279 21473 4.153475 GCAAGTTGCGATTTTACTAGACCA 59.847 41.667 12.95 0.00 31.71 4.02
6283 21477 5.638234 AGTTGCGATTTTACTAGACCAGTTC 59.362 40.000 0.00 0.00 38.80 3.01
6296 21490 3.572255 AGACCAGTTCAGTGTCTTCTCTC 59.428 47.826 0.00 0.00 35.93 3.20
6299 21493 4.202202 ACCAGTTCAGTGTCTTCTCTCAAG 60.202 45.833 0.00 0.00 0.00 3.02
6415 21613 1.888512 TGCATTTCAAAGCTCCTCCAC 59.111 47.619 0.00 0.00 0.00 4.02
6447 21645 3.067601 TGCATGATTTGGTGCATGATCTC 59.932 43.478 0.00 0.00 45.60 2.75
6505 24169 3.339547 GCTACCAAAAGCACCCAGA 57.660 52.632 0.00 0.00 42.30 3.86
6507 24171 1.826385 CTACCAAAAGCACCCAGAGG 58.174 55.000 0.00 0.00 40.04 3.69
6522 24186 5.212532 CCCAGAGGTTAGATCTGATGAAG 57.787 47.826 5.18 0.00 45.80 3.02
6528 24192 4.588528 AGGTTAGATCTGATGAAGAGAGCC 59.411 45.833 5.18 0.00 38.67 4.70
6573 24237 7.004086 AGTTAACCAACTTCAAGAATGATCCA 58.996 34.615 0.88 0.00 42.51 3.41
6629 24293 3.739401 CCTCCACTTTAGGGATTTGGT 57.261 47.619 0.00 0.00 33.04 3.67
6735 24399 2.047274 GCTCCAAGTAGCGTGGCA 60.047 61.111 0.00 0.00 35.99 4.92
6753 24417 3.754188 GCACTGCCATCTTCTGTTAAG 57.246 47.619 0.00 0.00 0.00 1.85
6765 24429 7.754027 CCATCTTCTGTTAAGAAATTGAAGCTG 59.246 37.037 0.00 0.00 41.89 4.24
6824 24488 9.739276 AACATCACTTCCTAAGTATTTTCATGA 57.261 29.630 0.00 0.00 40.46 3.07
6849 24513 9.399403 GAACTTCAAAACATGGAAACTCTTATC 57.601 33.333 0.00 0.00 0.00 1.75
6950 24614 3.769844 AGTAGCAGCCTCAGTAAGCTAAA 59.230 43.478 0.00 0.00 39.26 1.85
6981 24645 1.480545 GGGGAGCTCTCTCAACTCTTC 59.519 57.143 14.63 0.00 41.13 2.87
7004 24668 3.918566 TCCTCAATCTATCCGGGTGTTA 58.081 45.455 0.00 0.00 0.00 2.41
7043 24707 4.272991 GCCTGAATCAATCTGTGAGCTTAG 59.727 45.833 0.00 0.00 40.43 2.18
7110 25059 4.410099 AGCTCCCTGAATGTTTTGATCAA 58.590 39.130 3.38 3.38 0.00 2.57
7134 25083 7.856145 ACTCTTCGAGCTTGAATATTTGAAT 57.144 32.000 16.86 0.00 32.04 2.57
7164 25113 4.222145 AGCTGTCCTAAACTCCGACAATTA 59.778 41.667 0.00 0.00 36.16 1.40
7194 25143 5.179368 GTCACTATGCAAGTTGTTCAAGCTA 59.821 40.000 4.48 0.00 35.76 3.32
7199 25148 4.456535 TGCAAGTTGTTCAAGCTAAGGTA 58.543 39.130 4.48 0.00 0.00 3.08
7224 25173 7.946381 TCTCTATTTGTCATACTGTCTGAGT 57.054 36.000 0.00 0.00 38.88 3.41
7288 25237 5.571784 AATACTGCACATGAATGGTCTTG 57.428 39.130 0.00 0.00 35.53 3.02
7299 25248 8.393366 CACATGAATGGTCTTGTACTTATGAAG 58.607 37.037 0.00 0.00 39.46 3.02
7306 25255 5.337652 GGTCTTGTACTTATGAAGGACTGCT 60.338 44.000 3.36 0.00 43.07 4.24
7342 25291 1.746220 ACATGACTAGTCTCACCGAGC 59.254 52.381 23.01 0.00 0.00 5.03
7364 25313 5.887598 AGCTGGTGATTGATAATGCAACTTA 59.112 36.000 0.00 0.00 0.00 2.24
7373 25322 8.597662 ATTGATAATGCAACTTATGATTTGCC 57.402 30.769 9.58 0.00 46.28 4.52
7428 25377 0.250295 TTGTGGGCACAGTAGAGCAC 60.250 55.000 0.00 0.00 42.94 4.40
7430 25379 2.125512 GGGCACAGTAGAGCACCG 60.126 66.667 0.00 0.00 32.55 4.94
7437 25386 1.268899 ACAGTAGAGCACCGTGTACAC 59.731 52.381 16.32 16.32 0.00 2.90
7495 25444 3.882888 TCTTGTGGGATTGACTTGTTCAC 59.117 43.478 0.00 0.00 32.26 3.18
7503 25452 4.379186 GGATTGACTTGTTCACAGCTGATG 60.379 45.833 23.35 14.91 32.26 3.07
7530 25479 2.027377 AGACCTTCAGAATGTCAGGCAG 60.027 50.000 17.83 0.00 40.08 4.85
7531 25480 1.701847 ACCTTCAGAATGTCAGGCAGT 59.298 47.619 0.00 0.00 40.08 4.40
7577 25526 8.337532 CAAACTGCGTGATAAATCAGATATTCA 58.662 33.333 0.00 0.00 37.51 2.57
7612 25561 4.575885 TCACTTCGGAAATAAAGGAGGTG 58.424 43.478 0.00 0.00 37.71 4.00
7620 25569 6.155565 TCGGAAATAAAGGAGGTGAATCTGTA 59.844 38.462 0.00 0.00 0.00 2.74
7625 25574 2.472029 AGGAGGTGAATCTGTACTGGG 58.528 52.381 0.00 0.00 0.00 4.45
7635 25584 2.172483 CTGTACTGGGCAGGCTCGTT 62.172 60.000 0.00 0.00 0.00 3.85
7654 25603 1.840737 TCCTCCTCGGACTCTTGAAG 58.159 55.000 0.00 0.00 36.69 3.02
7683 25632 4.286032 TCGCTAATTGGGTATAGGAGCAAT 59.714 41.667 0.00 0.00 0.00 3.56
7705 25654 4.081406 TGAATTCCCTGACTGGATGTTTG 58.919 43.478 2.27 0.00 38.35 2.93
7722 25671 3.056821 TGTTTGACATCTCGTCCTACCTG 60.057 47.826 0.00 0.00 44.71 4.00
7813 25762 5.869649 ACCAAATTTAAGAAGGCTGTGTT 57.130 34.783 0.00 0.00 0.00 3.32
7851 25800 7.363793 CCCAACATTAGGAAAATTGGTAAGGAG 60.364 40.741 0.00 0.00 38.53 3.69
7888 25837 6.235664 GGTGGACCTTGTATGAAACTAAGAA 58.764 40.000 0.00 0.00 0.00 2.52
7911 25860 3.937814 ACTGCTATTGACGTTGATGGAA 58.062 40.909 0.00 0.00 0.00 3.53
7953 25902 5.245531 ACAACAGAGTCAAGTGAAGAAACA 58.754 37.500 0.00 0.00 0.00 2.83
7958 25907 6.127897 ACAGAGTCAAGTGAAGAAACAAAAGG 60.128 38.462 0.00 0.00 0.00 3.11
8006 25955 2.239654 TGGAGATAAAGGACTGCCCAAG 59.760 50.000 0.00 0.00 37.41 3.61
8109 26058 2.093973 TGGAAAGCTCTCGTCTTCCATC 60.094 50.000 10.59 0.00 0.00 3.51
8119 26068 1.204941 CGTCTTCCATCCGTCCTTCTT 59.795 52.381 0.00 0.00 0.00 2.52
8120 26069 2.353803 CGTCTTCCATCCGTCCTTCTTT 60.354 50.000 0.00 0.00 0.00 2.52
8204 26153 5.716703 CCACCCTTGAGAAATTTCAGGTAAT 59.283 40.000 19.99 0.00 27.99 1.89
8208 26157 6.037610 CCCTTGAGAAATTTCAGGTAATCTCG 59.962 42.308 19.99 1.05 36.87 4.04
8210 26159 4.876107 TGAGAAATTTCAGGTAATCTCGGC 59.124 41.667 19.99 0.00 36.87 5.54
8217 26166 0.325296 AGGTAATCTCGGCCAGTGGA 60.325 55.000 15.20 0.00 0.00 4.02
8234 26183 1.425066 TGGATTGAGGACTTTGCCAGT 59.575 47.619 0.00 0.00 39.07 4.00
8245 26194 1.236616 TTTGCCAGTGGTCATGCGAG 61.237 55.000 11.74 0.00 0.00 5.03
8275 26224 7.615757 TCACCTCTCTCACTGAACTATATTTGA 59.384 37.037 0.00 0.00 0.00 2.69
8276 26225 8.253810 CACCTCTCTCACTGAACTATATTTGAA 58.746 37.037 0.00 0.00 0.00 2.69
8296 26245 5.065914 TGAAGTCATTGAAGTTCTTGGAGG 58.934 41.667 4.17 0.00 31.19 4.30
8313 26262 1.153229 GGCACTCCCGGTATGGTTC 60.153 63.158 0.00 0.00 35.15 3.62
8317 26266 1.143183 CTCCCGGTATGGTTCGGTG 59.857 63.158 0.00 0.00 44.32 4.94
8324 26273 0.804933 GTATGGTTCGGTGACCTCGC 60.805 60.000 0.00 0.00 40.47 5.03
8333 26282 1.465794 GGTGACCTCGCTTCTCTAGT 58.534 55.000 0.00 0.00 0.00 2.57
8334 26283 1.819903 GGTGACCTCGCTTCTCTAGTT 59.180 52.381 0.00 0.00 0.00 2.24
8341 26290 5.552178 ACCTCGCTTCTCTAGTTGAAATTT 58.448 37.500 0.00 0.00 0.00 1.82
8342 26291 5.639931 ACCTCGCTTCTCTAGTTGAAATTTC 59.360 40.000 11.41 11.41 0.00 2.17
8369 26318 0.819582 GATTGCCCCAACCTGACATG 59.180 55.000 0.00 0.00 0.00 3.21
8396 26345 3.190118 CCTGAAAGCATGAAGAACCTCAC 59.810 47.826 0.00 0.00 0.00 3.51
8397 26346 4.070716 CTGAAAGCATGAAGAACCTCACT 58.929 43.478 0.00 0.00 0.00 3.41
8398 26347 3.817084 TGAAAGCATGAAGAACCTCACTG 59.183 43.478 0.00 0.00 0.00 3.66
8403 26352 3.368843 GCATGAAGAACCTCACTGCTCTA 60.369 47.826 0.00 0.00 32.13 2.43
8406 26355 4.152647 TGAAGAACCTCACTGCTCTAAGA 58.847 43.478 0.00 0.00 0.00 2.10
8409 26358 5.552870 AGAACCTCACTGCTCTAAGAAAA 57.447 39.130 0.00 0.00 0.00 2.29
8410 26359 6.120507 AGAACCTCACTGCTCTAAGAAAAT 57.879 37.500 0.00 0.00 0.00 1.82
8414 26363 5.703130 ACCTCACTGCTCTAAGAAAATTGAC 59.297 40.000 0.00 0.00 0.00 3.18
8415 26364 5.163913 CCTCACTGCTCTAAGAAAATTGACG 60.164 44.000 0.00 0.00 0.00 4.35
8419 26368 5.758296 ACTGCTCTAAGAAAATTGACGTTGA 59.242 36.000 0.00 0.00 0.00 3.18
8428 26377 5.700832 AGAAAATTGACGTTGATAGAGTGCA 59.299 36.000 0.00 0.00 0.00 4.57
8453 26402 2.949826 TGGAAACATTACCGGCACC 58.050 52.632 0.00 0.00 33.40 5.01
8463 26412 4.715523 CCGGCACCGTTGGGACAT 62.716 66.667 8.49 0.00 35.47 3.06
8465 26414 2.686816 CGGCACCGTTGGGACATTC 61.687 63.158 0.00 0.00 39.30 2.67
8466 26415 1.602323 GGCACCGTTGGGACATTCA 60.602 57.895 0.00 0.00 39.30 2.57
8511 26460 1.514678 GCGATTGCCACAACCTGACA 61.515 55.000 0.00 0.00 33.98 3.58
8513 26462 1.131126 CGATTGCCACAACCTGACATC 59.869 52.381 0.00 0.00 0.00 3.06
8539 26488 3.683802 CCTGAAAGCATGAAGAACCTCT 58.316 45.455 0.00 0.00 0.00 3.69
8541 26490 3.679389 TGAAAGCATGAAGAACCTCTCC 58.321 45.455 0.00 0.00 0.00 3.71
8544 26493 0.107945 GCATGAAGAACCTCTCCGCT 60.108 55.000 0.00 0.00 0.00 5.52
8549 26498 3.162666 TGAAGAACCTCTCCGCTCTTAA 58.837 45.455 0.00 0.00 0.00 1.85
8553 26502 4.316645 AGAACCTCTCCGCTCTTAAAAAC 58.683 43.478 0.00 0.00 0.00 2.43
8558 26507 3.660865 TCTCCGCTCTTAAAAACCTGAC 58.339 45.455 0.00 0.00 0.00 3.51
8564 26513 4.084013 CGCTCTTAAAAACCTGACGTTGAT 60.084 41.667 0.00 0.00 33.93 2.57
8566 26515 6.347079 CGCTCTTAAAAACCTGACGTTGATAA 60.347 38.462 0.00 0.00 33.93 1.75
8575 26524 4.518970 ACCTGACGTTGATAAAGTGCAAAT 59.481 37.500 0.00 0.00 0.00 2.32
8577 26526 4.225984 TGACGTTGATAAAGTGCAAATGC 58.774 39.130 0.00 0.00 42.50 3.56
8578 26527 3.574614 ACGTTGATAAAGTGCAAATGCC 58.425 40.909 2.46 0.00 41.18 4.40
8607 26556 0.616371 TACCGGGATTGTTGGGACAG 59.384 55.000 6.32 0.00 42.39 3.51
8617 26566 3.644966 TGTTGGGACAGTTGACTTCTT 57.355 42.857 0.00 0.00 42.39 2.52
8621 26570 5.104693 TGTTGGGACAGTTGACTTCTTTAGA 60.105 40.000 0.00 0.00 42.39 2.10
8622 26571 5.623956 TGGGACAGTTGACTTCTTTAGAA 57.376 39.130 0.00 0.00 0.00 2.10
8655 26604 1.002134 CGATTGCCCCAACCTGACT 60.002 57.895 0.00 0.00 0.00 3.41
8673 26622 3.638160 TGACTTCTTTGCCTGAAAGCATT 59.362 39.130 0.00 0.00 43.64 3.56
8684 26633 4.400567 GCCTGAAAGCATTAAGAACCTCAT 59.599 41.667 0.00 0.00 0.00 2.90
8695 26644 7.625553 CATTAAGAACCTCATCGCTCTTAAAG 58.374 38.462 7.09 0.79 41.34 1.85
8696 26645 4.810191 AGAACCTCATCGCTCTTAAAGT 57.190 40.909 0.00 0.00 0.00 2.66
8722 26671 0.312102 GTTGACAGAGTGCAAAGGCC 59.688 55.000 0.00 0.00 40.13 5.19
8733 26682 1.070445 TGCAAAGGCCTGGAAACATTG 59.930 47.619 5.69 6.34 40.13 2.82
9336 28517 7.448748 AATTATAATCAGCGATTACCCCAAC 57.551 36.000 11.43 0.00 37.34 3.77
9349 28530 3.312736 ACCCCAACTTGACATCTTTGT 57.687 42.857 0.00 0.00 39.32 2.83
9441 28624 1.710244 TGGATGGTTGGGACAGTTGAT 59.290 47.619 0.00 0.00 42.39 2.57
9595 28778 3.389329 AGGATGCCTACAAGATTCGTCAT 59.611 43.478 0.00 0.00 28.47 3.06
9673 28856 7.801547 ATGCTTACAAAATTGTCGAATTCTG 57.198 32.000 1.37 0.00 42.35 3.02
9684 28867 5.702622 TGTCGAATTCTGATTGATTCGTC 57.297 39.130 17.53 14.15 44.15 4.20
9685 28868 5.167845 TGTCGAATTCTGATTGATTCGTCA 58.832 37.500 17.53 15.91 44.15 4.35
9686 28869 5.062183 TGTCGAATTCTGATTGATTCGTCAC 59.938 40.000 17.53 12.23 44.15 3.67
9687 28870 4.566759 TCGAATTCTGATTGATTCGTCACC 59.433 41.667 17.53 0.00 44.15 4.02
9688 28871 4.260375 CGAATTCTGATTGATTCGTCACCC 60.260 45.833 12.48 0.00 40.42 4.61
9689 28872 3.694043 TTCTGATTGATTCGTCACCCA 57.306 42.857 0.00 0.00 0.00 4.51
9690 28873 3.251479 TCTGATTGATTCGTCACCCAG 57.749 47.619 0.00 0.00 0.00 4.45
9691 28874 1.667724 CTGATTGATTCGTCACCCAGC 59.332 52.381 0.00 0.00 0.00 4.85
9710 28893 0.967380 CCACCTGTCCCATCTTTGCC 60.967 60.000 0.00 0.00 0.00 4.52
9721 28904 1.281925 ATCTTTGCCTCCCGGTGGAT 61.282 55.000 14.12 0.00 40.80 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 148 5.386729 GCAGTACTCGTACGTTGTTTTGTAG 60.387 44.000 16.05 4.21 40.80 2.74
148 150 3.243643 GCAGTACTCGTACGTTGTTTTGT 59.756 43.478 16.05 6.67 40.80 2.83
149 151 3.362304 GGCAGTACTCGTACGTTGTTTTG 60.362 47.826 16.05 15.61 40.80 2.44
150 152 2.796593 GGCAGTACTCGTACGTTGTTTT 59.203 45.455 16.05 5.05 40.80 2.43
256 263 1.949525 CCCATGCTTTCACCTAATCGG 59.050 52.381 0.00 0.00 39.35 4.18
269 276 6.900194 AGTACTGTATTCATAAACCCATGCT 58.100 36.000 0.00 0.00 0.00 3.79
295 302 5.298527 AGTTTAAACCTTGAGGCACAACTAC 59.701 40.000 14.72 0.00 39.32 2.73
315 322 2.969821 TGTGATTAGGGGCACAGTTT 57.030 45.000 0.00 0.00 39.86 2.66
320 327 3.953612 TGAATCAATGTGATTAGGGGCAC 59.046 43.478 3.53 0.00 46.20 5.01
360 367 0.399454 ACTGACAGCCTTCACATGCT 59.601 50.000 1.25 0.00 38.67 3.79
437 558 9.696917 GTGGAGAGTTCATCAATTTGTTTATTT 57.303 29.630 0.00 0.00 0.00 1.40
439 560 8.641498 AGTGGAGAGTTCATCAATTTGTTTAT 57.359 30.769 0.00 0.00 0.00 1.40
440 561 8.463930 AAGTGGAGAGTTCATCAATTTGTTTA 57.536 30.769 0.00 0.00 0.00 2.01
444 565 9.918630 ATAAAAAGTGGAGAGTTCATCAATTTG 57.081 29.630 0.00 0.00 29.76 2.32
480 601 2.685897 GCTTTTCATTGGGTATACCGCA 59.314 45.455 15.80 11.76 44.64 5.69
482 603 3.564225 GGAGCTTTTCATTGGGTATACCG 59.436 47.826 15.80 2.03 44.64 4.02
498 619 0.687354 ACACGTGAATCCTGGAGCTT 59.313 50.000 25.01 0.00 0.00 3.74
499 620 0.036952 CACACGTGAATCCTGGAGCT 60.037 55.000 25.01 0.00 0.00 4.09
583 704 6.118170 TGGCTCTTGGAATCTTGAATCTTAG 58.882 40.000 0.00 0.00 0.00 2.18
626 749 9.799106 ACATTAATTAGGTTATCCTGATCCAAG 57.201 33.333 2.34 0.00 44.81 3.61
647 770 5.127031 TCGATCTGATGTCCTCAACACATTA 59.873 40.000 0.00 0.00 41.75 1.90
648 771 4.081476 TCGATCTGATGTCCTCAACACATT 60.081 41.667 0.00 0.00 41.75 2.71
649 772 3.448660 TCGATCTGATGTCCTCAACACAT 59.551 43.478 0.00 0.00 41.75 3.21
650 773 2.825532 TCGATCTGATGTCCTCAACACA 59.174 45.455 0.00 0.00 41.75 3.72
653 776 3.443037 CACTCGATCTGATGTCCTCAAC 58.557 50.000 0.00 0.00 32.14 3.18
656 779 2.293122 CTCCACTCGATCTGATGTCCTC 59.707 54.545 0.00 0.00 0.00 3.71
667 790 1.126488 ATGACCATGCTCCACTCGAT 58.874 50.000 0.00 0.00 0.00 3.59
669 792 1.667724 GAAATGACCATGCTCCACTCG 59.332 52.381 0.00 0.00 0.00 4.18
670 793 2.996631 AGAAATGACCATGCTCCACTC 58.003 47.619 0.00 0.00 0.00 3.51
712 858 1.616374 CATTTTTACGGGGTTGTGGCT 59.384 47.619 0.00 0.00 0.00 4.75
742 948 1.674764 TTGGGCTTGGTTGTGTGCAG 61.675 55.000 0.00 0.00 0.00 4.41
753 959 2.736531 GTGGGTGCTTTGGGCTTG 59.263 61.111 0.00 0.00 42.39 4.01
754 960 2.524148 GGTGGGTGCTTTGGGCTT 60.524 61.111 0.00 0.00 42.39 4.35
755 961 4.974721 CGGTGGGTGCTTTGGGCT 62.975 66.667 0.00 0.00 42.39 5.19
757 963 1.830408 TTTCGGTGGGTGCTTTGGG 60.830 57.895 0.00 0.00 0.00 4.12
758 964 1.362355 GTTTCGGTGGGTGCTTTGG 59.638 57.895 0.00 0.00 0.00 3.28
759 965 1.106944 AGGTTTCGGTGGGTGCTTTG 61.107 55.000 0.00 0.00 0.00 2.77
760 966 0.475044 TAGGTTTCGGTGGGTGCTTT 59.525 50.000 0.00 0.00 0.00 3.51
763 2036 0.250597 AACTAGGTTTCGGTGGGTGC 60.251 55.000 0.00 0.00 0.00 5.01
765 2038 2.556144 GAAACTAGGTTTCGGTGGGT 57.444 50.000 0.00 0.00 41.59 4.51
1343 2770 1.078848 GCGTGGAGAGCTTGATGGT 60.079 57.895 0.00 0.00 0.00 3.55
1541 3043 1.660575 GCAACAGCAACAGCAGCAG 60.661 57.895 0.00 0.00 0.00 4.24
1544 3046 2.050714 CGGCAACAGCAACAGCAG 60.051 61.111 0.00 0.00 0.00 4.24
1547 3049 4.688419 CGCCGGCAACAGCAACAG 62.688 66.667 28.98 0.98 41.23 3.16
1550 3055 4.263209 CAACGCCGGCAACAGCAA 62.263 61.111 28.98 0.00 41.23 3.91
1596 3107 1.507140 TGGAGTTGGAGTTGGTGAGT 58.493 50.000 0.00 0.00 0.00 3.41
1601 3112 2.498167 CAGAGTTGGAGTTGGAGTTGG 58.502 52.381 0.00 0.00 0.00 3.77
1602 3113 1.876156 GCAGAGTTGGAGTTGGAGTTG 59.124 52.381 0.00 0.00 0.00 3.16
1603 3114 1.771255 AGCAGAGTTGGAGTTGGAGTT 59.229 47.619 0.00 0.00 0.00 3.01
1604 3115 1.428869 AGCAGAGTTGGAGTTGGAGT 58.571 50.000 0.00 0.00 0.00 3.85
1605 3116 2.564947 ACTAGCAGAGTTGGAGTTGGAG 59.435 50.000 0.00 0.00 33.13 3.86
1644 3173 0.461339 ACACTCTGTCAAAACGCGGT 60.461 50.000 12.47 0.00 0.00 5.68
1646 3175 1.326245 TGAACACTCTGTCAAAACGCG 59.674 47.619 3.53 3.53 0.00 6.01
1735 3264 0.035152 CTGCTGGTTGGGATAGTGCA 60.035 55.000 0.00 0.00 0.00 4.57
2319 3917 4.189639 GTCATTAGACTCCAAACCTCGT 57.810 45.455 0.00 0.00 41.64 4.18
2513 4114 4.276926 ACTGATGCTTTTCAAGAACTCCAC 59.723 41.667 0.00 0.00 0.00 4.02
2654 4258 9.831737 AATGATTGATTTCTGAAGAAGTAAACG 57.168 29.630 0.00 0.00 35.21 3.60
2791 4398 7.751732 TCCTTCTTTTGTTTGTATCGATCATG 58.248 34.615 0.00 0.00 0.00 3.07
2792 4399 7.921786 TCCTTCTTTTGTTTGTATCGATCAT 57.078 32.000 0.00 0.00 0.00 2.45
2899 4527 5.523188 GGACAACATCAGCTCTGAAATCTAG 59.477 44.000 3.47 0.00 43.58 2.43
2926 4554 9.088512 GTTGATAGATAAGTGTCGAACAGATTT 57.911 33.333 0.00 0.00 0.00 2.17
3125 4756 1.159713 TTGCGCAGACTTCACCACTG 61.160 55.000 11.31 0.00 35.14 3.66
3141 4772 8.770438 TTGAAAACCTATATGGAAAACATTGC 57.230 30.769 0.00 0.00 41.03 3.56
3146 4777 9.974980 TCAGTTTTGAAAACCTATATGGAAAAC 57.025 29.630 16.45 0.00 37.58 2.43
3208 4839 2.253610 ACTCATTTCCCCGTCACTGTA 58.746 47.619 0.00 0.00 0.00 2.74
3210 4841 2.185004 AACTCATTTCCCCGTCACTG 57.815 50.000 0.00 0.00 0.00 3.66
3308 4939 3.685139 TCTCAAGGTGGCTAAAGTCTG 57.315 47.619 0.00 0.00 0.00 3.51
3360 4991 2.539688 GACATCGCGAATATTGCAGTGA 59.460 45.455 15.24 0.00 0.00 3.41
3365 4996 1.125021 CTCCGACATCGCGAATATTGC 59.875 52.381 15.24 2.43 38.18 3.56
3376 5007 2.879002 TGCTTCATCTCTCCGACATC 57.121 50.000 0.00 0.00 0.00 3.06
3385 5016 2.485903 CTCCTGCAGATGCTTCATCTC 58.514 52.381 17.39 3.69 46.83 2.75
3482 5113 2.957006 AGACCACGTACAGTCAGTTCTT 59.043 45.455 13.18 0.00 35.38 2.52
3485 5116 2.691526 TCAAGACCACGTACAGTCAGTT 59.308 45.455 13.18 0.17 35.38 3.16
3549 5180 8.873144 TCCAATTTCTTCAGATTCCTTTTCAAT 58.127 29.630 0.00 0.00 0.00 2.57
3568 5199 4.706962 GCCTGACCAGAGTAATTCCAATTT 59.293 41.667 0.00 0.00 0.00 1.82
3570 5201 3.372025 GGCCTGACCAGAGTAATTCCAAT 60.372 47.826 0.00 0.00 38.86 3.16
3592 5223 0.824109 TCTGTAGTTGGGCCATCTCG 59.176 55.000 20.07 10.46 0.00 4.04
3600 5231 3.845781 ATACCAGCATCTGTAGTTGGG 57.154 47.619 0.00 0.00 33.20 4.12
4017 5726 2.144362 GCGCAAATTGGTGCAAGAC 58.856 52.632 13.61 0.00 45.19 3.01
4103 5812 6.037610 GGAATCACATCTTCCTACATCACAAC 59.962 42.308 0.00 0.00 39.30 3.32
4106 5815 4.747108 CGGAATCACATCTTCCTACATCAC 59.253 45.833 1.05 0.00 40.07 3.06
4107 5816 4.649218 TCGGAATCACATCTTCCTACATCA 59.351 41.667 1.05 0.00 40.07 3.07
4113 5822 3.264450 ACCTTTCGGAATCACATCTTCCT 59.736 43.478 0.00 0.00 40.07 3.36
4128 5879 2.675844 TCCATCATAACGCAACCTTTCG 59.324 45.455 0.00 0.00 0.00 3.46
4160 5920 2.799917 GCACCGCCATACTCTCTAACAG 60.800 54.545 0.00 0.00 0.00 3.16
4182 5942 0.967380 CCAGATTGTGGGAGGCCAAC 60.967 60.000 5.01 0.00 43.63 3.77
4505 10196 1.680249 GGAGCAATGAGTTGTCCTCCC 60.680 57.143 0.00 0.00 39.65 4.30
4564 10255 2.364186 CTTTCCCATGGGCCACCC 60.364 66.667 27.41 0.00 45.71 4.61
4883 15060 1.845266 CAATCCAGAGATGTCGTCCG 58.155 55.000 0.00 0.00 31.29 4.79
4887 15064 2.625737 ACAAGCAATCCAGAGATGTCG 58.374 47.619 0.00 0.00 31.29 4.35
4967 15144 6.868622 TCAGAACCAAATCCTTTTCGAAAAA 58.131 32.000 22.67 10.76 0.00 1.94
4968 15145 6.458232 TCAGAACCAAATCCTTTTCGAAAA 57.542 33.333 21.35 21.35 0.00 2.29
4969 15146 6.446318 CATCAGAACCAAATCCTTTTCGAAA 58.554 36.000 6.47 6.47 0.00 3.46
4970 15147 5.048083 CCATCAGAACCAAATCCTTTTCGAA 60.048 40.000 0.00 0.00 0.00 3.71
4971 15148 4.458989 CCATCAGAACCAAATCCTTTTCGA 59.541 41.667 0.00 0.00 0.00 3.71
4972 15149 4.380867 CCCATCAGAACCAAATCCTTTTCG 60.381 45.833 0.00 0.00 0.00 3.46
4973 15150 4.772100 TCCCATCAGAACCAAATCCTTTTC 59.228 41.667 0.00 0.00 0.00 2.29
4974 15151 4.750941 TCCCATCAGAACCAAATCCTTTT 58.249 39.130 0.00 0.00 0.00 2.27
4975 15152 4.347607 CTCCCATCAGAACCAAATCCTTT 58.652 43.478 0.00 0.00 0.00 3.11
4976 15153 3.309410 CCTCCCATCAGAACCAAATCCTT 60.309 47.826 0.00 0.00 0.00 3.36
4977 15154 2.243221 CCTCCCATCAGAACCAAATCCT 59.757 50.000 0.00 0.00 0.00 3.24
4978 15155 2.242196 TCCTCCCATCAGAACCAAATCC 59.758 50.000 0.00 0.00 0.00 3.01
4979 15156 3.652057 TCCTCCCATCAGAACCAAATC 57.348 47.619 0.00 0.00 0.00 2.17
4980 15157 3.373438 CCATCCTCCCATCAGAACCAAAT 60.373 47.826 0.00 0.00 0.00 2.32
4981 15158 2.025037 CCATCCTCCCATCAGAACCAAA 60.025 50.000 0.00 0.00 0.00 3.28
4982 15159 1.565759 CCATCCTCCCATCAGAACCAA 59.434 52.381 0.00 0.00 0.00 3.67
4983 15160 1.216064 CCATCCTCCCATCAGAACCA 58.784 55.000 0.00 0.00 0.00 3.67
4984 15161 1.511613 TCCATCCTCCCATCAGAACC 58.488 55.000 0.00 0.00 0.00 3.62
5005 15185 0.392706 TCTTGCTCTTCCGTGAAGCA 59.607 50.000 8.32 2.57 39.29 3.91
5184 15365 9.250624 GTCATATATAGTTTTCTCAGCGAAACT 57.749 33.333 9.91 9.91 41.13 2.66
5210 15391 2.341807 TATCTCAGCGCTGCGACCAG 62.342 60.000 30.60 22.35 42.13 4.00
5323 15515 9.483062 CGTTTCATCAGAAATAGAGAAACAATC 57.517 33.333 13.93 0.00 44.87 2.67
5331 15523 7.602517 AAACCTCGTTTCATCAGAAATAGAG 57.397 36.000 14.09 14.09 44.87 2.43
5367 15562 8.439971 TGGTTAAGATGAGGCAGAAATATACAT 58.560 33.333 0.00 0.00 0.00 2.29
5369 15564 7.934120 AGTGGTTAAGATGAGGCAGAAATATAC 59.066 37.037 0.00 0.00 0.00 1.47
5420 15620 1.071471 CAACAGGGAGAGCAACCGT 59.929 57.895 0.00 0.00 0.00 4.83
5422 15622 1.973812 GCCAACAGGGAGAGCAACC 60.974 63.158 0.00 0.00 40.01 3.77
5423 15623 2.328099 CGCCAACAGGGAGAGCAAC 61.328 63.158 0.00 0.00 39.08 4.17
5424 15624 2.032528 CGCCAACAGGGAGAGCAA 59.967 61.111 0.00 0.00 39.08 3.91
5425 15625 4.020617 CCGCCAACAGGGAGAGCA 62.021 66.667 0.00 0.00 39.08 4.26
5426 15626 3.553095 AACCGCCAACAGGGAGAGC 62.553 63.158 0.00 0.00 39.08 4.09
5427 15627 1.672356 CAACCGCCAACAGGGAGAG 60.672 63.158 0.00 0.00 39.08 3.20
5428 15628 2.429930 CAACCGCCAACAGGGAGA 59.570 61.111 0.00 0.00 39.08 3.71
5429 15629 3.365265 GCAACCGCCAACAGGGAG 61.365 66.667 0.00 0.00 40.01 4.30
5441 15641 2.693250 GCCGTGAAAAGGTGGCAACC 62.693 60.000 0.26 0.26 46.76 3.77
5442 15642 1.299850 GCCGTGAAAAGGTGGCAAC 60.300 57.895 0.00 0.00 46.76 4.17
5443 15643 3.124686 GCCGTGAAAAGGTGGCAA 58.875 55.556 0.00 0.00 46.76 4.52
5445 15645 2.597510 AGGCCGTGAAAAGGTGGC 60.598 61.111 0.00 0.00 46.82 5.01
5446 15646 0.821711 TTGAGGCCGTGAAAAGGTGG 60.822 55.000 0.00 0.00 37.98 4.61
5447 15647 1.200020 GATTGAGGCCGTGAAAAGGTG 59.800 52.381 0.00 0.00 37.98 4.00
5448 15648 1.202879 TGATTGAGGCCGTGAAAAGGT 60.203 47.619 0.00 0.00 37.98 3.50
5449 15649 1.533625 TGATTGAGGCCGTGAAAAGG 58.466 50.000 0.00 0.00 39.09 3.11
5450 15650 2.733227 GCATGATTGAGGCCGTGAAAAG 60.733 50.000 0.00 0.00 0.00 2.27
5451 15651 1.202114 GCATGATTGAGGCCGTGAAAA 59.798 47.619 0.00 0.00 0.00 2.29
5452 15652 0.810648 GCATGATTGAGGCCGTGAAA 59.189 50.000 0.00 0.00 0.00 2.69
5453 15653 0.035152 AGCATGATTGAGGCCGTGAA 60.035 50.000 0.00 0.00 28.84 3.18
5454 15654 0.745486 CAGCATGATTGAGGCCGTGA 60.745 55.000 0.00 0.00 39.69 4.35
5455 15655 1.721664 CCAGCATGATTGAGGCCGTG 61.722 60.000 0.00 0.00 39.69 4.94
5456 15656 1.452651 CCAGCATGATTGAGGCCGT 60.453 57.895 0.00 0.00 39.69 5.68
5457 15657 1.452651 ACCAGCATGATTGAGGCCG 60.453 57.895 0.00 0.00 39.69 6.13
5458 15658 0.394762 TCACCAGCATGATTGAGGCC 60.395 55.000 0.00 0.00 39.69 5.19
5459 15659 1.404391 CTTCACCAGCATGATTGAGGC 59.596 52.381 0.00 0.00 39.69 4.70
5460 15660 2.681848 GTCTTCACCAGCATGATTGAGG 59.318 50.000 0.00 0.00 39.69 3.86
5461 15661 3.126514 GTGTCTTCACCAGCATGATTGAG 59.873 47.826 0.00 0.00 38.51 3.02
5462 15662 3.076621 GTGTCTTCACCAGCATGATTGA 58.923 45.455 0.00 0.00 38.51 2.57
5463 15663 3.079578 AGTGTCTTCACCAGCATGATTG 58.920 45.455 0.00 0.00 44.83 2.67
5464 15664 3.079578 CAGTGTCTTCACCAGCATGATT 58.920 45.455 0.00 0.00 44.83 2.57
5465 15665 2.303890 TCAGTGTCTTCACCAGCATGAT 59.696 45.455 0.00 0.00 44.83 2.45
5466 15666 1.693606 TCAGTGTCTTCACCAGCATGA 59.306 47.619 0.00 0.00 44.83 3.07
5467 15667 2.174363 TCAGTGTCTTCACCAGCATG 57.826 50.000 0.00 0.00 44.83 4.06
5468 15668 2.570752 AGATCAGTGTCTTCACCAGCAT 59.429 45.455 0.00 0.00 44.83 3.79
5469 15669 1.973515 AGATCAGTGTCTTCACCAGCA 59.026 47.619 0.00 0.00 44.83 4.41
5470 15670 2.615869 GAGATCAGTGTCTTCACCAGC 58.384 52.381 0.00 0.00 44.83 4.85
5471 15671 2.830923 AGGAGATCAGTGTCTTCACCAG 59.169 50.000 0.00 0.00 44.83 4.00
5472 15672 2.828520 GAGGAGATCAGTGTCTTCACCA 59.171 50.000 0.00 0.00 44.83 4.17
5473 15673 2.167487 GGAGGAGATCAGTGTCTTCACC 59.833 54.545 0.00 3.79 44.83 4.02
5474 15674 3.096092 AGGAGGAGATCAGTGTCTTCAC 58.904 50.000 0.00 0.00 44.15 3.18
5475 15675 3.360867 GAGGAGGAGATCAGTGTCTTCA 58.639 50.000 0.00 0.00 0.00 3.02
5476 15676 2.693074 GGAGGAGGAGATCAGTGTCTTC 59.307 54.545 0.00 0.00 0.00 2.87
5477 15677 2.043664 TGGAGGAGGAGATCAGTGTCTT 59.956 50.000 0.00 0.00 0.00 3.01
5478 15678 1.643286 TGGAGGAGGAGATCAGTGTCT 59.357 52.381 0.00 0.00 0.00 3.41
5479 15679 2.151502 TGGAGGAGGAGATCAGTGTC 57.848 55.000 0.00 0.00 0.00 3.67
5480 15680 2.023598 TGATGGAGGAGGAGATCAGTGT 60.024 50.000 0.00 0.00 0.00 3.55
5481 15681 2.675583 TGATGGAGGAGGAGATCAGTG 58.324 52.381 0.00 0.00 0.00 3.66
5482 15682 3.307506 CTTGATGGAGGAGGAGATCAGT 58.692 50.000 0.00 0.00 0.00 3.41
5483 15683 2.037511 GCTTGATGGAGGAGGAGATCAG 59.962 54.545 0.00 0.00 0.00 2.90
5484 15684 2.045524 GCTTGATGGAGGAGGAGATCA 58.954 52.381 0.00 0.00 0.00 2.92
5485 15685 1.347378 GGCTTGATGGAGGAGGAGATC 59.653 57.143 0.00 0.00 0.00 2.75
5486 15686 1.433121 GGCTTGATGGAGGAGGAGAT 58.567 55.000 0.00 0.00 0.00 2.75
5487 15687 1.045350 CGGCTTGATGGAGGAGGAGA 61.045 60.000 0.00 0.00 0.00 3.71
5488 15688 1.445095 CGGCTTGATGGAGGAGGAG 59.555 63.158 0.00 0.00 0.00 3.69
5489 15689 2.735772 GCGGCTTGATGGAGGAGGA 61.736 63.158 0.00 0.00 0.00 3.71
5490 15690 2.203126 GCGGCTTGATGGAGGAGG 60.203 66.667 0.00 0.00 0.00 4.30
5491 15691 2.203126 GGCGGCTTGATGGAGGAG 60.203 66.667 0.00 0.00 0.00 3.69
5492 15692 3.797353 GGGCGGCTTGATGGAGGA 61.797 66.667 9.56 0.00 0.00 3.71
5493 15693 4.883354 GGGGCGGCTTGATGGAGG 62.883 72.222 9.56 0.00 0.00 4.30
5494 15694 3.764160 GAGGGGCGGCTTGATGGAG 62.764 68.421 9.56 0.00 0.00 3.86
5495 15695 3.797353 GAGGGGCGGCTTGATGGA 61.797 66.667 9.56 0.00 0.00 3.41
5496 15696 3.350031 AAGAGGGGCGGCTTGATGG 62.350 63.158 9.56 0.00 0.00 3.51
5497 15697 1.821332 GAAGAGGGGCGGCTTGATG 60.821 63.158 9.56 0.00 0.00 3.07
5498 15698 2.592308 GAAGAGGGGCGGCTTGAT 59.408 61.111 9.56 0.00 0.00 2.57
5499 15699 3.717294 GGAAGAGGGGCGGCTTGA 61.717 66.667 9.56 0.00 0.00 3.02
5500 15700 3.689002 GAGGAAGAGGGGCGGCTTG 62.689 68.421 9.56 0.00 0.00 4.01
5501 15701 3.403558 GAGGAAGAGGGGCGGCTT 61.404 66.667 9.56 0.00 0.00 4.35
5502 15702 3.933542 AAGAGGAAGAGGGGCGGCT 62.934 63.158 9.56 0.00 0.00 5.52
5503 15703 3.393149 GAAGAGGAAGAGGGGCGGC 62.393 68.421 0.00 0.00 0.00 6.53
5504 15704 2.736826 GGAAGAGGAAGAGGGGCGG 61.737 68.421 0.00 0.00 0.00 6.13
5505 15705 2.736826 GGGAAGAGGAAGAGGGGCG 61.737 68.421 0.00 0.00 0.00 6.13
5506 15706 0.990818 ATGGGAAGAGGAAGAGGGGC 60.991 60.000 0.00 0.00 0.00 5.80
5507 15707 1.135960 GATGGGAAGAGGAAGAGGGG 58.864 60.000 0.00 0.00 0.00 4.79
5508 15708 1.885049 TGATGGGAAGAGGAAGAGGG 58.115 55.000 0.00 0.00 0.00 4.30
5509 15709 2.421248 GCTTGATGGGAAGAGGAAGAGG 60.421 54.545 0.00 0.00 0.00 3.69
5510 15710 2.238144 TGCTTGATGGGAAGAGGAAGAG 59.762 50.000 0.00 0.00 0.00 2.85
5511 15711 2.026822 GTGCTTGATGGGAAGAGGAAGA 60.027 50.000 0.00 0.00 0.00 2.87
5512 15712 2.290514 TGTGCTTGATGGGAAGAGGAAG 60.291 50.000 0.00 0.00 0.00 3.46
5513 15713 1.704628 TGTGCTTGATGGGAAGAGGAA 59.295 47.619 0.00 0.00 0.00 3.36
5514 15714 1.361204 TGTGCTTGATGGGAAGAGGA 58.639 50.000 0.00 0.00 0.00 3.71
5515 15715 2.022195 CATGTGCTTGATGGGAAGAGG 58.978 52.381 0.00 0.00 0.00 3.69
5516 15716 2.719739 ACATGTGCTTGATGGGAAGAG 58.280 47.619 0.00 0.00 0.00 2.85
5517 15717 2.885135 ACATGTGCTTGATGGGAAGA 57.115 45.000 0.00 0.00 0.00 2.87
5518 15718 2.352651 CGTACATGTGCTTGATGGGAAG 59.647 50.000 9.11 0.00 0.00 3.46
5519 15719 2.290008 ACGTACATGTGCTTGATGGGAA 60.290 45.455 9.11 0.00 0.00 3.97
5520 15720 1.277842 ACGTACATGTGCTTGATGGGA 59.722 47.619 9.11 0.00 0.00 4.37
5521 15721 1.398041 CACGTACATGTGCTTGATGGG 59.602 52.381 14.05 0.00 32.31 4.00
5522 15722 2.076100 ACACGTACATGTGCTTGATGG 58.924 47.619 23.73 5.24 43.74 3.51
5523 15723 3.186205 TGAACACGTACATGTGCTTGATG 59.814 43.478 23.73 13.14 43.74 3.07
5524 15724 3.398406 TGAACACGTACATGTGCTTGAT 58.602 40.909 23.73 14.10 43.74 2.57
5525 15725 2.827652 TGAACACGTACATGTGCTTGA 58.172 42.857 23.73 2.30 43.74 3.02
5526 15726 3.600717 TTGAACACGTACATGTGCTTG 57.399 42.857 16.98 16.98 43.74 4.01
5527 15727 3.003275 CCTTTGAACACGTACATGTGCTT 59.997 43.478 9.11 0.00 43.74 3.91
5528 15728 2.548057 CCTTTGAACACGTACATGTGCT 59.452 45.455 9.11 0.00 43.74 4.40
5529 15729 2.350388 CCCTTTGAACACGTACATGTGC 60.350 50.000 9.11 6.17 43.74 4.57
5530 15730 2.350388 GCCCTTTGAACACGTACATGTG 60.350 50.000 9.11 0.00 45.41 3.21
5531 15731 1.877443 GCCCTTTGAACACGTACATGT 59.123 47.619 2.69 2.69 0.00 3.21
5532 15732 2.151202 AGCCCTTTGAACACGTACATG 58.849 47.619 0.00 0.00 0.00 3.21
5533 15733 2.552315 CAAGCCCTTTGAACACGTACAT 59.448 45.455 0.00 0.00 39.21 2.29
5534 15734 1.944024 CAAGCCCTTTGAACACGTACA 59.056 47.619 0.00 0.00 39.21 2.90
5535 15735 1.944709 ACAAGCCCTTTGAACACGTAC 59.055 47.619 0.00 0.00 39.21 3.67
5536 15736 2.215196 GACAAGCCCTTTGAACACGTA 58.785 47.619 0.00 0.00 39.21 3.57
5537 15737 1.021968 GACAAGCCCTTTGAACACGT 58.978 50.000 0.00 0.00 39.21 4.49
5538 15738 1.002468 CTGACAAGCCCTTTGAACACG 60.002 52.381 0.00 0.00 39.21 4.49
5539 15739 1.338020 CCTGACAAGCCCTTTGAACAC 59.662 52.381 0.00 0.00 39.21 3.32
5540 15740 1.691196 CCTGACAAGCCCTTTGAACA 58.309 50.000 0.00 0.00 39.21 3.18
5541 15741 0.961753 CCCTGACAAGCCCTTTGAAC 59.038 55.000 0.00 0.00 39.21 3.18
5542 15742 0.827507 GCCCTGACAAGCCCTTTGAA 60.828 55.000 0.00 0.00 39.21 2.69
5543 15743 1.228552 GCCCTGACAAGCCCTTTGA 60.229 57.895 0.00 0.00 39.21 2.69
5544 15744 2.278330 GGCCCTGACAAGCCCTTTG 61.278 63.158 5.05 0.00 43.76 2.77
5545 15745 2.118294 GGCCCTGACAAGCCCTTT 59.882 61.111 5.05 0.00 43.76 3.11
5550 15750 1.318158 CCTTGATGGCCCTGACAAGC 61.318 60.000 17.11 0.00 38.52 4.01
5551 15751 0.329261 TCCTTGATGGCCCTGACAAG 59.671 55.000 16.17 16.17 39.24 3.16
5552 15752 0.038166 GTCCTTGATGGCCCTGACAA 59.962 55.000 0.00 0.37 35.26 3.18
5553 15753 0.842030 AGTCCTTGATGGCCCTGACA 60.842 55.000 0.00 0.00 35.26 3.58
5554 15754 1.134371 GTAGTCCTTGATGGCCCTGAC 60.134 57.143 0.00 0.00 35.26 3.51
5555 15755 1.204146 GTAGTCCTTGATGGCCCTGA 58.796 55.000 0.00 0.00 35.26 3.86
5556 15756 0.181350 GGTAGTCCTTGATGGCCCTG 59.819 60.000 0.00 0.00 35.26 4.45
5557 15757 0.044855 AGGTAGTCCTTGATGGCCCT 59.955 55.000 0.00 0.00 42.12 5.19
5558 15758 0.470341 GAGGTAGTCCTTGATGGCCC 59.530 60.000 0.00 0.00 45.24 5.80
5559 15759 0.470341 GGAGGTAGTCCTTGATGGCC 59.530 60.000 0.00 0.00 45.24 5.36
5560 15760 0.105039 CGGAGGTAGTCCTTGATGGC 59.895 60.000 0.00 0.00 45.24 4.40
5561 15761 0.105039 GCGGAGGTAGTCCTTGATGG 59.895 60.000 0.00 0.00 45.24 3.51
5562 15762 0.249073 CGCGGAGGTAGTCCTTGATG 60.249 60.000 0.00 0.00 45.24 3.07
5563 15763 0.683504 ACGCGGAGGTAGTCCTTGAT 60.684 55.000 12.47 0.00 45.24 2.57
5564 15764 1.303888 ACGCGGAGGTAGTCCTTGA 60.304 57.895 12.47 0.00 45.24 3.02
5565 15765 1.139095 GACGCGGAGGTAGTCCTTG 59.861 63.158 12.47 0.00 45.24 3.61
5566 15766 3.600843 GACGCGGAGGTAGTCCTT 58.399 61.111 12.47 0.00 45.24 3.36
5569 15769 3.885521 CCGGACGCGGAGGTAGTC 61.886 72.222 12.47 0.00 0.00 2.59
5580 15780 2.678934 TTCCAGAGACCCCGGACG 60.679 66.667 0.73 0.00 0.00 4.79
5581 15781 1.605971 GAGTTCCAGAGACCCCGGAC 61.606 65.000 0.73 0.00 0.00 4.79
5582 15782 1.305046 GAGTTCCAGAGACCCCGGA 60.305 63.158 0.73 0.00 0.00 5.14
5583 15783 2.711922 CGAGTTCCAGAGACCCCGG 61.712 68.421 0.00 0.00 0.00 5.73
5584 15784 2.711922 CCGAGTTCCAGAGACCCCG 61.712 68.421 0.00 0.00 0.00 5.73
5585 15785 2.359967 CCCGAGTTCCAGAGACCCC 61.360 68.421 0.00 0.00 0.00 4.95
5586 15786 3.020237 GCCCGAGTTCCAGAGACCC 62.020 68.421 0.00 0.00 0.00 4.46
5587 15787 1.617947 ATGCCCGAGTTCCAGAGACC 61.618 60.000 0.00 0.00 0.00 3.85
5588 15788 0.460987 CATGCCCGAGTTCCAGAGAC 60.461 60.000 0.00 0.00 0.00 3.36
5589 15789 0.614697 TCATGCCCGAGTTCCAGAGA 60.615 55.000 0.00 0.00 0.00 3.10
5590 15790 0.179089 CTCATGCCCGAGTTCCAGAG 60.179 60.000 0.00 0.00 0.00 3.35
5591 15791 1.900351 CTCATGCCCGAGTTCCAGA 59.100 57.895 0.00 0.00 0.00 3.86
5592 15792 1.817099 GCTCATGCCCGAGTTCCAG 60.817 63.158 1.87 0.00 35.33 3.86
5593 15793 2.268920 GCTCATGCCCGAGTTCCA 59.731 61.111 1.87 0.00 35.33 3.53
5594 15794 2.852495 TTCGCTCATGCCCGAGTTCC 62.852 60.000 7.42 0.00 35.33 3.62
5595 15795 1.447838 TTCGCTCATGCCCGAGTTC 60.448 57.895 7.42 0.00 35.33 3.01
5596 15796 1.741770 GTTCGCTCATGCCCGAGTT 60.742 57.895 7.42 0.00 35.33 3.01
5597 15797 2.125512 GTTCGCTCATGCCCGAGT 60.126 61.111 7.42 0.00 35.33 4.18
5598 15798 2.892425 GGTTCGCTCATGCCCGAG 60.892 66.667 7.42 0.00 34.68 4.63
5599 15799 4.812476 CGGTTCGCTCATGCCCGA 62.812 66.667 3.83 3.83 41.74 5.14
5600 15800 4.812476 TCGGTTCGCTCATGCCCG 62.812 66.667 0.00 0.00 40.96 6.13
5601 15801 2.892425 CTCGGTTCGCTCATGCCC 60.892 66.667 0.00 0.00 35.36 5.36
5602 15802 1.880340 CTCTCGGTTCGCTCATGCC 60.880 63.158 0.00 0.00 35.36 4.40
5603 15803 1.880340 CCTCTCGGTTCGCTCATGC 60.880 63.158 0.00 0.00 0.00 4.06
5604 15804 1.880340 GCCTCTCGGTTCGCTCATG 60.880 63.158 0.00 0.00 0.00 3.07
5605 15805 2.010582 GAGCCTCTCGGTTCGCTCAT 62.011 60.000 9.59 0.00 45.64 2.90
5606 15806 2.676822 AGCCTCTCGGTTCGCTCA 60.677 61.111 0.00 0.00 0.00 4.26
5607 15807 2.010582 ATGAGCCTCTCGGTTCGCTC 62.011 60.000 0.00 0.00 46.35 5.03
5608 15808 2.010582 GATGAGCCTCTCGGTTCGCT 62.011 60.000 0.00 0.00 42.91 4.93
5609 15809 1.590259 GATGAGCCTCTCGGTTCGC 60.590 63.158 0.00 0.00 42.91 4.70
5610 15810 1.298713 CGATGAGCCTCTCGGTTCG 60.299 63.158 5.89 4.48 42.91 3.95
5611 15811 4.719997 CGATGAGCCTCTCGGTTC 57.280 61.111 5.89 0.00 40.62 3.62
5615 15815 0.038709 GGATTCCGATGAGCCTCTCG 60.039 60.000 6.60 6.60 32.35 4.04
5616 15816 1.043816 TGGATTCCGATGAGCCTCTC 58.956 55.000 0.00 0.00 0.00 3.20
5617 15817 1.347050 CATGGATTCCGATGAGCCTCT 59.653 52.381 8.58 0.00 0.00 3.69
5618 15818 1.610102 CCATGGATTCCGATGAGCCTC 60.610 57.143 5.56 0.00 0.00 4.70
5619 15819 0.399454 CCATGGATTCCGATGAGCCT 59.601 55.000 5.56 0.00 0.00 4.58
5620 15820 1.239968 GCCATGGATTCCGATGAGCC 61.240 60.000 18.40 0.00 0.00 4.70
5621 15821 0.535780 TGCCATGGATTCCGATGAGC 60.536 55.000 18.40 14.00 0.00 4.26
5622 15822 1.810755 CATGCCATGGATTCCGATGAG 59.189 52.381 18.40 7.46 0.00 2.90
5623 15823 1.900245 CATGCCATGGATTCCGATGA 58.100 50.000 18.40 0.39 0.00 2.92
5624 15824 0.242825 GCATGCCATGGATTCCGATG 59.757 55.000 18.40 7.80 0.00 3.84
5625 15825 0.111832 AGCATGCCATGGATTCCGAT 59.888 50.000 18.40 0.00 0.00 4.18
5626 15826 0.106569 AAGCATGCCATGGATTCCGA 60.107 50.000 18.40 0.00 0.00 4.55
5627 15827 0.031585 CAAGCATGCCATGGATTCCG 59.968 55.000 18.40 0.00 0.00 4.30
5628 15828 3.980583 CAAGCATGCCATGGATTCC 57.019 52.632 18.40 0.00 0.00 3.01
5647 15847 1.186917 TCATTTGGGCTGGCAACTGG 61.187 55.000 2.88 0.00 35.79 4.00
5648 15848 0.245539 CTCATTTGGGCTGGCAACTG 59.754 55.000 2.88 1.17 38.80 3.16
5649 15849 0.112995 TCTCATTTGGGCTGGCAACT 59.887 50.000 2.88 0.00 37.61 3.16
5650 15850 0.968405 TTCTCATTTGGGCTGGCAAC 59.032 50.000 2.88 0.00 0.00 4.17
5651 15851 1.203038 TCTTCTCATTTGGGCTGGCAA 60.203 47.619 2.88 0.00 0.00 4.52
5652 15852 0.405198 TCTTCTCATTTGGGCTGGCA 59.595 50.000 2.88 0.00 0.00 4.92
5653 15853 1.407979 CATCTTCTCATTTGGGCTGGC 59.592 52.381 0.00 0.00 0.00 4.85
5654 15854 2.426024 CACATCTTCTCATTTGGGCTGG 59.574 50.000 0.00 0.00 0.00 4.85
5655 15855 2.159282 GCACATCTTCTCATTTGGGCTG 60.159 50.000 0.00 0.00 35.63 4.85
5656 15856 2.097825 GCACATCTTCTCATTTGGGCT 58.902 47.619 0.00 0.00 35.63 5.19
5657 15857 2.097825 AGCACATCTTCTCATTTGGGC 58.902 47.619 0.00 0.00 38.79 5.36
5658 15858 4.264253 TGTAGCACATCTTCTCATTTGGG 58.736 43.478 0.00 0.00 0.00 4.12
5677 15877 3.508402 TCTGCGAACTACAACCAGATGTA 59.492 43.478 0.00 0.00 34.75 2.29
5678 15878 2.299013 TCTGCGAACTACAACCAGATGT 59.701 45.455 0.00 0.00 37.32 3.06
5679 15879 2.959516 TCTGCGAACTACAACCAGATG 58.040 47.619 0.00 0.00 0.00 2.90
5680 15880 3.895232 ATCTGCGAACTACAACCAGAT 57.105 42.857 0.00 0.00 38.16 2.90
5681 15881 3.325870 CAATCTGCGAACTACAACCAGA 58.674 45.455 0.00 0.00 37.01 3.86
5682 15882 2.159653 GCAATCTGCGAACTACAACCAG 60.160 50.000 0.00 0.00 31.71 4.00
5683 15883 1.804151 GCAATCTGCGAACTACAACCA 59.196 47.619 0.00 0.00 31.71 3.67
5684 15884 2.527442 GCAATCTGCGAACTACAACC 57.473 50.000 0.00 0.00 31.71 3.77
5758 15958 2.494918 CCCACGGTCCTTAGCTCG 59.505 66.667 0.00 0.00 0.00 5.03
5799 15999 3.069443 TCTCAAACCCAAATCAACCTTGC 59.931 43.478 0.00 0.00 0.00 4.01
5886 16086 5.336744 CCAAGTACGTGAAACACATTTTGT 58.663 37.500 10.61 0.00 41.74 2.83
5933 16133 3.055458 TGGATTAGACGATTGCTGTCCAA 60.055 43.478 0.00 0.00 37.04 3.53
6133 16359 8.499162 ACAGAGTATAATTTATGAAAGCGCATC 58.501 33.333 11.47 8.39 0.00 3.91
6135 16361 7.786178 ACAGAGTATAATTTATGAAAGCGCA 57.214 32.000 11.47 0.00 0.00 6.09
6175 16403 9.405587 GAAACGATGGATTCTCAAAAATTTGTA 57.594 29.630 5.84 0.00 39.18 2.41
6176 16404 8.143835 AGAAACGATGGATTCTCAAAAATTTGT 58.856 29.630 5.84 0.00 39.18 2.83
6245 21439 1.532437 CGCAACTTGCTCAACATCTGA 59.468 47.619 11.93 0.00 42.25 3.27
6251 21445 4.537015 AGTAAAATCGCAACTTGCTCAAC 58.463 39.130 11.93 2.30 42.25 3.18
6257 21451 5.408604 ACTGGTCTAGTAAAATCGCAACTTG 59.591 40.000 0.00 0.00 38.04 3.16
6279 21473 4.038642 GGACTTGAGAGAAGACACTGAACT 59.961 45.833 0.00 0.00 0.00 3.01
6283 21477 4.533919 ATGGACTTGAGAGAAGACACTG 57.466 45.455 0.00 0.00 0.00 3.66
6415 21613 3.119743 ACCAAATCATGCATGACGAGTTG 60.120 43.478 30.92 26.57 40.03 3.16
6502 24166 6.515531 GCTCTCTTCATCAGATCTAACCTCTG 60.516 46.154 0.00 0.00 41.23 3.35
6503 24167 5.536161 GCTCTCTTCATCAGATCTAACCTCT 59.464 44.000 0.00 0.00 0.00 3.69
6504 24168 5.278957 GGCTCTCTTCATCAGATCTAACCTC 60.279 48.000 0.00 0.00 0.00 3.85
6505 24169 4.588528 GGCTCTCTTCATCAGATCTAACCT 59.411 45.833 0.00 0.00 0.00 3.50
6507 24171 4.558496 CGGGCTCTCTTCATCAGATCTAAC 60.558 50.000 0.00 0.00 0.00 2.34
6508 24172 3.571828 CGGGCTCTCTTCATCAGATCTAA 59.428 47.826 0.00 0.00 0.00 2.10
6509 24173 3.153130 CGGGCTCTCTTCATCAGATCTA 58.847 50.000 0.00 0.00 0.00 1.98
6510 24174 1.962807 CGGGCTCTCTTCATCAGATCT 59.037 52.381 0.00 0.00 0.00 2.75
6511 24175 1.686052 ACGGGCTCTCTTCATCAGATC 59.314 52.381 0.00 0.00 0.00 2.75
6512 24176 1.786937 ACGGGCTCTCTTCATCAGAT 58.213 50.000 0.00 0.00 0.00 2.90
6513 24177 1.561643 AACGGGCTCTCTTCATCAGA 58.438 50.000 0.00 0.00 0.00 3.27
6514 24178 2.428890 AGTAACGGGCTCTCTTCATCAG 59.571 50.000 0.00 0.00 0.00 2.90
6515 24179 2.166459 CAGTAACGGGCTCTCTTCATCA 59.834 50.000 0.00 0.00 0.00 3.07
6516 24180 2.815478 CAGTAACGGGCTCTCTTCATC 58.185 52.381 0.00 0.00 0.00 2.92
6517 24181 1.134670 GCAGTAACGGGCTCTCTTCAT 60.135 52.381 0.00 0.00 0.00 2.57
6518 24182 0.246635 GCAGTAACGGGCTCTCTTCA 59.753 55.000 0.00 0.00 0.00 3.02
6522 24186 2.202756 CGGCAGTAACGGGCTCTC 60.203 66.667 0.00 0.00 0.00 3.20
6528 24192 1.739929 TGCATGTCGGCAGTAACGG 60.740 57.895 0.00 0.00 39.25 4.44
6735 24399 6.716628 TCAATTTCTTAACAGAAGATGGCAGT 59.283 34.615 0.00 0.00 40.28 4.40
6753 24417 7.336931 TCAAGGTACCTAATCAGCTTCAATTTC 59.663 37.037 16.67 0.00 30.38 2.17
6765 24429 4.130118 CTGTGGCATCAAGGTACCTAATC 58.870 47.826 16.67 3.03 0.00 1.75
6824 24488 8.360390 GGATAAGAGTTTCCATGTTTTGAAGTT 58.640 33.333 0.00 0.00 31.99 2.66
6849 24513 1.614903 TCAAGCAAGCAATTGGACAGG 59.385 47.619 7.72 0.00 0.00 4.00
6950 24614 1.055040 GAGCTCCCCTAGTGATGCAT 58.945 55.000 0.87 0.00 0.00 3.96
6981 24645 2.700897 ACACCCGGATAGATTGAGGAAG 59.299 50.000 0.73 0.00 0.00 3.46
7089 25038 4.219288 AGTTGATCAAAACATTCAGGGAGC 59.781 41.667 10.35 0.00 32.21 4.70
7134 25083 5.011329 TCGGAGTTTAGGACAGCTTTTTAGA 59.989 40.000 0.00 0.00 0.00 2.10
7139 25088 2.367567 TGTCGGAGTTTAGGACAGCTTT 59.632 45.455 0.00 0.00 35.89 3.51
7164 25113 3.071602 ACAACTTGCATAGTGACTCTGGT 59.928 43.478 0.06 0.00 37.12 4.00
7194 25143 9.427821 AGACAGTATGACAAATAGAGATACCTT 57.572 33.333 0.00 0.00 39.69 3.50
7199 25148 8.532186 ACTCAGACAGTATGACAAATAGAGAT 57.468 34.615 0.00 0.00 39.69 2.75
7224 25173 0.341258 AGGAGGGGAGCTCATTGAGA 59.659 55.000 17.87 0.00 0.00 3.27
7288 25237 5.584253 TCAGAGCAGTCCTTCATAAGTAC 57.416 43.478 0.00 0.00 0.00 2.73
7306 25255 4.162888 AGTCATGTCACCAATGCTATCAGA 59.837 41.667 0.00 0.00 0.00 3.27
7342 25291 7.933396 TCATAAGTTGCATTATCAATCACCAG 58.067 34.615 0.00 0.00 0.00 4.00
7385 25334 6.612306 AGATTTAGACGTTTTTCAATGGCTC 58.388 36.000 0.00 0.00 38.36 4.70
7393 25342 4.915667 GCCCACAAGATTTAGACGTTTTTC 59.084 41.667 0.00 0.00 0.00 2.29
7398 25347 2.224426 TGTGCCCACAAGATTTAGACGT 60.224 45.455 0.00 0.00 38.56 4.34
7430 25379 5.693104 CCTCTACTCTCTATCTCGTGTACAC 59.307 48.000 16.32 16.32 0.00 2.90
7437 25386 4.574892 TGCATCCTCTACTCTCTATCTCG 58.425 47.826 0.00 0.00 0.00 4.04
7503 25452 5.078411 TGACATTCTGAAGGTCTAGAAGC 57.922 43.478 28.46 8.37 42.34 3.86
7507 25456 3.196469 TGCCTGACATTCTGAAGGTCTAG 59.804 47.826 28.46 23.06 42.34 2.43
7530 25479 3.056962 TGACTCTGTCTGCATCTTCTGAC 60.057 47.826 0.00 0.00 36.05 3.51
7531 25480 3.160269 TGACTCTGTCTGCATCTTCTGA 58.840 45.455 0.00 0.00 33.15 3.27
7577 25526 8.672823 ATTTCCGAAGTGAAGTTTTAGTACTT 57.327 30.769 0.00 0.00 40.92 2.24
7612 25561 0.543749 AGCCTGCCCAGTACAGATTC 59.456 55.000 0.00 0.00 37.32 2.52
7620 25569 4.021925 GGAACGAGCCTGCCCAGT 62.022 66.667 0.00 0.00 0.00 4.00
7625 25574 2.185608 GAGGAGGAACGAGCCTGC 59.814 66.667 10.75 10.75 45.78 4.85
7654 25603 6.285990 TCCTATACCCAATTAGCGAAAAGTC 58.714 40.000 0.00 0.00 0.00 3.01
7683 25632 4.081406 CAAACATCCAGTCAGGGAATTCA 58.919 43.478 7.93 0.00 41.12 2.57
7813 25762 8.657387 TTCCTAATGTTGGGAATGTTTATCAA 57.343 30.769 6.50 0.00 42.05 2.57
7851 25800 1.763545 GGTCCACCCTCTCCATAGAAC 59.236 57.143 0.00 0.00 0.00 3.01
7888 25837 5.276461 TCCATCAACGTCAATAGCAGTAT 57.724 39.130 0.00 0.00 0.00 2.12
7911 25860 3.312890 TGTCCACCATTCCACCAAATTT 58.687 40.909 0.00 0.00 0.00 1.82
7958 25907 5.360714 TGATGCAAATTAGGGATCAGAAACC 59.639 40.000 9.28 0.00 38.04 3.27
7965 25914 6.266103 TCTCCAAATGATGCAAATTAGGGATC 59.734 38.462 14.19 5.05 34.14 3.36
8006 25955 4.445879 GGGGATATGGTAGGAACTTCAACC 60.446 50.000 5.85 5.85 41.75 3.77
8109 26058 3.059352 AGAACCATCAAAGAAGGACGG 57.941 47.619 0.00 0.00 0.00 4.79
8119 26068 6.681729 ACTACACCTCTTTAGAACCATCAA 57.318 37.500 0.00 0.00 0.00 2.57
8120 26069 6.681729 AACTACACCTCTTTAGAACCATCA 57.318 37.500 0.00 0.00 0.00 3.07
8204 26153 1.617018 CCTCAATCCACTGGCCGAGA 61.617 60.000 8.91 0.00 0.00 4.04
8208 26157 0.329596 AAGTCCTCAATCCACTGGCC 59.670 55.000 0.00 0.00 0.00 5.36
8210 26159 1.815003 GCAAAGTCCTCAATCCACTGG 59.185 52.381 0.00 0.00 0.00 4.00
8217 26166 1.145738 ACCACTGGCAAAGTCCTCAAT 59.854 47.619 0.00 0.00 36.83 2.57
8234 26183 1.375908 GTGAAGCCTCGCATGACCA 60.376 57.895 0.00 0.00 31.98 4.02
8245 26194 1.261480 TCAGTGAGAGAGGTGAAGCC 58.739 55.000 0.00 0.00 37.58 4.35
8275 26224 3.823304 GCCTCCAAGAACTTCAATGACTT 59.177 43.478 0.00 0.00 0.00 3.01
8276 26225 3.181440 TGCCTCCAAGAACTTCAATGACT 60.181 43.478 0.00 0.00 0.00 3.41
8296 26245 1.520787 CGAACCATACCGGGAGTGC 60.521 63.158 6.32 0.00 40.22 4.40
8313 26262 0.378962 CTAGAGAAGCGAGGTCACCG 59.621 60.000 0.00 0.00 0.00 4.94
8317 26266 3.851976 TTCAACTAGAGAAGCGAGGTC 57.148 47.619 0.00 0.00 0.00 3.85
8369 26318 3.648339 TCTTCATGCTTTCAGGCAAAC 57.352 42.857 0.00 0.00 45.68 2.93
8396 26345 6.228273 TCAACGTCAATTTTCTTAGAGCAG 57.772 37.500 0.00 0.00 0.00 4.24
8397 26346 6.801539 ATCAACGTCAATTTTCTTAGAGCA 57.198 33.333 0.00 0.00 0.00 4.26
8398 26347 8.186178 TCTATCAACGTCAATTTTCTTAGAGC 57.814 34.615 0.00 0.00 0.00 4.09
8403 26352 6.204688 TGCACTCTATCAACGTCAATTTTCTT 59.795 34.615 0.00 0.00 0.00 2.52
8406 26355 5.940192 TGCACTCTATCAACGTCAATTTT 57.060 34.783 0.00 0.00 0.00 1.82
8409 26358 4.393062 CCTTTGCACTCTATCAACGTCAAT 59.607 41.667 0.00 0.00 0.00 2.57
8410 26359 3.745975 CCTTTGCACTCTATCAACGTCAA 59.254 43.478 0.00 0.00 0.00 3.18
8414 26363 2.076100 TGCCTTTGCACTCTATCAACG 58.924 47.619 0.00 0.00 44.23 4.10
8428 26377 2.495669 CCGGTAATGTTTCCATGCCTTT 59.504 45.455 0.00 0.00 0.00 3.11
8434 26383 1.470051 GGTGCCGGTAATGTTTCCAT 58.530 50.000 1.90 0.00 0.00 3.41
8439 26388 1.238625 CCAACGGTGCCGGTAATGTT 61.239 55.000 15.44 3.86 44.69 2.71
8448 26397 1.175983 TTGAATGTCCCAACGGTGCC 61.176 55.000 0.00 0.00 0.00 5.01
8450 26399 1.604604 AGTTGAATGTCCCAACGGTG 58.395 50.000 0.00 0.00 46.10 4.94
8451 26400 2.158667 AGAAGTTGAATGTCCCAACGGT 60.159 45.455 0.00 0.00 46.10 4.83
8452 26401 2.484264 GAGAAGTTGAATGTCCCAACGG 59.516 50.000 0.00 0.00 46.10 4.44
8453 26402 3.403038 AGAGAAGTTGAATGTCCCAACG 58.597 45.455 0.00 0.00 46.10 4.10
8501 26450 2.158623 TCAGGCAAAGATGTCAGGTTGT 60.159 45.455 0.00 0.00 31.99 3.32
8504 26453 2.957402 TTCAGGCAAAGATGTCAGGT 57.043 45.000 0.00 0.00 31.99 4.00
8511 26460 4.084287 TCTTCATGCTTTCAGGCAAAGAT 58.916 39.130 1.80 0.00 44.02 2.40
8513 26462 3.928727 TCTTCATGCTTTCAGGCAAAG 57.071 42.857 0.00 0.00 45.68 2.77
8539 26488 2.224113 ACGTCAGGTTTTTAAGAGCGGA 60.224 45.455 0.00 0.00 0.00 5.54
8541 26490 3.246699 TCAACGTCAGGTTTTTAAGAGCG 59.753 43.478 0.00 0.00 36.49 5.03
8544 26493 8.339714 CACTTTATCAACGTCAGGTTTTTAAGA 58.660 33.333 0.00 0.00 36.49 2.10
8549 26498 4.336993 TGCACTTTATCAACGTCAGGTTTT 59.663 37.500 0.00 0.00 36.49 2.43
8553 26502 4.481930 TTTGCACTTTATCAACGTCAGG 57.518 40.909 0.00 0.00 0.00 3.86
8558 26507 3.609373 CAGGCATTTGCACTTTATCAACG 59.391 43.478 4.74 0.00 44.36 4.10
8564 26513 3.386078 TGTTTCCAGGCATTTGCACTTTA 59.614 39.130 4.74 0.00 44.36 1.85
8566 26515 1.761784 TGTTTCCAGGCATTTGCACTT 59.238 42.857 4.74 0.00 44.36 3.16
8575 26524 0.322997 CCCGGTAATGTTTCCAGGCA 60.323 55.000 0.00 0.00 0.00 4.75
8577 26526 2.687935 CAATCCCGGTAATGTTTCCAGG 59.312 50.000 0.00 0.00 0.00 4.45
8578 26527 3.352648 ACAATCCCGGTAATGTTTCCAG 58.647 45.455 0.00 0.00 0.00 3.86
8594 26543 4.137543 AGAAGTCAACTGTCCCAACAATC 58.862 43.478 0.00 0.00 34.24 2.67
8596 26545 3.644966 AGAAGTCAACTGTCCCAACAA 57.355 42.857 0.00 0.00 34.24 2.83
8597 26546 3.644966 AAGAAGTCAACTGTCCCAACA 57.355 42.857 0.00 0.00 0.00 3.33
8617 26566 7.518370 GCAATCGCCGATTAAGATTTCTTCTAA 60.518 37.037 12.63 0.00 37.40 2.10
8621 26570 4.848757 GCAATCGCCGATTAAGATTTCTT 58.151 39.130 12.63 0.00 39.85 2.52
8622 26571 4.474226 GCAATCGCCGATTAAGATTTCT 57.526 40.909 12.63 0.00 32.87 2.52
8637 26586 0.609131 AAGTCAGGTTGGGGCAATCG 60.609 55.000 0.00 0.00 28.62 3.34
8655 26604 6.215845 GTTCTTAATGCTTTCAGGCAAAGAA 58.784 36.000 10.37 10.37 44.02 2.52
8673 26622 6.282199 ACTTTAAGAGCGATGAGGTTCTTA 57.718 37.500 0.00 0.00 38.28 2.10
8684 26633 4.521639 TCAACCTCAGTACTTTAAGAGCGA 59.478 41.667 0.00 0.00 0.00 4.93
8695 26644 2.035961 TGCACTCTGTCAACCTCAGTAC 59.964 50.000 0.00 0.00 34.86 2.73
8696 26645 2.316108 TGCACTCTGTCAACCTCAGTA 58.684 47.619 0.00 0.00 34.86 2.74
9122 27071 3.992943 ACGATCCTGGTAATGTTTCCA 57.007 42.857 0.00 0.00 0.00 3.53
9123 27072 3.377172 CCAACGATCCTGGTAATGTTTCC 59.623 47.826 0.00 0.00 0.00 3.13
9135 28028 1.002087 GTCAACTGTCCCAACGATCCT 59.998 52.381 0.00 0.00 0.00 3.24
9180 28361 1.205417 GATGACAGGTTGGGGCAATTG 59.795 52.381 0.00 0.00 0.00 2.32
9349 28530 4.067896 GTGAGGTTCTTCATGCTTTCAGA 58.932 43.478 0.00 0.00 0.00 3.27
9441 28624 3.055819 GGTGATAAGTTGCTCCAGAGACA 60.056 47.826 0.00 0.00 0.00 3.41
9448 28631 1.009829 CGCAGGTGATAAGTTGCTCC 58.990 55.000 0.00 0.00 34.50 4.70
9595 28778 2.434336 CCAGAATTCGACTGTGGGGATA 59.566 50.000 0.00 0.00 34.04 2.59
9673 28856 1.017387 GGCTGGGTGACGAATCAATC 58.983 55.000 0.00 0.00 36.31 2.67
9684 28867 4.351054 GGGACAGGTGGCTGGGTG 62.351 72.222 0.00 0.00 0.00 4.61
9685 28868 4.918360 TGGGACAGGTGGCTGGGT 62.918 66.667 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.