Multiple sequence alignment - TraesCS5D01G558500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G558500 chr5D 100.000 4041 0 0 1 4041 560229503 560225463 0.000000e+00 7463.0
1 TraesCS5D01G558500 chr5D 79.894 189 14 8 2202 2366 107313159 107312971 2.550000e-22 117.0
2 TraesCS5D01G558500 chr5D 91.892 37 3 0 2116 2152 42863810 42863774 7.000000e-03 52.8
3 TraesCS5D01G558500 chr5B 88.548 1240 51 40 2189 3367 710611066 710609857 0.000000e+00 1419.0
4 TraesCS5D01G558500 chr5B 80.999 1342 87 77 780 2019 710613058 710611783 0.000000e+00 911.0
5 TraesCS5D01G558500 chr5B 83.375 794 53 29 2 773 710613966 710613230 0.000000e+00 662.0
6 TraesCS5D01G558500 chr5B 89.608 510 31 10 3552 4039 710609618 710609109 2.650000e-176 628.0
7 TraesCS5D01G558500 chr5B 88.966 145 6 6 2595 2738 553578905 553578770 1.930000e-38 171.0
8 TraesCS5D01G558500 chr5B 97.059 34 1 0 2116 2149 68902393 68902426 1.570000e-04 58.4
9 TraesCS5D01G558500 chr4A 86.394 904 44 32 2622 3514 604103193 604104028 0.000000e+00 915.0
10 TraesCS5D01G558500 chr4A 89.385 537 30 8 3527 4041 604104081 604104612 0.000000e+00 651.0
11 TraesCS5D01G558500 chr4A 91.277 321 14 4 2287 2599 604102815 604103129 3.730000e-115 425.0
12 TraesCS5D01G558500 chr4A 79.182 269 30 18 1147 1399 604101448 604101706 3.230000e-36 163.0
13 TraesCS5D01G558500 chr4A 82.178 101 14 3 951 1047 604101260 604101360 2.590000e-12 84.2
14 TraesCS5D01G558500 chr4A 96.970 33 1 0 2117 2149 455925552 455925520 5.640000e-04 56.5
15 TraesCS5D01G558500 chr3A 83.936 498 63 8 3557 4038 663440718 663441214 1.020000e-125 460.0
16 TraesCS5D01G558500 chr3A 82.661 496 70 8 3557 4038 663450860 663451353 3.730000e-115 425.0
17 TraesCS5D01G558500 chr3B 83.532 504 66 7 3551 4038 700072235 700072737 4.760000e-124 455.0
18 TraesCS5D01G558500 chr3B 82.209 489 67 12 3569 4041 700235901 700235417 1.750000e-108 403.0
19 TraesCS5D01G558500 chr2B 85.579 423 46 12 3627 4038 25070182 25069764 2.890000e-116 429.0
20 TraesCS5D01G558500 chr2B 95.000 80 4 0 2287 2366 755390576 755390497 4.240000e-25 126.0
21 TraesCS5D01G558500 chr2B 97.143 35 1 0 2115 2149 728758308 728758342 4.360000e-05 60.2
22 TraesCS5D01G558500 chr3D 83.087 473 65 7 3557 4016 529502694 529503164 2.250000e-112 416.0
23 TraesCS5D01G558500 chr3D 100.000 30 0 0 2118 2147 27575881 27575852 5.640000e-04 56.5
24 TraesCS5D01G558500 chr2D 84.471 425 47 11 3627 4038 13771213 13770795 6.290000e-108 401.0
25 TraesCS5D01G558500 chr2D 88.966 145 6 4 2595 2738 72815935 72816070 1.930000e-38 171.0
26 TraesCS5D01G558500 chr2D 83.246 191 9 9 2199 2366 72815725 72815915 1.940000e-33 154.0
27 TraesCS5D01G558500 chr2D 86.111 144 10 4 2595 2737 254761730 254761596 3.250000e-31 147.0
28 TraesCS5D01G558500 chr2D 82.320 181 9 9 2208 2365 254761931 254761751 7.050000e-28 135.0
29 TraesCS5D01G558500 chr2D 81.905 105 6 3 1976 2067 254762091 254761987 4.330000e-10 76.8
30 TraesCS5D01G558500 chr2D 94.444 36 1 1 2114 2149 71411019 71410985 2.000000e-03 54.7
31 TraesCS5D01G558500 chrUn 88.276 145 7 4 2595 2738 184900993 184901128 8.990000e-37 165.0
32 TraesCS5D01G558500 chrUn 86.111 144 10 4 2595 2737 343091737 343091603 3.250000e-31 147.0
33 TraesCS5D01G558500 chrUn 86.014 143 10 4 2595 2736 343094201 343094068 1.170000e-30 145.0
34 TraesCS5D01G558500 chrUn 95.000 80 4 0 2287 2366 184900894 184900973 4.240000e-25 126.0
35 TraesCS5D01G558500 chr1A 88.276 145 7 3 2595 2738 425422880 425423015 8.990000e-37 165.0
36 TraesCS5D01G558500 chr1A 82.873 181 7 9 2210 2366 425422680 425422860 1.510000e-29 141.0
37 TraesCS5D01G558500 chr1A 83.810 105 4 2 1976 2067 425422518 425422622 2.000000e-13 87.9
38 TraesCS5D01G558500 chr1A 94.118 34 2 0 2116 2149 420008990 420009023 7.000000e-03 52.8
39 TraesCS5D01G558500 chr6A 85.455 165 6 9 2581 2736 376696428 376696583 5.410000e-34 156.0
40 TraesCS5D01G558500 chr6A 81.675 191 12 7 2199 2366 376696240 376696430 1.960000e-28 137.0
41 TraesCS5D01G558500 chr6A 82.857 105 5 6 1976 2067 376696089 376696193 9.310000e-12 82.4
42 TraesCS5D01G558500 chr7D 86.986 146 8 7 2595 2738 593568885 593569021 1.940000e-33 154.0
43 TraesCS5D01G558500 chr7D 83.799 179 7 9 2210 2366 593568688 593568866 2.520000e-32 150.0
44 TraesCS5D01G558500 chr7A 81.675 191 12 9 2199 2366 70102725 70102915 1.960000e-28 137.0
45 TraesCS5D01G558500 chr7A 93.750 80 5 0 2287 2366 517129148 517129227 1.970000e-23 121.0
46 TraesCS5D01G558500 chr7A 95.918 49 2 0 2019 2067 70102630 70102678 3.350000e-11 80.5
47 TraesCS5D01G558500 chr6D 93.902 82 4 1 2208 2288 459678774 459678693 5.480000e-24 122.0
48 TraesCS5D01G558500 chr6D 97.619 42 1 0 2026 2067 459678871 459678830 5.600000e-09 73.1
49 TraesCS5D01G558500 chr4D 100.000 29 0 0 2119 2147 17861308 17861280 2.000000e-03 54.7
50 TraesCS5D01G558500 chr1B 96.875 32 1 0 2118 2149 526113135 526113166 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G558500 chr5D 560225463 560229503 4040 True 7463.00 7463 100.0000 1 4041 1 chr5D.!!$R3 4040
1 TraesCS5D01G558500 chr5B 710609109 710613966 4857 True 905.00 1419 85.6325 2 4039 4 chr5B.!!$R2 4037
2 TraesCS5D01G558500 chr4A 604101260 604104612 3352 False 447.64 915 85.6832 951 4041 5 chr4A.!!$F1 3090
3 TraesCS5D01G558500 chr3B 700072235 700072737 502 False 455.00 455 83.5320 3551 4038 1 chr3B.!!$F1 487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 1089 0.322456 TGCTTGCTCCCATACACACC 60.322 55.0 0.0 0.0 0.0 4.16 F
2072 3204 0.111639 TTTTCTCTTCCCCAACCCCG 59.888 55.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2639 3907 0.535780 CAGCAGGAGGACAACAGCAA 60.536 55.0 0.00 0.0 0.00 3.91 R
3213 4503 0.520619 CGACGACGACGATGACACAT 60.521 55.0 15.32 0.0 42.66 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.625737 CAGGAAACGAGACATGCTGAT 58.374 47.619 0.00 0.00 34.83 2.90
35 36 2.098614 AGACATGCTGATGACTCTCGT 58.901 47.619 0.00 0.00 29.87 4.18
77 78 3.294214 CAGGGGTTGTAGGTAGTATCGT 58.706 50.000 0.00 0.00 0.00 3.73
78 79 3.067742 CAGGGGTTGTAGGTAGTATCGTG 59.932 52.174 0.00 0.00 0.00 4.35
90 91 4.098960 GGTAGTATCGTGTCCTTCCATCAA 59.901 45.833 0.00 0.00 0.00 2.57
110 111 2.367512 GGGAGAGGGAGGTGCCAT 60.368 66.667 0.00 0.00 38.95 4.40
111 112 2.750657 GGGAGAGGGAGGTGCCATG 61.751 68.421 0.00 0.00 38.95 3.66
112 113 2.191641 GAGAGGGAGGTGCCATGC 59.808 66.667 0.00 0.00 38.95 4.06
113 114 2.285969 AGAGGGAGGTGCCATGCT 60.286 61.111 0.00 0.00 38.95 3.79
114 115 2.124403 GAGGGAGGTGCCATGCTG 60.124 66.667 0.00 0.00 38.95 4.41
115 116 3.711059 GAGGGAGGTGCCATGCTGG 62.711 68.421 0.00 0.00 41.55 4.85
138 139 2.663852 CCACCGACAACCGTGGAC 60.664 66.667 0.00 0.00 39.87 4.02
197 198 5.182487 TCACGTGTAATTTAGCCACATGAT 58.818 37.500 16.51 0.00 34.13 2.45
239 240 6.092748 CCAGATGACGAAATAAGTTTTTGGG 58.907 40.000 0.00 0.00 0.00 4.12
260 261 4.461198 GGAAGGTCGGTGGATGAATTAAT 58.539 43.478 0.00 0.00 0.00 1.40
286 287 2.614259 TGAGGGGCCATTTAGCAAAAA 58.386 42.857 4.39 0.00 0.00 1.94
308 309 1.299468 GACGCTAGAGCCATCCGTG 60.299 63.158 0.00 0.00 37.91 4.94
367 374 1.768870 AGTGCACAACAAGTAGTCCCT 59.231 47.619 21.04 0.00 0.00 4.20
373 380 2.104281 ACAACAAGTAGTCCCTGTCACC 59.896 50.000 0.00 0.00 0.00 4.02
380 387 0.896019 AGTCCCTGTCACCAGACTCG 60.896 60.000 0.00 0.00 45.20 4.18
383 390 1.587054 CCTGTCACCAGACTCGTCC 59.413 63.158 0.00 0.00 45.20 4.79
398 405 2.817258 CTCGTCCATCCATCCTCTACTC 59.183 54.545 0.00 0.00 0.00 2.59
399 406 2.443632 TCGTCCATCCATCCTCTACTCT 59.556 50.000 0.00 0.00 0.00 3.24
400 407 3.651423 TCGTCCATCCATCCTCTACTCTA 59.349 47.826 0.00 0.00 0.00 2.43
401 408 3.754323 CGTCCATCCATCCTCTACTCTAC 59.246 52.174 0.00 0.00 0.00 2.59
402 409 4.505918 CGTCCATCCATCCTCTACTCTACT 60.506 50.000 0.00 0.00 0.00 2.57
426 433 5.673514 AGTAGGAGTACTAGTCTCTTTCGG 58.326 45.833 16.73 0.00 37.76 4.30
427 434 3.281158 AGGAGTACTAGTCTCTTTCGGC 58.719 50.000 16.73 4.97 33.06 5.54
428 435 3.015327 GGAGTACTAGTCTCTTTCGGCA 58.985 50.000 16.73 0.00 33.06 5.69
429 436 3.442977 GGAGTACTAGTCTCTTTCGGCAA 59.557 47.826 16.73 0.00 33.06 4.52
430 437 4.413969 GAGTACTAGTCTCTTTCGGCAAC 58.586 47.826 0.00 0.00 0.00 4.17
431 438 3.825014 AGTACTAGTCTCTTTCGGCAACA 59.175 43.478 0.00 0.00 0.00 3.33
432 439 3.746045 ACTAGTCTCTTTCGGCAACAA 57.254 42.857 0.00 0.00 0.00 2.83
433 440 4.067972 ACTAGTCTCTTTCGGCAACAAA 57.932 40.909 0.00 0.00 0.00 2.83
434 441 4.448210 ACTAGTCTCTTTCGGCAACAAAA 58.552 39.130 0.00 0.00 0.00 2.44
435 442 3.692791 AGTCTCTTTCGGCAACAAAAC 57.307 42.857 0.00 0.00 0.00 2.43
436 443 3.013921 AGTCTCTTTCGGCAACAAAACA 58.986 40.909 0.00 0.00 0.00 2.83
437 444 3.442273 AGTCTCTTTCGGCAACAAAACAA 59.558 39.130 0.00 0.00 0.00 2.83
438 445 3.791353 GTCTCTTTCGGCAACAAAACAAG 59.209 43.478 0.00 0.00 0.00 3.16
439 446 3.442273 TCTCTTTCGGCAACAAAACAAGT 59.558 39.130 0.00 0.00 0.00 3.16
440 447 4.082463 TCTCTTTCGGCAACAAAACAAGTT 60.082 37.500 0.00 0.00 0.00 2.66
441 448 3.923461 TCTTTCGGCAACAAAACAAGTTG 59.077 39.130 0.00 0.00 46.86 3.16
457 464 6.902224 ACAAGTTGCACTTTTATTTCAACC 57.098 33.333 1.81 0.00 36.03 3.77
465 472 9.474920 TTGCACTTTTATTTCAACCAGATAAAG 57.525 29.630 0.00 0.00 29.82 1.85
466 473 8.855110 TGCACTTTTATTTCAACCAGATAAAGA 58.145 29.630 0.00 0.00 29.82 2.52
496 506 7.406799 AATAAAATTGAAAAGGAAGTGCGTG 57.593 32.000 0.00 0.00 0.00 5.34
499 509 3.896648 TTGAAAAGGAAGTGCGTGATC 57.103 42.857 0.00 0.00 0.00 2.92
531 546 1.879430 CGTGGTGTGGACGAAACGT 60.879 57.895 0.00 0.00 45.10 3.99
534 549 1.258720 GTGGTGTGGACGAAACGTAAC 59.741 52.381 0.00 0.00 41.37 2.50
546 561 6.147000 GGACGAAACGTAACCTAACCATTTTA 59.853 38.462 0.00 0.00 41.37 1.52
584 599 4.424626 ACGATCGAGTGTACGTACTCTTA 58.575 43.478 26.08 19.02 43.82 2.10
585 600 5.046529 ACGATCGAGTGTACGTACTCTTAT 58.953 41.667 26.08 21.91 43.82 1.73
644 659 9.847224 TTATATAGTTCTTCCTTCATCCAAACC 57.153 33.333 0.00 0.00 0.00 3.27
646 661 5.003096 AGTTCTTCCTTCATCCAAACCAT 57.997 39.130 0.00 0.00 0.00 3.55
647 662 4.768968 AGTTCTTCCTTCATCCAAACCATG 59.231 41.667 0.00 0.00 0.00 3.66
736 762 6.502652 GGAGGGAGTAGACGTATTTTAGTTC 58.497 44.000 0.00 0.00 0.00 3.01
740 766 7.013178 AGGGAGTAGACGTATTTTAGTTCTAGC 59.987 40.741 0.00 0.00 0.00 3.42
746 772 7.201835 AGACGTATTTTAGTTCTAGCTAAGCC 58.798 38.462 0.00 0.00 33.16 4.35
756 782 9.765795 TTAGTTCTAGCTAAGCCATTTCTATTC 57.234 33.333 0.00 0.00 0.00 1.75
761 787 9.277783 TCTAGCTAAGCCATTTCTATTCATTTC 57.722 33.333 0.00 0.00 0.00 2.17
765 791 9.028185 GCTAAGCCATTTCTATTCATTTCTTTG 57.972 33.333 0.00 0.00 0.00 2.77
767 793 8.992835 AAGCCATTTCTATTCATTTCTTTGAC 57.007 30.769 0.00 0.00 0.00 3.18
769 795 8.587608 AGCCATTTCTATTCATTTCTTTGACAA 58.412 29.630 0.00 0.00 0.00 3.18
770 796 8.866956 GCCATTTCTATTCATTTCTTTGACAAG 58.133 33.333 0.00 0.00 0.00 3.16
771 797 9.918630 CCATTTCTATTCATTTCTTTGACAAGT 57.081 29.630 0.00 0.00 0.00 3.16
802 992 6.726764 AGTATTTCTGAACAAGAGGGAGTAGT 59.273 38.462 0.00 0.00 35.91 2.73
816 1006 8.554490 AGAGGGAGTAGTATTTATTGATGTGT 57.446 34.615 0.00 0.00 0.00 3.72
837 1027 2.241941 TGCAAGATAAGATTGGCCCTCA 59.758 45.455 0.00 0.00 0.00 3.86
894 1089 0.322456 TGCTTGCTCCCATACACACC 60.322 55.000 0.00 0.00 0.00 4.16
905 1100 1.205460 ATACACACCACCTGTCCCCC 61.205 60.000 0.00 0.00 0.00 5.40
928 1123 4.039004 CCTCTCTCTCTCTCTCTCTCTCTG 59.961 54.167 0.00 0.00 0.00 3.35
930 1125 4.403752 TCTCTCTCTCTCTCTCTCTCTGTG 59.596 50.000 0.00 0.00 0.00 3.66
931 1126 3.118629 TCTCTCTCTCTCTCTCTCTGTGC 60.119 52.174 0.00 0.00 0.00 4.57
932 1127 2.571202 TCTCTCTCTCTCTCTCTGTGCA 59.429 50.000 0.00 0.00 0.00 4.57
933 1128 3.008923 TCTCTCTCTCTCTCTCTGTGCAA 59.991 47.826 0.00 0.00 0.00 4.08
934 1129 3.758023 CTCTCTCTCTCTCTCTGTGCAAA 59.242 47.826 0.00 0.00 0.00 3.68
935 1130 3.758023 TCTCTCTCTCTCTCTGTGCAAAG 59.242 47.826 0.00 0.00 0.00 2.77
936 1131 3.758023 CTCTCTCTCTCTCTGTGCAAAGA 59.242 47.826 6.39 6.39 0.00 2.52
937 1132 3.758023 TCTCTCTCTCTCTGTGCAAAGAG 59.242 47.826 25.71 25.71 44.34 2.85
944 1139 4.944619 TCTCTGTGCAAAGAGAGAAAGA 57.055 40.909 29.32 9.63 46.13 2.52
945 1140 5.282055 TCTCTGTGCAAAGAGAGAAAGAA 57.718 39.130 29.32 8.67 46.13 2.52
946 1141 5.053145 TCTCTGTGCAAAGAGAGAAAGAAC 58.947 41.667 29.32 0.00 46.13 3.01
947 1142 4.130118 TCTGTGCAAAGAGAGAAAGAACC 58.870 43.478 1.21 0.00 0.00 3.62
950 1145 3.003793 GTGCAAAGAGAGAAAGAACCACC 59.996 47.826 0.00 0.00 0.00 4.61
951 1146 3.117888 TGCAAAGAGAGAAAGAACCACCT 60.118 43.478 0.00 0.00 0.00 4.00
955 1150 5.888982 AAGAGAGAAAGAACCACCTACAA 57.111 39.130 0.00 0.00 0.00 2.41
956 1151 5.888982 AGAGAGAAAGAACCACCTACAAA 57.111 39.130 0.00 0.00 0.00 2.83
957 1152 5.612351 AGAGAGAAAGAACCACCTACAAAC 58.388 41.667 0.00 0.00 0.00 2.93
958 1153 5.130477 AGAGAGAAAGAACCACCTACAAACA 59.870 40.000 0.00 0.00 0.00 2.83
959 1154 5.368989 AGAGAAAGAACCACCTACAAACAG 58.631 41.667 0.00 0.00 0.00 3.16
960 1155 5.130477 AGAGAAAGAACCACCTACAAACAGA 59.870 40.000 0.00 0.00 0.00 3.41
961 1156 5.123936 AGAAAGAACCACCTACAAACAGAC 58.876 41.667 0.00 0.00 0.00 3.51
967 1162 2.146342 CACCTACAAACAGACAGGCAG 58.854 52.381 0.00 0.00 0.00 4.85
988 1183 0.326264 GGAAGCAGAGCAAGGAGGAA 59.674 55.000 0.00 0.00 0.00 3.36
996 1191 3.007831 CAGAGCAAGGAGGAAGAAGAAGT 59.992 47.826 0.00 0.00 0.00 3.01
997 1192 3.007831 AGAGCAAGGAGGAAGAAGAAGTG 59.992 47.826 0.00 0.00 0.00 3.16
998 1193 2.975489 AGCAAGGAGGAAGAAGAAGTGA 59.025 45.455 0.00 0.00 0.00 3.41
1042 1271 3.647113 CAGGGAGATGGATCTGATGAAGT 59.353 47.826 0.00 0.00 37.25 3.01
1047 1276 5.396101 GGAGATGGATCTGATGAAGTTGTCA 60.396 44.000 0.00 0.00 37.76 3.58
1050 1279 4.825422 TGGATCTGATGAAGTTGTCAGTC 58.175 43.478 12.28 9.81 41.92 3.51
1054 1283 3.259374 TCTGATGAAGTTGTCAGTCCTCC 59.741 47.826 12.28 0.00 41.92 4.30
1055 1284 3.242867 TGATGAAGTTGTCAGTCCTCCT 58.757 45.455 0.00 0.00 40.43 3.69
1056 1285 3.259374 TGATGAAGTTGTCAGTCCTCCTC 59.741 47.826 0.00 0.00 40.43 3.71
1059 1288 0.545548 AGTTGTCAGTCCTCCTCCCC 60.546 60.000 0.00 0.00 0.00 4.81
1060 1289 0.545548 GTTGTCAGTCCTCCTCCCCT 60.546 60.000 0.00 0.00 0.00 4.79
1062 1291 0.193574 TGTCAGTCCTCCTCCCCTTT 59.806 55.000 0.00 0.00 0.00 3.11
1063 1292 0.615850 GTCAGTCCTCCTCCCCTTTG 59.384 60.000 0.00 0.00 0.00 2.77
1064 1293 0.547712 TCAGTCCTCCTCCCCTTTGG 60.548 60.000 0.00 0.00 0.00 3.28
1065 1294 1.925972 AGTCCTCCTCCCCTTTGGC 60.926 63.158 0.00 0.00 0.00 4.52
1066 1295 2.614013 TCCTCCTCCCCTTTGGCC 60.614 66.667 0.00 0.00 0.00 5.36
1070 1299 0.613012 CTCCTCCCCTTTGGCCTTTG 60.613 60.000 3.32 0.00 0.00 2.77
1071 1300 1.610379 CCTCCCCTTTGGCCTTTGG 60.610 63.158 3.32 2.61 0.00 3.28
1072 1301 1.610379 CTCCCCTTTGGCCTTTGGG 60.610 63.158 17.12 17.12 39.37 4.12
1073 1302 2.204034 CCCCTTTGGCCTTTGGGT 59.796 61.111 20.64 0.00 38.03 4.51
1074 1303 2.216331 CCCCTTTGGCCTTTGGGTG 61.216 63.158 20.64 11.77 38.03 4.61
1075 1304 2.743060 CCTTTGGCCTTTGGGTGC 59.257 61.111 3.32 0.00 34.45 5.01
1077 1306 1.482748 CCTTTGGCCTTTGGGTGCAT 61.483 55.000 3.32 0.00 34.45 3.96
1079 1308 1.479368 TTTGGCCTTTGGGTGCATCC 61.479 55.000 9.82 9.82 34.45 3.51
1080 1309 2.283821 GGCCTTTGGGTGCATCCA 60.284 61.111 16.81 16.81 38.11 3.41
1081 1310 1.686800 GGCCTTTGGGTGCATCCAT 60.687 57.895 22.02 0.00 36.58 3.41
1082 1311 1.679559 GGCCTTTGGGTGCATCCATC 61.680 60.000 22.02 9.41 36.58 3.51
1083 1312 1.679559 GCCTTTGGGTGCATCCATCC 61.680 60.000 22.02 4.71 42.93 3.51
1092 1329 2.298163 GGTGCATCCATCCATTCATTCC 59.702 50.000 0.00 0.00 35.97 3.01
1099 1344 4.785301 TCCATCCATTCATTCCTTGTCTC 58.215 43.478 0.00 0.00 0.00 3.36
1142 1389 8.425577 TCATGTTTAATACTAGCTTGCTTCTC 57.574 34.615 0.00 0.00 0.00 2.87
1173 1426 3.134623 TGATGAGCGATTACAAGGTGGAT 59.865 43.478 0.00 0.00 0.00 3.41
1194 1447 0.460109 TGATCAACGACGGGATGCAG 60.460 55.000 8.72 0.00 0.00 4.41
1243 1496 2.964343 GACAGTTCGTCTCCTCCCT 58.036 57.895 0.00 0.00 41.81 4.20
1246 1499 0.323908 CAGTTCGTCTCCTCCCTCCT 60.324 60.000 0.00 0.00 0.00 3.69
1249 1502 2.123640 CGTCTCCTCCCTCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
1250 1503 2.695970 CGTCTCCTCCCTCCTCCCT 61.696 68.421 0.00 0.00 0.00 4.20
1252 1505 1.230650 TCTCCTCCCTCCTCCCTCA 60.231 63.158 0.00 0.00 0.00 3.86
1283 1536 3.431486 CCATCTGTCTCCTCCTGCTTAAC 60.431 52.174 0.00 0.00 0.00 2.01
1286 1539 4.673968 TCTGTCTCCTCCTGCTTAACTTA 58.326 43.478 0.00 0.00 0.00 2.24
1287 1540 5.084519 TCTGTCTCCTCCTGCTTAACTTAA 58.915 41.667 0.00 0.00 0.00 1.85
1290 1543 6.407202 TGTCTCCTCCTGCTTAACTTAATTC 58.593 40.000 0.00 0.00 0.00 2.17
1291 1544 6.213600 TGTCTCCTCCTGCTTAACTTAATTCT 59.786 38.462 0.00 0.00 0.00 2.40
1293 1546 7.065204 GTCTCCTCCTGCTTAACTTAATTCTTG 59.935 40.741 0.00 0.00 0.00 3.02
1294 1547 6.779860 TCCTCCTGCTTAACTTAATTCTTGT 58.220 36.000 0.00 0.00 0.00 3.16
1303 1556 8.487970 GCTTAACTTAATTCTTGTTTTGCTTCC 58.512 33.333 0.00 0.00 0.00 3.46
1331 1634 3.205338 TGATTGATTAGGTGCGTGATGG 58.795 45.455 0.00 0.00 0.00 3.51
1369 1676 7.043565 TCTTTCTTTCTTTGCTTGCTTGATTT 58.956 30.769 0.00 0.00 0.00 2.17
1370 1677 6.592798 TTCTTTCTTTGCTTGCTTGATTTG 57.407 33.333 0.00 0.00 0.00 2.32
1378 1689 2.888594 CTTGCTTGATTTGCCCTCATG 58.111 47.619 0.00 0.00 0.00 3.07
1391 1702 2.103941 GCCCTCATGTTTGTTCCCAAAA 59.896 45.455 0.00 0.00 41.99 2.44
1392 1703 3.244526 GCCCTCATGTTTGTTCCCAAAAT 60.245 43.478 0.00 0.00 41.99 1.82
1410 1721 6.147656 CCCAAAATAAATCTGCCTGTTTGTTC 59.852 38.462 0.00 0.00 0.00 3.18
1412 1723 7.226325 CCAAAATAAATCTGCCTGTTTGTTCAA 59.774 33.333 0.00 0.00 0.00 2.69
1413 1724 7.951530 AAATAAATCTGCCTGTTTGTTCAAG 57.048 32.000 0.00 0.00 0.00 3.02
1417 1728 2.092429 TCTGCCTGTTTGTTCAAGTCCT 60.092 45.455 0.00 0.00 0.00 3.85
1420 1731 2.034685 GCCTGTTTGTTCAAGTCCTTCC 59.965 50.000 0.00 0.00 0.00 3.46
1422 1733 3.316308 CCTGTTTGTTCAAGTCCTTCCTG 59.684 47.826 0.00 0.00 0.00 3.86
1423 1734 4.199310 CTGTTTGTTCAAGTCCTTCCTGA 58.801 43.478 0.00 0.00 0.00 3.86
1425 1736 2.930826 TGTTCAAGTCCTTCCTGACC 57.069 50.000 0.00 0.00 35.83 4.02
1426 1737 2.408565 TGTTCAAGTCCTTCCTGACCT 58.591 47.619 0.00 0.00 35.83 3.85
1427 1738 3.583228 TGTTCAAGTCCTTCCTGACCTA 58.417 45.455 0.00 0.00 35.83 3.08
1428 1739 3.323979 TGTTCAAGTCCTTCCTGACCTAC 59.676 47.826 0.00 0.00 35.83 3.18
1430 1741 3.583228 TCAAGTCCTTCCTGACCTACAA 58.417 45.455 0.00 0.00 35.83 2.41
1554 2004 4.481967 GCTTTCACCCAAACGGAAAGGG 62.482 54.545 13.34 6.58 44.70 3.95
1586 2036 3.444703 AACGTGTAGAGAGATGGATGC 57.555 47.619 0.00 0.00 0.00 3.91
1692 2149 3.483421 TCAGCTTATCCATGCCATTCTG 58.517 45.455 0.00 0.00 0.00 3.02
1745 2202 5.181690 TGCTTGTTTCTGTCAACATAACC 57.818 39.130 6.07 0.00 36.54 2.85
1749 2206 5.163302 TGTTTCTGTCAACATAACCAACG 57.837 39.130 6.07 0.00 31.48 4.10
1750 2207 4.876679 TGTTTCTGTCAACATAACCAACGA 59.123 37.500 0.00 0.00 31.48 3.85
1751 2208 5.529430 TGTTTCTGTCAACATAACCAACGAT 59.471 36.000 0.00 0.00 31.48 3.73
1753 2210 5.605564 TCTGTCAACATAACCAACGATTG 57.394 39.130 0.00 0.00 0.00 2.67
1755 2212 6.224584 TCTGTCAACATAACCAACGATTGTA 58.775 36.000 0.00 0.00 0.00 2.41
1782 2279 4.447474 ACCCCATCCATATCCATATGACA 58.553 43.478 3.65 0.00 42.05 3.58
1810 2333 3.051940 AGATGAGCATGGGAGGACTTA 57.948 47.619 0.00 0.00 0.00 2.24
1811 2334 3.596101 AGATGAGCATGGGAGGACTTAT 58.404 45.455 0.00 0.00 0.00 1.73
1812 2335 3.979347 AGATGAGCATGGGAGGACTTATT 59.021 43.478 0.00 0.00 0.00 1.40
1813 2336 5.158141 AGATGAGCATGGGAGGACTTATTA 58.842 41.667 0.00 0.00 0.00 0.98
1814 2337 5.789575 AGATGAGCATGGGAGGACTTATTAT 59.210 40.000 0.00 0.00 0.00 1.28
1815 2338 5.912149 TGAGCATGGGAGGACTTATTATT 57.088 39.130 0.00 0.00 0.00 1.40
1816 2339 7.459125 AGATGAGCATGGGAGGACTTATTATTA 59.541 37.037 0.00 0.00 0.00 0.98
1817 2340 7.574021 TGAGCATGGGAGGACTTATTATTAT 57.426 36.000 0.00 0.00 0.00 1.28
1818 2341 7.988937 TGAGCATGGGAGGACTTATTATTATT 58.011 34.615 0.00 0.00 0.00 1.40
1819 2342 9.111519 TGAGCATGGGAGGACTTATTATTATTA 57.888 33.333 0.00 0.00 0.00 0.98
1820 2343 9.959721 GAGCATGGGAGGACTTATTATTATTAA 57.040 33.333 0.00 0.00 0.00 1.40
1821 2344 9.740710 AGCATGGGAGGACTTATTATTATTAAC 57.259 33.333 0.00 0.00 0.00 2.01
1822 2345 8.957466 GCATGGGAGGACTTATTATTATTAACC 58.043 37.037 0.00 0.00 0.00 2.85
1823 2346 9.462606 CATGGGAGGACTTATTATTATTAACCC 57.537 37.037 0.00 0.00 0.00 4.11
1824 2347 8.823810 TGGGAGGACTTATTATTATTAACCCT 57.176 34.615 0.00 0.00 33.18 4.34
1825 2348 8.665906 TGGGAGGACTTATTATTATTAACCCTG 58.334 37.037 0.00 0.00 33.18 4.45
1826 2349 7.610692 GGGAGGACTTATTATTATTAACCCTGC 59.389 40.741 0.00 0.00 0.00 4.85
1848 2378 9.208022 CCTGCATTATTATATGATATGGGTACG 57.792 37.037 0.00 0.00 0.00 3.67
1849 2379 9.208022 CTGCATTATTATATGATATGGGTACGG 57.792 37.037 0.00 0.00 0.00 4.02
1850 2380 8.710239 TGCATTATTATATGATATGGGTACGGT 58.290 33.333 0.00 0.00 0.00 4.83
1886 2419 1.064906 CCACATCACAATGGCCTCTCT 60.065 52.381 3.32 0.00 37.19 3.10
1899 2432 2.486191 GGCCTCTCTCTCTCTCTCTCTG 60.486 59.091 0.00 0.00 0.00 3.35
1932 2476 1.388065 CCAACCAACAAGTTGCCGGA 61.388 55.000 5.05 0.00 44.71 5.14
1935 2479 0.818040 ACCAACAAGTTGCCGGAGAC 60.818 55.000 5.05 1.74 39.16 3.36
1963 2508 2.652348 ACAGATTTGACCAATACCCCCA 59.348 45.455 0.00 0.00 0.00 4.96
1968 2513 5.790096 AGATTTGACCAATACCCCCAAAAAT 59.210 36.000 0.00 0.00 31.63 1.82
1970 2515 7.459444 AGATTTGACCAATACCCCCAAAAATAA 59.541 33.333 0.00 0.00 31.63 1.40
1972 2517 7.575499 TTGACCAATACCCCCAAAAATAAAT 57.425 32.000 0.00 0.00 0.00 1.40
1973 2518 6.951971 TGACCAATACCCCCAAAAATAAATG 58.048 36.000 0.00 0.00 0.00 2.32
1974 2519 6.730977 TGACCAATACCCCCAAAAATAAATGA 59.269 34.615 0.00 0.00 0.00 2.57
1993 2551 3.076621 TGATGTCACTCATGCTTTCACC 58.923 45.455 0.00 0.00 36.83 4.02
2024 2582 8.904099 ATTCTTGCAAGTTTAGTACTACAACT 57.096 30.769 25.19 17.52 35.54 3.16
2025 2583 9.991906 ATTCTTGCAAGTTTAGTACTACAACTA 57.008 29.630 25.19 10.36 35.54 2.24
2026 2584 8.807667 TCTTGCAAGTTTAGTACTACAACTAC 57.192 34.615 25.19 17.72 35.54 2.73
2028 2586 8.583810 TTGCAAGTTTAGTACTACAACTACTG 57.416 34.615 20.85 18.22 35.54 2.74
2067 3199 4.207165 CTGTCAAGTTTTCTCTTCCCCAA 58.793 43.478 0.00 0.00 0.00 4.12
2068 3200 3.951680 TGTCAAGTTTTCTCTTCCCCAAC 59.048 43.478 0.00 0.00 0.00 3.77
2069 3201 3.318275 GTCAAGTTTTCTCTTCCCCAACC 59.682 47.826 0.00 0.00 0.00 3.77
2070 3202 2.628178 CAAGTTTTCTCTTCCCCAACCC 59.372 50.000 0.00 0.00 0.00 4.11
2072 3204 0.111639 TTTTCTCTTCCCCAACCCCG 59.888 55.000 0.00 0.00 0.00 5.73
2073 3205 2.420466 TTTCTCTTCCCCAACCCCGC 62.420 60.000 0.00 0.00 0.00 6.13
2074 3206 3.646715 CTCTTCCCCAACCCCGCA 61.647 66.667 0.00 0.00 0.00 5.69
2075 3207 3.179339 TCTTCCCCAACCCCGCAA 61.179 61.111 0.00 0.00 0.00 4.85
2076 3208 2.203567 CTTCCCCAACCCCGCAAA 60.204 61.111 0.00 0.00 0.00 3.68
2077 3209 1.834822 CTTCCCCAACCCCGCAAAA 60.835 57.895 0.00 0.00 0.00 2.44
2078 3210 1.382695 TTCCCCAACCCCGCAAAAA 60.383 52.632 0.00 0.00 0.00 1.94
2108 3240 5.598416 AAAAAGTTTTCTCTTCCCCACTG 57.402 39.130 0.32 0.00 0.00 3.66
2109 3241 2.278332 AGTTTTCTCTTCCCCACTGC 57.722 50.000 0.00 0.00 0.00 4.40
2110 3242 1.494721 AGTTTTCTCTTCCCCACTGCA 59.505 47.619 0.00 0.00 0.00 4.41
2176 3366 3.670627 GCGAGCAACACTTATTTTGGGAG 60.671 47.826 0.00 0.00 0.00 4.30
2177 3367 3.119849 CGAGCAACACTTATTTTGGGAGG 60.120 47.826 0.00 0.00 0.00 4.30
2178 3368 3.826729 GAGCAACACTTATTTTGGGAGGT 59.173 43.478 0.00 0.00 0.00 3.85
2179 3369 3.573967 AGCAACACTTATTTTGGGAGGTG 59.426 43.478 0.00 0.00 0.00 4.00
2180 3370 3.306019 GCAACACTTATTTTGGGAGGTGG 60.306 47.826 0.00 0.00 0.00 4.61
2181 3371 3.169512 ACACTTATTTTGGGAGGTGGG 57.830 47.619 0.00 0.00 0.00 4.61
2182 3372 1.824852 CACTTATTTTGGGAGGTGGGC 59.175 52.381 0.00 0.00 0.00 5.36
2183 3373 1.716503 ACTTATTTTGGGAGGTGGGCT 59.283 47.619 0.00 0.00 0.00 5.19
2184 3374 2.111792 ACTTATTTTGGGAGGTGGGCTT 59.888 45.455 0.00 0.00 0.00 4.35
2185 3375 3.335484 ACTTATTTTGGGAGGTGGGCTTA 59.665 43.478 0.00 0.00 0.00 3.09
2186 3376 4.016572 ACTTATTTTGGGAGGTGGGCTTAT 60.017 41.667 0.00 0.00 0.00 1.73
2187 3377 5.194942 ACTTATTTTGGGAGGTGGGCTTATA 59.805 40.000 0.00 0.00 0.00 0.98
2268 3458 4.588106 TGATCCTTCAATCTGCTCTCTAGG 59.412 45.833 0.00 0.00 0.00 3.02
2274 3464 6.267471 CCTTCAATCTGCTCTCTAGGACTTAT 59.733 42.308 0.00 0.00 0.00 1.73
2503 3726 4.041723 CAGGTTTCATCGTTTGTTTGTCC 58.958 43.478 0.00 0.00 0.00 4.02
2577 3804 2.357952 GGAGCCCAATGTTCGGTAAATC 59.642 50.000 0.00 0.00 0.00 2.17
2639 3907 2.765699 ACCAACTGAAGCACCACATTTT 59.234 40.909 0.00 0.00 0.00 1.82
2652 3920 3.181476 ACCACATTTTTGCTGTTGTCCTC 60.181 43.478 0.00 0.00 0.00 3.71
2656 3924 1.032014 TTTTGCTGTTGTCCTCCTGC 58.968 50.000 0.00 0.00 0.00 4.85
2659 3927 2.331132 GCTGTTGTCCTCCTGCTGC 61.331 63.158 0.00 0.00 0.00 5.25
2660 3928 1.374190 CTGTTGTCCTCCTGCTGCT 59.626 57.895 0.00 0.00 0.00 4.24
2661 3929 0.954449 CTGTTGTCCTCCTGCTGCTG 60.954 60.000 0.00 0.00 0.00 4.41
2662 3930 2.033141 TTGTCCTCCTGCTGCTGC 59.967 61.111 8.89 8.89 40.20 5.25
2663 3931 2.523285 TTGTCCTCCTGCTGCTGCT 61.523 57.895 17.00 0.00 40.48 4.24
2664 3932 2.436292 GTCCTCCTGCTGCTGCTG 60.436 66.667 17.00 15.58 40.48 4.41
2665 3933 4.405671 TCCTCCTGCTGCTGCTGC 62.406 66.667 22.51 22.51 40.48 5.25
2806 4074 7.093945 TGCCTATGAAAATAAAGTCAAAGGTCC 60.094 37.037 0.00 0.00 0.00 4.46
2819 4087 2.747446 CAAAGGTCCGATTTGTACCAGG 59.253 50.000 0.00 0.00 35.64 4.45
2959 4231 1.939082 CGGAGGAGGAGGAGGAGGAA 61.939 65.000 0.00 0.00 0.00 3.36
3058 4334 2.742428 AACTGGTGGATGGATGGATG 57.258 50.000 0.00 0.00 0.00 3.51
3059 4335 0.184451 ACTGGTGGATGGATGGATGC 59.816 55.000 0.00 0.00 0.00 3.91
3060 4336 0.184211 CTGGTGGATGGATGGATGCA 59.816 55.000 0.00 0.00 0.00 3.96
3061 4337 0.854908 TGGTGGATGGATGGATGCAT 59.145 50.000 0.00 0.00 41.76 3.96
3062 4338 1.254026 GGTGGATGGATGGATGCATG 58.746 55.000 2.46 0.00 39.04 4.06
3063 4339 1.254026 GTGGATGGATGGATGCATGG 58.746 55.000 2.46 0.00 39.04 3.66
3064 4340 1.150872 TGGATGGATGGATGCATGGA 58.849 50.000 2.46 0.00 39.04 3.41
3065 4341 1.714217 TGGATGGATGGATGCATGGAT 59.286 47.619 2.46 0.00 39.04 3.41
3094 4370 5.105554 AGCTCAGTCAGTAACTCAGTAATGG 60.106 44.000 0.00 0.00 35.45 3.16
3196 4478 4.515361 AGAAAGTCATCAGCCATCTCAAG 58.485 43.478 0.00 0.00 0.00 3.02
3213 4503 3.230976 TCAAGTCAGCTCCACTAGTTCA 58.769 45.455 0.00 0.00 0.00 3.18
3220 4510 2.899900 AGCTCCACTAGTTCATGTGTCA 59.100 45.455 0.00 0.00 32.76 3.58
3225 4515 3.859961 CCACTAGTTCATGTGTCATCGTC 59.140 47.826 0.00 0.00 32.76 4.20
3228 4518 2.596452 AGTTCATGTGTCATCGTCGTC 58.404 47.619 0.00 0.00 0.00 4.20
3231 4521 0.907837 CATGTGTCATCGTCGTCGTC 59.092 55.000 1.33 0.00 38.33 4.20
3233 4523 2.202260 TGTCATCGTCGTCGTCGC 60.202 61.111 7.01 0.00 38.33 5.19
3234 4524 2.943034 GTCATCGTCGTCGTCGCC 60.943 66.667 7.01 0.00 38.33 5.54
3243 4533 4.450122 GTCGTCGCCGTCGTGCTA 62.450 66.667 3.41 0.00 36.96 3.49
3272 4568 6.644592 GCTGTGAATAACTTGCCATTTGTTTA 59.355 34.615 0.00 0.00 0.00 2.01
3305 4601 5.106869 CCATTTGCAGTTCATGTTTCCATTG 60.107 40.000 0.00 0.00 0.00 2.82
3315 4611 4.017591 TCATGTTTCCATTGTAGGGGATGT 60.018 41.667 0.00 0.00 32.15 3.06
3316 4612 5.192722 TCATGTTTCCATTGTAGGGGATGTA 59.807 40.000 0.00 0.00 32.15 2.29
3317 4613 5.725551 TGTTTCCATTGTAGGGGATGTAT 57.274 39.130 0.00 0.00 32.15 2.29
3318 4614 5.445069 TGTTTCCATTGTAGGGGATGTATG 58.555 41.667 0.00 0.00 32.15 2.39
3319 4615 5.044476 TGTTTCCATTGTAGGGGATGTATGT 60.044 40.000 0.00 0.00 32.15 2.29
3336 4632 7.041098 GGATGTATGTTCTGTTCTGTTCTGTTT 60.041 37.037 0.00 0.00 0.00 2.83
3363 4663 8.450578 TTCATTTTCAGTTCATGTTACTGTCT 57.549 30.769 21.61 9.23 42.77 3.41
3364 4664 7.864686 TCATTTTCAGTTCATGTTACTGTCTG 58.135 34.615 21.61 16.34 42.77 3.51
3365 4665 7.498900 TCATTTTCAGTTCATGTTACTGTCTGT 59.501 33.333 21.61 10.51 42.77 3.41
3366 4666 8.773645 CATTTTCAGTTCATGTTACTGTCTGTA 58.226 33.333 21.61 7.41 42.77 2.74
3367 4667 8.725405 TTTTCAGTTCATGTTACTGTCTGTAA 57.275 30.769 21.61 11.37 42.77 2.41
3371 4671 8.367911 TCAGTTCATGTTACTGTCTGTAATTCT 58.632 33.333 21.61 0.00 42.36 2.40
3373 4673 8.150945 AGTTCATGTTACTGTCTGTAATTCTGT 58.849 33.333 5.71 0.00 42.36 3.41
3376 4676 8.988934 TCATGTTACTGTCTGTAATTCTGTTTC 58.011 33.333 5.71 0.00 42.36 2.78
3377 4677 8.993121 CATGTTACTGTCTGTAATTCTGTTTCT 58.007 33.333 5.71 0.00 42.36 2.52
3378 4678 8.365399 TGTTACTGTCTGTAATTCTGTTTCTG 57.635 34.615 5.71 0.00 42.36 3.02
3380 4680 8.827677 GTTACTGTCTGTAATTCTGTTTCTGTT 58.172 33.333 5.71 0.00 42.36 3.16
3381 4681 7.251704 ACTGTCTGTAATTCTGTTTCTGTTG 57.748 36.000 0.00 0.00 0.00 3.33
3382 4682 7.047891 ACTGTCTGTAATTCTGTTTCTGTTGA 58.952 34.615 0.00 0.00 0.00 3.18
3384 4684 9.208022 CTGTCTGTAATTCTGTTTCTGTTGATA 57.792 33.333 0.00 0.00 0.00 2.15
3385 4685 9.554395 TGTCTGTAATTCTGTTTCTGTTGATAA 57.446 29.630 0.00 0.00 0.00 1.75
3409 4709 7.585884 ATCATCTCATCTCAGGGGAATTTAT 57.414 36.000 0.00 0.00 0.00 1.40
3422 4722 5.072741 GGGGAATTTATATCTGCTCTGCAA 58.927 41.667 0.00 0.00 38.41 4.08
3423 4723 5.713861 GGGGAATTTATATCTGCTCTGCAAT 59.286 40.000 0.00 0.00 38.41 3.56
3428 4728 7.828508 ATTTATATCTGCTCTGCAATTCCAA 57.171 32.000 0.00 0.00 38.41 3.53
3435 4735 3.192001 TGCTCTGCAATTCCAACTGAATC 59.808 43.478 0.00 0.00 42.97 2.52
3438 4738 3.507233 TCTGCAATTCCAACTGAATCCAC 59.493 43.478 0.00 0.00 42.97 4.02
3440 4740 3.256383 TGCAATTCCAACTGAATCCACAG 59.744 43.478 0.00 0.00 42.97 3.66
3450 4750 3.539604 CTGAATCCACAGTTCCATCCTC 58.460 50.000 0.00 0.00 33.73 3.71
3451 4751 2.912295 TGAATCCACAGTTCCATCCTCA 59.088 45.455 0.00 0.00 0.00 3.86
3453 4753 3.641434 ATCCACAGTTCCATCCTCAAG 57.359 47.619 0.00 0.00 0.00 3.02
3458 4758 4.022849 CCACAGTTCCATCCTCAAGAAAAC 60.023 45.833 0.00 0.00 0.00 2.43
3459 4759 4.580167 CACAGTTCCATCCTCAAGAAAACA 59.420 41.667 0.00 0.00 0.00 2.83
3460 4760 5.242393 CACAGTTCCATCCTCAAGAAAACAT 59.758 40.000 0.00 0.00 0.00 2.71
3461 4761 5.242393 ACAGTTCCATCCTCAAGAAAACATG 59.758 40.000 0.00 0.00 0.00 3.21
3462 4762 5.242393 CAGTTCCATCCTCAAGAAAACATGT 59.758 40.000 0.00 0.00 0.00 3.21
3463 4763 6.430925 CAGTTCCATCCTCAAGAAAACATGTA 59.569 38.462 0.00 0.00 0.00 2.29
3464 4764 6.431234 AGTTCCATCCTCAAGAAAACATGTAC 59.569 38.462 0.00 0.00 0.00 2.90
3468 4768 7.038302 TCCATCCTCAAGAAAACATGTACTACT 60.038 37.037 0.00 0.00 0.00 2.57
3483 4783 6.392625 TGTACTACTACAGAGATTGCATCC 57.607 41.667 0.00 0.00 0.00 3.51
3520 4879 5.463286 TGAATTTGAATCATCAGCACACAC 58.537 37.500 0.00 0.00 36.78 3.82
3521 4880 5.009811 TGAATTTGAATCATCAGCACACACA 59.990 36.000 0.00 0.00 36.78 3.72
3524 4883 3.742385 TGAATCATCAGCACACACAAGA 58.258 40.909 0.00 0.00 0.00 3.02
3650 5048 4.735132 GTGCTCCTGTACCGCGCA 62.735 66.667 8.75 0.00 34.52 6.09
3652 5050 4.436998 GCTCCTGTACCGCGCAGT 62.437 66.667 8.75 4.34 32.41 4.40
3654 5052 3.282745 CTCCTGTACCGCGCAGTGT 62.283 63.158 8.75 3.52 35.45 3.55
3713 5120 4.673298 TCGGCGCGGAAGAAGCAA 62.673 61.111 15.97 0.00 37.89 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.976641 TGTCTCGTTTCCTGCTGGAT 59.023 50.000 13.72 0.00 42.81 3.41
5 6 0.445436 CAGCATGTCTCGTTTCCTGC 59.555 55.000 0.00 0.00 0.00 4.85
9 10 3.257393 AGTCATCAGCATGTCTCGTTTC 58.743 45.455 0.00 0.00 37.40 2.78
77 78 1.198094 TCCCGCTTGATGGAAGGACA 61.198 55.000 0.00 0.00 31.56 4.02
78 79 0.462759 CTCCCGCTTGATGGAAGGAC 60.463 60.000 0.00 0.00 31.56 3.85
117 118 4.955774 ACGGTTGTCGGTGGCGTC 62.956 66.667 0.00 0.00 44.45 5.19
122 123 2.663852 GGTCCACGGTTGTCGGTG 60.664 66.667 0.00 0.00 44.45 4.94
138 139 4.742201 CGTGTCTGACCGGCCTGG 62.742 72.222 0.00 11.48 46.41 4.45
169 170 2.352388 GCTAAATTACACGTGAGGCCA 58.648 47.619 25.01 0.72 0.00 5.36
197 198 4.776322 CCCCTCGCATTCACGCCA 62.776 66.667 0.00 0.00 0.00 5.69
203 204 1.895707 CATCTGGCCCCTCGCATTC 60.896 63.158 0.00 0.00 40.31 2.67
239 240 6.451064 AAATTAATTCATCCACCGACCTTC 57.549 37.500 0.10 0.00 0.00 3.46
260 261 2.765699 GCTAAATGGCCCCTCATGAAAA 59.234 45.455 0.00 0.00 0.00 2.29
286 287 0.461961 GGATGGCTCTAGCGTCTTGT 59.538 55.000 0.00 0.00 43.26 3.16
308 309 1.027357 ATGGAAATCAGCCGATGCAC 58.973 50.000 0.00 0.00 41.13 4.57
367 374 0.888619 GATGGACGAGTCTGGTGACA 59.111 55.000 3.09 0.00 45.20 3.58
373 380 1.339610 GAGGATGGATGGACGAGTCTG 59.660 57.143 3.09 0.00 0.00 3.51
380 387 4.993028 AGTAGAGTAGAGGATGGATGGAC 58.007 47.826 0.00 0.00 0.00 4.02
402 409 6.685116 GCCGAAAGAGACTAGTACTCCTACTA 60.685 46.154 0.00 0.00 34.79 1.82
407 414 3.015327 TGCCGAAAGAGACTAGTACTCC 58.985 50.000 0.00 0.00 35.27 3.85
408 415 4.082895 TGTTGCCGAAAGAGACTAGTACTC 60.083 45.833 0.00 12.00 34.95 2.59
418 425 3.769536 ACTTGTTTTGTTGCCGAAAGAG 58.230 40.909 0.00 0.00 0.00 2.85
420 427 4.243642 CAACTTGTTTTGTTGCCGAAAG 57.756 40.909 0.00 0.00 38.36 2.62
438 445 8.810652 TTATCTGGTTGAAATAAAAGTGCAAC 57.189 30.769 0.00 0.00 38.40 4.17
439 446 9.474920 CTTTATCTGGTTGAAATAAAAGTGCAA 57.525 29.630 0.00 0.00 0.00 4.08
440 447 8.855110 TCTTTATCTGGTTGAAATAAAAGTGCA 58.145 29.630 0.00 0.00 0.00 4.57
441 448 9.860898 ATCTTTATCTGGTTGAAATAAAAGTGC 57.139 29.630 0.00 0.00 0.00 4.40
469 476 9.535878 ACGCACTTCCTTTTCAATTTTATTTTA 57.464 25.926 0.00 0.00 0.00 1.52
486 496 1.063174 GAGCAATGATCACGCACTTCC 59.937 52.381 18.43 0.00 0.00 3.46
496 506 2.200067 CACGGAGACAGAGCAATGATC 58.800 52.381 0.00 0.00 0.00 2.92
499 509 0.036952 ACCACGGAGACAGAGCAATG 60.037 55.000 0.00 0.00 0.00 2.82
618 633 9.847224 GGTTTGGATGAAGGAAGAACTATATAA 57.153 33.333 0.00 0.00 0.00 0.98
625 640 5.064441 CATGGTTTGGATGAAGGAAGAAC 57.936 43.478 0.00 0.00 0.00 3.01
643 658 0.179037 ACGTCCAGATGCATCCATGG 60.179 55.000 22.99 22.99 0.00 3.66
644 659 2.224137 ACTACGTCCAGATGCATCCATG 60.224 50.000 23.06 15.22 0.00 3.66
646 661 1.485124 ACTACGTCCAGATGCATCCA 58.515 50.000 23.06 4.77 0.00 3.41
647 662 2.604046 AACTACGTCCAGATGCATCC 57.396 50.000 23.06 6.84 0.00 3.51
691 708 2.059541 GTCTGGAAAACTTCGTCCGAG 58.940 52.381 0.00 0.00 36.65 4.63
694 711 1.145803 CCGTCTGGAAAACTTCGTCC 58.854 55.000 0.00 0.00 37.49 4.79
698 715 1.346722 TCCCTCCGTCTGGAAAACTTC 59.653 52.381 0.00 0.00 45.87 3.01
700 717 0.977395 CTCCCTCCGTCTGGAAAACT 59.023 55.000 0.00 0.00 45.87 2.66
708 725 1.198713 TACGTCTACTCCCTCCGTCT 58.801 55.000 0.00 0.00 33.32 4.18
736 762 9.282569 AGAAATGAATAGAAATGGCTTAGCTAG 57.717 33.333 3.59 0.00 0.00 3.42
776 802 5.799213 ACTCCCTCTTGTTCAGAAATACTG 58.201 41.667 0.00 0.00 46.97 2.74
784 931 9.319143 CAATAAATACTACTCCCTCTTGTTCAG 57.681 37.037 0.00 0.00 0.00 3.02
789 936 9.265901 CACATCAATAAATACTACTCCCTCTTG 57.734 37.037 0.00 0.00 0.00 3.02
792 939 7.171678 GCACACATCAATAAATACTACTCCCTC 59.828 40.741 0.00 0.00 0.00 4.30
793 940 6.992715 GCACACATCAATAAATACTACTCCCT 59.007 38.462 0.00 0.00 0.00 4.20
794 941 6.765989 TGCACACATCAATAAATACTACTCCC 59.234 38.462 0.00 0.00 0.00 4.30
816 1006 2.241941 TGAGGGCCAATCTTATCTTGCA 59.758 45.455 6.18 0.00 0.00 4.08
837 1027 1.707427 AGAAAAGAGGAGTGGTGGCAT 59.293 47.619 0.00 0.00 0.00 4.40
905 1100 4.039004 CAGAGAGAGAGAGAGAGAGAGAGG 59.961 54.167 0.00 0.00 0.00 3.69
911 1106 2.571202 TGCACAGAGAGAGAGAGAGAGA 59.429 50.000 0.00 0.00 0.00 3.10
916 1111 3.758023 TCTCTTTGCACAGAGAGAGAGAG 59.242 47.826 25.21 8.97 43.72 3.20
928 1123 3.003793 GGTGGTTCTTTCTCTCTTTGCAC 59.996 47.826 0.00 0.00 0.00 4.57
930 1125 3.481453 AGGTGGTTCTTTCTCTCTTTGC 58.519 45.455 0.00 0.00 0.00 3.68
931 1126 5.611374 TGTAGGTGGTTCTTTCTCTCTTTG 58.389 41.667 0.00 0.00 0.00 2.77
932 1127 5.888982 TGTAGGTGGTTCTTTCTCTCTTT 57.111 39.130 0.00 0.00 0.00 2.52
933 1128 5.888982 TTGTAGGTGGTTCTTTCTCTCTT 57.111 39.130 0.00 0.00 0.00 2.85
934 1129 5.130477 TGTTTGTAGGTGGTTCTTTCTCTCT 59.870 40.000 0.00 0.00 0.00 3.10
935 1130 5.365619 TGTTTGTAGGTGGTTCTTTCTCTC 58.634 41.667 0.00 0.00 0.00 3.20
936 1131 5.130477 TCTGTTTGTAGGTGGTTCTTTCTCT 59.870 40.000 0.00 0.00 0.00 3.10
937 1132 5.236695 GTCTGTTTGTAGGTGGTTCTTTCTC 59.763 44.000 0.00 0.00 0.00 2.87
938 1133 5.123936 GTCTGTTTGTAGGTGGTTCTTTCT 58.876 41.667 0.00 0.00 0.00 2.52
939 1134 4.879545 TGTCTGTTTGTAGGTGGTTCTTTC 59.120 41.667 0.00 0.00 0.00 2.62
940 1135 4.850680 TGTCTGTTTGTAGGTGGTTCTTT 58.149 39.130 0.00 0.00 0.00 2.52
941 1136 4.451900 CTGTCTGTTTGTAGGTGGTTCTT 58.548 43.478 0.00 0.00 0.00 2.52
942 1137 3.181454 CCTGTCTGTTTGTAGGTGGTTCT 60.181 47.826 0.00 0.00 0.00 3.01
943 1138 3.139077 CCTGTCTGTTTGTAGGTGGTTC 58.861 50.000 0.00 0.00 0.00 3.62
944 1139 2.748465 GCCTGTCTGTTTGTAGGTGGTT 60.748 50.000 0.00 0.00 32.85 3.67
945 1140 1.202770 GCCTGTCTGTTTGTAGGTGGT 60.203 52.381 0.00 0.00 32.85 4.16
946 1141 1.202758 TGCCTGTCTGTTTGTAGGTGG 60.203 52.381 0.00 0.00 32.85 4.61
947 1142 2.146342 CTGCCTGTCTGTTTGTAGGTG 58.854 52.381 0.00 0.00 32.85 4.00
950 1145 1.611673 CCCCTGCCTGTCTGTTTGTAG 60.612 57.143 0.00 0.00 0.00 2.74
951 1146 0.400213 CCCCTGCCTGTCTGTTTGTA 59.600 55.000 0.00 0.00 0.00 2.41
955 1150 1.763770 CTTCCCCTGCCTGTCTGTT 59.236 57.895 0.00 0.00 0.00 3.16
956 1151 2.900106 GCTTCCCCTGCCTGTCTGT 61.900 63.158 0.00 0.00 0.00 3.41
957 1152 2.045536 GCTTCCCCTGCCTGTCTG 60.046 66.667 0.00 0.00 0.00 3.51
958 1153 2.530151 TGCTTCCCCTGCCTGTCT 60.530 61.111 0.00 0.00 0.00 3.41
959 1154 2.045536 CTGCTTCCCCTGCCTGTC 60.046 66.667 0.00 0.00 0.00 3.51
960 1155 2.530151 TCTGCTTCCCCTGCCTGT 60.530 61.111 0.00 0.00 0.00 4.00
961 1156 2.271497 CTCTGCTTCCCCTGCCTG 59.729 66.667 0.00 0.00 0.00 4.85
967 1162 1.077858 CTCCTTGCTCTGCTTCCCC 60.078 63.158 0.00 0.00 0.00 4.81
988 1183 3.517500 GGGGAAGACATCTCACTTCTTCT 59.482 47.826 9.72 0.00 43.24 2.85
996 1191 1.361204 TGCTTGGGGAAGACATCTCA 58.639 50.000 0.00 0.00 0.00 3.27
997 1192 2.363683 CTTGCTTGGGGAAGACATCTC 58.636 52.381 0.00 0.00 42.37 2.75
998 1193 1.615384 GCTTGCTTGGGGAAGACATCT 60.615 52.381 1.66 0.00 42.37 2.90
1042 1271 0.193574 AAGGGGAGGAGGACTGACAA 59.806 55.000 0.00 0.00 0.00 3.18
1047 1276 1.925972 GCCAAAGGGGAGGAGGACT 60.926 63.158 0.00 0.00 40.01 3.85
1050 1279 1.804530 AAAGGCCAAAGGGGAGGAGG 61.805 60.000 5.01 0.00 40.01 4.30
1054 1283 1.610379 CCCAAAGGCCAAAGGGGAG 60.610 63.158 16.46 0.00 41.49 4.30
1055 1284 2.408203 ACCCAAAGGCCAAAGGGGA 61.408 57.895 24.90 0.00 45.83 4.81
1056 1285 2.204034 ACCCAAAGGCCAAAGGGG 59.796 61.111 24.90 21.28 45.83 4.79
1059 1288 0.037046 GATGCACCCAAAGGCCAAAG 60.037 55.000 5.01 0.00 36.11 2.77
1060 1289 1.479368 GGATGCACCCAAAGGCCAAA 61.479 55.000 5.01 0.00 36.11 3.28
1062 1291 2.283821 GGATGCACCCAAAGGCCA 60.284 61.111 5.01 0.00 36.11 5.36
1063 1292 1.679559 GATGGATGCACCCAAAGGCC 61.680 60.000 2.29 0.00 40.04 5.19
1064 1293 1.679559 GGATGGATGCACCCAAAGGC 61.680 60.000 2.29 0.00 40.04 4.35
1065 1294 0.324552 TGGATGGATGCACCCAAAGG 60.325 55.000 2.29 0.00 40.04 3.11
1066 1295 1.784358 ATGGATGGATGCACCCAAAG 58.216 50.000 2.29 0.00 40.04 2.77
1070 1299 2.005370 ATGAATGGATGGATGCACCC 57.995 50.000 0.00 0.00 38.00 4.61
1071 1300 2.298163 GGAATGAATGGATGGATGCACC 59.702 50.000 0.00 0.00 39.54 5.01
1072 1301 3.228453 AGGAATGAATGGATGGATGCAC 58.772 45.455 0.00 0.00 0.00 4.57
1073 1302 3.605726 AGGAATGAATGGATGGATGCA 57.394 42.857 0.00 0.00 0.00 3.96
1074 1303 3.640029 ACAAGGAATGAATGGATGGATGC 59.360 43.478 0.00 0.00 0.00 3.91
1075 1304 5.138276 AGACAAGGAATGAATGGATGGATG 58.862 41.667 0.00 0.00 0.00 3.51
1077 1306 4.476113 AGAGACAAGGAATGAATGGATGGA 59.524 41.667 0.00 0.00 0.00 3.41
1079 1308 5.651139 ACAAGAGACAAGGAATGAATGGATG 59.349 40.000 0.00 0.00 0.00 3.51
1080 1309 5.651139 CACAAGAGACAAGGAATGAATGGAT 59.349 40.000 0.00 0.00 0.00 3.41
1081 1310 5.005740 CACAAGAGACAAGGAATGAATGGA 58.994 41.667 0.00 0.00 0.00 3.41
1082 1311 5.005740 TCACAAGAGACAAGGAATGAATGG 58.994 41.667 0.00 0.00 0.00 3.16
1083 1312 5.123502 CCTCACAAGAGACAAGGAATGAATG 59.876 44.000 0.00 0.00 44.98 2.67
1084 1313 5.013495 TCCTCACAAGAGACAAGGAATGAAT 59.987 40.000 0.00 0.00 44.98 2.57
1092 1329 5.059161 TCAACAATCCTCACAAGAGACAAG 58.941 41.667 0.00 0.00 44.98 3.16
1099 1344 6.263516 ACATGAATCAACAATCCTCACAAG 57.736 37.500 0.00 0.00 0.00 3.16
1142 1389 5.532557 TGTAATCGCTCATCATCCTACAAG 58.467 41.667 0.00 0.00 0.00 3.16
1173 1426 1.410882 TGCATCCCGTCGTTGATCATA 59.589 47.619 0.00 0.00 0.00 2.15
1194 1447 1.343465 TGGAAGTGGACGAAGAACTCC 59.657 52.381 0.00 0.00 0.00 3.85
1238 1491 2.041405 GGGTGAGGGAGGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
1239 1492 2.540910 AGGGTGAGGGAGGAGGGA 60.541 66.667 0.00 0.00 0.00 4.20
1240 1493 2.041405 GAGGGTGAGGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
1243 1496 1.585651 GGAGAGAGGGTGAGGGAGGA 61.586 65.000 0.00 0.00 0.00 3.71
1246 1499 0.263172 GATGGAGAGAGGGTGAGGGA 59.737 60.000 0.00 0.00 0.00 4.20
1249 1502 2.031120 GACAGATGGAGAGAGGGTGAG 58.969 57.143 0.00 0.00 0.00 3.51
1250 1503 1.643286 AGACAGATGGAGAGAGGGTGA 59.357 52.381 0.00 0.00 0.00 4.02
1252 1505 1.063266 GGAGACAGATGGAGAGAGGGT 60.063 57.143 0.00 0.00 0.00 4.34
1283 1536 8.647143 TCAAAGGAAGCAAAACAAGAATTAAG 57.353 30.769 0.00 0.00 0.00 1.85
1286 1539 7.769970 TCAATCAAAGGAAGCAAAACAAGAATT 59.230 29.630 0.00 0.00 0.00 2.17
1287 1540 7.274447 TCAATCAAAGGAAGCAAAACAAGAAT 58.726 30.769 0.00 0.00 0.00 2.40
1290 1543 7.225145 TCAATCAATCAAAGGAAGCAAAACAAG 59.775 33.333 0.00 0.00 0.00 3.16
1291 1544 7.046652 TCAATCAATCAAAGGAAGCAAAACAA 58.953 30.769 0.00 0.00 0.00 2.83
1293 1546 7.662604 ATCAATCAATCAAAGGAAGCAAAAC 57.337 32.000 0.00 0.00 0.00 2.43
1294 1547 9.426837 CTAATCAATCAATCAAAGGAAGCAAAA 57.573 29.630 0.00 0.00 0.00 2.44
1303 1556 5.740569 CACGCACCTAATCAATCAATCAAAG 59.259 40.000 0.00 0.00 0.00 2.77
1369 1676 0.187117 TGGGAACAAACATGAGGGCA 59.813 50.000 0.00 0.00 37.44 5.36
1370 1677 3.050089 TGGGAACAAACATGAGGGC 57.950 52.632 0.00 0.00 37.44 5.19
1391 1702 6.294731 GGACTTGAACAAACAGGCAGATTTAT 60.295 38.462 0.00 0.00 0.00 1.40
1392 1703 5.009610 GGACTTGAACAAACAGGCAGATTTA 59.990 40.000 0.00 0.00 0.00 1.40
1410 1721 4.559862 ATTGTAGGTCAGGAAGGACTTG 57.440 45.455 0.00 0.00 37.91 3.16
1412 1723 4.684724 TGTATTGTAGGTCAGGAAGGACT 58.315 43.478 0.00 0.00 37.91 3.85
1413 1724 5.416271 TTGTATTGTAGGTCAGGAAGGAC 57.584 43.478 0.00 0.00 37.06 3.85
1417 1728 5.104527 CCTCCATTGTATTGTAGGTCAGGAA 60.105 44.000 0.00 0.00 0.00 3.36
1420 1731 5.614324 TCCTCCATTGTATTGTAGGTCAG 57.386 43.478 0.00 0.00 0.00 3.51
1422 1733 6.174720 TCATCCTCCATTGTATTGTAGGTC 57.825 41.667 0.00 0.00 0.00 3.85
1423 1734 6.158695 AGTTCATCCTCCATTGTATTGTAGGT 59.841 38.462 0.00 0.00 0.00 3.08
1425 1736 7.275183 TGAGTTCATCCTCCATTGTATTGTAG 58.725 38.462 0.00 0.00 0.00 2.74
1426 1737 7.194112 TGAGTTCATCCTCCATTGTATTGTA 57.806 36.000 0.00 0.00 0.00 2.41
1427 1738 6.065976 TGAGTTCATCCTCCATTGTATTGT 57.934 37.500 0.00 0.00 0.00 2.71
1428 1739 5.008415 GCTGAGTTCATCCTCCATTGTATTG 59.992 44.000 0.00 0.00 0.00 1.90
1430 1741 4.411540 AGCTGAGTTCATCCTCCATTGTAT 59.588 41.667 0.00 0.00 0.00 2.29
1473 1883 8.689251 AAAGAGAAGCTACTTTTTGTTTGTTC 57.311 30.769 7.38 0.00 33.36 3.18
1519 1957 3.557054 GGTGAAAGCAGAGGTGTGTATGA 60.557 47.826 0.00 0.00 0.00 2.15
1554 2004 3.374745 TCTACACGTTTCGGTTCAGAAC 58.625 45.455 4.52 4.52 0.00 3.01
1586 2036 0.835941 AGCAGCTAGATGTGGAAGGG 59.164 55.000 10.15 0.00 0.00 3.95
1670 2127 3.502595 CAGAATGGCATGGATAAGCTGAG 59.497 47.826 0.00 0.00 0.00 3.35
1692 2149 5.680665 GCAAGAAAGTCATTTCCCATCCATC 60.681 44.000 0.00 0.00 45.01 3.51
1707 2164 3.445096 ACAAGCAAGTGAAGCAAGAAAGT 59.555 39.130 0.00 0.00 0.00 2.66
1745 2202 4.274950 GGATGGGGTACAATACAATCGTTG 59.725 45.833 0.00 0.00 0.00 4.10
1749 2206 6.828785 GGATATGGATGGGGTACAATACAATC 59.171 42.308 0.00 0.00 0.00 2.67
1750 2207 6.276806 TGGATATGGATGGGGTACAATACAAT 59.723 38.462 0.00 0.00 0.00 2.71
1751 2208 5.613116 TGGATATGGATGGGGTACAATACAA 59.387 40.000 0.00 0.00 0.00 2.41
1753 2210 5.772393 TGGATATGGATGGGGTACAATAC 57.228 43.478 0.00 0.00 0.00 1.89
1755 2212 6.682440 TCATATGGATATGGATGGGGTACAAT 59.318 38.462 2.13 0.00 40.35 2.71
1782 2279 3.833650 CTCCCATGCTCATCTAGTCAGAT 59.166 47.826 0.00 0.00 42.52 2.90
1801 2298 8.161425 TGCAGGGTTAATAATAATAAGTCCTCC 58.839 37.037 0.00 0.00 0.00 4.30
1819 2342 8.568723 ACCCATATCATATAATAATGCAGGGTT 58.431 33.333 0.00 0.00 35.10 4.11
1820 2343 8.117870 ACCCATATCATATAATAATGCAGGGT 57.882 34.615 0.00 0.00 34.48 4.34
1821 2344 9.507329 GTACCCATATCATATAATAATGCAGGG 57.493 37.037 0.00 0.00 33.32 4.45
1822 2345 9.208022 CGTACCCATATCATATAATAATGCAGG 57.792 37.037 0.00 0.00 0.00 4.85
1823 2346 9.208022 CCGTACCCATATCATATAATAATGCAG 57.792 37.037 0.00 0.00 0.00 4.41
1824 2347 8.710239 ACCGTACCCATATCATATAATAATGCA 58.290 33.333 0.00 0.00 0.00 3.96
1848 2378 2.116238 TGGATGAAGCACCTACCTACC 58.884 52.381 0.00 0.00 0.00 3.18
1849 2379 2.500098 TGTGGATGAAGCACCTACCTAC 59.500 50.000 0.00 0.00 0.00 3.18
1850 2380 2.827755 TGTGGATGAAGCACCTACCTA 58.172 47.619 0.00 0.00 0.00 3.08
1851 2381 1.656587 TGTGGATGAAGCACCTACCT 58.343 50.000 0.00 0.00 0.00 3.08
1886 2419 2.940971 GCAGAGCACAGAGAGAGAGAGA 60.941 54.545 0.00 0.00 0.00 3.10
1899 2432 2.033141 TTGGGCAGAGCAGAGCAC 59.967 61.111 0.00 0.00 33.92 4.40
1932 2476 9.167311 GTATTGGTCAAATCTGTCTATTTGTCT 57.833 33.333 8.65 0.00 43.96 3.41
1935 2479 7.201821 GGGGTATTGGTCAAATCTGTCTATTTG 60.202 40.741 3.48 3.48 44.61 2.32
1963 2508 9.715121 AAAGCATGAGTGACATCATTTATTTTT 57.285 25.926 0.00 0.00 37.84 1.94
1968 2513 6.127925 GGTGAAAGCATGAGTGACATCATTTA 60.128 38.462 0.00 0.00 37.84 1.40
1970 2515 4.157289 GGTGAAAGCATGAGTGACATCATT 59.843 41.667 0.00 0.00 37.84 2.57
1972 2517 3.076621 GGTGAAAGCATGAGTGACATCA 58.923 45.455 0.00 0.00 37.07 3.07
1973 2518 2.421424 GGGTGAAAGCATGAGTGACATC 59.579 50.000 0.00 0.00 37.07 3.06
1974 2519 2.224843 TGGGTGAAAGCATGAGTGACAT 60.225 45.455 0.00 0.00 40.17 3.06
2019 2577 2.170607 ACAGACAAGCACCAGTAGTTGT 59.829 45.455 0.00 0.00 35.84 3.32
2021 2579 3.118408 TGAACAGACAAGCACCAGTAGTT 60.118 43.478 0.00 0.00 0.00 2.24
2022 2580 2.434336 TGAACAGACAAGCACCAGTAGT 59.566 45.455 0.00 0.00 0.00 2.73
2024 2582 2.806745 GCTGAACAGACAAGCACCAGTA 60.807 50.000 5.97 0.00 0.00 2.74
2025 2583 1.959042 CTGAACAGACAAGCACCAGT 58.041 50.000 0.00 0.00 0.00 4.00
2026 2584 0.590195 GCTGAACAGACAAGCACCAG 59.410 55.000 5.97 0.00 0.00 4.00
2028 2586 0.590195 CAGCTGAACAGACAAGCACC 59.410 55.000 8.42 0.00 0.00 5.01
2086 3218 4.141937 GCAGTGGGGAAGAGAAAACTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
2087 3219 3.384789 GCAGTGGGGAAGAGAAAACTTTT 59.615 43.478 0.00 0.00 0.00 2.27
2088 3220 2.959030 GCAGTGGGGAAGAGAAAACTTT 59.041 45.455 0.00 0.00 0.00 2.66
2089 3221 2.091885 TGCAGTGGGGAAGAGAAAACTT 60.092 45.455 0.00 0.00 0.00 2.66
2090 3222 1.494721 TGCAGTGGGGAAGAGAAAACT 59.505 47.619 0.00 0.00 0.00 2.66
2091 3223 1.981256 TGCAGTGGGGAAGAGAAAAC 58.019 50.000 0.00 0.00 0.00 2.43
2092 3224 2.108075 TCATGCAGTGGGGAAGAGAAAA 59.892 45.455 0.00 0.00 0.00 2.29
2093 3225 1.704628 TCATGCAGTGGGGAAGAGAAA 59.295 47.619 0.00 0.00 0.00 2.52
2094 3226 1.280133 CTCATGCAGTGGGGAAGAGAA 59.720 52.381 0.00 0.00 34.99 2.87
2095 3227 0.907486 CTCATGCAGTGGGGAAGAGA 59.093 55.000 0.00 0.00 34.99 3.10
2096 3228 0.617413 ACTCATGCAGTGGGGAAGAG 59.383 55.000 0.00 0.00 38.46 2.85
2097 3229 1.555075 GTACTCATGCAGTGGGGAAGA 59.445 52.381 0.00 0.00 36.43 2.87
2098 3230 1.556911 AGTACTCATGCAGTGGGGAAG 59.443 52.381 0.00 0.00 36.43 3.46
2099 3231 1.656587 AGTACTCATGCAGTGGGGAA 58.343 50.000 0.00 0.00 36.43 3.97
2100 3232 2.292257 ACTAGTACTCATGCAGTGGGGA 60.292 50.000 0.00 0.00 36.43 4.81
2101 3233 2.101582 GACTAGTACTCATGCAGTGGGG 59.898 54.545 0.00 0.00 36.43 4.96
2102 3234 2.101582 GGACTAGTACTCATGCAGTGGG 59.898 54.545 0.00 0.00 36.43 4.61
2103 3235 2.101582 GGGACTAGTACTCATGCAGTGG 59.898 54.545 4.77 0.00 36.43 4.00
2104 3236 3.027412 AGGGACTAGTACTCATGCAGTG 58.973 50.000 4.77 0.00 36.02 3.66
2105 3237 3.292460 GAGGGACTAGTACTCATGCAGT 58.708 50.000 17.70 0.00 41.55 4.40
2106 3238 2.625790 GGAGGGACTAGTACTCATGCAG 59.374 54.545 21.83 0.00 41.55 4.41
2107 3239 2.667470 GGAGGGACTAGTACTCATGCA 58.333 52.381 21.83 0.00 41.55 3.96
2108 3240 1.609555 CGGAGGGACTAGTACTCATGC 59.390 57.143 21.83 7.78 41.55 4.06
2109 3241 2.879646 GACGGAGGGACTAGTACTCATG 59.120 54.545 21.83 17.09 41.55 3.07
2110 3242 2.158638 GGACGGAGGGACTAGTACTCAT 60.159 54.545 21.83 13.07 41.55 2.90
2156 3346 3.826729 ACCTCCCAAAATAAGTGTTGCTC 59.173 43.478 0.00 0.00 0.00 4.26
2176 3366 6.600882 TGCTACTACTTATATAAGCCCACC 57.399 41.667 20.24 7.33 36.79 4.61
2274 3464 6.648725 GCAGCAAGGAAACACCAAATAAATTA 59.351 34.615 0.00 0.00 42.04 1.40
2503 3726 0.713883 CGGACCTGAACAAATCGACG 59.286 55.000 0.00 0.00 0.00 5.12
2602 3829 9.533253 CTTCAGTTGGTAAAATTCATCAAAGTT 57.467 29.630 0.00 0.00 0.00 2.66
2613 3875 3.957497 TGTGGTGCTTCAGTTGGTAAAAT 59.043 39.130 0.00 0.00 0.00 1.82
2620 3883 3.001533 GCAAAAATGTGGTGCTTCAGTTG 59.998 43.478 0.00 0.00 35.36 3.16
2639 3907 0.535780 CAGCAGGAGGACAACAGCAA 60.536 55.000 0.00 0.00 0.00 3.91
2664 3932 1.168407 TTCACAAGGTCTGCAGCAGC 61.168 55.000 18.43 12.48 42.57 5.25
2665 3933 1.531423 ATTCACAAGGTCTGCAGCAG 58.469 50.000 17.10 17.10 0.00 4.24
2762 4030 1.918974 GCATTCTTGTCGCGCATCATC 60.919 52.381 8.75 0.00 0.00 2.92
2806 4074 3.399330 ACACAAGTCCTGGTACAAATCG 58.601 45.455 0.00 0.00 38.70 3.34
2819 4087 7.492524 TGACAGAGATATGGAATACACAAGTC 58.507 38.462 0.00 0.00 0.00 3.01
2959 4231 1.153249 CTCCTCGTCGCTCTCCTCT 60.153 63.158 0.00 0.00 0.00 3.69
3058 4334 2.216898 GACTGAGCTAACCATCCATGC 58.783 52.381 0.00 0.00 0.00 4.06
3059 4335 3.118482 ACTGACTGAGCTAACCATCCATG 60.118 47.826 0.00 0.00 0.00 3.66
3060 4336 3.110705 ACTGACTGAGCTAACCATCCAT 58.889 45.455 0.00 0.00 0.00 3.41
3061 4337 2.540383 ACTGACTGAGCTAACCATCCA 58.460 47.619 0.00 0.00 0.00 3.41
3062 4338 4.160626 AGTTACTGACTGAGCTAACCATCC 59.839 45.833 0.00 0.00 37.17 3.51
3063 4339 5.105716 TGAGTTACTGACTGAGCTAACCATC 60.106 44.000 0.00 0.00 39.19 3.51
3064 4340 4.772624 TGAGTTACTGACTGAGCTAACCAT 59.227 41.667 0.00 0.00 39.19 3.55
3065 4341 4.149598 TGAGTTACTGACTGAGCTAACCA 58.850 43.478 0.00 0.00 39.19 3.67
3094 4370 7.123098 AGACAGAGATACATCATGATCATCCTC 59.877 40.741 17.53 15.22 0.00 3.71
3196 4478 3.257393 CACATGAACTAGTGGAGCTGAC 58.743 50.000 0.00 0.00 32.24 3.51
3213 4503 0.520619 CGACGACGACGATGACACAT 60.521 55.000 15.32 0.00 42.66 3.21
3241 4531 3.307242 GGCAAGTTATTCACAGCGACTAG 59.693 47.826 0.00 0.00 31.28 2.57
3243 4533 2.076863 GGCAAGTTATTCACAGCGACT 58.923 47.619 0.00 0.00 31.28 4.18
3272 4568 3.387374 TGAACTGCAAATGGAACCAACAT 59.613 39.130 0.00 0.00 0.00 2.71
3305 4601 5.104900 ACAGAACAGAACATACATCCCCTAC 60.105 44.000 0.00 0.00 0.00 3.18
3315 4611 9.554395 TGAATAAACAGAACAGAACAGAACATA 57.446 29.630 0.00 0.00 0.00 2.29
3316 4612 8.450578 TGAATAAACAGAACAGAACAGAACAT 57.549 30.769 0.00 0.00 0.00 2.71
3317 4613 7.857734 TGAATAAACAGAACAGAACAGAACA 57.142 32.000 0.00 0.00 0.00 3.18
3318 4614 9.736023 AAATGAATAAACAGAACAGAACAGAAC 57.264 29.630 0.00 0.00 0.00 3.01
3367 4667 9.676861 TGAGATGATTATCAACAGAAACAGAAT 57.323 29.630 0.00 0.00 35.70 2.40
3371 4671 9.322773 GAGATGAGATGATTATCAACAGAAACA 57.677 33.333 0.00 0.00 35.70 2.83
3373 4673 9.543783 CTGAGATGAGATGATTATCAACAGAAA 57.456 33.333 0.00 0.00 35.70 2.52
3376 4676 6.874664 CCCTGAGATGAGATGATTATCAACAG 59.125 42.308 0.00 0.00 35.70 3.16
3377 4677 6.239800 CCCCTGAGATGAGATGATTATCAACA 60.240 42.308 0.00 1.12 35.70 3.33
3378 4678 6.013898 TCCCCTGAGATGAGATGATTATCAAC 60.014 42.308 0.00 0.00 35.70 3.18
3380 4680 5.658474 TCCCCTGAGATGAGATGATTATCA 58.342 41.667 0.00 0.00 35.70 2.15
3381 4681 6.617782 TTCCCCTGAGATGAGATGATTATC 57.382 41.667 0.00 0.00 0.00 1.75
3382 4682 7.585884 AATTCCCCTGAGATGAGATGATTAT 57.414 36.000 0.00 0.00 0.00 1.28
3384 4684 5.926580 AATTCCCCTGAGATGAGATGATT 57.073 39.130 0.00 0.00 0.00 2.57
3385 4685 5.926580 AAATTCCCCTGAGATGAGATGAT 57.073 39.130 0.00 0.00 0.00 2.45
3386 4686 8.691194 ATATAAATTCCCCTGAGATGAGATGA 57.309 34.615 0.00 0.00 0.00 2.92
3387 4687 8.770322 AGATATAAATTCCCCTGAGATGAGATG 58.230 37.037 0.00 0.00 0.00 2.90
3388 4688 8.770322 CAGATATAAATTCCCCTGAGATGAGAT 58.230 37.037 0.00 0.00 0.00 2.75
3389 4689 7.310921 GCAGATATAAATTCCCCTGAGATGAGA 60.311 40.741 0.00 0.00 0.00 3.27
3390 4690 6.822676 GCAGATATAAATTCCCCTGAGATGAG 59.177 42.308 0.00 0.00 0.00 2.90
3409 4709 3.943381 CAGTTGGAATTGCAGAGCAGATA 59.057 43.478 0.00 0.00 40.61 1.98
3435 4735 3.423539 TTCTTGAGGATGGAACTGTGG 57.576 47.619 0.00 0.00 0.00 4.17
3438 4738 5.242393 ACATGTTTTCTTGAGGATGGAACTG 59.758 40.000 0.00 0.00 0.00 3.16
3440 4740 5.712152 ACATGTTTTCTTGAGGATGGAAC 57.288 39.130 0.00 0.00 0.00 3.62
3446 4746 8.185506 TGTAGTAGTACATGTTTTCTTGAGGA 57.814 34.615 2.30 0.00 34.02 3.71
3450 4750 9.862371 ATCTCTGTAGTAGTACATGTTTTCTTG 57.138 33.333 10.83 0.00 38.51 3.02
3453 4753 8.596380 GCAATCTCTGTAGTAGTACATGTTTTC 58.404 37.037 10.83 0.00 38.51 2.29
3458 4758 6.865726 GGATGCAATCTCTGTAGTAGTACATG 59.134 42.308 10.83 7.28 44.71 3.21
3459 4759 6.780031 AGGATGCAATCTCTGTAGTAGTACAT 59.220 38.462 10.83 0.00 44.71 2.29
3460 4760 6.039829 CAGGATGCAATCTCTGTAGTAGTACA 59.960 42.308 10.01 10.01 44.71 2.90
3461 4761 6.442952 CAGGATGCAATCTCTGTAGTAGTAC 58.557 44.000 0.37 0.37 44.71 2.73
3462 4762 6.641169 CAGGATGCAATCTCTGTAGTAGTA 57.359 41.667 0.00 0.00 44.71 1.82
3463 4763 5.528043 CAGGATGCAATCTCTGTAGTAGT 57.472 43.478 0.00 0.00 44.71 2.73
3483 4783 5.509716 TCAAATTCATCCTAGCAATGCAG 57.490 39.130 8.35 2.80 0.00 4.41
3514 4816 4.898829 TCCAAGTCAATTCTTGTGTGTG 57.101 40.909 6.24 0.00 42.01 3.82
3515 4817 6.061441 TGTATCCAAGTCAATTCTTGTGTGT 58.939 36.000 6.24 0.00 42.01 3.72
3520 4879 8.272545 TCTGAATGTATCCAAGTCAATTCTTG 57.727 34.615 0.88 0.88 42.86 3.02
3521 4880 9.471702 AATCTGAATGTATCCAAGTCAATTCTT 57.528 29.630 0.00 0.00 0.00 2.52
3524 4883 7.012704 CGGAATCTGAATGTATCCAAGTCAATT 59.987 37.037 0.00 0.00 0.00 2.32
3533 4892 5.201713 TCTCACGGAATCTGAATGTATCC 57.798 43.478 0.00 0.00 0.00 2.59
3548 4907 3.320256 TCTGAATGGATCTCATCTCACGG 59.680 47.826 0.00 0.00 34.44 4.94
3549 4908 4.581077 TCTGAATGGATCTCATCTCACG 57.419 45.455 0.00 0.00 34.44 4.35
3664 5071 3.514362 TGCTCGCGCCGATAGTCA 61.514 61.111 0.00 0.00 34.61 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.