Multiple sequence alignment - TraesCS5D01G558200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G558200 chr5D 100.000 3362 0 0 1 3362 560188499 560185138 0.000000e+00 6209
1 TraesCS5D01G558200 chr5D 77.533 1362 262 26 1001 2346 560190178 560191511 0.000000e+00 780
2 TraesCS5D01G558200 chr5D 84.706 340 31 10 2817 3152 7587671 7587349 1.510000e-83 320
3 TraesCS5D01G558200 chr5D 84.257 343 33 10 2814 3152 7589615 7589290 7.000000e-82 315
4 TraesCS5D01G558200 chr5D 79.596 446 77 12 113 551 420697980 420698418 1.170000e-79 307
5 TraesCS5D01G558200 chr5D 89.947 189 17 2 3171 3357 7589235 7589047 3.350000e-60 243
6 TraesCS5D01G558200 chr5D 93.651 126 8 0 1 126 384698000 384697875 4.430000e-44 189
7 TraesCS5D01G558200 chr5D 75.843 356 76 9 64 411 384031975 384032328 4.460000e-39 172
8 TraesCS5D01G558200 chr5D 92.000 100 8 0 1035 1134 560032397 560032298 1.260000e-29 141
9 TraesCS5D01G558200 chr4A 93.007 1616 95 8 764 2375 604659475 604661076 0.000000e+00 2342
10 TraesCS5D01G558200 chr4A 80.391 1382 239 19 997 2365 5813250 5811888 0.000000e+00 1022
11 TraesCS5D01G558200 chr5A 84.031 1409 199 10 997 2391 458477721 458479117 0.000000e+00 1332
12 TraesCS5D01G558200 chr5A 81.752 411 59 8 2818 3219 520622143 520622546 2.500000e-86 329
13 TraesCS5D01G558200 chr2D 84.094 1402 194 11 997 2387 557479244 557477861 0.000000e+00 1327
14 TraesCS5D01G558200 chr4B 82.502 1383 201 21 988 2353 580385032 580386390 0.000000e+00 1175
15 TraesCS5D01G558200 chr4B 79.423 1317 231 21 1078 2375 580526800 580528095 0.000000e+00 894
16 TraesCS5D01G558200 chr4B 90.659 182 17 0 3171 3352 591487971 591488152 3.350000e-60 243
17 TraesCS5D01G558200 chr2B 94.618 576 30 1 1 576 779172217 779172791 0.000000e+00 891
18 TraesCS5D01G558200 chr2B 89.375 160 9 3 2818 2977 619387939 619387788 9.520000e-46 195
19 TraesCS5D01G558200 chr2B 80.952 210 19 10 3125 3332 611317610 611317420 2.700000e-31 147
20 TraesCS5D01G558200 chr3B 94.087 575 31 3 1 575 44204543 44205114 0.000000e+00 870
21 TraesCS5D01G558200 chr3B 81.640 561 61 28 2823 3357 568563713 568563169 8.620000e-116 427
22 TraesCS5D01G558200 chr3B 90.110 182 18 0 3171 3352 390915045 390915226 1.560000e-58 237
23 TraesCS5D01G558200 chr3B 89.720 107 9 2 2815 2920 227108601 227108706 5.850000e-28 135
24 TraesCS5D01G558200 chr5B 76.872 1362 277 25 1001 2346 710502484 710503823 0.000000e+00 736
25 TraesCS5D01G558200 chr5B 85.091 711 77 23 771 1473 710499408 710498719 0.000000e+00 699
26 TraesCS5D01G558200 chr5B 86.804 341 25 9 2818 3151 644473065 644472738 2.470000e-96 363
27 TraesCS5D01G558200 chr5B 89.947 189 17 2 3171 3357 644472681 644472493 3.350000e-60 243
28 TraesCS5D01G558200 chr5B 88.514 148 11 3 671 812 710499709 710499562 1.240000e-39 174
29 TraesCS5D01G558200 chr5B 88.776 98 11 0 574 671 422623762 422623859 1.640000e-23 121
30 TraesCS5D01G558200 chr3A 81.106 434 68 12 125 551 704351639 704351213 5.370000e-88 335
31 TraesCS5D01G558200 chr1A 84.068 295 43 3 3058 3352 60999045 60998755 7.100000e-72 281
32 TraesCS5D01G558200 chr1A 86.066 244 29 3 3097 3339 462267723 462267962 1.200000e-64 257
33 TraesCS5D01G558200 chr6B 91.209 182 16 0 3171 3352 544634348 544634529 7.200000e-62 248
34 TraesCS5D01G558200 chr6B 82.545 275 24 12 2817 3084 544633883 544634140 1.570000e-53 220
35 TraesCS5D01G558200 chr1B 89.947 189 16 3 3171 3357 143444160 143443973 1.210000e-59 241
36 TraesCS5D01G558200 chr1B 91.765 85 2 1 2686 2765 181435250 181435334 2.740000e-21 113
37 TraesCS5D01G558200 chr7B 89.247 186 19 1 3167 3352 348282645 348282829 7.250000e-57 231
38 TraesCS5D01G558200 chr7B 91.241 137 11 1 2818 2954 348282162 348282297 5.730000e-43 185
39 TraesCS5D01G558200 chr3D 85.000 180 18 6 2818 2995 19334259 19334087 1.240000e-39 174
40 TraesCS5D01G558200 chr3D 87.129 101 12 1 575 675 19177544 19177643 2.740000e-21 113
41 TraesCS5D01G558200 chr7D 91.509 106 8 1 575 680 469543658 469543762 9.720000e-31 145
42 TraesCS5D01G558200 chr7D 87.255 102 11 2 575 676 18721049 18721148 7.620000e-22 115
43 TraesCS5D01G558200 chr2A 91.589 107 4 1 2686 2787 171082942 171083048 3.500000e-30 143
44 TraesCS5D01G558200 chr4D 88.889 99 10 1 575 673 126631673 126631770 1.640000e-23 121
45 TraesCS5D01G558200 chr4D 88.776 98 10 1 574 671 508934452 508934356 5.890000e-23 119
46 TraesCS5D01G558200 chrUn 88.776 98 10 1 575 672 104128987 104129083 5.890000e-23 119
47 TraesCS5D01G558200 chrUn 88.000 100 11 1 575 674 95500363 95500461 2.120000e-22 117
48 TraesCS5D01G558200 chr6D 87.255 102 12 1 575 676 362633107 362633207 7.620000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G558200 chr5D 560185138 560188499 3361 True 6209.000000 6209 100.000000 1 3362 1 chr5D.!!$R3 3361
1 TraesCS5D01G558200 chr5D 560190178 560191511 1333 False 780.000000 780 77.533000 1001 2346 1 chr5D.!!$F3 1345
2 TraesCS5D01G558200 chr5D 7587349 7589615 2266 True 292.666667 320 86.303333 2814 3357 3 chr5D.!!$R4 543
3 TraesCS5D01G558200 chr4A 604659475 604661076 1601 False 2342.000000 2342 93.007000 764 2375 1 chr4A.!!$F1 1611
4 TraesCS5D01G558200 chr4A 5811888 5813250 1362 True 1022.000000 1022 80.391000 997 2365 1 chr4A.!!$R1 1368
5 TraesCS5D01G558200 chr5A 458477721 458479117 1396 False 1332.000000 1332 84.031000 997 2391 1 chr5A.!!$F1 1394
6 TraesCS5D01G558200 chr2D 557477861 557479244 1383 True 1327.000000 1327 84.094000 997 2387 1 chr2D.!!$R1 1390
7 TraesCS5D01G558200 chr4B 580385032 580386390 1358 False 1175.000000 1175 82.502000 988 2353 1 chr4B.!!$F1 1365
8 TraesCS5D01G558200 chr4B 580526800 580528095 1295 False 894.000000 894 79.423000 1078 2375 1 chr4B.!!$F2 1297
9 TraesCS5D01G558200 chr2B 779172217 779172791 574 False 891.000000 891 94.618000 1 576 1 chr2B.!!$F1 575
10 TraesCS5D01G558200 chr3B 44204543 44205114 571 False 870.000000 870 94.087000 1 575 1 chr3B.!!$F1 574
11 TraesCS5D01G558200 chr3B 568563169 568563713 544 True 427.000000 427 81.640000 2823 3357 1 chr3B.!!$R1 534
12 TraesCS5D01G558200 chr5B 710502484 710503823 1339 False 736.000000 736 76.872000 1001 2346 1 chr5B.!!$F2 1345
13 TraesCS5D01G558200 chr5B 710498719 710499709 990 True 436.500000 699 86.802500 671 1473 2 chr5B.!!$R2 802
14 TraesCS5D01G558200 chr5B 644472493 644473065 572 True 303.000000 363 88.375500 2818 3357 2 chr5B.!!$R1 539
15 TraesCS5D01G558200 chr6B 544633883 544634529 646 False 234.000000 248 86.877000 2817 3352 2 chr6B.!!$F1 535
16 TraesCS5D01G558200 chr7B 348282162 348282829 667 False 208.000000 231 90.244000 2818 3352 2 chr7B.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 632 0.033642 GGCTACCGGGACTATTGCTC 59.966 60.0 6.32 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 2701 0.396435 AGAACTTGCATGTCGGTCCA 59.604 50.0 5.61 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.899054 CGGAGGAGCGAGCTATGGA 60.899 63.158 0.00 0.00 0.00 3.41
117 118 2.276740 GAGGATGCAAGGGGGTGG 59.723 66.667 0.00 0.00 0.00 4.61
207 208 3.971702 GGGGACACCAGGCAAGCT 61.972 66.667 0.00 0.00 39.85 3.74
257 258 4.717629 CACGCCGGAGTCGAAGCA 62.718 66.667 8.30 0.00 39.00 3.91
266 267 4.373116 GTCGAAGCAGCACCGGGA 62.373 66.667 6.32 0.00 0.00 5.14
429 430 4.864334 GGAGGGCGCAGGTCCATG 62.864 72.222 10.83 0.00 41.80 3.66
481 482 3.319198 GGGGTGAAGGGAGACGCA 61.319 66.667 0.00 0.00 0.00 5.24
576 577 3.727258 CCACCCCGGAGCCATGAA 61.727 66.667 0.73 0.00 36.56 2.57
577 578 2.438434 CACCCCGGAGCCATGAAC 60.438 66.667 0.73 0.00 0.00 3.18
578 579 3.728373 ACCCCGGAGCCATGAACC 61.728 66.667 0.73 0.00 0.00 3.62
579 580 3.727258 CCCCGGAGCCATGAACCA 61.727 66.667 0.73 0.00 0.00 3.67
580 581 2.124570 CCCGGAGCCATGAACCAG 60.125 66.667 0.73 0.00 0.00 4.00
581 582 2.124570 CCGGAGCCATGAACCAGG 60.125 66.667 0.00 0.00 0.00 4.45
582 583 2.669133 CCGGAGCCATGAACCAGGA 61.669 63.158 0.00 0.00 0.00 3.86
583 584 1.450312 CGGAGCCATGAACCAGGAC 60.450 63.158 0.00 0.00 0.00 3.85
584 585 1.903877 CGGAGCCATGAACCAGGACT 61.904 60.000 0.00 0.00 0.00 3.85
585 586 0.393537 GGAGCCATGAACCAGGACTG 60.394 60.000 0.00 0.00 0.00 3.51
586 587 0.615331 GAGCCATGAACCAGGACTGA 59.385 55.000 0.00 0.00 0.00 3.41
587 588 1.211457 GAGCCATGAACCAGGACTGAT 59.789 52.381 0.00 0.00 0.00 2.90
588 589 2.435805 GAGCCATGAACCAGGACTGATA 59.564 50.000 0.00 0.00 0.00 2.15
589 590 2.171448 AGCCATGAACCAGGACTGATAC 59.829 50.000 0.00 0.00 0.00 2.24
590 591 2.171448 GCCATGAACCAGGACTGATACT 59.829 50.000 0.00 0.00 0.00 2.12
591 592 3.742640 GCCATGAACCAGGACTGATACTC 60.743 52.174 0.00 0.00 0.00 2.59
592 593 3.452264 CCATGAACCAGGACTGATACTCA 59.548 47.826 0.00 0.00 0.00 3.41
593 594 4.437239 CATGAACCAGGACTGATACTCAC 58.563 47.826 0.00 0.00 0.00 3.51
594 595 3.506398 TGAACCAGGACTGATACTCACA 58.494 45.455 0.00 0.00 0.00 3.58
595 596 4.096681 TGAACCAGGACTGATACTCACAT 58.903 43.478 0.00 0.00 0.00 3.21
596 597 4.532126 TGAACCAGGACTGATACTCACATT 59.468 41.667 0.00 0.00 0.00 2.71
597 598 5.719563 TGAACCAGGACTGATACTCACATTA 59.280 40.000 0.00 0.00 0.00 1.90
598 599 5.860941 ACCAGGACTGATACTCACATTAG 57.139 43.478 0.00 0.00 0.00 1.73
599 600 5.273208 ACCAGGACTGATACTCACATTAGT 58.727 41.667 0.00 0.00 0.00 2.24
600 601 5.361285 ACCAGGACTGATACTCACATTAGTC 59.639 44.000 0.00 0.00 39.57 2.59
604 605 6.701145 GACTGATACTCACATTAGTCCTGA 57.299 41.667 0.00 0.00 36.19 3.86
605 606 7.283625 GACTGATACTCACATTAGTCCTGAT 57.716 40.000 0.00 0.00 36.19 2.90
606 607 7.667575 ACTGATACTCACATTAGTCCTGATT 57.332 36.000 0.00 0.00 0.00 2.57
607 608 7.721402 ACTGATACTCACATTAGTCCTGATTC 58.279 38.462 0.00 0.00 0.00 2.52
608 609 6.739112 TGATACTCACATTAGTCCTGATTCG 58.261 40.000 0.00 0.00 0.00 3.34
609 610 6.321435 TGATACTCACATTAGTCCTGATTCGT 59.679 38.462 0.00 0.00 0.00 3.85
610 611 7.501225 TGATACTCACATTAGTCCTGATTCGTA 59.499 37.037 0.00 0.00 0.00 3.43
611 612 6.525578 ACTCACATTAGTCCTGATTCGTAA 57.474 37.500 0.00 0.00 0.00 3.18
612 613 6.565234 ACTCACATTAGTCCTGATTCGTAAG 58.435 40.000 0.00 0.00 0.00 2.34
613 614 5.902681 TCACATTAGTCCTGATTCGTAAGG 58.097 41.667 0.00 0.00 38.47 2.69
614 615 4.508124 CACATTAGTCCTGATTCGTAAGGC 59.492 45.833 0.00 0.00 33.25 4.35
615 616 4.406003 ACATTAGTCCTGATTCGTAAGGCT 59.594 41.667 0.00 0.00 33.25 4.58
616 617 5.597182 ACATTAGTCCTGATTCGTAAGGCTA 59.403 40.000 0.00 0.00 33.25 3.93
617 618 5.511234 TTAGTCCTGATTCGTAAGGCTAC 57.489 43.478 0.00 0.00 33.25 3.58
618 619 2.694109 AGTCCTGATTCGTAAGGCTACC 59.306 50.000 0.00 0.00 33.25 3.18
619 620 1.679680 TCCTGATTCGTAAGGCTACCG 59.320 52.381 0.00 0.00 33.25 4.02
620 621 1.269621 CCTGATTCGTAAGGCTACCGG 60.270 57.143 0.00 0.00 38.47 5.28
621 622 0.748450 TGATTCGTAAGGCTACCGGG 59.252 55.000 6.32 0.00 38.47 5.73
622 623 1.035139 GATTCGTAAGGCTACCGGGA 58.965 55.000 6.32 0.00 38.47 5.14
623 624 0.749049 ATTCGTAAGGCTACCGGGAC 59.251 55.000 6.32 0.00 38.47 4.46
624 625 0.323725 TTCGTAAGGCTACCGGGACT 60.324 55.000 6.32 0.00 38.47 3.85
625 626 0.546122 TCGTAAGGCTACCGGGACTA 59.454 55.000 6.32 0.00 38.47 2.59
626 627 1.143684 TCGTAAGGCTACCGGGACTAT 59.856 52.381 6.32 0.00 38.47 2.12
627 628 1.959282 CGTAAGGCTACCGGGACTATT 59.041 52.381 6.32 0.00 0.00 1.73
628 629 2.288030 CGTAAGGCTACCGGGACTATTG 60.288 54.545 6.32 0.00 0.00 1.90
629 630 0.468648 AAGGCTACCGGGACTATTGC 59.531 55.000 6.32 0.00 0.00 3.56
630 631 0.398664 AGGCTACCGGGACTATTGCT 60.399 55.000 6.32 0.00 0.00 3.91
631 632 0.033642 GGCTACCGGGACTATTGCTC 59.966 60.000 6.32 0.00 0.00 4.26
632 633 1.041437 GCTACCGGGACTATTGCTCT 58.959 55.000 6.32 0.00 0.00 4.09
633 634 1.269831 GCTACCGGGACTATTGCTCTG 60.270 57.143 6.32 0.00 0.00 3.35
634 635 1.341531 CTACCGGGACTATTGCTCTGG 59.658 57.143 6.32 0.00 0.00 3.86
635 636 0.617820 ACCGGGACTATTGCTCTGGT 60.618 55.000 6.32 0.00 34.33 4.00
636 637 0.105039 CCGGGACTATTGCTCTGGTC 59.895 60.000 0.00 0.00 0.00 4.02
637 638 1.115467 CGGGACTATTGCTCTGGTCT 58.885 55.000 0.00 0.00 0.00 3.85
638 639 1.202463 CGGGACTATTGCTCTGGTCTG 60.202 57.143 0.00 0.00 0.00 3.51
639 640 1.139853 GGGACTATTGCTCTGGTCTGG 59.860 57.143 0.00 0.00 0.00 3.86
640 641 1.474143 GGACTATTGCTCTGGTCTGGC 60.474 57.143 0.00 0.00 0.00 4.85
641 642 0.543749 ACTATTGCTCTGGTCTGGCC 59.456 55.000 0.00 0.00 37.90 5.36
642 643 0.543277 CTATTGCTCTGGTCTGGCCA 59.457 55.000 4.71 4.71 46.95 5.36
649 650 3.667476 TGGTCTGGCCAGAACCAA 58.333 55.556 41.07 25.55 44.38 3.67
650 651 1.926657 TGGTCTGGCCAGAACCAAA 59.073 52.632 41.07 24.82 44.38 3.28
651 652 0.178992 TGGTCTGGCCAGAACCAAAG 60.179 55.000 41.07 13.14 44.38 2.77
652 653 1.527433 GGTCTGGCCAGAACCAAAGC 61.527 60.000 36.71 22.06 39.20 3.51
653 654 1.228552 TCTGGCCAGAACCAAAGCC 60.229 57.895 33.41 0.00 45.96 4.35
654 655 2.203625 TGGCCAGAACCAAAGCCC 60.204 61.111 0.00 0.00 45.14 5.19
655 656 2.118294 GGCCAGAACCAAAGCCCT 59.882 61.111 0.00 0.00 39.60 5.19
656 657 2.278330 GGCCAGAACCAAAGCCCTG 61.278 63.158 0.00 0.00 39.60 4.45
657 658 1.531602 GCCAGAACCAAAGCCCTGT 60.532 57.895 0.00 0.00 0.00 4.00
658 659 1.115326 GCCAGAACCAAAGCCCTGTT 61.115 55.000 0.00 0.00 0.00 3.16
659 660 1.413118 CCAGAACCAAAGCCCTGTTT 58.587 50.000 0.00 0.00 0.00 2.83
660 661 1.762370 CCAGAACCAAAGCCCTGTTTT 59.238 47.619 0.00 0.00 0.00 2.43
661 662 2.224042 CCAGAACCAAAGCCCTGTTTTC 60.224 50.000 0.00 0.00 0.00 2.29
662 663 2.695147 CAGAACCAAAGCCCTGTTTTCT 59.305 45.455 0.00 0.00 0.00 2.52
663 664 3.888930 CAGAACCAAAGCCCTGTTTTCTA 59.111 43.478 0.00 0.00 0.00 2.10
664 665 3.889538 AGAACCAAAGCCCTGTTTTCTAC 59.110 43.478 0.00 0.00 0.00 2.59
665 666 3.595190 ACCAAAGCCCTGTTTTCTACT 57.405 42.857 0.00 0.00 0.00 2.57
666 667 4.717279 ACCAAAGCCCTGTTTTCTACTA 57.283 40.909 0.00 0.00 0.00 1.82
667 668 4.652822 ACCAAAGCCCTGTTTTCTACTAG 58.347 43.478 0.00 0.00 0.00 2.57
668 669 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
669 670 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
676 677 6.480320 GCCCTGTTTTCTACTAGTGATATGTG 59.520 42.308 5.39 0.00 0.00 3.21
681 682 9.772973 TGTTTTCTACTAGTGATATGTGTTTGT 57.227 29.630 5.39 0.00 0.00 2.83
691 692 8.578308 AGTGATATGTGTTTGTTTCACAATTG 57.422 30.769 3.24 3.24 46.47 2.32
692 693 8.196771 AGTGATATGTGTTTGTTTCACAATTGT 58.803 29.630 4.92 4.92 46.47 2.71
758 764 1.168714 GCTCGGTCTCCAAAAGCAAT 58.831 50.000 0.00 0.00 33.21 3.56
809 816 0.534412 AAGCTAGATGACACGCTGCT 59.466 50.000 0.00 0.00 32.22 4.24
812 819 1.866063 GCTAGATGACACGCTGCTACC 60.866 57.143 0.00 0.00 0.00 3.18
813 820 1.405463 CTAGATGACACGCTGCTACCA 59.595 52.381 0.00 0.00 0.00 3.25
816 823 0.034756 ATGACACGCTGCTACCAACA 59.965 50.000 0.00 0.00 0.00 3.33
817 824 0.034756 TGACACGCTGCTACCAACAT 59.965 50.000 0.00 0.00 0.00 2.71
818 825 1.273886 TGACACGCTGCTACCAACATA 59.726 47.619 0.00 0.00 0.00 2.29
820 827 1.006832 CACGCTGCTACCAACATACC 58.993 55.000 0.00 0.00 0.00 2.73
821 828 0.459585 ACGCTGCTACCAACATACCG 60.460 55.000 0.00 0.00 0.00 4.02
822 829 1.151777 CGCTGCTACCAACATACCGG 61.152 60.000 0.00 0.00 0.00 5.28
823 830 0.177141 GCTGCTACCAACATACCGGA 59.823 55.000 9.46 0.00 0.00 5.14
824 831 1.406341 GCTGCTACCAACATACCGGAA 60.406 52.381 9.46 0.00 0.00 4.30
835 1036 3.236896 ACATACCGGAATACCTACCCAG 58.763 50.000 9.46 0.00 0.00 4.45
1068 1296 3.633609 ATCCGACGTCGACCTCCCA 62.634 63.158 37.65 12.97 43.02 4.37
1113 1341 0.882484 TTGACGTCAAATGGCTGCGA 60.882 50.000 27.94 1.47 32.11 5.10
1186 1417 2.413142 GGCAATGTCCAGCAGCTCC 61.413 63.158 0.00 0.00 0.00 4.70
1686 1950 3.941657 GACCAGCAGCGTGTCCTCC 62.942 68.421 6.17 0.00 0.00 4.30
1752 2024 2.026262 GGTCCTAACTGCCATCAAGGAA 60.026 50.000 0.00 0.00 41.22 3.36
1860 2135 3.681874 GCTACTACCGAGCCAAAAAGGAT 60.682 47.826 0.00 0.00 41.22 3.24
1870 2145 3.575687 AGCCAAAAAGGATCAGGAACAAG 59.424 43.478 0.00 0.00 41.22 3.16
1872 2147 3.897505 CCAAAAAGGATCAGGAACAAGGT 59.102 43.478 0.00 0.00 41.22 3.50
1875 2150 4.664688 AAAGGATCAGGAACAAGGTCAT 57.335 40.909 0.00 0.00 0.00 3.06
2068 2343 2.962569 CGCTCGAGGAAGTGGTGA 59.037 61.111 15.58 0.00 0.00 4.02
2078 2353 1.229082 AAGTGGTGAGCGAGGGGTA 60.229 57.895 0.00 0.00 0.00 3.69
2079 2354 1.542187 AAGTGGTGAGCGAGGGGTAC 61.542 60.000 0.00 0.00 0.00 3.34
2296 2571 0.604511 CGAGGTGGGGCTAACGTTTT 60.605 55.000 5.91 0.00 0.00 2.43
2332 2607 0.319813 GCATTTCCAGCGGTGCTTTT 60.320 50.000 9.63 0.00 36.40 2.27
2334 2609 1.270550 CATTTCCAGCGGTGCTTTTCT 59.729 47.619 9.63 0.00 36.40 2.52
2365 2640 3.569916 GCGATCGGCATGTAAGAGA 57.430 52.632 18.30 0.00 42.87 3.10
2375 2650 5.009110 TCGGCATGTAAGAGAAGAGTCTATG 59.991 44.000 0.00 0.00 32.80 2.23
2404 2679 7.693969 ATGAGAAGAGTATTTCTTTTGTGGG 57.306 36.000 0.00 0.00 46.12 4.61
2405 2680 6.601332 TGAGAAGAGTATTTCTTTTGTGGGT 58.399 36.000 0.00 0.00 46.12 4.51
2406 2681 7.741785 TGAGAAGAGTATTTCTTTTGTGGGTA 58.258 34.615 0.00 0.00 46.12 3.69
2407 2682 8.215050 TGAGAAGAGTATTTCTTTTGTGGGTAA 58.785 33.333 0.00 0.00 46.12 2.85
2408 2683 9.232473 GAGAAGAGTATTTCTTTTGTGGGTAAT 57.768 33.333 0.00 0.00 46.12 1.89
2409 2684 9.014297 AGAAGAGTATTTCTTTTGTGGGTAATG 57.986 33.333 0.00 0.00 46.12 1.90
2410 2685 7.703058 AGAGTATTTCTTTTGTGGGTAATGG 57.297 36.000 0.00 0.00 29.61 3.16
2411 2686 6.663523 AGAGTATTTCTTTTGTGGGTAATGGG 59.336 38.462 0.00 0.00 29.61 4.00
2412 2687 6.557568 AGTATTTCTTTTGTGGGTAATGGGA 58.442 36.000 0.00 0.00 0.00 4.37
2413 2688 7.013834 AGTATTTCTTTTGTGGGTAATGGGAA 58.986 34.615 0.00 0.00 0.00 3.97
2414 2689 5.799827 TTTCTTTTGTGGGTAATGGGAAG 57.200 39.130 0.00 0.00 0.00 3.46
2415 2690 4.733077 TCTTTTGTGGGTAATGGGAAGA 57.267 40.909 0.00 0.00 0.00 2.87
2416 2691 4.662278 TCTTTTGTGGGTAATGGGAAGAG 58.338 43.478 0.00 0.00 0.00 2.85
2417 2692 4.105697 TCTTTTGTGGGTAATGGGAAGAGT 59.894 41.667 0.00 0.00 0.00 3.24
2418 2693 3.713826 TTGTGGGTAATGGGAAGAGTC 57.286 47.619 0.00 0.00 0.00 3.36
2419 2694 1.913419 TGTGGGTAATGGGAAGAGTCC 59.087 52.381 0.00 0.00 44.10 3.85
2420 2695 2.197465 GTGGGTAATGGGAAGAGTCCT 58.803 52.381 0.00 0.00 44.28 3.85
2421 2696 2.576648 GTGGGTAATGGGAAGAGTCCTT 59.423 50.000 0.00 0.00 44.28 3.36
2422 2697 3.010250 GTGGGTAATGGGAAGAGTCCTTT 59.990 47.826 0.00 0.00 44.28 3.11
2423 2698 4.226620 GTGGGTAATGGGAAGAGTCCTTTA 59.773 45.833 0.00 0.00 44.28 1.85
2424 2699 4.473559 TGGGTAATGGGAAGAGTCCTTTAG 59.526 45.833 0.00 0.00 44.28 1.85
2425 2700 4.720273 GGGTAATGGGAAGAGTCCTTTAGA 59.280 45.833 0.00 0.00 44.28 2.10
2426 2701 5.369993 GGGTAATGGGAAGAGTCCTTTAGAT 59.630 44.000 0.00 0.00 44.28 1.98
2427 2702 6.292150 GGTAATGGGAAGAGTCCTTTAGATG 58.708 44.000 0.00 0.00 44.28 2.90
2428 2703 5.379706 AATGGGAAGAGTCCTTTAGATGG 57.620 43.478 0.00 0.00 44.28 3.51
2429 2704 4.074799 TGGGAAGAGTCCTTTAGATGGA 57.925 45.455 0.00 0.00 44.28 3.41
2436 2711 3.821421 GTCCTTTAGATGGACCGACAT 57.179 47.619 1.76 0.00 46.01 3.06
2437 2712 3.458189 GTCCTTTAGATGGACCGACATG 58.542 50.000 1.76 0.00 46.01 3.21
2438 2713 2.158957 TCCTTTAGATGGACCGACATGC 60.159 50.000 0.00 0.00 0.00 4.06
2439 2714 2.419990 CCTTTAGATGGACCGACATGCA 60.420 50.000 0.00 0.00 0.00 3.96
2440 2715 3.270027 CTTTAGATGGACCGACATGCAA 58.730 45.455 0.00 0.00 0.00 4.08
2441 2716 2.602257 TAGATGGACCGACATGCAAG 57.398 50.000 0.00 0.00 0.00 4.01
2442 2717 0.615331 AGATGGACCGACATGCAAGT 59.385 50.000 0.00 0.00 0.00 3.16
2443 2718 1.003580 AGATGGACCGACATGCAAGTT 59.996 47.619 0.00 0.00 0.00 2.66
2444 2719 1.398390 GATGGACCGACATGCAAGTTC 59.602 52.381 0.00 0.00 0.00 3.01
2445 2720 0.396435 TGGACCGACATGCAAGTTCT 59.604 50.000 0.00 0.00 0.00 3.01
2446 2721 1.202758 TGGACCGACATGCAAGTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
2447 2722 1.197721 GGACCGACATGCAAGTTCTTG 59.802 52.381 8.04 8.04 0.00 3.02
2448 2723 1.873591 GACCGACATGCAAGTTCTTGT 59.126 47.619 13.04 0.00 0.00 3.16
2449 2724 1.603802 ACCGACATGCAAGTTCTTGTG 59.396 47.619 13.04 7.71 0.00 3.33
2450 2725 1.603802 CCGACATGCAAGTTCTTGTGT 59.396 47.619 13.04 10.38 0.00 3.72
2451 2726 2.033299 CCGACATGCAAGTTCTTGTGTT 59.967 45.455 13.04 0.00 0.00 3.32
2452 2727 3.038017 CGACATGCAAGTTCTTGTGTTG 58.962 45.455 13.04 10.35 0.00 3.33
2453 2728 2.791004 GACATGCAAGTTCTTGTGTTGC 59.209 45.455 13.04 0.00 45.56 4.17
2456 2731 2.566952 GCAAGTTCTTGTGTTGCAGT 57.433 45.000 13.04 0.00 44.87 4.40
2457 2732 3.691049 GCAAGTTCTTGTGTTGCAGTA 57.309 42.857 13.04 0.00 44.87 2.74
2458 2733 3.363178 GCAAGTTCTTGTGTTGCAGTAC 58.637 45.455 13.04 0.00 44.87 2.73
2459 2734 3.181501 GCAAGTTCTTGTGTTGCAGTACA 60.182 43.478 13.04 1.44 44.87 2.90
2460 2735 4.342772 CAAGTTCTTGTGTTGCAGTACAC 58.657 43.478 13.63 13.63 46.71 2.90
2461 2736 3.873910 AGTTCTTGTGTTGCAGTACACT 58.126 40.909 19.56 5.62 46.67 3.55
2462 2737 3.871594 AGTTCTTGTGTTGCAGTACACTC 59.128 43.478 19.56 2.80 46.67 3.51
2463 2738 3.819564 TCTTGTGTTGCAGTACACTCT 57.180 42.857 19.56 0.00 46.67 3.24
2464 2739 3.717707 TCTTGTGTTGCAGTACACTCTC 58.282 45.455 19.56 0.00 46.67 3.20
2465 2740 2.526304 TGTGTTGCAGTACACTCTCC 57.474 50.000 19.56 0.00 46.67 3.71
2466 2741 1.760029 TGTGTTGCAGTACACTCTCCA 59.240 47.619 19.56 0.00 46.67 3.86
2467 2742 2.368548 TGTGTTGCAGTACACTCTCCAT 59.631 45.455 19.56 0.00 46.67 3.41
2468 2743 3.181455 TGTGTTGCAGTACACTCTCCATT 60.181 43.478 19.56 0.00 46.67 3.16
2469 2744 3.433615 GTGTTGCAGTACACTCTCCATTC 59.566 47.826 13.31 0.00 43.92 2.67
2470 2745 3.324846 TGTTGCAGTACACTCTCCATTCT 59.675 43.478 0.00 0.00 0.00 2.40
2471 2746 4.526650 TGTTGCAGTACACTCTCCATTCTA 59.473 41.667 0.00 0.00 0.00 2.10
2472 2747 5.011635 TGTTGCAGTACACTCTCCATTCTAA 59.988 40.000 0.00 0.00 0.00 2.10
2473 2748 5.738619 TGCAGTACACTCTCCATTCTAAA 57.261 39.130 0.00 0.00 0.00 1.85
2474 2749 6.109156 TGCAGTACACTCTCCATTCTAAAA 57.891 37.500 0.00 0.00 0.00 1.52
2475 2750 6.711277 TGCAGTACACTCTCCATTCTAAAAT 58.289 36.000 0.00 0.00 0.00 1.82
2476 2751 7.847096 TGCAGTACACTCTCCATTCTAAAATA 58.153 34.615 0.00 0.00 0.00 1.40
2477 2752 7.764443 TGCAGTACACTCTCCATTCTAAAATAC 59.236 37.037 0.00 0.00 0.00 1.89
2478 2753 7.764443 GCAGTACACTCTCCATTCTAAAATACA 59.236 37.037 0.00 0.00 0.00 2.29
2479 2754 9.307121 CAGTACACTCTCCATTCTAAAATACAG 57.693 37.037 0.00 0.00 0.00 2.74
2480 2755 9.036980 AGTACACTCTCCATTCTAAAATACAGT 57.963 33.333 0.00 0.00 0.00 3.55
2481 2756 9.088512 GTACACTCTCCATTCTAAAATACAGTG 57.911 37.037 0.00 0.00 0.00 3.66
2482 2757 6.595716 ACACTCTCCATTCTAAAATACAGTGC 59.404 38.462 0.00 0.00 0.00 4.40
2483 2758 5.812642 ACTCTCCATTCTAAAATACAGTGCG 59.187 40.000 0.00 0.00 0.00 5.34
2484 2759 5.730550 TCTCCATTCTAAAATACAGTGCGT 58.269 37.500 0.00 0.00 0.00 5.24
2485 2760 6.869695 TCTCCATTCTAAAATACAGTGCGTA 58.130 36.000 0.00 0.00 0.00 4.42
2486 2761 7.497595 TCTCCATTCTAAAATACAGTGCGTAT 58.502 34.615 0.00 0.00 42.91 3.06
2530 2805 7.749539 ACTTTCAATGTTTAACCAAGTTTCG 57.250 32.000 0.00 0.00 0.00 3.46
2531 2806 7.540299 ACTTTCAATGTTTAACCAAGTTTCGA 58.460 30.769 0.00 0.00 0.00 3.71
2532 2807 7.700656 ACTTTCAATGTTTAACCAAGTTTCGAG 59.299 33.333 0.00 0.00 0.00 4.04
2533 2808 6.928979 TCAATGTTTAACCAAGTTTCGAGA 57.071 33.333 0.00 0.00 0.00 4.04
2534 2809 7.323049 TCAATGTTTAACCAAGTTTCGAGAA 57.677 32.000 0.00 0.00 0.00 2.87
2535 2810 7.414436 TCAATGTTTAACCAAGTTTCGAGAAG 58.586 34.615 0.00 0.00 0.00 2.85
2536 2811 7.281324 TCAATGTTTAACCAAGTTTCGAGAAGA 59.719 33.333 0.00 0.00 0.00 2.87
2537 2812 6.988622 TGTTTAACCAAGTTTCGAGAAGAA 57.011 33.333 0.00 0.00 37.01 2.52
2538 2813 7.380431 TGTTTAACCAAGTTTCGAGAAGAAA 57.620 32.000 0.00 0.00 45.76 2.52
2551 2826 6.363577 TCGAGAAGAAACATATGCAATTCC 57.636 37.500 1.58 0.00 0.00 3.01
2552 2827 5.879777 TCGAGAAGAAACATATGCAATTCCA 59.120 36.000 1.58 0.00 0.00 3.53
2553 2828 6.374053 TCGAGAAGAAACATATGCAATTCCAA 59.626 34.615 1.58 0.00 0.00 3.53
2554 2829 7.028962 CGAGAAGAAACATATGCAATTCCAAA 58.971 34.615 1.58 0.00 0.00 3.28
2555 2830 7.703621 CGAGAAGAAACATATGCAATTCCAAAT 59.296 33.333 1.58 0.00 0.00 2.32
2556 2831 8.712285 AGAAGAAACATATGCAATTCCAAATG 57.288 30.769 1.58 0.00 0.00 2.32
2557 2832 8.533657 AGAAGAAACATATGCAATTCCAAATGA 58.466 29.630 1.58 0.00 0.00 2.57
2558 2833 9.153721 GAAGAAACATATGCAATTCCAAATGAA 57.846 29.630 1.58 0.00 37.38 2.57
2559 2834 9.675464 AAGAAACATATGCAATTCCAAATGAAT 57.325 25.926 1.58 0.00 45.75 2.57
2606 2881 9.970395 TGATTGATCTAATGATACAAATTTGGC 57.030 29.630 21.74 11.21 32.19 4.52
2607 2882 9.970395 GATTGATCTAATGATACAAATTTGGCA 57.030 29.630 21.74 15.97 32.19 4.92
2647 2922 9.621629 TTTTCTGTATAAAAGAGTCTTGGTTGA 57.378 29.630 6.06 0.00 0.00 3.18
2648 2923 9.621629 TTTCTGTATAAAAGAGTCTTGGTTGAA 57.378 29.630 6.06 3.08 0.00 2.69
2649 2924 8.603242 TCTGTATAAAAGAGTCTTGGTTGAAC 57.397 34.615 6.06 1.82 0.00 3.18
2650 2925 8.208224 TCTGTATAAAAGAGTCTTGGTTGAACA 58.792 33.333 6.06 6.10 0.00 3.18
2651 2926 8.918202 TGTATAAAAGAGTCTTGGTTGAACAT 57.082 30.769 6.06 0.00 0.00 2.71
2652 2927 8.999431 TGTATAAAAGAGTCTTGGTTGAACATC 58.001 33.333 6.06 0.00 0.00 3.06
2653 2928 5.424121 AAAAGAGTCTTGGTTGAACATCG 57.576 39.130 6.06 0.00 0.00 3.84
2654 2929 4.336889 AAGAGTCTTGGTTGAACATCGA 57.663 40.909 4.10 0.00 0.00 3.59
2655 2930 3.919216 AGAGTCTTGGTTGAACATCGAG 58.081 45.455 0.00 0.00 0.00 4.04
2656 2931 3.574396 AGAGTCTTGGTTGAACATCGAGA 59.426 43.478 0.00 0.00 0.00 4.04
2657 2932 4.039245 AGAGTCTTGGTTGAACATCGAGAA 59.961 41.667 0.00 0.00 0.00 2.87
2658 2933 4.703897 AGTCTTGGTTGAACATCGAGAAA 58.296 39.130 0.00 0.00 0.00 2.52
2659 2934 5.123227 AGTCTTGGTTGAACATCGAGAAAA 58.877 37.500 0.00 0.00 0.00 2.29
2660 2935 5.237344 AGTCTTGGTTGAACATCGAGAAAAG 59.763 40.000 0.00 0.00 0.00 2.27
2661 2936 5.007724 GTCTTGGTTGAACATCGAGAAAAGT 59.992 40.000 0.00 0.00 0.00 2.66
2662 2937 5.588648 TCTTGGTTGAACATCGAGAAAAGTT 59.411 36.000 0.00 0.00 0.00 2.66
2663 2938 6.764085 TCTTGGTTGAACATCGAGAAAAGTTA 59.236 34.615 0.00 0.00 0.00 2.24
2664 2939 6.539649 TGGTTGAACATCGAGAAAAGTTAG 57.460 37.500 0.00 0.00 0.00 2.34
2665 2940 6.285224 TGGTTGAACATCGAGAAAAGTTAGA 58.715 36.000 0.00 0.00 0.00 2.10
2666 2941 6.202188 TGGTTGAACATCGAGAAAAGTTAGAC 59.798 38.462 0.00 0.00 0.00 2.59
2667 2942 6.424207 GGTTGAACATCGAGAAAAGTTAGACT 59.576 38.462 0.00 0.00 0.00 3.24
2668 2943 7.359347 GGTTGAACATCGAGAAAAGTTAGACTC 60.359 40.741 0.00 0.00 0.00 3.36
2669 2944 6.982852 TGAACATCGAGAAAAGTTAGACTCT 58.017 36.000 0.00 0.00 0.00 3.24
2670 2945 7.085116 TGAACATCGAGAAAAGTTAGACTCTC 58.915 38.462 0.00 0.00 0.00 3.20
2671 2946 6.576662 ACATCGAGAAAAGTTAGACTCTCA 57.423 37.500 0.00 0.00 35.12 3.27
2672 2947 6.982852 ACATCGAGAAAAGTTAGACTCTCAA 58.017 36.000 0.00 0.00 35.12 3.02
2673 2948 7.434492 ACATCGAGAAAAGTTAGACTCTCAAA 58.566 34.615 0.00 0.00 35.12 2.69
2674 2949 7.926555 ACATCGAGAAAAGTTAGACTCTCAAAA 59.073 33.333 0.00 0.00 35.12 2.44
2675 2950 8.765219 CATCGAGAAAAGTTAGACTCTCAAAAA 58.235 33.333 0.00 0.00 35.12 1.94
2695 2970 5.494632 AAAAACTAATATGCACGTAGGGC 57.505 39.130 0.00 0.00 0.00 5.19
2696 2971 2.833631 ACTAATATGCACGTAGGGCC 57.166 50.000 0.00 0.00 0.00 5.80
2697 2972 1.346722 ACTAATATGCACGTAGGGCCC 59.653 52.381 16.46 16.46 0.00 5.80
2698 2973 1.346395 CTAATATGCACGTAGGGCCCA 59.654 52.381 27.56 7.27 0.00 5.36
2699 2974 0.108585 AATATGCACGTAGGGCCCAG 59.891 55.000 27.56 17.60 0.00 4.45
2700 2975 1.768684 ATATGCACGTAGGGCCCAGG 61.769 60.000 27.56 17.60 0.00 4.45
2719 2994 2.678580 CCGGGGCGTGGGAAATTT 60.679 61.111 0.00 0.00 0.00 1.82
2720 2995 2.571231 CGGGGCGTGGGAAATTTG 59.429 61.111 0.00 0.00 0.00 2.32
2721 2996 2.272447 CGGGGCGTGGGAAATTTGT 61.272 57.895 0.00 0.00 0.00 2.83
2722 2997 1.811645 CGGGGCGTGGGAAATTTGTT 61.812 55.000 0.00 0.00 0.00 2.83
2723 2998 0.394938 GGGGCGTGGGAAATTTGTTT 59.605 50.000 0.00 0.00 0.00 2.83
2724 2999 1.606994 GGGGCGTGGGAAATTTGTTTC 60.607 52.381 0.00 0.00 0.00 2.78
2741 3016 8.934023 ATTTGTTTCCAACTACCTAGATTTCA 57.066 30.769 0.00 0.00 0.00 2.69
2742 3017 8.754991 TTTGTTTCCAACTACCTAGATTTCAA 57.245 30.769 0.00 0.00 0.00 2.69
2743 3018 7.979444 TGTTTCCAACTACCTAGATTTCAAG 57.021 36.000 0.00 0.00 0.00 3.02
2744 3019 7.514721 TGTTTCCAACTACCTAGATTTCAAGT 58.485 34.615 0.00 0.00 0.00 3.16
2745 3020 7.996644 TGTTTCCAACTACCTAGATTTCAAGTT 59.003 33.333 0.00 0.00 0.00 2.66
2746 3021 7.979444 TTCCAACTACCTAGATTTCAAGTTG 57.021 36.000 0.00 0.00 42.05 3.16
2748 3023 6.743575 CAACTACCTAGATTTCAAGTTGGG 57.256 41.667 2.34 0.00 39.90 4.12
2749 3024 4.844884 ACTACCTAGATTTCAAGTTGGGC 58.155 43.478 2.34 0.00 0.00 5.36
2750 3025 3.087370 ACCTAGATTTCAAGTTGGGCC 57.913 47.619 2.34 0.00 0.00 5.80
2751 3026 2.291605 ACCTAGATTTCAAGTTGGGCCC 60.292 50.000 17.59 17.59 0.00 5.80
2752 3027 2.017049 CTAGATTTCAAGTTGGGCCCG 58.983 52.381 19.37 1.40 0.00 6.13
2753 3028 0.611896 AGATTTCAAGTTGGGCCCGG 60.612 55.000 19.37 3.92 0.00 5.73
2754 3029 1.604147 GATTTCAAGTTGGGCCCGGG 61.604 60.000 19.09 19.09 0.00 5.73
2755 3030 3.819016 TTTCAAGTTGGGCCCGGGG 62.819 63.158 25.28 9.31 0.00 5.73
2759 3034 3.876255 AAGTTGGGCCCGGGGTCTA 62.876 63.158 25.28 9.12 0.00 2.59
2760 3035 3.793888 GTTGGGCCCGGGGTCTAG 61.794 72.222 25.28 0.00 0.00 2.43
2772 3047 2.556286 GGTCTAGCCCAACAAGCAC 58.444 57.895 0.00 0.00 0.00 4.40
2773 3048 0.036875 GGTCTAGCCCAACAAGCACT 59.963 55.000 0.00 0.00 0.00 4.40
2774 3049 1.160137 GTCTAGCCCAACAAGCACTG 58.840 55.000 0.00 0.00 0.00 3.66
2775 3050 0.606401 TCTAGCCCAACAAGCACTGC 60.606 55.000 0.00 0.00 0.00 4.40
2776 3051 0.890542 CTAGCCCAACAAGCACTGCA 60.891 55.000 3.30 0.00 0.00 4.41
2777 3052 1.172180 TAGCCCAACAAGCACTGCAC 61.172 55.000 3.30 0.00 0.00 4.57
2778 3053 2.332514 CCCAACAAGCACTGCACG 59.667 61.111 3.30 0.00 0.00 5.34
2779 3054 2.353839 CCAACAAGCACTGCACGC 60.354 61.111 3.30 0.00 0.00 5.34
2780 3055 2.408428 CAACAAGCACTGCACGCA 59.592 55.556 3.30 0.00 0.00 5.24
2781 3056 1.226632 CAACAAGCACTGCACGCAA 60.227 52.632 3.30 0.00 0.00 4.85
2782 3057 1.226660 AACAAGCACTGCACGCAAC 60.227 52.632 3.30 0.00 0.00 4.17
2783 3058 2.353839 CAAGCACTGCACGCAACC 60.354 61.111 3.30 0.00 0.00 3.77
2784 3059 2.828095 AAGCACTGCACGCAACCA 60.828 55.556 3.30 0.00 0.00 3.67
2785 3060 3.124798 AAGCACTGCACGCAACCAC 62.125 57.895 3.30 0.00 0.00 4.16
2786 3061 4.962122 GCACTGCACGCAACCACG 62.962 66.667 0.00 0.00 39.50 4.94
2787 3062 4.962122 CACTGCACGCAACCACGC 62.962 66.667 0.00 0.00 36.19 5.34
2789 3064 4.962122 CTGCACGCAACCACGCAC 62.962 66.667 0.00 0.00 36.19 5.34
2792 3067 3.931130 CACGCAACCACGCACGAA 61.931 61.111 0.00 0.00 36.19 3.85
2793 3068 3.636043 ACGCAACCACGCACGAAG 61.636 61.111 0.00 0.00 36.19 3.79
2794 3069 4.368808 CGCAACCACGCACGAAGG 62.369 66.667 0.00 0.69 0.00 3.46
2795 3070 4.025401 GCAACCACGCACGAAGGG 62.025 66.667 0.00 0.00 0.00 3.95
2796 3071 2.590575 CAACCACGCACGAAGGGT 60.591 61.111 0.00 0.00 45.35 4.34
2797 3072 2.280592 AACCACGCACGAAGGGTC 60.281 61.111 0.00 0.00 42.14 4.46
2798 3073 3.819877 AACCACGCACGAAGGGTCC 62.820 63.158 0.00 0.00 42.14 4.46
2800 3075 4.351938 CACGCACGAAGGGTCCGA 62.352 66.667 0.00 0.00 42.14 4.55
2801 3076 3.608662 ACGCACGAAGGGTCCGAA 61.609 61.111 0.00 0.00 39.51 4.30
2802 3077 2.809601 CGCACGAAGGGTCCGAAG 60.810 66.667 0.00 0.00 0.00 3.79
2803 3078 2.654877 GCACGAAGGGTCCGAAGA 59.345 61.111 0.00 0.00 0.00 2.87
2804 3079 1.446272 GCACGAAGGGTCCGAAGAG 60.446 63.158 0.00 0.00 0.00 2.85
2805 3080 1.215647 CACGAAGGGTCCGAAGAGG 59.784 63.158 0.00 0.00 42.97 3.69
2806 3081 2.184579 CGAAGGGTCCGAAGAGGC 59.815 66.667 0.00 0.00 40.77 4.70
2807 3082 2.184579 GAAGGGTCCGAAGAGGCG 59.815 66.667 0.00 0.00 40.77 5.52
2868 3143 2.167918 GACGTCGCTTCGCACAAC 59.832 61.111 0.00 0.00 0.00 3.32
2873 3148 0.787787 GTCGCTTCGCACAACATACA 59.212 50.000 0.00 0.00 0.00 2.29
2876 3151 1.070242 CGCTTCGCACAACATACACAA 60.070 47.619 0.00 0.00 0.00 3.33
2882 3157 2.727278 CGCACAACATACACAACGAGTA 59.273 45.455 0.00 0.00 0.00 2.59
2967 3305 5.627499 TGGCACTGTAGCAAAAATAAGAG 57.373 39.130 4.98 0.00 35.83 2.85
2971 3309 7.145323 GGCACTGTAGCAAAAATAAGAGAAAA 58.855 34.615 4.98 0.00 35.83 2.29
2972 3310 7.814587 GGCACTGTAGCAAAAATAAGAGAAAAT 59.185 33.333 4.98 0.00 35.83 1.82
2973 3311 9.840427 GCACTGTAGCAAAAATAAGAGAAAATA 57.160 29.630 0.00 0.00 0.00 1.40
2977 3315 9.834628 TGTAGCAAAAATAAGAGAAAATAACGG 57.165 29.630 0.00 0.00 0.00 4.44
2980 3318 9.974980 AGCAAAAATAAGAGAAAATAACGGAAA 57.025 25.926 0.00 0.00 0.00 3.13
2988 3326 6.206498 AGAGAAAATAACGGAAAAGCAACAC 58.794 36.000 0.00 0.00 0.00 3.32
2992 3330 2.050442 CGGAAAAGCAACACGCCC 60.050 61.111 0.00 0.00 44.04 6.13
3027 3368 2.761208 ACTCTCCTCACGGTAATGAAGG 59.239 50.000 0.00 0.00 0.00 3.46
3031 3372 1.656652 CTCACGGTAATGAAGGGCTG 58.343 55.000 0.00 0.00 0.00 4.85
3056 3397 5.944599 CCAATAGCCATCTGAGCTGATAATT 59.055 40.000 0.00 0.00 41.71 1.40
3077 3422 5.611796 TTGTGACTAATTTGCAGCACTAG 57.388 39.130 0.00 0.00 0.00 2.57
3097 3526 7.596995 GCACTAGTATCTAAGAACTAGCCATTG 59.403 40.741 13.39 8.11 45.99 2.82
3103 3532 2.584835 AGAACTAGCCATTGTGCCAA 57.415 45.000 0.00 0.00 0.00 4.52
3121 3550 5.988561 GTGCCAAAATTCAACACCTTTGATA 59.011 36.000 0.00 0.00 31.77 2.15
3228 3734 9.993881 CGTGAACAAGTTTTGAAATTCAATATC 57.006 29.630 9.41 3.70 36.11 1.63
3353 3859 8.735692 ACAATGTGAACAATTTTTCCATTTCT 57.264 26.923 13.69 5.07 30.41 2.52
3354 3860 9.176460 ACAATGTGAACAATTTTTCCATTTCTT 57.824 25.926 13.69 4.67 30.41 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.002583 TCTGTGCTCCATCCGCCA 61.003 61.111 0.00 0.00 0.00 5.69
90 91 4.575973 GCATCCTCGGCTGCCCAT 62.576 66.667 14.12 0.00 31.82 4.00
108 109 2.946650 CCACCATCCCACCCCCTT 60.947 66.667 0.00 0.00 0.00 3.95
117 118 2.124695 GGTCTTCGGCCACCATCC 60.125 66.667 2.24 0.00 32.33 3.51
141 142 3.049080 GCCTTTCCGGATCCTGGCT 62.049 63.158 22.20 0.00 37.58 4.75
190 191 3.971702 AGCTTGCCTGGTGTCCCC 61.972 66.667 0.00 0.00 0.00 4.81
207 208 0.693049 GTCCCCTTCCAGCTTCTTCA 59.307 55.000 0.00 0.00 0.00 3.02
257 258 4.195334 GGCATCCATCCCGGTGCT 62.195 66.667 11.70 0.00 39.99 4.40
266 267 3.598747 TTGGTTGGCCGGCATCCAT 62.599 57.895 30.85 0.00 37.67 3.41
341 342 1.289066 CGAACTGCGTCTCCTTCCA 59.711 57.895 0.00 0.00 34.64 3.53
345 346 1.901948 TGACCGAACTGCGTCTCCT 60.902 57.895 0.00 0.00 38.67 3.69
465 466 2.266055 CTGCGTCTCCCTTCACCC 59.734 66.667 0.00 0.00 0.00 4.61
508 509 4.704833 GGCGGCTGTCTCCTGCAA 62.705 66.667 0.00 0.00 37.27 4.08
538 539 0.741221 GTTGCATCTCGGTGGTCCTC 60.741 60.000 0.00 0.00 0.00 3.71
585 586 6.740110 ACGAATCAGGACTAATGTGAGTATC 58.260 40.000 0.00 0.00 0.00 2.24
586 587 6.716934 ACGAATCAGGACTAATGTGAGTAT 57.283 37.500 0.00 0.00 0.00 2.12
587 588 7.201794 CCTTACGAATCAGGACTAATGTGAGTA 60.202 40.741 0.00 0.00 30.81 2.59
588 589 6.405953 CCTTACGAATCAGGACTAATGTGAGT 60.406 42.308 0.00 0.00 30.81 3.41
589 590 5.980116 CCTTACGAATCAGGACTAATGTGAG 59.020 44.000 0.00 0.00 30.81 3.51
590 591 5.681437 GCCTTACGAATCAGGACTAATGTGA 60.681 44.000 0.00 0.00 30.81 3.58
591 592 4.508124 GCCTTACGAATCAGGACTAATGTG 59.492 45.833 0.00 0.00 30.81 3.21
592 593 4.406003 AGCCTTACGAATCAGGACTAATGT 59.594 41.667 0.00 0.00 30.81 2.71
593 594 4.950050 AGCCTTACGAATCAGGACTAATG 58.050 43.478 0.00 0.00 30.81 1.90
594 595 5.010820 GGTAGCCTTACGAATCAGGACTAAT 59.989 44.000 0.00 0.00 30.81 1.73
595 596 4.340381 GGTAGCCTTACGAATCAGGACTAA 59.660 45.833 0.00 0.00 30.81 2.24
596 597 3.887716 GGTAGCCTTACGAATCAGGACTA 59.112 47.826 0.00 0.00 30.81 2.59
597 598 2.694109 GGTAGCCTTACGAATCAGGACT 59.306 50.000 0.00 0.00 30.81 3.85
598 599 2.543238 CGGTAGCCTTACGAATCAGGAC 60.543 54.545 0.00 0.00 30.81 3.85
599 600 1.679680 CGGTAGCCTTACGAATCAGGA 59.320 52.381 0.00 0.00 30.81 3.86
600 601 1.269621 CCGGTAGCCTTACGAATCAGG 60.270 57.143 0.00 0.00 0.00 3.86
601 602 1.269621 CCCGGTAGCCTTACGAATCAG 60.270 57.143 0.00 0.00 0.00 2.90
602 603 0.748450 CCCGGTAGCCTTACGAATCA 59.252 55.000 0.00 0.00 0.00 2.57
603 604 1.035139 TCCCGGTAGCCTTACGAATC 58.965 55.000 0.00 0.00 0.00 2.52
604 605 0.749049 GTCCCGGTAGCCTTACGAAT 59.251 55.000 0.00 0.00 0.00 3.34
605 606 0.323725 AGTCCCGGTAGCCTTACGAA 60.324 55.000 0.00 0.00 0.00 3.85
606 607 0.546122 TAGTCCCGGTAGCCTTACGA 59.454 55.000 0.00 0.00 0.00 3.43
607 608 1.613836 ATAGTCCCGGTAGCCTTACG 58.386 55.000 0.00 0.00 0.00 3.18
608 609 2.547430 GCAATAGTCCCGGTAGCCTTAC 60.547 54.545 0.00 0.00 0.00 2.34
609 610 1.690352 GCAATAGTCCCGGTAGCCTTA 59.310 52.381 0.00 0.00 0.00 2.69
610 611 0.468648 GCAATAGTCCCGGTAGCCTT 59.531 55.000 0.00 0.00 0.00 4.35
611 612 0.398664 AGCAATAGTCCCGGTAGCCT 60.399 55.000 0.00 0.00 0.00 4.58
612 613 0.033642 GAGCAATAGTCCCGGTAGCC 59.966 60.000 0.00 0.00 0.00 3.93
613 614 1.041437 AGAGCAATAGTCCCGGTAGC 58.959 55.000 0.00 0.00 0.00 3.58
614 615 1.341531 CCAGAGCAATAGTCCCGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
615 616 1.342674 ACCAGAGCAATAGTCCCGGTA 60.343 52.381 0.00 0.00 0.00 4.02
616 617 0.617820 ACCAGAGCAATAGTCCCGGT 60.618 55.000 0.00 0.00 0.00 5.28
617 618 0.105039 GACCAGAGCAATAGTCCCGG 59.895 60.000 0.00 0.00 0.00 5.73
618 619 1.115467 AGACCAGAGCAATAGTCCCG 58.885 55.000 0.00 0.00 0.00 5.14
619 620 1.139853 CCAGACCAGAGCAATAGTCCC 59.860 57.143 0.00 0.00 0.00 4.46
620 621 1.474143 GCCAGACCAGAGCAATAGTCC 60.474 57.143 0.00 0.00 0.00 3.85
621 622 1.474143 GGCCAGACCAGAGCAATAGTC 60.474 57.143 0.00 0.00 38.86 2.59
622 623 0.543749 GGCCAGACCAGAGCAATAGT 59.456 55.000 0.00 0.00 38.86 2.12
623 624 0.543277 TGGCCAGACCAGAGCAATAG 59.457 55.000 0.00 0.00 46.36 1.73
624 625 2.695561 TGGCCAGACCAGAGCAATA 58.304 52.632 0.00 0.00 46.36 1.90
625 626 3.499406 TGGCCAGACCAGAGCAAT 58.501 55.556 0.00 0.00 46.36 3.56
633 634 1.527433 GCTTTGGTTCTGGCCAGACC 61.527 60.000 35.26 33.02 40.01 3.85
634 635 1.527433 GGCTTTGGTTCTGGCCAGAC 61.527 60.000 35.26 26.67 43.59 3.51
635 636 1.228552 GGCTTTGGTTCTGGCCAGA 60.229 57.895 32.00 32.00 43.59 3.86
636 637 2.278330 GGGCTTTGGTTCTGGCCAG 61.278 63.158 27.87 27.87 45.68 4.85
637 638 2.203625 GGGCTTTGGTTCTGGCCA 60.204 61.111 4.71 4.71 45.68 5.36
638 639 2.118294 AGGGCTTTGGTTCTGGCC 59.882 61.111 0.00 0.00 45.34 5.36
639 640 1.115326 AACAGGGCTTTGGTTCTGGC 61.115 55.000 0.00 0.00 0.00 4.85
640 641 1.413118 AAACAGGGCTTTGGTTCTGG 58.587 50.000 0.00 0.00 0.00 3.86
641 642 2.695147 AGAAAACAGGGCTTTGGTTCTG 59.305 45.455 8.67 0.00 30.22 3.02
642 643 3.032265 AGAAAACAGGGCTTTGGTTCT 57.968 42.857 0.00 0.91 0.00 3.01
643 644 3.889538 AGTAGAAAACAGGGCTTTGGTTC 59.110 43.478 0.00 0.00 0.00 3.62
644 645 3.910989 AGTAGAAAACAGGGCTTTGGTT 58.089 40.909 0.00 0.00 0.00 3.67
645 646 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
646 647 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
647 648 5.305585 TCACTAGTAGAAAACAGGGCTTTG 58.694 41.667 3.59 0.00 0.00 2.77
648 649 5.562298 TCACTAGTAGAAAACAGGGCTTT 57.438 39.130 3.59 0.00 0.00 3.51
649 650 5.763876 ATCACTAGTAGAAAACAGGGCTT 57.236 39.130 3.59 0.00 0.00 4.35
650 651 6.384305 ACATATCACTAGTAGAAAACAGGGCT 59.616 38.462 3.59 0.00 0.00 5.19
651 652 6.480320 CACATATCACTAGTAGAAAACAGGGC 59.520 42.308 3.59 0.00 0.00 5.19
652 653 7.556844 ACACATATCACTAGTAGAAAACAGGG 58.443 38.462 3.59 0.00 0.00 4.45
653 654 9.436957 AAACACATATCACTAGTAGAAAACAGG 57.563 33.333 3.59 0.00 0.00 4.00
655 656 9.772973 ACAAACACATATCACTAGTAGAAAACA 57.227 29.630 3.59 0.00 0.00 2.83
659 660 9.990360 TGAAACAAACACATATCACTAGTAGAA 57.010 29.630 3.59 0.00 0.00 2.10
660 661 9.419297 GTGAAACAAACACATATCACTAGTAGA 57.581 33.333 3.59 0.00 38.05 2.59
735 740 0.250295 CTTTTGGAGACCGAGCACCA 60.250 55.000 0.00 0.00 0.00 4.17
736 741 1.578206 GCTTTTGGAGACCGAGCACC 61.578 60.000 0.00 0.00 33.68 5.01
809 816 4.588528 GGTAGGTATTCCGGTATGTTGGTA 59.411 45.833 0.00 0.00 39.05 3.25
812 819 3.388676 TGGGTAGGTATTCCGGTATGTTG 59.611 47.826 0.00 0.00 39.05 3.33
813 820 3.644738 CTGGGTAGGTATTCCGGTATGTT 59.355 47.826 0.00 0.00 39.05 2.71
816 823 2.254508 GCTGGGTAGGTATTCCGGTAT 58.745 52.381 0.00 0.00 39.05 2.73
817 824 1.063038 TGCTGGGTAGGTATTCCGGTA 60.063 52.381 0.00 0.00 39.05 4.02
818 825 0.325860 TGCTGGGTAGGTATTCCGGT 60.326 55.000 0.00 0.00 39.05 5.28
820 827 0.249322 CGTGCTGGGTAGGTATTCCG 60.249 60.000 0.00 0.00 39.05 4.30
821 828 0.828677 ACGTGCTGGGTAGGTATTCC 59.171 55.000 0.00 0.00 0.00 3.01
822 829 1.935933 CACGTGCTGGGTAGGTATTC 58.064 55.000 0.82 0.00 0.00 1.75
823 830 0.107848 GCACGTGCTGGGTAGGTATT 60.108 55.000 32.55 0.00 38.21 1.89
824 831 1.520666 GCACGTGCTGGGTAGGTAT 59.479 57.895 32.55 0.00 38.21 2.73
899 1100 4.442706 AGTGCATGTTATACACTGTAGGC 58.557 43.478 2.57 0.00 42.83 3.93
952 1153 3.987868 GGATGTGCATCGTATATTCGTGT 59.012 43.478 6.14 0.00 38.69 4.49
953 1154 3.367932 GGGATGTGCATCGTATATTCGTG 59.632 47.826 6.14 1.71 38.69 4.35
1186 1417 1.743321 GATGCCCTGAGGTCGGAGAG 61.743 65.000 0.00 0.00 36.95 3.20
1659 1923 1.796796 GCTGCTGGTCACGAATTCC 59.203 57.895 0.00 0.00 0.00 3.01
1662 1926 2.029288 CACGCTGCTGGTCACGAAT 61.029 57.895 0.00 0.00 0.00 3.34
1823 2098 2.114616 AGTAGCAGGACCAGATGAAGG 58.885 52.381 0.00 0.00 0.00 3.46
1860 2135 2.655090 TTGCATGACCTTGTTCCTGA 57.345 45.000 0.00 0.00 0.00 3.86
1870 2145 2.890945 AGTGGGTAGTTTTTGCATGACC 59.109 45.455 0.00 0.00 0.00 4.02
1872 2147 3.572255 GGAAGTGGGTAGTTTTTGCATGA 59.428 43.478 0.00 0.00 0.00 3.07
1875 2150 3.117663 AGAGGAAGTGGGTAGTTTTTGCA 60.118 43.478 0.00 0.00 0.00 4.08
2081 2356 2.442272 ATCCGTCCCACCTCTCCG 60.442 66.667 0.00 0.00 0.00 4.63
2387 2662 6.661805 TCCCATTACCCACAAAAGAAATACTC 59.338 38.462 0.00 0.00 0.00 2.59
2391 2666 6.081356 TCTTCCCATTACCCACAAAAGAAAT 58.919 36.000 0.00 0.00 0.00 2.17
2392 2667 5.459505 TCTTCCCATTACCCACAAAAGAAA 58.540 37.500 0.00 0.00 0.00 2.52
2393 2668 5.068215 TCTTCCCATTACCCACAAAAGAA 57.932 39.130 0.00 0.00 0.00 2.52
2394 2669 4.105697 ACTCTTCCCATTACCCACAAAAGA 59.894 41.667 0.00 0.00 0.00 2.52
2395 2670 4.407365 ACTCTTCCCATTACCCACAAAAG 58.593 43.478 0.00 0.00 0.00 2.27
2396 2671 4.403734 GACTCTTCCCATTACCCACAAAA 58.596 43.478 0.00 0.00 0.00 2.44
2397 2672 3.245122 GGACTCTTCCCATTACCCACAAA 60.245 47.826 0.00 0.00 35.57 2.83
2398 2673 2.307686 GGACTCTTCCCATTACCCACAA 59.692 50.000 0.00 0.00 35.57 3.33
2399 2674 1.913419 GGACTCTTCCCATTACCCACA 59.087 52.381 0.00 0.00 35.57 4.17
2400 2675 2.197465 AGGACTCTTCCCATTACCCAC 58.803 52.381 0.00 0.00 44.10 4.61
2401 2676 2.661176 AGGACTCTTCCCATTACCCA 57.339 50.000 0.00 0.00 44.10 4.51
2402 2677 4.720273 TCTAAAGGACTCTTCCCATTACCC 59.280 45.833 0.00 0.00 44.10 3.69
2403 2678 5.952347 TCTAAAGGACTCTTCCCATTACC 57.048 43.478 0.00 0.00 44.10 2.85
2404 2679 6.099845 TCCATCTAAAGGACTCTTCCCATTAC 59.900 42.308 0.00 0.00 44.10 1.89
2405 2680 6.209774 TCCATCTAAAGGACTCTTCCCATTA 58.790 40.000 0.00 0.00 44.10 1.90
2406 2681 5.039645 TCCATCTAAAGGACTCTTCCCATT 58.960 41.667 0.00 0.00 44.10 3.16
2407 2682 4.635473 TCCATCTAAAGGACTCTTCCCAT 58.365 43.478 0.00 0.00 44.10 4.00
2408 2683 4.074799 TCCATCTAAAGGACTCTTCCCA 57.925 45.455 0.00 0.00 44.10 4.37
2417 2692 2.158957 GCATGTCGGTCCATCTAAAGGA 60.159 50.000 0.00 0.00 0.00 3.36
2418 2693 2.213499 GCATGTCGGTCCATCTAAAGG 58.787 52.381 0.00 0.00 0.00 3.11
2419 2694 2.905075 TGCATGTCGGTCCATCTAAAG 58.095 47.619 0.00 0.00 0.00 1.85
2420 2695 3.270027 CTTGCATGTCGGTCCATCTAAA 58.730 45.455 0.00 0.00 0.00 1.85
2421 2696 2.236146 ACTTGCATGTCGGTCCATCTAA 59.764 45.455 0.00 0.00 0.00 2.10
2422 2697 1.831106 ACTTGCATGTCGGTCCATCTA 59.169 47.619 0.00 0.00 0.00 1.98
2423 2698 0.615331 ACTTGCATGTCGGTCCATCT 59.385 50.000 0.00 0.00 0.00 2.90
2424 2699 1.398390 GAACTTGCATGTCGGTCCATC 59.602 52.381 5.61 0.00 0.00 3.51
2425 2700 1.003580 AGAACTTGCATGTCGGTCCAT 59.996 47.619 5.61 0.00 0.00 3.41
2426 2701 0.396435 AGAACTTGCATGTCGGTCCA 59.604 50.000 5.61 0.00 0.00 4.02
2427 2702 1.197721 CAAGAACTTGCATGTCGGTCC 59.802 52.381 5.61 0.00 33.45 4.46
2428 2703 1.873591 ACAAGAACTTGCATGTCGGTC 59.126 47.619 13.50 0.46 44.03 4.79
2429 2704 1.603802 CACAAGAACTTGCATGTCGGT 59.396 47.619 13.50 0.00 44.03 4.69
2430 2705 1.603802 ACACAAGAACTTGCATGTCGG 59.396 47.619 13.50 0.00 44.03 4.79
2431 2706 3.038017 CAACACAAGAACTTGCATGTCG 58.962 45.455 13.50 0.00 44.03 4.35
2432 2707 2.791004 GCAACACAAGAACTTGCATGTC 59.209 45.455 13.50 0.51 44.03 3.06
2433 2708 2.166050 TGCAACACAAGAACTTGCATGT 59.834 40.909 13.50 9.11 44.09 3.21
2434 2709 2.792674 CTGCAACACAAGAACTTGCATG 59.207 45.455 13.50 10.94 46.85 4.06
2435 2710 2.428171 ACTGCAACACAAGAACTTGCAT 59.572 40.909 13.50 0.71 46.85 3.96
2436 2711 1.818060 ACTGCAACACAAGAACTTGCA 59.182 42.857 13.50 4.38 46.15 4.08
2437 2712 2.566952 ACTGCAACACAAGAACTTGC 57.433 45.000 13.50 2.05 44.03 4.01
2438 2713 4.614555 TGTACTGCAACACAAGAACTTG 57.385 40.909 12.22 12.22 45.58 3.16
2448 2723 3.324846 AGAATGGAGAGTGTACTGCAACA 59.675 43.478 0.00 0.00 41.12 3.33
2449 2724 3.931578 AGAATGGAGAGTGTACTGCAAC 58.068 45.455 0.00 0.00 41.12 4.17
2450 2725 5.738619 TTAGAATGGAGAGTGTACTGCAA 57.261 39.130 0.00 0.00 41.12 4.08
2451 2726 5.738619 TTTAGAATGGAGAGTGTACTGCA 57.261 39.130 0.00 0.00 41.89 4.41
2452 2727 7.764443 TGTATTTTAGAATGGAGAGTGTACTGC 59.236 37.037 0.00 0.00 0.00 4.40
2453 2728 9.307121 CTGTATTTTAGAATGGAGAGTGTACTG 57.693 37.037 0.00 0.00 0.00 2.74
2454 2729 9.036980 ACTGTATTTTAGAATGGAGAGTGTACT 57.963 33.333 0.00 0.00 0.00 2.73
2455 2730 9.088512 CACTGTATTTTAGAATGGAGAGTGTAC 57.911 37.037 0.00 0.00 0.00 2.90
2456 2731 7.764443 GCACTGTATTTTAGAATGGAGAGTGTA 59.236 37.037 0.00 0.00 0.00 2.90
2457 2732 6.595716 GCACTGTATTTTAGAATGGAGAGTGT 59.404 38.462 0.00 0.00 0.00 3.55
2458 2733 6.237942 CGCACTGTATTTTAGAATGGAGAGTG 60.238 42.308 0.00 0.00 0.00 3.51
2459 2734 5.812642 CGCACTGTATTTTAGAATGGAGAGT 59.187 40.000 0.00 0.00 0.00 3.24
2460 2735 5.812642 ACGCACTGTATTTTAGAATGGAGAG 59.187 40.000 0.00 0.00 0.00 3.20
2461 2736 5.730550 ACGCACTGTATTTTAGAATGGAGA 58.269 37.500 0.00 0.00 0.00 3.71
2462 2737 7.715265 ATACGCACTGTATTTTAGAATGGAG 57.285 36.000 0.00 0.00 41.01 3.86
2504 2779 8.652463 CGAAACTTGGTTAAACATTGAAAGTTT 58.348 29.630 16.43 16.43 44.60 2.66
2505 2780 8.030106 TCGAAACTTGGTTAAACATTGAAAGTT 58.970 29.630 0.00 0.00 37.84 2.66
2506 2781 7.540299 TCGAAACTTGGTTAAACATTGAAAGT 58.460 30.769 0.00 0.00 0.00 2.66
2507 2782 7.913297 TCTCGAAACTTGGTTAAACATTGAAAG 59.087 33.333 0.00 0.00 0.00 2.62
2508 2783 7.763356 TCTCGAAACTTGGTTAAACATTGAAA 58.237 30.769 0.00 0.00 0.00 2.69
2509 2784 7.323049 TCTCGAAACTTGGTTAAACATTGAA 57.677 32.000 0.00 0.00 0.00 2.69
2510 2785 6.928979 TCTCGAAACTTGGTTAAACATTGA 57.071 33.333 0.00 0.00 0.00 2.57
2511 2786 7.414436 TCTTCTCGAAACTTGGTTAAACATTG 58.586 34.615 0.00 0.00 0.00 2.82
2512 2787 7.562454 TCTTCTCGAAACTTGGTTAAACATT 57.438 32.000 0.00 0.00 0.00 2.71
2513 2788 7.562454 TTCTTCTCGAAACTTGGTTAAACAT 57.438 32.000 0.00 0.00 0.00 2.71
2514 2789 6.988622 TTCTTCTCGAAACTTGGTTAAACA 57.011 33.333 0.00 0.00 0.00 2.83
2526 2801 7.094420 TGGAATTGCATATGTTTCTTCTCGAAA 60.094 33.333 4.29 0.00 39.23 3.46
2527 2802 6.374053 TGGAATTGCATATGTTTCTTCTCGAA 59.626 34.615 4.29 0.00 0.00 3.71
2528 2803 5.879777 TGGAATTGCATATGTTTCTTCTCGA 59.120 36.000 4.29 0.00 0.00 4.04
2529 2804 6.122850 TGGAATTGCATATGTTTCTTCTCG 57.877 37.500 4.29 0.00 0.00 4.04
2530 2805 8.814235 CATTTGGAATTGCATATGTTTCTTCTC 58.186 33.333 18.05 0.00 0.00 2.87
2531 2806 8.533657 TCATTTGGAATTGCATATGTTTCTTCT 58.466 29.630 22.85 0.00 0.00 2.85
2532 2807 8.706492 TCATTTGGAATTGCATATGTTTCTTC 57.294 30.769 22.85 3.29 0.00 2.87
2533 2808 9.675464 ATTCATTTGGAATTGCATATGTTTCTT 57.325 25.926 22.85 8.10 43.76 2.52
2580 2855 9.970395 GCCAAATTTGTATCATTAGATCAATCA 57.030 29.630 16.73 0.00 35.67 2.57
2581 2856 9.970395 TGCCAAATTTGTATCATTAGATCAATC 57.030 29.630 16.73 0.00 35.67 2.67
2621 2896 9.621629 TCAACCAAGACTCTTTTATACAGAAAA 57.378 29.630 0.00 0.00 0.00 2.29
2622 2897 9.621629 TTCAACCAAGACTCTTTTATACAGAAA 57.378 29.630 0.00 0.00 0.00 2.52
2623 2898 9.052759 GTTCAACCAAGACTCTTTTATACAGAA 57.947 33.333 0.00 0.00 0.00 3.02
2624 2899 8.208224 TGTTCAACCAAGACTCTTTTATACAGA 58.792 33.333 0.00 0.00 0.00 3.41
2625 2900 8.378172 TGTTCAACCAAGACTCTTTTATACAG 57.622 34.615 0.00 0.00 0.00 2.74
2626 2901 8.918202 ATGTTCAACCAAGACTCTTTTATACA 57.082 30.769 0.00 0.00 0.00 2.29
2627 2902 8.169268 CGATGTTCAACCAAGACTCTTTTATAC 58.831 37.037 0.00 0.00 0.00 1.47
2628 2903 8.092068 TCGATGTTCAACCAAGACTCTTTTATA 58.908 33.333 0.00 0.00 0.00 0.98
2629 2904 6.934645 TCGATGTTCAACCAAGACTCTTTTAT 59.065 34.615 0.00 0.00 0.00 1.40
2630 2905 6.285224 TCGATGTTCAACCAAGACTCTTTTA 58.715 36.000 0.00 0.00 0.00 1.52
2631 2906 5.123227 TCGATGTTCAACCAAGACTCTTTT 58.877 37.500 0.00 0.00 0.00 2.27
2632 2907 4.703897 TCGATGTTCAACCAAGACTCTTT 58.296 39.130 0.00 0.00 0.00 2.52
2633 2908 4.039245 TCTCGATGTTCAACCAAGACTCTT 59.961 41.667 0.00 0.00 0.00 2.85
2634 2909 3.574396 TCTCGATGTTCAACCAAGACTCT 59.426 43.478 0.00 0.00 0.00 3.24
2635 2910 3.914312 TCTCGATGTTCAACCAAGACTC 58.086 45.455 0.00 0.00 0.00 3.36
2636 2911 4.336889 TTCTCGATGTTCAACCAAGACT 57.663 40.909 0.00 0.00 0.00 3.24
2637 2912 5.007724 ACTTTTCTCGATGTTCAACCAAGAC 59.992 40.000 0.00 0.00 0.00 3.01
2638 2913 5.123227 ACTTTTCTCGATGTTCAACCAAGA 58.877 37.500 0.00 0.00 0.00 3.02
2639 2914 5.424121 ACTTTTCTCGATGTTCAACCAAG 57.576 39.130 0.00 0.00 0.00 3.61
2640 2915 5.828299 AACTTTTCTCGATGTTCAACCAA 57.172 34.783 0.00 0.00 0.00 3.67
2641 2916 6.202188 GTCTAACTTTTCTCGATGTTCAACCA 59.798 38.462 0.00 0.00 0.00 3.67
2642 2917 6.424207 AGTCTAACTTTTCTCGATGTTCAACC 59.576 38.462 0.00 0.00 0.00 3.77
2643 2918 7.382759 AGAGTCTAACTTTTCTCGATGTTCAAC 59.617 37.037 0.00 0.00 32.90 3.18
2644 2919 7.434492 AGAGTCTAACTTTTCTCGATGTTCAA 58.566 34.615 0.00 0.00 32.90 2.69
2645 2920 6.982852 AGAGTCTAACTTTTCTCGATGTTCA 58.017 36.000 0.00 0.00 32.90 3.18
2646 2921 7.085116 TGAGAGTCTAACTTTTCTCGATGTTC 58.915 38.462 0.00 0.00 39.08 3.18
2647 2922 6.982852 TGAGAGTCTAACTTTTCTCGATGTT 58.017 36.000 0.00 0.00 39.08 2.71
2648 2923 6.576662 TGAGAGTCTAACTTTTCTCGATGT 57.423 37.500 0.00 0.00 39.08 3.06
2649 2924 7.875316 TTTGAGAGTCTAACTTTTCTCGATG 57.125 36.000 0.00 0.00 39.08 3.84
2650 2925 8.888579 TTTTTGAGAGTCTAACTTTTCTCGAT 57.111 30.769 0.00 0.00 39.08 3.59
2673 2948 4.337274 GGCCCTACGTGCATATTAGTTTTT 59.663 41.667 0.00 0.00 0.00 1.94
2674 2949 3.881089 GGCCCTACGTGCATATTAGTTTT 59.119 43.478 0.00 0.00 0.00 2.43
2675 2950 3.473625 GGCCCTACGTGCATATTAGTTT 58.526 45.455 0.00 0.00 0.00 2.66
2676 2951 2.224450 GGGCCCTACGTGCATATTAGTT 60.224 50.000 17.04 0.00 0.00 2.24
2677 2952 1.346722 GGGCCCTACGTGCATATTAGT 59.653 52.381 17.04 0.00 0.00 2.24
2678 2953 1.346395 TGGGCCCTACGTGCATATTAG 59.654 52.381 25.70 0.00 0.00 1.73
2679 2954 1.346395 CTGGGCCCTACGTGCATATTA 59.654 52.381 25.70 0.00 0.00 0.98
2680 2955 0.108585 CTGGGCCCTACGTGCATATT 59.891 55.000 25.70 0.00 0.00 1.28
2681 2956 1.754745 CTGGGCCCTACGTGCATAT 59.245 57.895 25.70 0.00 0.00 1.78
2682 2957 2.439960 CCTGGGCCCTACGTGCATA 61.440 63.158 25.70 0.00 0.00 3.14
2683 2958 3.797353 CCTGGGCCCTACGTGCAT 61.797 66.667 25.70 0.00 0.00 3.96
2701 2976 4.751820 AATTTCCCACGCCCCGGG 62.752 66.667 15.80 15.80 46.03 5.73
2702 2977 2.678580 AAATTTCCCACGCCCCGG 60.679 61.111 0.00 0.00 0.00 5.73
2703 2978 1.811645 AACAAATTTCCCACGCCCCG 61.812 55.000 0.00 0.00 0.00 5.73
2704 2979 0.394938 AAACAAATTTCCCACGCCCC 59.605 50.000 0.00 0.00 0.00 5.80
2705 2980 1.790755 GAAACAAATTTCCCACGCCC 58.209 50.000 0.00 0.00 38.67 6.13
2721 2996 8.391075 CAACTTGAAATCTAGGTAGTTGGAAA 57.609 34.615 8.07 0.00 39.00 3.13
2722 2997 7.979444 CAACTTGAAATCTAGGTAGTTGGAA 57.021 36.000 8.07 0.00 39.00 3.53
2725 3000 5.123979 GCCCAACTTGAAATCTAGGTAGTTG 59.876 44.000 8.76 8.76 41.12 3.16
2726 3001 5.254115 GCCCAACTTGAAATCTAGGTAGTT 58.746 41.667 0.00 0.00 0.00 2.24
2727 3002 4.324331 GGCCCAACTTGAAATCTAGGTAGT 60.324 45.833 0.00 0.00 0.00 2.73
2728 3003 4.200092 GGCCCAACTTGAAATCTAGGTAG 58.800 47.826 0.00 0.00 0.00 3.18
2729 3004 3.053917 GGGCCCAACTTGAAATCTAGGTA 60.054 47.826 19.95 0.00 0.00 3.08
2730 3005 2.291605 GGGCCCAACTTGAAATCTAGGT 60.292 50.000 19.95 0.00 0.00 3.08
2731 3006 2.379005 GGGCCCAACTTGAAATCTAGG 58.621 52.381 19.95 0.00 0.00 3.02
2732 3007 2.017049 CGGGCCCAACTTGAAATCTAG 58.983 52.381 24.92 0.00 0.00 2.43
2733 3008 1.340600 CCGGGCCCAACTTGAAATCTA 60.341 52.381 24.92 0.00 0.00 1.98
2734 3009 0.611896 CCGGGCCCAACTTGAAATCT 60.612 55.000 24.92 0.00 0.00 2.40
2735 3010 1.604147 CCCGGGCCCAACTTGAAATC 61.604 60.000 24.92 0.00 0.00 2.17
2736 3011 1.609210 CCCGGGCCCAACTTGAAAT 60.609 57.895 24.92 0.00 0.00 2.17
2737 3012 2.203567 CCCGGGCCCAACTTGAAA 60.204 61.111 24.92 0.00 0.00 2.69
2738 3013 4.293671 CCCCGGGCCCAACTTGAA 62.294 66.667 24.92 0.00 0.00 2.69
2741 3016 3.876255 TAGACCCCGGGCCCAACTT 62.876 63.158 24.92 1.81 0.00 2.66
2742 3017 4.342086 TAGACCCCGGGCCCAACT 62.342 66.667 24.92 14.71 0.00 3.16
2743 3018 3.793888 CTAGACCCCGGGCCCAAC 61.794 72.222 24.92 7.58 0.00 3.77
2754 3029 0.036875 AGTGCTTGTTGGGCTAGACC 59.963 55.000 8.06 8.06 37.93 3.85
2755 3030 1.160137 CAGTGCTTGTTGGGCTAGAC 58.840 55.000 0.00 0.00 0.00 2.59
2756 3031 0.606401 GCAGTGCTTGTTGGGCTAGA 60.606 55.000 8.18 0.00 0.00 2.43
2757 3032 0.890542 TGCAGTGCTTGTTGGGCTAG 60.891 55.000 17.60 0.00 0.00 3.42
2758 3033 1.150308 TGCAGTGCTTGTTGGGCTA 59.850 52.632 17.60 0.00 0.00 3.93
2759 3034 2.123769 TGCAGTGCTTGTTGGGCT 60.124 55.556 17.60 0.00 0.00 5.19
2760 3035 2.028043 GTGCAGTGCTTGTTGGGC 59.972 61.111 17.60 0.00 0.00 5.36
2761 3036 2.332514 CGTGCAGTGCTTGTTGGG 59.667 61.111 17.60 0.00 0.00 4.12
2762 3037 2.353839 GCGTGCAGTGCTTGTTGG 60.354 61.111 17.60 0.28 0.00 3.77
2763 3038 1.226632 TTGCGTGCAGTGCTTGTTG 60.227 52.632 17.60 2.63 0.00 3.33
2764 3039 1.226660 GTTGCGTGCAGTGCTTGTT 60.227 52.632 17.60 0.00 0.00 2.83
2765 3040 2.408835 GTTGCGTGCAGTGCTTGT 59.591 55.556 17.60 0.00 0.00 3.16
2766 3041 2.353839 GGTTGCGTGCAGTGCTTG 60.354 61.111 17.60 9.69 0.00 4.01
2767 3042 2.828095 TGGTTGCGTGCAGTGCTT 60.828 55.556 17.60 0.00 0.00 3.91
2768 3043 3.585990 GTGGTTGCGTGCAGTGCT 61.586 61.111 17.60 0.00 0.00 4.40
2769 3044 4.962122 CGTGGTTGCGTGCAGTGC 62.962 66.667 8.58 8.58 0.00 4.40
2770 3045 4.962122 GCGTGGTTGCGTGCAGTG 62.962 66.667 0.00 0.00 0.00 3.66
2772 3047 4.962122 GTGCGTGGTTGCGTGCAG 62.962 66.667 0.00 0.00 38.14 4.41
2775 3050 3.838229 CTTCGTGCGTGGTTGCGTG 62.838 63.158 0.00 0.00 37.81 5.34
2776 3051 3.636043 CTTCGTGCGTGGTTGCGT 61.636 61.111 0.00 0.00 37.81 5.24
2777 3052 4.368808 CCTTCGTGCGTGGTTGCG 62.369 66.667 0.00 0.00 37.81 4.85
2778 3053 4.025401 CCCTTCGTGCGTGGTTGC 62.025 66.667 0.00 0.00 0.00 4.17
2779 3054 2.590575 ACCCTTCGTGCGTGGTTG 60.591 61.111 0.00 0.00 0.00 3.77
2780 3055 2.280592 GACCCTTCGTGCGTGGTT 60.281 61.111 5.18 0.00 0.00 3.67
2781 3056 4.309950 GGACCCTTCGTGCGTGGT 62.310 66.667 3.75 3.75 0.00 4.16
2786 3061 1.446272 CTCTTCGGACCCTTCGTGC 60.446 63.158 0.00 0.00 0.00 5.34
2787 3062 1.215647 CCTCTTCGGACCCTTCGTG 59.784 63.158 0.00 0.00 33.16 4.35
2788 3063 2.647158 GCCTCTTCGGACCCTTCGT 61.647 63.158 0.00 0.00 33.16 3.85
2789 3064 2.184579 GCCTCTTCGGACCCTTCG 59.815 66.667 0.00 0.00 33.16 3.79
2790 3065 2.184579 CGCCTCTTCGGACCCTTC 59.815 66.667 0.00 0.00 33.16 3.46
2798 3073 1.514443 GAACGAGACCGCCTCTTCG 60.514 63.158 0.00 0.00 39.78 3.79
2799 3074 1.514443 CGAACGAGACCGCCTCTTC 60.514 63.158 0.00 0.00 39.78 2.87
2800 3075 2.567049 CGAACGAGACCGCCTCTT 59.433 61.111 0.00 0.00 39.78 2.85
2801 3076 3.441290 CCGAACGAGACCGCCTCT 61.441 66.667 0.00 0.00 39.78 3.69
2802 3077 4.493747 CCCGAACGAGACCGCCTC 62.494 72.222 0.00 0.00 39.95 4.70
2804 3079 4.493747 CTCCCGAACGAGACCGCC 62.494 72.222 0.00 0.00 39.95 6.13
2806 3081 3.398353 GAGCTCCCGAACGAGACCG 62.398 68.421 0.87 0.00 42.50 4.79
2807 3082 2.490685 GAGCTCCCGAACGAGACC 59.509 66.667 0.87 0.00 30.97 3.85
2808 3083 0.747283 TAGGAGCTCCCGAACGAGAC 60.747 60.000 29.54 0.00 40.87 3.36
2809 3084 0.183014 ATAGGAGCTCCCGAACGAGA 59.817 55.000 29.54 5.00 40.87 4.04
2810 3085 1.536331 GTATAGGAGCTCCCGAACGAG 59.464 57.143 29.54 0.00 40.87 4.18
2811 3086 1.602311 GTATAGGAGCTCCCGAACGA 58.398 55.000 29.54 8.27 40.87 3.85
2812 3087 0.237761 CGTATAGGAGCTCCCGAACG 59.762 60.000 29.54 27.94 40.87 3.95
2868 3143 1.556564 CGGCCTACTCGTTGTGTATG 58.443 55.000 0.00 0.00 0.00 2.39
2873 3148 4.078516 GGCCGGCCTACTCGTTGT 62.079 66.667 38.76 0.00 0.00 3.32
2903 3241 3.687321 ATACAGCCAGCACCCGCAG 62.687 63.158 0.00 0.00 42.27 5.18
2940 3278 0.883153 TTTGCTACAGTGCCAGCATG 59.117 50.000 17.90 0.00 46.56 4.06
2967 3305 4.374607 GCGTGTTGCTTTTCCGTTATTTTC 60.375 41.667 0.00 0.00 41.73 2.29
2971 3309 1.068816 GGCGTGTTGCTTTTCCGTTAT 60.069 47.619 0.00 0.00 45.43 1.89
2972 3310 0.308376 GGCGTGTTGCTTTTCCGTTA 59.692 50.000 0.00 0.00 45.43 3.18
2973 3311 1.065109 GGCGTGTTGCTTTTCCGTT 59.935 52.632 0.00 0.00 45.43 4.44
2974 3312 2.719354 GGCGTGTTGCTTTTCCGT 59.281 55.556 0.00 0.00 45.43 4.69
2975 3313 1.231958 TAGGGCGTGTTGCTTTTCCG 61.232 55.000 0.00 0.00 45.43 4.30
2976 3314 0.521735 CTAGGGCGTGTTGCTTTTCC 59.478 55.000 0.00 0.00 45.43 3.13
2977 3315 1.464997 CTCTAGGGCGTGTTGCTTTTC 59.535 52.381 0.00 0.00 45.43 2.29
2978 3316 1.523758 CTCTAGGGCGTGTTGCTTTT 58.476 50.000 0.00 0.00 45.43 2.27
2979 3317 0.321653 CCTCTAGGGCGTGTTGCTTT 60.322 55.000 0.00 0.00 45.43 3.51
2980 3318 1.296715 CCTCTAGGGCGTGTTGCTT 59.703 57.895 0.00 0.00 45.43 3.91
2981 3319 2.982130 CCTCTAGGGCGTGTTGCT 59.018 61.111 0.00 0.00 45.43 3.91
2992 3330 4.959210 TGAGGAGAGTTTGATTCCCTCTAG 59.041 45.833 0.00 0.00 40.48 2.43
3031 3372 1.202734 TCAGCTCAGATGGCTATTGGC 60.203 52.381 0.00 0.00 38.03 4.52
3056 3397 4.641396 ACTAGTGCTGCAAATTAGTCACA 58.359 39.130 2.77 0.00 0.00 3.58
3077 3422 5.467063 GGCACAATGGCTAGTTCTTAGATAC 59.533 44.000 0.00 0.00 40.14 2.24
3097 3526 4.187694 TCAAAGGTGTTGAATTTTGGCAC 58.812 39.130 0.00 0.00 32.76 5.01
3263 3769 8.431222 TGGAAAATCTGTTCAGGATTTGAAATT 58.569 29.630 0.00 0.00 46.85 1.82
3264 3770 7.965718 TGGAAAATCTGTTCAGGATTTGAAAT 58.034 30.769 0.00 0.00 46.85 2.17
3265 3771 7.358770 TGGAAAATCTGTTCAGGATTTGAAA 57.641 32.000 0.00 0.00 46.85 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.