Multiple sequence alignment - TraesCS5D01G557800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G557800 chr5D 100.000 3392 0 0 1 3392 560010094 560006703 0.000000e+00 6264.0
1 TraesCS5D01G557800 chr5D 91.811 1563 101 11 1111 2647 559960622 559959061 0.000000e+00 2152.0
2 TraesCS5D01G557800 chr5D 91.057 123 11 0 2971 3093 559976086 559975964 2.090000e-37 167.0
3 TraesCS5D01G557800 chr4A 96.444 3206 83 8 1 3183 604670191 604673388 0.000000e+00 5260.0
4 TraesCS5D01G557800 chr4A 83.650 2104 314 20 12 2106 604211015 604208933 0.000000e+00 1953.0
5 TraesCS5D01G557800 chr4A 76.345 985 201 26 1448 2413 701759435 701760406 1.820000e-137 499.0
6 TraesCS5D01G557800 chr4A 84.043 94 15 0 3244 3337 708311612 708311705 1.300000e-14 91.6
7 TraesCS5D01G557800 chrUn 77.548 2031 414 38 11 2021 257887318 257885310 0.000000e+00 1186.0
8 TraesCS5D01G557800 chr3B 74.656 2474 560 57 8 2443 728812121 728809677 0.000000e+00 1033.0
9 TraesCS5D01G557800 chr3B 88.571 70 8 0 3268 3337 433778465 433778534 6.030000e-13 86.1
10 TraesCS5D01G557800 chr3D 74.020 2475 574 58 8 2443 549374804 549372360 0.000000e+00 944.0
11 TraesCS5D01G557800 chr3A 75.404 1175 262 24 474 1636 686728100 686726941 8.280000e-151 544.0
12 TraesCS5D01G557800 chr3A 92.593 54 4 0 8 61 686729847 686729794 1.010000e-10 78.7
13 TraesCS5D01G557800 chr7D 76.351 981 201 24 1452 2413 28037324 28038292 6.540000e-137 497.0
14 TraesCS5D01G557800 chr7A 76.375 982 197 28 1452 2413 28456149 28457115 2.350000e-136 496.0
15 TraesCS5D01G557800 chr7A 85.507 69 10 0 3269 3337 692526499 692526567 4.700000e-09 73.1
16 TraesCS5D01G557800 chr5A 86.170 94 13 0 3244 3337 441196663 441196570 5.990000e-18 102.0
17 TraesCS5D01G557800 chr5A 85.106 94 14 0 3244 3337 342419566 342419473 2.790000e-16 97.1
18 TraesCS5D01G557800 chr1D 84.270 89 13 1 3247 3335 338859229 338859142 6.030000e-13 86.1
19 TraesCS5D01G557800 chr4B 82.022 89 15 1 3250 3337 240916395 240916307 1.310000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G557800 chr5D 560006703 560010094 3391 True 6264.00 6264 100.0000 1 3392 1 chr5D.!!$R3 3391
1 TraesCS5D01G557800 chr5D 559959061 559960622 1561 True 2152.00 2152 91.8110 1111 2647 1 chr5D.!!$R1 1536
2 TraesCS5D01G557800 chr4A 604670191 604673388 3197 False 5260.00 5260 96.4440 1 3183 1 chr4A.!!$F1 3182
3 TraesCS5D01G557800 chr4A 604208933 604211015 2082 True 1953.00 1953 83.6500 12 2106 1 chr4A.!!$R1 2094
4 TraesCS5D01G557800 chr4A 701759435 701760406 971 False 499.00 499 76.3450 1448 2413 1 chr4A.!!$F2 965
5 TraesCS5D01G557800 chrUn 257885310 257887318 2008 True 1186.00 1186 77.5480 11 2021 1 chrUn.!!$R1 2010
6 TraesCS5D01G557800 chr3B 728809677 728812121 2444 True 1033.00 1033 74.6560 8 2443 1 chr3B.!!$R1 2435
7 TraesCS5D01G557800 chr3D 549372360 549374804 2444 True 944.00 944 74.0200 8 2443 1 chr3D.!!$R1 2435
8 TraesCS5D01G557800 chr3A 686726941 686729847 2906 True 311.35 544 83.9985 8 1636 2 chr3A.!!$R1 1628
9 TraesCS5D01G557800 chr7D 28037324 28038292 968 False 497.00 497 76.3510 1452 2413 1 chr7D.!!$F1 961
10 TraesCS5D01G557800 chr7A 28456149 28457115 966 False 496.00 496 76.3750 1452 2413 1 chr7A.!!$F1 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 2009 0.030195 TAGGCACCATCCCATCTCCA 60.03 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 3772 1.202417 CCTATGGCTGTGGTGTACTCG 60.202 57.143 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.351738 GCACAATCCCTGTTGTACTTGC 60.352 50.000 0.00 0.00 40.17 4.01
433 435 9.566432 ACTAATTTTAGAAGGCTCCAATATCTG 57.434 33.333 4.40 0.00 34.84 2.90
697 2009 0.030195 TAGGCACCATCCCATCTCCA 60.030 55.000 0.00 0.00 0.00 3.86
1025 2338 2.032620 AGCCTACCTGAACCTATCACG 58.967 52.381 0.00 0.00 33.47 4.35
1128 2441 6.390504 TCTATTTGGTACCATCCCAGAGTAT 58.609 40.000 17.17 1.57 32.49 2.12
1356 2672 5.123661 GCTCCCTACTATCATCGTAGTAACC 59.876 48.000 0.00 0.00 36.88 2.85
1636 2952 0.320771 AAGCTTCGATGCCGAGTGTT 60.321 50.000 18.70 3.80 46.39 3.32
1853 3170 4.480541 GAGTATCTACACCATGAGCATCG 58.519 47.826 0.00 0.00 38.61 3.84
1945 3262 1.508088 GACTTTGGCATCGCAAGGG 59.492 57.895 2.08 0.00 38.47 3.95
1977 3294 6.046593 TGGTGATGATAACTCCGTGATTTAC 58.953 40.000 0.00 0.00 0.00 2.01
2026 3343 1.926665 TGGCCCCAGGTATGTAAATGT 59.073 47.619 0.00 0.00 0.00 2.71
2432 3772 6.587990 TCGTGAGATTGAAGAAGATCAAAGTC 59.412 38.462 0.00 0.00 42.22 3.01
2443 3783 4.175787 AGATCAAAGTCGAGTACACCAC 57.824 45.455 0.00 0.00 0.00 4.16
2558 3921 2.034558 CCTTGTTTCGGTGCACAGATTT 59.965 45.455 20.46 0.00 0.00 2.17
2708 4075 4.742201 CGCAGGCGGTGTAGTGCT 62.742 66.667 5.63 0.00 33.59 4.40
2731 4098 5.389520 TGACCAAAATATTCCACCTGTTCA 58.610 37.500 0.00 0.00 0.00 3.18
2764 4131 0.109342 CTCTGCTCACCCACCTGTTT 59.891 55.000 0.00 0.00 0.00 2.83
2774 4141 3.103742 ACCCACCTGTTTGTTGATTTGT 58.896 40.909 0.00 0.00 0.00 2.83
2775 4142 3.118811 ACCCACCTGTTTGTTGATTTGTG 60.119 43.478 0.00 0.00 0.00 3.33
2793 4160 3.007070 GCGCCTCGTGTTACAACCG 62.007 63.158 0.00 0.00 0.00 4.44
2896 4263 7.066284 ACGAAGCTAGATTCTGCAAATTAACAT 59.934 33.333 17.99 0.00 0.00 2.71
2897 4264 7.585573 CGAAGCTAGATTCTGCAAATTAACATC 59.414 37.037 17.99 0.00 0.00 3.06
2898 4265 6.952743 AGCTAGATTCTGCAAATTAACATCG 58.047 36.000 0.00 0.00 0.00 3.84
2921 4288 8.593492 TCGTCAATGGATTATGAATTAGTGAG 57.407 34.615 0.00 0.00 0.00 3.51
2927 4294 9.872684 AATGGATTATGAATTAGTGAGTCCAAT 57.127 29.630 0.00 0.00 36.86 3.16
2970 4337 9.251440 ACACAATTAATCTACACCACTACTAGA 57.749 33.333 0.00 0.00 0.00 2.43
3004 4371 8.672815 CCTGTGTTTTGATGGTTTAATTTGTTT 58.327 29.630 0.00 0.00 0.00 2.83
3194 4561 3.350833 CGTAGGTGAACCACTACTAGGT 58.649 50.000 1.62 0.00 42.34 3.08
3195 4562 4.517285 CGTAGGTGAACCACTACTAGGTA 58.483 47.826 1.62 0.00 38.76 3.08
3196 4563 4.574013 CGTAGGTGAACCACTACTAGGTAG 59.426 50.000 1.62 3.50 38.76 3.18
3197 4564 3.363627 AGGTGAACCACTACTAGGTAGC 58.636 50.000 1.62 0.00 39.51 3.58
3198 4565 3.011482 AGGTGAACCACTACTAGGTAGCT 59.989 47.826 0.00 0.00 39.51 3.32
3199 4566 4.229123 AGGTGAACCACTACTAGGTAGCTA 59.771 45.833 1.62 0.99 39.51 3.32
3200 4567 5.103601 AGGTGAACCACTACTAGGTAGCTAT 60.104 44.000 1.35 0.00 39.51 2.97
3201 4568 6.102321 AGGTGAACCACTACTAGGTAGCTATA 59.898 42.308 1.35 0.00 39.51 1.31
3202 4569 6.206438 GGTGAACCACTACTAGGTAGCTATAC 59.794 46.154 1.35 0.00 39.51 1.47
3203 4570 6.997476 GTGAACCACTACTAGGTAGCTATACT 59.003 42.308 1.35 1.16 39.51 2.12
3204 4571 7.501892 GTGAACCACTACTAGGTAGCTATACTT 59.498 40.741 1.35 0.00 39.51 2.24
3205 4572 7.501559 TGAACCACTACTAGGTAGCTATACTTG 59.498 40.741 1.35 2.68 39.51 3.16
3206 4573 5.769162 ACCACTACTAGGTAGCTATACTTGC 59.231 44.000 1.35 0.00 39.51 4.01
3207 4574 6.005198 CCACTACTAGGTAGCTATACTTGCT 58.995 44.000 1.35 0.00 39.51 3.91
3208 4575 6.490721 CCACTACTAGGTAGCTATACTTGCTT 59.509 42.308 1.35 0.00 39.51 3.91
3209 4576 7.308710 CCACTACTAGGTAGCTATACTTGCTTC 60.309 44.444 1.35 0.00 39.51 3.86
3210 4577 5.692613 ACTAGGTAGCTATACTTGCTTCG 57.307 43.478 1.35 0.00 41.46 3.79
3211 4578 5.374921 ACTAGGTAGCTATACTTGCTTCGA 58.625 41.667 1.35 0.00 41.46 3.71
3212 4579 6.005198 ACTAGGTAGCTATACTTGCTTCGAT 58.995 40.000 1.35 0.00 41.46 3.59
3213 4580 5.379732 AGGTAGCTATACTTGCTTCGATC 57.620 43.478 0.00 0.00 41.46 3.69
3214 4581 4.083217 AGGTAGCTATACTTGCTTCGATCG 60.083 45.833 9.36 9.36 41.46 3.69
3215 4582 4.083431 GGTAGCTATACTTGCTTCGATCGA 60.083 45.833 15.15 15.15 41.46 3.59
3216 4583 4.775058 AGCTATACTTGCTTCGATCGAT 57.225 40.909 20.18 5.17 37.52 3.59
3217 4584 4.728534 AGCTATACTTGCTTCGATCGATC 58.271 43.478 20.18 15.68 37.52 3.69
3218 4585 4.216472 AGCTATACTTGCTTCGATCGATCA 59.784 41.667 24.40 16.63 37.52 2.92
3219 4586 4.917998 GCTATACTTGCTTCGATCGATCAA 59.082 41.667 24.40 22.09 0.00 2.57
3220 4587 5.164138 GCTATACTTGCTTCGATCGATCAAC 60.164 44.000 24.40 9.24 0.00 3.18
3221 4588 3.238108 ACTTGCTTCGATCGATCAACT 57.762 42.857 24.40 11.64 0.00 3.16
3222 4589 3.589988 ACTTGCTTCGATCGATCAACTT 58.410 40.909 24.40 10.45 0.00 2.66
3223 4590 3.997021 ACTTGCTTCGATCGATCAACTTT 59.003 39.130 24.40 8.29 0.00 2.66
3224 4591 4.452455 ACTTGCTTCGATCGATCAACTTTT 59.548 37.500 24.40 6.17 0.00 2.27
3225 4592 5.637810 ACTTGCTTCGATCGATCAACTTTTA 59.362 36.000 24.40 0.00 0.00 1.52
3226 4593 5.702622 TGCTTCGATCGATCAACTTTTAG 57.297 39.130 24.40 10.80 0.00 1.85
3227 4594 4.566759 TGCTTCGATCGATCAACTTTTAGG 59.433 41.667 24.40 5.61 0.00 2.69
3228 4595 4.025647 GCTTCGATCGATCAACTTTTAGGG 60.026 45.833 24.40 4.90 0.00 3.53
3229 4596 3.454375 TCGATCGATCAACTTTTAGGGC 58.546 45.455 24.40 0.00 0.00 5.19
3230 4597 2.218759 CGATCGATCAACTTTTAGGGCG 59.781 50.000 24.40 3.19 0.00 6.13
3231 4598 1.365699 TCGATCAACTTTTAGGGCGC 58.634 50.000 0.00 0.00 0.00 6.53
3232 4599 0.377203 CGATCAACTTTTAGGGCGCC 59.623 55.000 21.18 21.18 0.00 6.53
3233 4600 0.377203 GATCAACTTTTAGGGCGCCG 59.623 55.000 22.54 7.92 0.00 6.46
3234 4601 0.322187 ATCAACTTTTAGGGCGCCGT 60.322 50.000 26.70 26.70 0.00 5.68
3235 4602 0.952010 TCAACTTTTAGGGCGCCGTC 60.952 55.000 27.35 10.23 0.00 4.79
3236 4603 2.030958 AACTTTTAGGGCGCCGTCG 61.031 57.895 27.35 14.67 39.07 5.12
3237 4604 3.192922 CTTTTAGGGCGCCGTCGG 61.193 66.667 27.35 6.99 35.95 4.79
3249 4616 3.103911 CGTCGGCGGAACACAGTC 61.104 66.667 7.21 0.00 0.00 3.51
3250 4617 3.103911 GTCGGCGGAACACAGTCG 61.104 66.667 7.21 0.00 36.74 4.18
3251 4618 3.289062 TCGGCGGAACACAGTCGA 61.289 61.111 7.21 0.00 42.47 4.20
3252 4619 3.103911 CGGCGGAACACAGTCGAC 61.104 66.667 7.70 7.70 37.72 4.20
3253 4620 2.338984 GGCGGAACACAGTCGACT 59.661 61.111 13.58 13.58 0.00 4.18
3254 4621 1.733399 GGCGGAACACAGTCGACTC 60.733 63.158 16.96 3.92 0.00 3.36
3255 4622 1.286260 GCGGAACACAGTCGACTCT 59.714 57.895 16.96 0.00 0.00 3.24
3256 4623 1.004277 GCGGAACACAGTCGACTCTG 61.004 60.000 16.96 17.54 40.80 3.35
3258 4625 1.663445 CGGAACACAGTCGACTCTGTC 60.663 57.143 24.04 17.09 45.37 3.51
3259 4626 1.609555 GGAACACAGTCGACTCTGTCT 59.390 52.381 24.04 15.13 45.37 3.41
3260 4627 2.812591 GGAACACAGTCGACTCTGTCTA 59.187 50.000 24.04 0.00 45.37 2.59
3261 4628 3.120130 GGAACACAGTCGACTCTGTCTAG 60.120 52.174 24.04 10.64 45.37 2.43
3262 4629 1.807742 ACACAGTCGACTCTGTCTAGC 59.192 52.381 19.29 0.00 45.37 3.42
3263 4630 1.080298 ACAGTCGACTCTGTCTAGCG 58.920 55.000 16.96 3.49 44.07 4.26
3264 4631 1.337917 ACAGTCGACTCTGTCTAGCGA 60.338 52.381 16.96 0.00 44.07 4.93
3265 4632 1.326245 CAGTCGACTCTGTCTAGCGAG 59.674 57.143 16.96 0.00 0.00 5.03
3266 4633 0.027063 GTCGACTCTGTCTAGCGAGC 59.973 60.000 8.70 0.00 0.00 5.03
3267 4634 1.011684 CGACTCTGTCTAGCGAGCG 60.012 63.158 0.00 0.00 0.00 5.03
3268 4635 1.298041 GACTCTGTCTAGCGAGCGC 60.298 63.158 6.78 6.78 42.33 5.92
3278 4645 2.914213 GCGAGCGCTCACGTATTC 59.086 61.111 34.69 8.60 42.83 1.75
3279 4646 1.872234 GCGAGCGCTCACGTATTCA 60.872 57.895 34.69 0.00 42.83 2.57
3280 4647 1.802300 GCGAGCGCTCACGTATTCAG 61.802 60.000 34.69 17.20 42.83 3.02
3281 4648 0.248094 CGAGCGCTCACGTATTCAGA 60.248 55.000 34.69 0.00 42.83 3.27
3282 4649 1.471964 GAGCGCTCACGTATTCAGAG 58.528 55.000 31.91 0.00 42.83 3.35
3283 4650 0.101399 AGCGCTCACGTATTCAGAGG 59.899 55.000 2.64 0.00 42.83 3.69
3284 4651 0.179134 GCGCTCACGTATTCAGAGGT 60.179 55.000 0.00 0.00 42.83 3.85
3285 4652 1.736032 GCGCTCACGTATTCAGAGGTT 60.736 52.381 0.00 0.00 42.83 3.50
3286 4653 2.607187 CGCTCACGTATTCAGAGGTTT 58.393 47.619 2.47 0.00 33.53 3.27
3287 4654 2.599082 CGCTCACGTATTCAGAGGTTTC 59.401 50.000 2.47 0.00 33.53 2.78
3288 4655 3.585862 GCTCACGTATTCAGAGGTTTCA 58.414 45.455 2.47 0.00 0.00 2.69
3289 4656 3.614616 GCTCACGTATTCAGAGGTTTCAG 59.385 47.826 2.47 0.00 0.00 3.02
3290 4657 4.810790 CTCACGTATTCAGAGGTTTCAGT 58.189 43.478 0.00 0.00 0.00 3.41
3291 4658 4.556233 TCACGTATTCAGAGGTTTCAGTG 58.444 43.478 0.00 0.00 0.00 3.66
3292 4659 4.279922 TCACGTATTCAGAGGTTTCAGTGA 59.720 41.667 0.00 0.00 33.28 3.41
3293 4660 4.988540 CACGTATTCAGAGGTTTCAGTGAA 59.011 41.667 0.08 0.08 33.61 3.18
3294 4661 5.639506 CACGTATTCAGAGGTTTCAGTGAAT 59.360 40.000 6.36 0.00 41.42 2.57
3295 4662 6.811665 CACGTATTCAGAGGTTTCAGTGAATA 59.188 38.462 6.36 0.00 39.68 1.75
3296 4663 7.330946 CACGTATTCAGAGGTTTCAGTGAATAA 59.669 37.037 6.36 0.00 41.33 1.40
3297 4664 8.041323 ACGTATTCAGAGGTTTCAGTGAATAAT 58.959 33.333 6.36 0.00 41.33 1.28
3298 4665 9.529325 CGTATTCAGAGGTTTCAGTGAATAATA 57.471 33.333 6.36 1.20 41.33 0.98
3301 4668 9.739276 ATTCAGAGGTTTCAGTGAATAATAACA 57.261 29.630 6.36 0.00 37.76 2.41
3302 4669 9.567776 TTCAGAGGTTTCAGTGAATAATAACAA 57.432 29.630 6.36 0.00 0.00 2.83
3303 4670 9.219603 TCAGAGGTTTCAGTGAATAATAACAAG 57.780 33.333 6.36 0.00 0.00 3.16
3304 4671 9.219603 CAGAGGTTTCAGTGAATAATAACAAGA 57.780 33.333 6.36 0.00 0.00 3.02
3305 4672 9.793259 AGAGGTTTCAGTGAATAATAACAAGAA 57.207 29.630 6.36 0.00 0.00 2.52
3328 4695 8.849168 AGAAAATTTGGATGTCAAAAATTTCCC 58.151 29.630 15.07 11.23 46.93 3.97
3329 4696 8.765488 AAAATTTGGATGTCAAAAATTTCCCT 57.235 26.923 13.22 2.08 46.93 4.20
3330 4697 7.748691 AATTTGGATGTCAAAAATTTCCCTG 57.251 32.000 0.00 0.00 46.93 4.45
3331 4698 6.491714 TTTGGATGTCAAAAATTTCCCTGA 57.508 33.333 0.00 0.00 41.87 3.86
3332 4699 6.491714 TTGGATGTCAAAAATTTCCCTGAA 57.508 33.333 0.00 0.00 31.46 3.02
3333 4700 6.491714 TGGATGTCAAAAATTTCCCTGAAA 57.508 33.333 0.00 0.00 35.94 2.69
3334 4701 6.523840 TGGATGTCAAAAATTTCCCTGAAAG 58.476 36.000 0.00 0.00 34.92 2.62
3335 4702 6.099557 TGGATGTCAAAAATTTCCCTGAAAGT 59.900 34.615 0.00 0.00 34.92 2.66
3336 4703 6.992123 GGATGTCAAAAATTTCCCTGAAAGTT 59.008 34.615 0.00 0.00 40.68 2.66
3337 4704 7.041848 GGATGTCAAAAATTTCCCTGAAAGTTG 60.042 37.037 3.40 4.34 38.56 3.16
3338 4705 6.112058 TGTCAAAAATTTCCCTGAAAGTTGG 58.888 36.000 3.40 0.83 38.56 3.77
3339 4706 5.527214 GTCAAAAATTTCCCTGAAAGTTGGG 59.473 40.000 3.40 0.00 38.56 4.12
3340 4707 3.769739 AAATTTCCCTGAAAGTTGGGC 57.230 42.857 1.93 0.00 38.19 5.36
3341 4708 2.702270 ATTTCCCTGAAAGTTGGGCT 57.298 45.000 0.00 0.00 43.04 5.19
3342 4709 3.825908 ATTTCCCTGAAAGTTGGGCTA 57.174 42.857 0.00 0.00 43.04 3.93
3343 4710 3.603965 TTTCCCTGAAAGTTGGGCTAA 57.396 42.857 0.00 0.00 43.04 3.09
3344 4711 3.825908 TTCCCTGAAAGTTGGGCTAAT 57.174 42.857 0.00 0.00 43.04 1.73
3345 4712 3.366052 TCCCTGAAAGTTGGGCTAATC 57.634 47.619 0.00 0.00 43.04 1.75
3346 4713 2.647299 TCCCTGAAAGTTGGGCTAATCA 59.353 45.455 0.00 0.00 43.04 2.57
3347 4714 3.075283 TCCCTGAAAGTTGGGCTAATCAA 59.925 43.478 0.00 0.00 43.04 2.57
3348 4715 3.831911 CCCTGAAAGTTGGGCTAATCAAA 59.168 43.478 0.00 0.00 36.61 2.69
3349 4716 4.082026 CCCTGAAAGTTGGGCTAATCAAAG 60.082 45.833 0.00 0.00 36.61 2.77
3350 4717 4.766891 CCTGAAAGTTGGGCTAATCAAAGA 59.233 41.667 0.00 0.00 0.00 2.52
3351 4718 5.335976 CCTGAAAGTTGGGCTAATCAAAGAC 60.336 44.000 0.00 0.00 0.00 3.01
3352 4719 5.136828 TGAAAGTTGGGCTAATCAAAGACA 58.863 37.500 0.00 0.00 0.00 3.41
3353 4720 5.596361 TGAAAGTTGGGCTAATCAAAGACAA 59.404 36.000 0.00 0.00 0.00 3.18
3354 4721 6.267471 TGAAAGTTGGGCTAATCAAAGACAAT 59.733 34.615 0.00 0.00 0.00 2.71
3355 4722 5.904362 AGTTGGGCTAATCAAAGACAATC 57.096 39.130 0.00 0.00 0.00 2.67
3356 4723 5.574188 AGTTGGGCTAATCAAAGACAATCT 58.426 37.500 0.00 0.00 0.00 2.40
3357 4724 5.649831 AGTTGGGCTAATCAAAGACAATCTC 59.350 40.000 0.00 0.00 0.00 2.75
3358 4725 4.191544 TGGGCTAATCAAAGACAATCTCG 58.808 43.478 0.00 0.00 0.00 4.04
3359 4726 3.002759 GGGCTAATCAAAGACAATCTCGC 59.997 47.826 0.00 0.00 0.00 5.03
3360 4727 3.002759 GGCTAATCAAAGACAATCTCGCC 59.997 47.826 0.00 0.00 0.00 5.54
3361 4728 3.873952 GCTAATCAAAGACAATCTCGCCT 59.126 43.478 0.00 0.00 0.00 5.52
3362 4729 4.260538 GCTAATCAAAGACAATCTCGCCTG 60.261 45.833 0.00 0.00 0.00 4.85
3363 4730 2.839486 TCAAAGACAATCTCGCCTGT 57.161 45.000 0.00 0.00 0.00 4.00
3364 4731 2.688507 TCAAAGACAATCTCGCCTGTC 58.311 47.619 0.00 0.00 41.90 3.51
3365 4732 2.037121 TCAAAGACAATCTCGCCTGTCA 59.963 45.455 5.13 0.00 43.64 3.58
3366 4733 3.005554 CAAAGACAATCTCGCCTGTCAT 58.994 45.455 5.13 0.00 43.64 3.06
3367 4734 4.081697 TCAAAGACAATCTCGCCTGTCATA 60.082 41.667 5.13 0.00 43.64 2.15
3368 4735 4.471904 AAGACAATCTCGCCTGTCATAA 57.528 40.909 5.13 0.00 43.64 1.90
3369 4736 4.679373 AGACAATCTCGCCTGTCATAAT 57.321 40.909 5.13 0.00 43.64 1.28
3370 4737 5.028549 AGACAATCTCGCCTGTCATAATT 57.971 39.130 5.13 0.00 43.64 1.40
3371 4738 4.813161 AGACAATCTCGCCTGTCATAATTG 59.187 41.667 5.13 0.00 43.64 2.32
3372 4739 3.879295 ACAATCTCGCCTGTCATAATTGG 59.121 43.478 0.00 0.00 0.00 3.16
3373 4740 1.953559 TCTCGCCTGTCATAATTGGC 58.046 50.000 0.00 0.00 41.76 4.52
3374 4741 1.209261 TCTCGCCTGTCATAATTGGCA 59.791 47.619 0.00 0.00 45.13 4.92
3375 4742 2.016318 CTCGCCTGTCATAATTGGCAA 58.984 47.619 0.68 0.68 45.13 4.52
3376 4743 2.016318 TCGCCTGTCATAATTGGCAAG 58.984 47.619 5.96 0.00 45.13 4.01
3377 4744 1.066002 CGCCTGTCATAATTGGCAAGG 59.934 52.381 5.96 0.00 45.13 3.61
3378 4745 2.378038 GCCTGTCATAATTGGCAAGGA 58.622 47.619 5.96 0.00 44.34 3.36
3379 4746 2.760092 GCCTGTCATAATTGGCAAGGAA 59.240 45.455 5.96 0.00 44.34 3.36
3380 4747 3.385755 GCCTGTCATAATTGGCAAGGAAT 59.614 43.478 5.96 0.00 44.34 3.01
3381 4748 4.584325 GCCTGTCATAATTGGCAAGGAATA 59.416 41.667 5.96 0.00 44.34 1.75
3382 4749 5.068987 GCCTGTCATAATTGGCAAGGAATAA 59.931 40.000 5.96 0.00 44.34 1.40
3383 4750 6.736794 GCCTGTCATAATTGGCAAGGAATAAG 60.737 42.308 5.96 0.00 44.34 1.73
3384 4751 6.547141 CCTGTCATAATTGGCAAGGAATAAGA 59.453 38.462 5.96 0.00 36.93 2.10
3385 4752 7.068593 CCTGTCATAATTGGCAAGGAATAAGAA 59.931 37.037 5.96 0.00 36.93 2.52
3386 4753 7.999679 TGTCATAATTGGCAAGGAATAAGAAG 58.000 34.615 5.96 0.00 33.65 2.85
3387 4754 7.615365 TGTCATAATTGGCAAGGAATAAGAAGT 59.385 33.333 5.96 0.00 33.65 3.01
3388 4755 7.917505 GTCATAATTGGCAAGGAATAAGAAGTG 59.082 37.037 5.96 0.00 0.00 3.16
3389 4756 4.725790 ATTGGCAAGGAATAAGAAGTGC 57.274 40.909 5.96 0.00 0.00 4.40
3390 4757 3.153369 TGGCAAGGAATAAGAAGTGCA 57.847 42.857 0.00 0.00 33.66 4.57
3391 4758 3.084039 TGGCAAGGAATAAGAAGTGCAG 58.916 45.455 0.00 0.00 33.66 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 2.673368 GACATTAGCGAAGTGAGGTTGG 59.327 50.000 0.00 0.00 0.00 3.77
433 435 6.204359 AGTGAAATTATTTGATGCGATGCTC 58.796 36.000 0.00 0.00 0.00 4.26
1025 2338 8.862550 AGGAATCGAATTATCAAAAGAATTGC 57.137 30.769 0.00 0.00 0.00 3.56
1356 2672 7.547019 ACATATATGCATGAAGATACAACTCCG 59.453 37.037 10.16 0.00 0.00 4.63
1661 2977 6.352516 GTGTTGAGGATCCTTATCAGATTGT 58.647 40.000 17.42 0.00 33.41 2.71
1788 3104 4.871822 TCATGATGTCCAACCTCTCTAGA 58.128 43.478 0.00 0.00 0.00 2.43
1853 3170 2.035961 TCACAGTGCAAGACTACCTCAC 59.964 50.000 0.00 0.00 31.73 3.51
1860 3177 2.988010 TCAAGTCACAGTGCAAGACT 57.012 45.000 7.45 7.45 43.98 3.24
1945 3262 5.291128 CGGAGTTATCATCACCAAGTAACAC 59.709 44.000 0.00 0.00 0.00 3.32
1977 3294 3.200593 GTGCCAGGCATGCTCGAG 61.201 66.667 19.75 8.45 41.91 4.04
2432 3772 1.202417 CCTATGGCTGTGGTGTACTCG 60.202 57.143 0.00 0.00 0.00 4.18
2443 3783 1.892862 GCTGCTGCTCCTATGGCTG 60.893 63.158 8.53 0.00 36.03 4.85
2691 4058 4.742201 AGCACTACACCGCCTGCG 62.742 66.667 4.20 4.20 34.69 5.18
2708 4075 5.389520 TGAACAGGTGGAATATTTTGGTCA 58.610 37.500 0.00 0.00 30.49 4.02
2731 4098 1.836166 AGCAGAGCAGGATACACACAT 59.164 47.619 0.00 0.00 41.41 3.21
2764 4131 1.163420 ACGAGGCGCACAAATCAACA 61.163 50.000 10.83 0.00 0.00 3.33
2774 4141 1.957186 GGTTGTAACACGAGGCGCA 60.957 57.895 10.83 0.00 0.00 6.09
2775 4142 2.858158 GGTTGTAACACGAGGCGC 59.142 61.111 0.00 0.00 0.00 6.53
2896 4263 8.204160 ACTCACTAATTCATAATCCATTGACGA 58.796 33.333 0.00 0.00 0.00 4.20
2897 4264 8.370493 ACTCACTAATTCATAATCCATTGACG 57.630 34.615 0.00 0.00 0.00 4.35
2898 4265 8.778358 GGACTCACTAATTCATAATCCATTGAC 58.222 37.037 0.00 0.00 0.00 3.18
2934 4301 9.953697 GTGTAGATTAATTGTGTTTTGTACCAA 57.046 29.630 0.00 0.00 0.00 3.67
2970 4337 4.466015 ACCATCAAAACACAGGTCTTGTTT 59.534 37.500 0.00 0.00 46.73 2.83
3004 4371 8.590204 GGGGTTATCCTCTTTTAAAATCAACAA 58.410 33.333 0.09 0.00 35.33 2.83
3180 4547 7.521910 GCAAGTATAGCTACCTAGTAGTGGTTC 60.522 44.444 0.00 0.00 38.30 3.62
3181 4548 6.264970 GCAAGTATAGCTACCTAGTAGTGGTT 59.735 42.308 0.00 0.00 38.30 3.67
3183 4550 6.005198 AGCAAGTATAGCTACCTAGTAGTGG 58.995 44.000 0.00 0.00 41.32 4.00
3184 4551 7.513371 AAGCAAGTATAGCTACCTAGTAGTG 57.487 40.000 0.00 0.00 42.53 2.74
3185 4552 6.427547 CGAAGCAAGTATAGCTACCTAGTAGT 59.572 42.308 0.00 0.00 42.53 2.73
3186 4553 6.649973 TCGAAGCAAGTATAGCTACCTAGTAG 59.350 42.308 0.00 0.00 42.53 2.57
3187 4554 6.528321 TCGAAGCAAGTATAGCTACCTAGTA 58.472 40.000 0.00 0.00 42.53 1.82
3188 4555 5.374921 TCGAAGCAAGTATAGCTACCTAGT 58.625 41.667 0.00 0.00 42.53 2.57
3189 4556 5.943706 TCGAAGCAAGTATAGCTACCTAG 57.056 43.478 0.00 0.00 42.53 3.02
3190 4557 5.121925 CGATCGAAGCAAGTATAGCTACCTA 59.878 44.000 10.26 0.00 42.53 3.08
3191 4558 4.083217 CGATCGAAGCAAGTATAGCTACCT 60.083 45.833 10.26 0.00 42.53 3.08
3192 4559 4.083431 TCGATCGAAGCAAGTATAGCTACC 60.083 45.833 16.99 0.00 42.53 3.18
3193 4560 5.032100 TCGATCGAAGCAAGTATAGCTAC 57.968 43.478 16.99 0.00 42.53 3.58
3194 4561 5.411669 TGATCGATCGAAGCAAGTATAGCTA 59.588 40.000 23.50 0.00 42.53 3.32
3195 4562 4.216472 TGATCGATCGAAGCAAGTATAGCT 59.784 41.667 23.50 0.00 45.97 3.32
3196 4563 4.476862 TGATCGATCGAAGCAAGTATAGC 58.523 43.478 23.50 0.00 0.00 2.97
3197 4564 6.146216 AGTTGATCGATCGAAGCAAGTATAG 58.854 40.000 28.33 0.00 30.14 1.31
3198 4565 6.073327 AGTTGATCGATCGAAGCAAGTATA 57.927 37.500 28.33 12.75 30.14 1.47
3199 4566 4.938080 AGTTGATCGATCGAAGCAAGTAT 58.062 39.130 28.33 18.61 30.14 2.12
3200 4567 4.371855 AGTTGATCGATCGAAGCAAGTA 57.628 40.909 28.33 13.29 30.14 2.24
3201 4568 3.238108 AGTTGATCGATCGAAGCAAGT 57.762 42.857 26.85 26.39 0.00 3.16
3202 4569 4.590400 AAAGTTGATCGATCGAAGCAAG 57.410 40.909 26.85 0.00 0.00 4.01
3203 4570 5.063438 CCTAAAAGTTGATCGATCGAAGCAA 59.937 40.000 23.50 23.91 0.00 3.91
3204 4571 4.566759 CCTAAAAGTTGATCGATCGAAGCA 59.433 41.667 23.50 19.64 0.00 3.91
3205 4572 4.025647 CCCTAAAAGTTGATCGATCGAAGC 60.026 45.833 23.50 17.23 0.00 3.86
3206 4573 4.025647 GCCCTAAAAGTTGATCGATCGAAG 60.026 45.833 23.50 11.10 0.00 3.79
3207 4574 3.869246 GCCCTAAAAGTTGATCGATCGAA 59.131 43.478 23.50 10.92 0.00 3.71
3208 4575 3.454375 GCCCTAAAAGTTGATCGATCGA 58.546 45.455 21.86 21.86 0.00 3.59
3209 4576 2.218759 CGCCCTAAAAGTTGATCGATCG 59.781 50.000 20.03 9.36 0.00 3.69
3210 4577 2.032808 GCGCCCTAAAAGTTGATCGATC 60.033 50.000 18.72 18.72 0.00 3.69
3211 4578 1.940613 GCGCCCTAAAAGTTGATCGAT 59.059 47.619 0.00 0.00 0.00 3.59
3212 4579 1.365699 GCGCCCTAAAAGTTGATCGA 58.634 50.000 0.00 0.00 0.00 3.59
3213 4580 0.377203 GGCGCCCTAAAAGTTGATCG 59.623 55.000 18.11 0.00 0.00 3.69
3214 4581 0.377203 CGGCGCCCTAAAAGTTGATC 59.623 55.000 23.46 0.00 0.00 2.92
3215 4582 0.322187 ACGGCGCCCTAAAAGTTGAT 60.322 50.000 23.46 0.00 0.00 2.57
3216 4583 0.952010 GACGGCGCCCTAAAAGTTGA 60.952 55.000 23.46 0.00 0.00 3.18
3217 4584 1.500396 GACGGCGCCCTAAAAGTTG 59.500 57.895 23.46 5.65 0.00 3.16
3218 4585 2.030958 CGACGGCGCCCTAAAAGTT 61.031 57.895 23.46 0.00 0.00 2.66
3219 4586 2.433664 CGACGGCGCCCTAAAAGT 60.434 61.111 23.46 12.09 0.00 2.66
3220 4587 3.192922 CCGACGGCGCCCTAAAAG 61.193 66.667 23.46 8.22 35.83 2.27
3232 4599 3.103911 GACTGTGTTCCGCCGACG 61.104 66.667 0.00 0.00 39.67 5.12
3233 4600 3.103911 CGACTGTGTTCCGCCGAC 61.104 66.667 0.00 0.00 0.00 4.79
3234 4601 3.289062 TCGACTGTGTTCCGCCGA 61.289 61.111 0.00 0.00 0.00 5.54
3235 4602 3.103911 GTCGACTGTGTTCCGCCG 61.104 66.667 8.70 0.00 0.00 6.46
3236 4603 1.733399 GAGTCGACTGTGTTCCGCC 60.733 63.158 25.58 0.40 0.00 6.13
3237 4604 1.004277 CAGAGTCGACTGTGTTCCGC 61.004 60.000 29.27 11.01 33.12 5.54
3238 4605 0.311165 ACAGAGTCGACTGTGTTCCG 59.689 55.000 35.15 17.08 46.64 4.30
3245 4612 1.326245 CTCGCTAGACAGAGTCGACTG 59.674 57.143 25.58 13.34 42.78 3.51
3246 4613 1.647346 CTCGCTAGACAGAGTCGACT 58.353 55.000 20.18 20.18 37.67 4.18
3247 4614 0.027063 GCTCGCTAGACAGAGTCGAC 59.973 60.000 7.70 7.70 37.67 4.20
3248 4615 1.422179 CGCTCGCTAGACAGAGTCGA 61.422 60.000 14.92 4.57 37.67 4.20
3249 4616 1.011684 CGCTCGCTAGACAGAGTCG 60.012 63.158 0.00 3.81 37.67 4.18
3250 4617 1.298041 GCGCTCGCTAGACAGAGTC 60.298 63.158 0.00 0.00 36.88 3.36
3251 4618 2.795297 GCGCTCGCTAGACAGAGT 59.205 61.111 0.00 0.00 36.88 3.24
3261 4628 1.802300 CTGAATACGTGAGCGCTCGC 61.802 60.000 35.30 35.30 42.83 5.03
3262 4629 0.248094 TCTGAATACGTGAGCGCTCG 60.248 55.000 30.75 23.36 42.83 5.03
3263 4630 1.471964 CTCTGAATACGTGAGCGCTC 58.528 55.000 30.42 30.42 42.83 5.03
3264 4631 0.101399 CCTCTGAATACGTGAGCGCT 59.899 55.000 11.27 11.27 42.83 5.92
3265 4632 0.179134 ACCTCTGAATACGTGAGCGC 60.179 55.000 0.00 0.00 42.83 5.92
3266 4633 2.279582 AACCTCTGAATACGTGAGCG 57.720 50.000 0.00 0.00 44.93 5.03
3267 4634 3.585862 TGAAACCTCTGAATACGTGAGC 58.414 45.455 0.00 0.00 0.00 4.26
3268 4635 4.623167 CACTGAAACCTCTGAATACGTGAG 59.377 45.833 0.00 0.00 0.00 3.51
3269 4636 4.279922 TCACTGAAACCTCTGAATACGTGA 59.720 41.667 0.00 0.00 0.00 4.35
3270 4637 4.556233 TCACTGAAACCTCTGAATACGTG 58.444 43.478 0.00 0.00 0.00 4.49
3271 4638 4.866508 TCACTGAAACCTCTGAATACGT 57.133 40.909 0.00 0.00 0.00 3.57
3272 4639 7.827819 TTATTCACTGAAACCTCTGAATACG 57.172 36.000 0.00 0.00 36.03 3.06
3275 4642 9.739276 TGTTATTATTCACTGAAACCTCTGAAT 57.261 29.630 0.00 0.00 37.21 2.57
3276 4643 9.567776 TTGTTATTATTCACTGAAACCTCTGAA 57.432 29.630 0.00 0.00 0.00 3.02
3277 4644 9.219603 CTTGTTATTATTCACTGAAACCTCTGA 57.780 33.333 0.00 0.00 0.00 3.27
3278 4645 9.219603 TCTTGTTATTATTCACTGAAACCTCTG 57.780 33.333 0.00 0.00 0.00 3.35
3279 4646 9.793259 TTCTTGTTATTATTCACTGAAACCTCT 57.207 29.630 0.00 0.00 0.00 3.69
3302 4669 8.849168 GGGAAATTTTTGACATCCAAATTTTCT 58.151 29.630 16.85 0.75 43.59 2.52
3303 4670 8.849168 AGGGAAATTTTTGACATCCAAATTTTC 58.151 29.630 12.72 12.72 43.59 2.29
3304 4671 8.631797 CAGGGAAATTTTTGACATCCAAATTTT 58.368 29.630 11.58 5.90 43.59 1.82
3305 4672 7.997803 TCAGGGAAATTTTTGACATCCAAATTT 59.002 29.630 10.68 10.68 43.59 1.82
3306 4673 7.516452 TCAGGGAAATTTTTGACATCCAAATT 58.484 30.769 0.00 0.00 43.59 1.82
3307 4674 7.077050 TCAGGGAAATTTTTGACATCCAAAT 57.923 32.000 0.00 0.00 43.59 2.32
3308 4675 6.491714 TCAGGGAAATTTTTGACATCCAAA 57.508 33.333 0.00 0.00 42.56 3.28
3309 4676 6.491714 TTCAGGGAAATTTTTGACATCCAA 57.508 33.333 0.00 0.00 31.63 3.53
3310 4677 6.099557 ACTTTCAGGGAAATTTTTGACATCCA 59.900 34.615 0.00 0.00 30.85 3.41
3311 4678 6.524734 ACTTTCAGGGAAATTTTTGACATCC 58.475 36.000 0.00 0.00 30.85 3.51
3312 4679 7.041848 CCAACTTTCAGGGAAATTTTTGACATC 60.042 37.037 0.00 0.00 30.85 3.06
3313 4680 6.767423 CCAACTTTCAGGGAAATTTTTGACAT 59.233 34.615 0.00 0.00 30.85 3.06
3314 4681 6.112058 CCAACTTTCAGGGAAATTTTTGACA 58.888 36.000 0.00 0.00 30.85 3.58
3315 4682 6.603237 CCAACTTTCAGGGAAATTTTTGAC 57.397 37.500 0.00 0.00 30.85 3.18
3327 4694 4.766891 TCTTTGATTAGCCCAACTTTCAGG 59.233 41.667 0.00 0.00 0.00 3.86
3328 4695 5.241506 TGTCTTTGATTAGCCCAACTTTCAG 59.758 40.000 0.00 0.00 0.00 3.02
3329 4696 5.136828 TGTCTTTGATTAGCCCAACTTTCA 58.863 37.500 0.00 0.00 0.00 2.69
3330 4697 5.705609 TGTCTTTGATTAGCCCAACTTTC 57.294 39.130 0.00 0.00 0.00 2.62
3331 4698 6.494835 AGATTGTCTTTGATTAGCCCAACTTT 59.505 34.615 0.00 0.00 0.00 2.66
3332 4699 6.012745 AGATTGTCTTTGATTAGCCCAACTT 58.987 36.000 0.00 0.00 0.00 2.66
3333 4700 5.574188 AGATTGTCTTTGATTAGCCCAACT 58.426 37.500 0.00 0.00 0.00 3.16
3334 4701 5.447818 CGAGATTGTCTTTGATTAGCCCAAC 60.448 44.000 0.00 0.00 0.00 3.77
3335 4702 4.635765 CGAGATTGTCTTTGATTAGCCCAA 59.364 41.667 0.00 0.00 0.00 4.12
3336 4703 4.191544 CGAGATTGTCTTTGATTAGCCCA 58.808 43.478 0.00 0.00 0.00 5.36
3337 4704 3.002759 GCGAGATTGTCTTTGATTAGCCC 59.997 47.826 0.00 0.00 0.00 5.19
3338 4705 3.002759 GGCGAGATTGTCTTTGATTAGCC 59.997 47.826 0.00 0.00 0.00 3.93
3339 4706 3.873952 AGGCGAGATTGTCTTTGATTAGC 59.126 43.478 0.00 0.00 0.00 3.09
3340 4707 4.872691 ACAGGCGAGATTGTCTTTGATTAG 59.127 41.667 0.00 0.00 0.00 1.73
3341 4708 4.832248 ACAGGCGAGATTGTCTTTGATTA 58.168 39.130 0.00 0.00 0.00 1.75
3342 4709 3.679389 ACAGGCGAGATTGTCTTTGATT 58.321 40.909 0.00 0.00 0.00 2.57
3343 4710 3.265791 GACAGGCGAGATTGTCTTTGAT 58.734 45.455 0.00 0.00 40.35 2.57
3344 4711 2.037121 TGACAGGCGAGATTGTCTTTGA 59.963 45.455 5.57 0.00 43.15 2.69
3345 4712 2.416747 TGACAGGCGAGATTGTCTTTG 58.583 47.619 5.57 0.00 43.15 2.77
3346 4713 2.839486 TGACAGGCGAGATTGTCTTT 57.161 45.000 5.57 0.00 43.15 2.52
3347 4714 4.471904 TTATGACAGGCGAGATTGTCTT 57.528 40.909 5.57 2.39 43.15 3.01
3348 4715 4.679373 ATTATGACAGGCGAGATTGTCT 57.321 40.909 5.57 0.00 43.15 3.41
3349 4716 4.024556 CCAATTATGACAGGCGAGATTGTC 60.025 45.833 0.00 0.00 43.07 3.18
3350 4717 3.879295 CCAATTATGACAGGCGAGATTGT 59.121 43.478 0.00 0.00 0.00 2.71
3351 4718 3.304257 GCCAATTATGACAGGCGAGATTG 60.304 47.826 0.00 0.00 37.41 2.67
3352 4719 2.880890 GCCAATTATGACAGGCGAGATT 59.119 45.455 0.00 0.00 37.41 2.40
3353 4720 2.498167 GCCAATTATGACAGGCGAGAT 58.502 47.619 0.00 0.00 37.41 2.75
3354 4721 1.953559 GCCAATTATGACAGGCGAGA 58.046 50.000 0.00 0.00 37.41 4.04
3359 4726 6.547141 TCTTATTCCTTGCCAATTATGACAGG 59.453 38.462 0.00 0.00 0.00 4.00
3360 4727 7.572523 TCTTATTCCTTGCCAATTATGACAG 57.427 36.000 0.00 0.00 0.00 3.51
3361 4728 7.615365 ACTTCTTATTCCTTGCCAATTATGACA 59.385 33.333 0.00 0.00 0.00 3.58
3362 4729 7.917505 CACTTCTTATTCCTTGCCAATTATGAC 59.082 37.037 0.00 0.00 0.00 3.06
3363 4730 7.416664 GCACTTCTTATTCCTTGCCAATTATGA 60.417 37.037 0.00 0.00 0.00 2.15
3364 4731 6.698766 GCACTTCTTATTCCTTGCCAATTATG 59.301 38.462 0.00 0.00 0.00 1.90
3365 4732 6.380846 TGCACTTCTTATTCCTTGCCAATTAT 59.619 34.615 0.00 0.00 0.00 1.28
3366 4733 5.714333 TGCACTTCTTATTCCTTGCCAATTA 59.286 36.000 0.00 0.00 0.00 1.40
3367 4734 4.527816 TGCACTTCTTATTCCTTGCCAATT 59.472 37.500 0.00 0.00 0.00 2.32
3368 4735 4.088634 TGCACTTCTTATTCCTTGCCAAT 58.911 39.130 0.00 0.00 0.00 3.16
3369 4736 3.495331 TGCACTTCTTATTCCTTGCCAA 58.505 40.909 0.00 0.00 0.00 4.52
3370 4737 3.084039 CTGCACTTCTTATTCCTTGCCA 58.916 45.455 0.00 0.00 0.00 4.92
3371 4738 3.772060 CTGCACTTCTTATTCCTTGCC 57.228 47.619 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.