Multiple sequence alignment - TraesCS5D01G557700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G557700 chr5D 100.000 5215 0 0 1 5215 559980536 559985750 0.000000e+00 9631.0
1 TraesCS5D01G557700 chr5D 91.632 2151 147 19 2094 4223 559917368 559919506 0.000000e+00 2944.0
2 TraesCS5D01G557700 chr5D 84.039 2030 274 27 2189 4187 555915303 555913293 0.000000e+00 1908.0
3 TraesCS5D01G557700 chr5D 81.577 1129 187 14 2150 3271 558718882 558719996 0.000000e+00 913.0
4 TraesCS5D01G557700 chr5D 82.373 902 141 12 1007 1904 555916818 555915931 0.000000e+00 769.0
5 TraesCS5D01G557700 chr5D 80.320 813 143 13 1059 1867 555456566 555455767 2.690000e-167 599.0
6 TraesCS5D01G557700 chr5D 91.784 426 34 1 996 1420 556017067 556016642 4.500000e-165 592.0
7 TraesCS5D01G557700 chr5D 75.359 836 137 41 3422 4226 555042087 555041290 6.470000e-89 339.0
8 TraesCS5D01G557700 chr5D 91.919 99 8 0 1 99 489770247 489770149 7.040000e-29 139.0
9 TraesCS5D01G557700 chr5D 100.000 33 0 0 2022 2054 559982520 559982552 1.570000e-05 62.1
10 TraesCS5D01G557700 chr5D 100.000 33 0 0 1985 2017 559982557 559982589 1.570000e-05 62.1
11 TraesCS5D01G557700 chr4A 91.230 1984 158 12 2171 4146 604849257 604847282 0.000000e+00 2686.0
12 TraesCS5D01G557700 chr4A 91.236 1780 136 8 2053 3819 604774635 604776407 0.000000e+00 2405.0
13 TraesCS5D01G557700 chr4A 89.922 1290 77 31 702 1963 604850518 604849254 0.000000e+00 1613.0
14 TraesCS5D01G557700 chr4A 88.343 1261 135 7 2892 4146 604831453 604830199 0.000000e+00 1504.0
15 TraesCS5D01G557700 chr4A 84.177 1106 168 6 2171 3272 604390705 604389603 0.000000e+00 1066.0
16 TraesCS5D01G557700 chr4A 91.506 624 33 10 4243 4852 604777113 604777730 0.000000e+00 841.0
17 TraesCS5D01G557700 chr4A 82.398 909 141 9 997 1902 604772913 604773805 0.000000e+00 774.0
18 TraesCS5D01G557700 chr4A 95.430 372 14 3 4247 4616 604829748 604829378 1.620000e-164 590.0
19 TraesCS5D01G557700 chr4A 92.264 349 13 7 4868 5213 604828663 604828326 2.820000e-132 483.0
20 TraesCS5D01G557700 chr4A 86.548 394 41 5 3265 3646 604839864 604839471 1.740000e-114 424.0
21 TraesCS5D01G557700 chr4A 92.000 300 22 1 106 405 604855205 604854908 2.250000e-113 420.0
22 TraesCS5D01G557700 chr4A 83.614 415 35 12 3806 4210 604838939 604838548 4.970000e-95 359.0
23 TraesCS5D01G557700 chr4A 83.754 357 51 5 3874 4228 604776406 604776757 1.080000e-86 331.0
24 TraesCS5D01G557700 chr4A 87.398 246 29 2 3411 3655 604384157 604383913 1.110000e-71 281.0
25 TraesCS5D01G557700 chr4A 93.023 129 6 1 4608 4736 604829006 604828881 8.920000e-43 185.0
26 TraesCS5D01G557700 chr4A 89.899 99 10 0 583 681 604853555 604853457 1.520000e-25 128.0
27 TraesCS5D01G557700 chr4A 97.260 73 2 0 4806 4878 604828853 604828781 1.970000e-24 124.0
28 TraesCS5D01G557700 chr4A 90.110 91 5 4 4312 4399 604839156 604839067 1.190000e-21 115.0
29 TraesCS5D01G557700 chr5B 89.255 1973 203 4 2171 4137 710344222 710346191 0.000000e+00 2460.0
30 TraesCS5D01G557700 chr5B 84.114 2008 265 26 2189 4160 695776971 695778960 0.000000e+00 1892.0
31 TraesCS5D01G557700 chr5B 83.342 1981 283 25 2171 4120 695423748 695425712 0.000000e+00 1786.0
32 TraesCS5D01G557700 chr5B 84.093 987 130 21 859 1834 695967391 695968361 0.000000e+00 928.0
33 TraesCS5D01G557700 chr5B 83.107 882 137 7 997 1875 710342745 710343617 0.000000e+00 793.0
34 TraesCS5D01G557700 chr5B 81.878 905 147 11 1007 1908 695775458 695776348 0.000000e+00 747.0
35 TraesCS5D01G557700 chr5B 81.949 831 138 8 1007 1834 695422385 695423206 0.000000e+00 693.0
36 TraesCS5D01G557700 chr5B 84.459 444 32 15 4243 4668 654703037 654703461 2.260000e-108 403.0
37 TraesCS5D01G557700 chr5B 83.596 445 34 17 4243 4668 536277037 536276613 1.060000e-101 381.0
38 TraesCS5D01G557700 chr5B 82.958 311 24 13 4250 4548 710346663 710346956 2.410000e-63 254.0
39 TraesCS5D01G557700 chr1B 80.529 832 148 12 1007 1834 597534290 597535111 1.230000e-175 627.0
40 TraesCS5D01G557700 chr1B 85.169 445 27 21 4243 4668 852567 852991 2.250000e-113 420.0
41 TraesCS5D01G557700 chr7B 84.753 446 26 21 4243 4668 551530998 551531421 4.860000e-110 409.0
42 TraesCS5D01G557700 chr3B 84.719 445 29 16 4243 4668 790104182 790103758 4.860000e-110 409.0
43 TraesCS5D01G557700 chr3B 83.753 437 33 17 4243 4661 812206295 812205879 3.810000e-101 379.0
44 TraesCS5D01G557700 chr6B 84.494 445 30 16 4243 4668 655982588 655982164 2.260000e-108 403.0
45 TraesCS5D01G557700 chr6B 84.270 445 31 16 4243 4668 515934285 515934709 1.050000e-106 398.0
46 TraesCS5D01G557700 chr6B 82.548 361 57 6 96 454 673407797 673407441 3.920000e-81 313.0
47 TraesCS5D01G557700 chr6B 80.398 352 48 6 120 452 673392667 673392318 1.120000e-61 248.0
48 TraesCS5D01G557700 chr2B 84.529 446 28 19 4243 4668 296345025 296344601 2.260000e-108 403.0
49 TraesCS5D01G557700 chr2B 84.494 445 30 18 4243 4668 542026931 542026507 2.260000e-108 403.0
50 TraesCS5D01G557700 chr1A 84.551 356 52 3 100 452 45893051 45892696 2.990000e-92 350.0
51 TraesCS5D01G557700 chr1D 83.003 353 51 7 100 447 20303460 20303112 1.410000e-80 311.0
52 TraesCS5D01G557700 chr7A 94.624 93 5 0 1 93 84967973 84968065 1.510000e-30 145.0
53 TraesCS5D01G557700 chr6D 93.548 93 6 0 1 93 21978965 21978873 7.040000e-29 139.0
54 TraesCS5D01G557700 chr6D 93.548 93 6 0 1 93 67555507 67555599 7.040000e-29 139.0
55 TraesCS5D01G557700 chr6D 93.548 93 6 0 1 93 176483346 176483438 7.040000e-29 139.0
56 TraesCS5D01G557700 chr6D 93.548 93 6 0 1 93 377096268 377096360 7.040000e-29 139.0
57 TraesCS5D01G557700 chr2A 92.784 97 6 1 1 97 117297590 117297495 7.040000e-29 139.0
58 TraesCS5D01G557700 chr2A 91.919 99 8 0 1 99 383502206 383502304 7.040000e-29 139.0
59 TraesCS5D01G557700 chr7D 91.837 98 8 0 1 98 492134231 492134328 2.530000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G557700 chr5D 559980536 559985750 5214 False 3251.733333 9631 100.000000 1 5215 3 chr5D.!!$F3 5214
1 TraesCS5D01G557700 chr5D 559917368 559919506 2138 False 2944.000000 2944 91.632000 2094 4223 1 chr5D.!!$F2 2129
2 TraesCS5D01G557700 chr5D 555913293 555916818 3525 True 1338.500000 1908 83.206000 1007 4187 2 chr5D.!!$R5 3180
3 TraesCS5D01G557700 chr5D 558718882 558719996 1114 False 913.000000 913 81.577000 2150 3271 1 chr5D.!!$F1 1121
4 TraesCS5D01G557700 chr5D 555455767 555456566 799 True 599.000000 599 80.320000 1059 1867 1 chr5D.!!$R3 808
5 TraesCS5D01G557700 chr5D 555041290 555042087 797 True 339.000000 339 75.359000 3422 4226 1 chr5D.!!$R2 804
6 TraesCS5D01G557700 chr4A 604847282 604855205 7923 True 1211.750000 2686 90.762750 106 4146 4 chr4A.!!$R5 4040
7 TraesCS5D01G557700 chr4A 604772913 604777730 4817 False 1087.750000 2405 87.223500 997 4852 4 chr4A.!!$F1 3855
8 TraesCS5D01G557700 chr4A 604389603 604390705 1102 True 1066.000000 1066 84.177000 2171 3272 1 chr4A.!!$R2 1101
9 TraesCS5D01G557700 chr4A 604828326 604831453 3127 True 577.200000 1504 93.264000 2892 5213 5 chr4A.!!$R3 2321
10 TraesCS5D01G557700 chr4A 604838548 604839864 1316 True 299.333333 424 86.757333 3265 4399 3 chr4A.!!$R4 1134
11 TraesCS5D01G557700 chr5B 695775458 695778960 3502 False 1319.500000 1892 82.996000 1007 4160 2 chr5B.!!$F4 3153
12 TraesCS5D01G557700 chr5B 695422385 695425712 3327 False 1239.500000 1786 82.645500 1007 4120 2 chr5B.!!$F3 3113
13 TraesCS5D01G557700 chr5B 710342745 710346956 4211 False 1169.000000 2460 85.106667 997 4548 3 chr5B.!!$F5 3551
14 TraesCS5D01G557700 chr5B 695967391 695968361 970 False 928.000000 928 84.093000 859 1834 1 chr5B.!!$F2 975
15 TraesCS5D01G557700 chr1B 597534290 597535111 821 False 627.000000 627 80.529000 1007 1834 1 chr1B.!!$F2 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 1824 0.034863 TGGGCGAGGTGGGATTAAAC 60.035 55.0 0.0 0.0 0.00 2.01 F
688 1866 0.109458 GGGACCGCCGAAAATGTTTC 60.109 55.0 0.0 0.0 33.83 2.78 F
807 4912 0.244994 TTGCTGTCCTTCTCGCTCTC 59.755 55.0 0.0 0.0 0.00 3.20 F
922 5054 0.678048 ATCCGCTTTTGCTCCACTCC 60.678 55.0 0.0 0.0 44.80 3.85 F
1954 6846 0.167470 CAGCTTGTGATCTGGCAACG 59.833 55.0 0.0 0.0 42.51 4.10 F
3610 8622 0.246910 GGTGGTTCCCTCGACTTCTC 59.753 60.0 0.0 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 6828 0.035317 TCGTTGCCAGATCACAAGCT 59.965 50.000 0.00 0.00 0.00 3.74 R
1950 6842 2.031769 TGCTGCAACTCAATTCTCGTTG 60.032 45.455 0.00 0.00 40.59 4.10 R
1954 6846 2.157738 ACCTGCTGCAACTCAATTCTC 58.842 47.619 3.02 0.00 0.00 2.87 R
2017 6909 3.441222 TGTAGCATGCCAACTTCATTGAG 59.559 43.478 15.66 0.00 41.23 3.02 R
3937 9341 1.131126 CCGACACACTGAATGGCATTC 59.869 52.381 28.92 28.92 39.70 2.67 R
4707 10970 0.539051 AGCACAGGAGCACATAGGAC 59.461 55.000 0.00 0.00 36.85 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.861033 CTTGTGACTCTCATTTTGAAAAATCA 57.139 30.769 0.00 0.00 36.52 2.57
26 27 9.304731 CTTGTGACTCTCATTTTGAAAAATCAA 57.695 29.630 0.00 0.00 36.52 2.57
27 28 8.633075 TGTGACTCTCATTTTGAAAAATCAAC 57.367 30.769 0.00 0.00 36.52 3.18
28 29 7.706179 TGTGACTCTCATTTTGAAAAATCAACC 59.294 33.333 0.00 0.00 36.52 3.77
29 30 7.922811 GTGACTCTCATTTTGAAAAATCAACCT 59.077 33.333 0.00 0.00 36.52 3.50
30 31 8.477256 TGACTCTCATTTTGAAAAATCAACCTT 58.523 29.630 0.00 0.00 36.52 3.50
31 32 9.965824 GACTCTCATTTTGAAAAATCAACCTTA 57.034 29.630 0.00 0.00 36.52 2.69
32 33 9.971922 ACTCTCATTTTGAAAAATCAACCTTAG 57.028 29.630 0.00 0.00 36.52 2.18
33 34 9.415544 CTCTCATTTTGAAAAATCAACCTTAGG 57.584 33.333 0.00 0.00 36.52 2.69
34 35 7.872483 TCTCATTTTGAAAAATCAACCTTAGGC 59.128 33.333 0.00 0.00 36.52 3.93
35 36 7.504403 TCATTTTGAAAAATCAACCTTAGGCA 58.496 30.769 0.00 0.00 36.52 4.75
36 37 7.989741 TCATTTTGAAAAATCAACCTTAGGCAA 59.010 29.630 0.00 0.00 36.52 4.52
37 38 7.784633 TTTTGAAAAATCAACCTTAGGCAAG 57.215 32.000 0.00 0.00 0.00 4.01
38 39 6.478512 TTGAAAAATCAACCTTAGGCAAGT 57.521 33.333 0.00 0.00 0.00 3.16
39 40 5.841810 TGAAAAATCAACCTTAGGCAAGTG 58.158 37.500 0.00 0.00 0.00 3.16
40 41 5.362430 TGAAAAATCAACCTTAGGCAAGTGT 59.638 36.000 0.00 0.00 0.00 3.55
41 42 4.853924 AAATCAACCTTAGGCAAGTGTG 57.146 40.909 0.00 0.00 0.00 3.82
42 43 2.270352 TCAACCTTAGGCAAGTGTGG 57.730 50.000 0.00 0.00 0.00 4.17
61 62 3.317603 GGCAACATTGTATGGCAAAGT 57.682 42.857 15.50 0.00 40.27 2.66
62 63 2.995258 GGCAACATTGTATGGCAAAGTG 59.005 45.455 15.50 0.00 38.77 3.16
63 64 3.554752 GGCAACATTGTATGGCAAAGTGT 60.555 43.478 15.50 0.00 38.77 3.55
64 65 3.429543 GCAACATTGTATGGCAAAGTGTG 59.570 43.478 0.00 0.00 38.77 3.82
65 66 3.940209 ACATTGTATGGCAAAGTGTGG 57.060 42.857 0.00 0.00 40.91 4.17
75 76 2.061028 GCAAAGTGTGGCATTGTTAGC 58.939 47.619 0.00 0.00 0.00 3.09
84 85 2.298610 GGCATTGTTAGCCCTAGAACC 58.701 52.381 0.00 0.00 46.50 3.62
85 86 2.356741 GGCATTGTTAGCCCTAGAACCA 60.357 50.000 0.00 0.00 46.50 3.67
86 87 3.352648 GCATTGTTAGCCCTAGAACCAA 58.647 45.455 0.00 0.00 0.00 3.67
87 88 3.761752 GCATTGTTAGCCCTAGAACCAAA 59.238 43.478 0.00 0.00 0.00 3.28
88 89 4.380550 GCATTGTTAGCCCTAGAACCAAAC 60.381 45.833 0.00 0.00 0.00 2.93
89 90 4.440826 TTGTTAGCCCTAGAACCAAACA 57.559 40.909 0.00 0.00 0.00 2.83
90 91 4.015872 TGTTAGCCCTAGAACCAAACAG 57.984 45.455 0.00 0.00 0.00 3.16
91 92 2.747989 GTTAGCCCTAGAACCAAACAGC 59.252 50.000 0.00 0.00 0.00 4.40
92 93 0.038310 AGCCCTAGAACCAAACAGCC 59.962 55.000 0.00 0.00 0.00 4.85
93 94 0.038310 GCCCTAGAACCAAACAGCCT 59.962 55.000 0.00 0.00 0.00 4.58
94 95 1.950954 GCCCTAGAACCAAACAGCCTC 60.951 57.143 0.00 0.00 0.00 4.70
95 96 1.676014 CCCTAGAACCAAACAGCCTCG 60.676 57.143 0.00 0.00 0.00 4.63
96 97 1.002087 CCTAGAACCAAACAGCCTCGT 59.998 52.381 0.00 0.00 0.00 4.18
97 98 2.232941 CCTAGAACCAAACAGCCTCGTA 59.767 50.000 0.00 0.00 0.00 3.43
98 99 2.457366 AGAACCAAACAGCCTCGTAG 57.543 50.000 0.00 0.00 0.00 3.51
99 100 0.796927 GAACCAAACAGCCTCGTAGC 59.203 55.000 0.00 0.00 0.00 3.58
100 101 0.605589 AACCAAACAGCCTCGTAGCC 60.606 55.000 0.00 0.00 0.00 3.93
101 102 1.745489 CCAAACAGCCTCGTAGCCC 60.745 63.158 0.00 0.00 0.00 5.19
102 103 1.296715 CAAACAGCCTCGTAGCCCT 59.703 57.895 0.00 0.00 0.00 5.19
103 104 0.741221 CAAACAGCCTCGTAGCCCTC 60.741 60.000 0.00 0.00 0.00 4.30
104 105 2.227089 AAACAGCCTCGTAGCCCTCG 62.227 60.000 0.00 0.00 0.00 4.63
118 119 1.740718 GCCCTCGACTCTGGTCAATTC 60.741 57.143 0.00 0.00 42.21 2.17
120 121 1.469940 CCTCGACTCTGGTCAATTCGG 60.470 57.143 0.00 0.00 42.21 4.30
123 124 2.099263 TCGACTCTGGTCAATTCGGATC 59.901 50.000 0.00 0.00 42.21 3.36
161 162 1.107945 TGCATTCAGGTGATGCATGG 58.892 50.000 2.46 0.00 45.14 3.66
173 174 0.256752 ATGCATGGTGGCTTCAGCTA 59.743 50.000 0.00 0.00 41.70 3.32
187 188 5.127491 GCTTCAGCTACTTCTCTCCTACTA 58.873 45.833 0.00 0.00 38.21 1.82
200 201 5.043281 TCTCTCCTACTATTCCACCCTCTTT 60.043 44.000 0.00 0.00 0.00 2.52
201 202 5.600749 TCTCCTACTATTCCACCCTCTTTT 58.399 41.667 0.00 0.00 0.00 2.27
214 215 5.183904 CCACCCTCTTTTGACCATCTTTAAG 59.816 44.000 0.00 0.00 0.00 1.85
227 228 5.359292 ACCATCTTTAAGTACCTACTCGTCC 59.641 44.000 0.00 0.00 34.99 4.79
235 236 5.565455 AGTACCTACTCGTCCTTAGCTAT 57.435 43.478 0.00 0.00 0.00 2.97
238 239 7.160726 AGTACCTACTCGTCCTTAGCTATAAG 58.839 42.308 0.00 0.00 38.53 1.73
265 266 2.693591 CCTCTATGAAGTTCACCGGCTA 59.306 50.000 7.96 0.00 0.00 3.93
266 267 3.322254 CCTCTATGAAGTTCACCGGCTAT 59.678 47.826 7.96 0.00 0.00 2.97
267 268 4.523173 CCTCTATGAAGTTCACCGGCTATA 59.477 45.833 7.96 0.00 0.00 1.31
292 293 5.736358 GCGAACTTTTGTCATTCTCATCATC 59.264 40.000 0.00 0.00 0.00 2.92
293 294 6.253746 CGAACTTTTGTCATTCTCATCATCC 58.746 40.000 0.00 0.00 0.00 3.51
317 318 4.820716 ACGTACTAGCCGAATATGTCTTCT 59.179 41.667 9.17 0.00 0.00 2.85
324 325 3.061139 GCCGAATATGTCTTCTTTCGTCG 60.061 47.826 0.00 0.00 39.33 5.12
327 328 4.430908 GAATATGTCTTCTTTCGTCGGGT 58.569 43.478 0.00 0.00 0.00 5.28
344 345 2.542595 CGGGTTTCGTATGTATGAAGCC 59.457 50.000 15.52 15.52 45.98 4.35
349 350 5.118203 GGTTTCGTATGTATGAAGCCGATAC 59.882 44.000 10.74 0.00 40.89 2.24
351 352 3.192001 TCGTATGTATGAAGCCGATACCC 59.808 47.826 0.00 0.00 0.00 3.69
358 359 2.766875 GAAGCCGATACCCTAGCCGC 62.767 65.000 0.00 0.00 0.00 6.53
405 406 0.770499 TGCAATTGAGGTCCCAGTGA 59.230 50.000 10.34 0.00 0.00 3.41
419 1387 2.594592 GTGAGTGCCGCAAACCCT 60.595 61.111 0.00 0.00 0.00 4.34
420 1388 1.302192 GTGAGTGCCGCAAACCCTA 60.302 57.895 0.00 0.00 0.00 3.53
428 1396 0.879090 CCGCAAACCCTACTGAAACC 59.121 55.000 0.00 0.00 0.00 3.27
433 1401 3.670625 CAAACCCTACTGAAACCATCGA 58.329 45.455 0.00 0.00 0.00 3.59
442 1410 4.814294 AACCATCGAGCCGACGGC 62.814 66.667 31.49 31.49 43.33 5.68
463 1433 3.479006 CACGGAAAAACATAGAGCAACG 58.521 45.455 0.00 0.00 0.00 4.10
473 1443 4.377021 ACATAGAGCAACGACAAAACTGA 58.623 39.130 0.00 0.00 0.00 3.41
475 1445 3.951979 AGAGCAACGACAAAACTGAAG 57.048 42.857 0.00 0.00 0.00 3.02
479 1449 5.054390 AGCAACGACAAAACTGAAGAAAA 57.946 34.783 0.00 0.00 0.00 2.29
481 1451 5.344933 AGCAACGACAAAACTGAAGAAAAAC 59.655 36.000 0.00 0.00 0.00 2.43
482 1452 5.717491 GCAACGACAAAACTGAAGAAAAACG 60.717 40.000 0.00 0.00 0.00 3.60
488 1458 9.588774 CGACAAAACTGAAGAAAAACGAATATA 57.411 29.630 0.00 0.00 0.00 0.86
541 1511 8.539544 TCTCTTTCATTGGACTATCAACATACA 58.460 33.333 0.00 0.00 0.00 2.29
542 1512 9.334947 CTCTTTCATTGGACTATCAACATACAT 57.665 33.333 0.00 0.00 0.00 2.29
551 1597 9.059260 TGGACTATCAACATACATGAATTGATG 57.941 33.333 19.37 3.09 40.93 3.07
574 1620 7.615582 TGAACCTAATGCAACAAGAGATAAG 57.384 36.000 0.00 0.00 0.00 1.73
581 1627 6.674694 ATGCAACAAGAGATAAGCTTACTG 57.325 37.500 8.70 4.33 0.00 2.74
588 1766 3.447586 AGAGATAAGCTTACTGCCGTCAA 59.552 43.478 8.70 0.00 44.23 3.18
591 1769 0.107831 AAGCTTACTGCCGTCAACCA 59.892 50.000 0.00 0.00 44.23 3.67
619 1797 0.684153 ATTTAAGCTGGTGGGCGCAT 60.684 50.000 10.83 0.00 37.29 4.73
627 1805 4.760047 GTGGGCGCATGTCCGACT 62.760 66.667 10.83 0.00 45.48 4.18
634 1812 2.202797 CATGTCCGACTGGGCGAG 60.203 66.667 0.00 0.00 45.48 5.03
646 1824 0.034863 TGGGCGAGGTGGGATTAAAC 60.035 55.000 0.00 0.00 0.00 2.01
684 1862 2.696759 GGTGGGACCGCCGAAAATG 61.697 63.158 5.00 0.00 36.83 2.32
686 1864 1.228306 TGGGACCGCCGAAAATGTT 60.228 52.632 0.00 0.00 33.83 2.71
687 1865 0.824182 TGGGACCGCCGAAAATGTTT 60.824 50.000 0.00 0.00 33.83 2.83
688 1866 0.109458 GGGACCGCCGAAAATGTTTC 60.109 55.000 0.00 0.00 33.83 2.78
690 1868 1.401018 GGACCGCCGAAAATGTTTCTG 60.401 52.381 0.00 0.00 0.00 3.02
692 1870 1.535462 ACCGCCGAAAATGTTTCTGAG 59.465 47.619 0.00 0.00 0.00 3.35
693 1871 1.606606 CGCCGAAAATGTTTCTGAGC 58.393 50.000 0.00 0.00 0.00 4.26
696 1874 3.380142 GCCGAAAATGTTTCTGAGCAAA 58.620 40.909 0.00 0.00 0.00 3.68
700 4796 6.145371 GCCGAAAATGTTTCTGAGCAAAATTA 59.855 34.615 0.00 0.00 0.00 1.40
707 4803 3.476295 TCTGAGCAAAATTAAGCTGCG 57.524 42.857 9.06 1.38 42.04 5.18
709 4805 1.202114 TGAGCAAAATTAAGCTGCGGG 59.798 47.619 9.06 0.00 42.04 6.13
739 4835 1.151908 TGGAAAGACCAAACCCGGG 59.848 57.895 22.25 22.25 46.75 5.73
745 4841 3.008408 ACCAAACCCGGGTCAACA 58.992 55.556 30.40 0.00 31.49 3.33
746 4842 1.306970 ACCAAACCCGGGTCAACAA 59.693 52.632 30.40 0.00 31.49 2.83
747 4843 0.753848 ACCAAACCCGGGTCAACAAG 60.754 55.000 30.40 15.13 31.49 3.16
748 4844 1.362355 CAAACCCGGGTCAACAAGC 59.638 57.895 30.40 0.00 0.00 4.01
749 4845 1.106944 CAAACCCGGGTCAACAAGCT 61.107 55.000 30.40 5.21 0.00 3.74
750 4846 0.396556 AAACCCGGGTCAACAAGCTT 60.397 50.000 30.40 12.40 0.00 3.74
752 4848 1.228124 CCCGGGTCAACAAGCTTCA 60.228 57.895 14.18 0.00 0.00 3.02
753 4849 1.515521 CCCGGGTCAACAAGCTTCAC 61.516 60.000 14.18 0.00 0.00 3.18
760 4865 0.954452 CAACAAGCTTCACCACTCCC 59.046 55.000 0.00 0.00 0.00 4.30
797 4902 4.335647 CCGCCACCTTGCTGTCCT 62.336 66.667 0.00 0.00 0.00 3.85
798 4903 2.281761 CGCCACCTTGCTGTCCTT 60.282 61.111 0.00 0.00 0.00 3.36
799 4904 2.328099 CGCCACCTTGCTGTCCTTC 61.328 63.158 0.00 0.00 0.00 3.46
800 4905 1.073897 GCCACCTTGCTGTCCTTCT 59.926 57.895 0.00 0.00 0.00 2.85
801 4906 0.957888 GCCACCTTGCTGTCCTTCTC 60.958 60.000 0.00 0.00 0.00 2.87
802 4907 0.671781 CCACCTTGCTGTCCTTCTCG 60.672 60.000 0.00 0.00 0.00 4.04
803 4908 1.004440 ACCTTGCTGTCCTTCTCGC 60.004 57.895 0.00 0.00 0.00 5.03
804 4909 1.294780 CCTTGCTGTCCTTCTCGCT 59.705 57.895 0.00 0.00 0.00 4.93
805 4910 0.739112 CCTTGCTGTCCTTCTCGCTC 60.739 60.000 0.00 0.00 0.00 5.03
806 4911 0.246086 CTTGCTGTCCTTCTCGCTCT 59.754 55.000 0.00 0.00 0.00 4.09
807 4912 0.244994 TTGCTGTCCTTCTCGCTCTC 59.755 55.000 0.00 0.00 0.00 3.20
808 4913 1.140804 GCTGTCCTTCTCGCTCTCC 59.859 63.158 0.00 0.00 0.00 3.71
809 4914 1.813192 CTGTCCTTCTCGCTCTCCC 59.187 63.158 0.00 0.00 0.00 4.30
810 4915 0.967887 CTGTCCTTCTCGCTCTCCCA 60.968 60.000 0.00 0.00 0.00 4.37
811 4916 1.251527 TGTCCTTCTCGCTCTCCCAC 61.252 60.000 0.00 0.00 0.00 4.61
812 4917 0.968393 GTCCTTCTCGCTCTCCCACT 60.968 60.000 0.00 0.00 0.00 4.00
816 4921 1.595993 TTCTCGCTCTCCCACTTCCG 61.596 60.000 0.00 0.00 0.00 4.30
822 4927 3.003173 CTCCCACTTCCGCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
844 4949 2.809601 CGTCTCCTCCCAAACGCG 60.810 66.667 3.53 3.53 0.00 6.01
847 4952 3.121030 CTCCTCCCAAACGCGCAG 61.121 66.667 5.73 2.42 0.00 5.18
877 4984 1.737793 ACCACGAAATCTTGCGAATCC 59.262 47.619 0.00 0.00 0.00 3.01
922 5054 0.678048 ATCCGCTTTTGCTCCACTCC 60.678 55.000 0.00 0.00 44.80 3.85
925 5057 1.172180 CGCTTTTGCTCCACTCCCAA 61.172 55.000 0.00 0.00 44.80 4.12
940 5072 0.831288 CCCAATCCCAGCACCACAAA 60.831 55.000 0.00 0.00 0.00 2.83
944 5076 0.827507 ATCCCAGCACCACAAACACC 60.828 55.000 0.00 0.00 0.00 4.16
950 5082 1.435515 CACCACAAACACCCAACGG 59.564 57.895 0.00 0.00 0.00 4.44
954 5086 1.410882 CCACAAACACCCAACGGATTT 59.589 47.619 0.00 0.00 0.00 2.17
955 5087 2.159028 CCACAAACACCCAACGGATTTT 60.159 45.455 0.00 0.00 0.00 1.82
956 5088 3.068307 CCACAAACACCCAACGGATTTTA 59.932 43.478 0.00 0.00 0.00 1.52
957 5089 4.045783 CACAAACACCCAACGGATTTTAC 58.954 43.478 0.00 0.00 0.00 2.01
1176 5312 4.003788 ACCAAGCTGGACGACCCG 62.004 66.667 8.91 0.00 40.96 5.28
1421 5557 3.221964 CAAGGATTGTTACAAGCTGCC 57.778 47.619 13.09 7.06 42.34 4.85
1426 5562 3.625764 GGATTGTTACAAGCTGCCGAATA 59.374 43.478 13.09 0.00 0.00 1.75
1645 5781 4.151417 CAAATGAGGTTTGCCGCG 57.849 55.556 0.00 0.00 40.62 6.46
1854 5990 9.813446 AGGTAACGTCGATCTTTATTATTTCTT 57.187 29.630 0.00 0.00 46.39 2.52
1875 6011 4.987408 TTTAACAGATGTGCCATCCATG 57.013 40.909 10.46 7.04 0.00 3.66
1936 6828 9.848710 TCCGGTAAATGTACAATATTATTTCCA 57.151 29.630 0.00 0.00 31.21 3.53
1954 6846 0.167470 CAGCTTGTGATCTGGCAACG 59.833 55.000 0.00 0.00 42.51 4.10
1959 6851 2.768253 TGTGATCTGGCAACGAGAAT 57.232 45.000 0.00 0.00 42.51 2.40
1966 6858 2.807967 TCTGGCAACGAGAATTGAGTTG 59.192 45.455 10.97 10.97 45.59 3.16
1970 6862 2.578495 CAACGAGAATTGAGTTGCAGC 58.422 47.619 0.00 0.00 38.73 5.25
1971 6863 1.882912 ACGAGAATTGAGTTGCAGCA 58.117 45.000 2.55 0.00 0.00 4.41
1972 6864 1.802960 ACGAGAATTGAGTTGCAGCAG 59.197 47.619 2.55 0.00 0.00 4.24
1973 6865 1.129998 CGAGAATTGAGTTGCAGCAGG 59.870 52.381 2.55 0.00 0.00 4.85
1976 6868 3.753272 GAGAATTGAGTTGCAGCAGGTTA 59.247 43.478 2.55 0.00 0.00 2.85
1977 6869 4.144297 AGAATTGAGTTGCAGCAGGTTAA 58.856 39.130 2.55 0.00 0.00 2.01
1978 6870 4.584325 AGAATTGAGTTGCAGCAGGTTAAA 59.416 37.500 2.55 0.00 0.00 1.52
1980 6872 4.727507 TTGAGTTGCAGCAGGTTAAAAA 57.272 36.364 2.55 0.00 0.00 1.94
1981 6873 4.935352 TGAGTTGCAGCAGGTTAAAAAT 57.065 36.364 2.55 0.00 0.00 1.82
1982 6874 4.619973 TGAGTTGCAGCAGGTTAAAAATG 58.380 39.130 2.55 0.00 0.00 2.32
1983 6875 3.392882 AGTTGCAGCAGGTTAAAAATGC 58.607 40.909 2.55 0.70 40.29 3.56
1984 6876 3.129871 GTTGCAGCAGGTTAAAAATGCA 58.870 40.909 0.00 0.00 42.45 3.96
1985 6877 3.681593 TGCAGCAGGTTAAAAATGCAT 57.318 38.095 0.00 0.00 42.45 3.96
1986 6878 3.327626 TGCAGCAGGTTAAAAATGCATG 58.672 40.909 0.00 0.00 42.45 4.06
1987 6879 3.006644 TGCAGCAGGTTAAAAATGCATGA 59.993 39.130 0.00 0.00 42.45 3.07
1988 6880 3.995705 GCAGCAGGTTAAAAATGCATGAA 59.004 39.130 0.00 0.00 42.45 2.57
1989 6881 4.092383 GCAGCAGGTTAAAAATGCATGAAG 59.908 41.667 0.00 0.00 42.45 3.02
1990 6882 5.232463 CAGCAGGTTAAAAATGCATGAAGT 58.768 37.500 0.00 0.00 42.45 3.01
1991 6883 5.697633 CAGCAGGTTAAAAATGCATGAAGTT 59.302 36.000 0.00 0.00 42.45 2.66
1992 6884 5.697633 AGCAGGTTAAAAATGCATGAAGTTG 59.302 36.000 0.00 0.00 42.45 3.16
1993 6885 5.106987 GCAGGTTAAAAATGCATGAAGTTGG 60.107 40.000 0.00 0.00 39.75 3.77
1994 6886 4.996758 AGGTTAAAAATGCATGAAGTTGGC 59.003 37.500 0.00 0.00 0.00 4.52
1995 6887 4.754114 GGTTAAAAATGCATGAAGTTGGCA 59.246 37.500 0.00 0.00 42.43 4.92
1997 6889 6.308675 GTTAAAAATGCATGAAGTTGGCATG 58.691 36.000 0.00 0.00 46.77 4.06
2005 6897 5.700722 CATGAAGTTGGCATGCTACATAT 57.299 39.130 18.92 8.89 37.00 1.78
2006 6898 5.458015 CATGAAGTTGGCATGCTACATATG 58.542 41.667 18.92 15.48 37.00 1.78
2007 6899 4.525996 TGAAGTTGGCATGCTACATATGT 58.474 39.130 18.92 13.93 0.00 2.29
2008 6900 5.679601 TGAAGTTGGCATGCTACATATGTA 58.320 37.500 18.92 14.75 0.00 2.29
2009 6901 6.118852 TGAAGTTGGCATGCTACATATGTAA 58.881 36.000 18.92 3.52 0.00 2.41
2010 6902 6.601217 TGAAGTTGGCATGCTACATATGTAAA 59.399 34.615 18.92 8.43 0.00 2.01
2011 6903 7.121907 TGAAGTTGGCATGCTACATATGTAAAA 59.878 33.333 18.92 8.09 0.00 1.52
2012 6904 7.587037 AGTTGGCATGCTACATATGTAAAAT 57.413 32.000 18.92 9.88 0.00 1.82
2041 6933 5.192176 TCAATGAAGTTGGCATGCTACATA 58.808 37.500 18.92 7.12 38.39 2.29
2042 6934 5.829391 TCAATGAAGTTGGCATGCTACATAT 59.171 36.000 18.92 8.89 38.39 1.78
2043 6935 5.700722 ATGAAGTTGGCATGCTACATATG 57.299 39.130 18.92 0.00 0.00 1.78
2044 6936 4.525996 TGAAGTTGGCATGCTACATATGT 58.474 39.130 18.92 13.93 0.00 2.29
2045 6937 5.679601 TGAAGTTGGCATGCTACATATGTA 58.320 37.500 18.92 14.75 0.00 2.29
2046 6938 6.118852 TGAAGTTGGCATGCTACATATGTAA 58.881 36.000 18.92 3.52 0.00 2.41
2047 6939 6.601217 TGAAGTTGGCATGCTACATATGTAAA 59.399 34.615 18.92 8.43 0.00 2.01
2048 6940 7.121907 TGAAGTTGGCATGCTACATATGTAAAA 59.878 33.333 18.92 8.09 0.00 1.52
2049 6941 7.587037 AGTTGGCATGCTACATATGTAAAAT 57.413 32.000 18.92 9.88 0.00 1.82
2050 6942 8.690203 AGTTGGCATGCTACATATGTAAAATA 57.310 30.769 18.92 4.22 0.00 1.40
3202 8174 4.870991 CCAGCTAAAGTACCTCAGCTTTAC 59.129 45.833 9.36 0.00 42.33 2.01
3285 8257 7.385205 CCCTAGATTTTACGAATACAGATGTGG 59.615 40.741 0.00 0.00 0.00 4.17
3309 8281 6.127140 GGAAGAGTTACCTGCTGGAATTACTA 60.127 42.308 17.64 0.00 37.04 1.82
3487 8489 4.095483 GGAACTCAATGTGCATCTTGGTAG 59.905 45.833 10.28 5.35 0.00 3.18
3542 8547 0.968393 AGGCGTTCCTCTCCTCACTC 60.968 60.000 0.00 0.00 38.72 3.51
3556 8561 0.466007 TCACTCTGCAAGCTTGGCAA 60.466 50.000 27.10 14.08 41.39 4.52
3610 8622 0.246910 GGTGGTTCCCTCGACTTCTC 59.753 60.000 0.00 0.00 0.00 2.87
3647 8659 4.323333 CCTCTGCCATCTTCTCTTCAAAGA 60.323 45.833 0.00 0.00 37.18 2.52
3733 9021 2.102252 ACCTTGCCGATCTCTTGATCTC 59.898 50.000 0.00 0.00 45.10 2.75
3799 9191 1.592669 CATCCTTACTCCGCCTGCG 60.593 63.158 4.20 4.20 39.44 5.18
3937 9341 3.129988 CCCAAGCTTGAGGAAATTAGCAG 59.870 47.826 28.05 5.81 36.11 4.24
3938 9342 4.012374 CCAAGCTTGAGGAAATTAGCAGA 58.988 43.478 28.05 0.00 36.11 4.26
3939 9343 4.460382 CCAAGCTTGAGGAAATTAGCAGAA 59.540 41.667 28.05 0.00 36.11 3.02
4023 9430 3.575630 TGTCTCAAACGAGCTCACATAC 58.424 45.455 15.40 2.83 0.00 2.39
4043 9450 2.228103 ACTACTTGATGACGAAGACGCA 59.772 45.455 0.00 0.00 43.96 5.24
4101 9508 5.059161 TCAGGAAAGAAGCGGATATCAATG 58.941 41.667 4.83 0.00 0.00 2.82
4126 9533 4.373156 ACCATCCTGCAGTTACTTTTCT 57.627 40.909 13.81 0.00 0.00 2.52
4160 9573 3.194542 AGGAAGAGGACAATGAAGAGACG 59.805 47.826 0.00 0.00 0.00 4.18
4162 9575 2.530701 AGAGGACAATGAAGAGACGGT 58.469 47.619 0.00 0.00 0.00 4.83
4166 9579 1.464997 GACAATGAAGAGACGGTTGCC 59.535 52.381 0.00 0.00 0.00 4.52
4239 10066 0.966920 TCAGAACCCTGTCGGAACTC 59.033 55.000 0.00 0.00 41.16 3.01
4294 10165 5.810080 ATATTCTGTTCCCAGTAGCTACC 57.190 43.478 20.31 4.51 39.82 3.18
4536 10420 5.745227 AGGTGAAGTATCATGGAACGAATT 58.255 37.500 0.00 0.00 38.01 2.17
4661 10924 7.837202 ATGAAAGATGGTGCAAATACAAATG 57.163 32.000 0.00 0.00 0.00 2.32
4707 10970 6.020440 CAGCTGTATTTGTGTTGAAACAGTTG 60.020 38.462 5.25 0.00 40.05 3.16
4785 11048 1.875963 CAAGGTGTTGTGCCGATCC 59.124 57.895 0.00 0.00 0.00 3.36
4804 11080 1.757118 CCACTTATGCCGAGAAGAGGA 59.243 52.381 0.00 0.00 34.13 3.71
4828 11106 4.237724 GCTTTTAGGTGTTTCATTCAGGC 58.762 43.478 0.00 0.00 0.00 4.85
4889 11295 2.526077 CTGTATCTTGCGCACGTCTAA 58.474 47.619 11.12 0.00 0.00 2.10
4953 11359 3.165875 TCTCCTTTCTAGACTGGTGGTG 58.834 50.000 9.32 2.30 0.00 4.17
4954 11360 1.623811 TCCTTTCTAGACTGGTGGTGC 59.376 52.381 9.32 0.00 0.00 5.01
4955 11361 1.339151 CCTTTCTAGACTGGTGGTGCC 60.339 57.143 0.00 0.00 37.90 5.01
4956 11362 1.625818 CTTTCTAGACTGGTGGTGCCT 59.374 52.381 0.00 0.00 38.35 4.75
5017 11423 3.133721 AGCTGTGAGATATGAGGTTGGAC 59.866 47.826 0.00 0.00 0.00 4.02
5026 11432 1.639722 TGAGGTTGGACGAGGAATCA 58.360 50.000 0.00 0.00 0.00 2.57
5035 11441 1.133407 GACGAGGAATCAAGCTCGACT 59.867 52.381 12.89 0.00 41.24 4.18
5057 11463 5.479375 ACTTTCTCGGACACTTTATCCAGTA 59.521 40.000 0.00 0.00 35.83 2.74
5061 11467 5.237996 TCTCGGACACTTTATCCAGTATACG 59.762 44.000 0.00 0.00 35.83 3.06
5062 11468 4.883585 TCGGACACTTTATCCAGTATACGT 59.116 41.667 0.00 0.00 35.83 3.57
5063 11469 6.054941 TCGGACACTTTATCCAGTATACGTA 58.945 40.000 0.00 0.00 35.83 3.57
5064 11470 6.017934 TCGGACACTTTATCCAGTATACGTAC 60.018 42.308 0.00 0.00 35.83 3.67
5115 11524 6.494893 TGTATGCTCACAACTTTTCATACC 57.505 37.500 0.00 0.00 36.88 2.73
5118 11527 3.496884 TGCTCACAACTTTTCATACCGTC 59.503 43.478 0.00 0.00 0.00 4.79
5131 11540 3.313526 TCATACCGTCGCTTCCTAGTTAC 59.686 47.826 0.00 0.00 0.00 2.50
5132 11541 1.831580 ACCGTCGCTTCCTAGTTACT 58.168 50.000 0.00 0.00 0.00 2.24
5133 11542 2.991250 ACCGTCGCTTCCTAGTTACTA 58.009 47.619 0.00 0.00 0.00 1.82
5134 11543 2.680339 ACCGTCGCTTCCTAGTTACTAC 59.320 50.000 0.00 0.00 0.00 2.73
5136 11545 4.122776 CCGTCGCTTCCTAGTTACTACTA 58.877 47.826 0.00 0.00 35.78 1.82
5137 11546 4.025313 CCGTCGCTTCCTAGTTACTACTAC 60.025 50.000 0.00 0.00 35.78 2.73
5138 11547 4.568359 CGTCGCTTCCTAGTTACTACTACA 59.432 45.833 0.00 0.00 35.78 2.74
5139 11548 5.236047 CGTCGCTTCCTAGTTACTACTACAT 59.764 44.000 0.00 0.00 35.78 2.29
5140 11549 6.428799 GTCGCTTCCTAGTTACTACTACATG 58.571 44.000 0.00 0.00 35.78 3.21
5168 11577 4.575236 CCTTGGAAGACATGATGATCACTG 59.425 45.833 0.00 0.43 0.00 3.66
5195 11604 6.150976 TGTTGTTCCATAAGCTGTATTTGGAG 59.849 38.462 0.00 0.00 37.74 3.86
5199 11608 5.611374 TCCATAAGCTGTATTTGGAGCTAC 58.389 41.667 0.00 0.00 44.97 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.861033 TGATTTTTCAAAATGAGAGTCACAAG 57.139 30.769 2.17 0.00 38.64 3.16
1 2 9.086336 GTTGATTTTTCAAAATGAGAGTCACAA 57.914 29.630 2.17 0.00 38.64 3.33
2 3 7.706179 GGTTGATTTTTCAAAATGAGAGTCACA 59.294 33.333 2.17 0.00 38.64 3.58
3 4 7.922811 AGGTTGATTTTTCAAAATGAGAGTCAC 59.077 33.333 2.17 0.00 38.64 3.67
4 5 8.010733 AGGTTGATTTTTCAAAATGAGAGTCA 57.989 30.769 2.17 0.00 38.64 3.41
5 6 8.877808 AAGGTTGATTTTTCAAAATGAGAGTC 57.122 30.769 2.17 0.00 38.64 3.36
6 7 9.971922 CTAAGGTTGATTTTTCAAAATGAGAGT 57.028 29.630 2.17 0.00 38.64 3.24
7 8 9.415544 CCTAAGGTTGATTTTTCAAAATGAGAG 57.584 33.333 2.17 0.00 38.64 3.20
8 9 7.872483 GCCTAAGGTTGATTTTTCAAAATGAGA 59.128 33.333 2.17 0.00 38.64 3.27
9 10 7.656948 TGCCTAAGGTTGATTTTTCAAAATGAG 59.343 33.333 2.17 0.00 38.64 2.90
10 11 7.504403 TGCCTAAGGTTGATTTTTCAAAATGA 58.496 30.769 2.17 0.00 38.64 2.57
11 12 7.727331 TGCCTAAGGTTGATTTTTCAAAATG 57.273 32.000 2.17 0.00 38.64 2.32
12 13 7.992608 ACTTGCCTAAGGTTGATTTTTCAAAAT 59.007 29.630 0.00 0.00 38.46 1.82
13 14 7.279758 CACTTGCCTAAGGTTGATTTTTCAAAA 59.720 33.333 0.00 0.00 38.26 2.44
14 15 6.760770 CACTTGCCTAAGGTTGATTTTTCAAA 59.239 34.615 0.00 0.00 38.26 2.69
15 16 6.127196 ACACTTGCCTAAGGTTGATTTTTCAA 60.127 34.615 0.00 0.00 38.26 2.69
16 17 5.362430 ACACTTGCCTAAGGTTGATTTTTCA 59.638 36.000 0.00 0.00 38.26 2.69
17 18 5.691754 CACACTTGCCTAAGGTTGATTTTTC 59.308 40.000 0.00 0.00 38.26 2.29
18 19 5.453198 CCACACTTGCCTAAGGTTGATTTTT 60.453 40.000 0.00 0.00 38.26 1.94
19 20 4.039124 CCACACTTGCCTAAGGTTGATTTT 59.961 41.667 0.00 0.00 38.26 1.82
20 21 3.573967 CCACACTTGCCTAAGGTTGATTT 59.426 43.478 0.00 0.00 38.26 2.17
21 22 3.157087 CCACACTTGCCTAAGGTTGATT 58.843 45.455 0.00 0.00 38.26 2.57
22 23 2.795329 CCACACTTGCCTAAGGTTGAT 58.205 47.619 0.00 0.00 38.26 2.57
23 24 1.817740 GCCACACTTGCCTAAGGTTGA 60.818 52.381 0.00 0.00 38.26 3.18
24 25 0.598065 GCCACACTTGCCTAAGGTTG 59.402 55.000 0.00 0.00 38.26 3.77
25 26 0.184933 TGCCACACTTGCCTAAGGTT 59.815 50.000 0.00 0.00 38.26 3.50
26 27 0.184933 TTGCCACACTTGCCTAAGGT 59.815 50.000 0.00 0.00 38.26 3.50
27 28 0.598065 GTTGCCACACTTGCCTAAGG 59.402 55.000 0.00 0.00 38.26 2.69
28 29 1.317613 TGTTGCCACACTTGCCTAAG 58.682 50.000 0.00 0.00 39.86 2.18
29 30 1.993956 ATGTTGCCACACTTGCCTAA 58.006 45.000 0.00 0.00 35.03 2.69
30 31 1.612950 CAATGTTGCCACACTTGCCTA 59.387 47.619 0.00 0.00 35.03 3.93
31 32 0.390124 CAATGTTGCCACACTTGCCT 59.610 50.000 0.00 0.00 35.03 4.75
32 33 0.104671 ACAATGTTGCCACACTTGCC 59.895 50.000 0.00 0.00 35.03 4.52
33 34 2.791383 TACAATGTTGCCACACTTGC 57.209 45.000 0.00 0.00 35.03 4.01
34 35 3.577667 CCATACAATGTTGCCACACTTG 58.422 45.455 0.00 2.61 35.03 3.16
35 36 2.029110 GCCATACAATGTTGCCACACTT 60.029 45.455 0.00 0.00 35.03 3.16
36 37 1.545582 GCCATACAATGTTGCCACACT 59.454 47.619 0.00 0.00 35.03 3.55
37 38 1.271934 TGCCATACAATGTTGCCACAC 59.728 47.619 0.00 0.00 35.03 3.82
38 39 1.625511 TGCCATACAATGTTGCCACA 58.374 45.000 0.00 0.00 37.31 4.17
39 40 2.739885 TTGCCATACAATGTTGCCAC 57.260 45.000 0.00 0.00 31.73 5.01
40 41 2.632028 ACTTTGCCATACAATGTTGCCA 59.368 40.909 0.00 0.00 42.31 4.92
41 42 2.995258 CACTTTGCCATACAATGTTGCC 59.005 45.455 0.00 0.00 42.31 4.52
42 43 3.429543 CACACTTTGCCATACAATGTTGC 59.570 43.478 0.00 0.00 42.31 4.17
43 44 3.989167 CCACACTTTGCCATACAATGTTG 59.011 43.478 0.00 0.00 42.31 3.33
44 45 3.554752 GCCACACTTTGCCATACAATGTT 60.555 43.478 0.00 0.00 42.31 2.71
45 46 2.029110 GCCACACTTTGCCATACAATGT 60.029 45.455 0.00 0.00 44.92 2.71
46 47 2.029200 TGCCACACTTTGCCATACAATG 60.029 45.455 0.00 0.00 38.31 2.82
47 48 2.246469 TGCCACACTTTGCCATACAAT 58.754 42.857 0.00 0.00 38.31 2.71
48 49 1.697284 TGCCACACTTTGCCATACAA 58.303 45.000 0.00 0.00 36.13 2.41
49 50 1.921982 ATGCCACACTTTGCCATACA 58.078 45.000 0.00 0.00 0.00 2.29
50 51 2.029110 ACAATGCCACACTTTGCCATAC 60.029 45.455 0.00 0.00 37.01 2.39
51 52 2.246469 ACAATGCCACACTTTGCCATA 58.754 42.857 0.00 0.00 37.01 2.74
52 53 1.050204 ACAATGCCACACTTTGCCAT 58.950 45.000 0.00 0.00 37.01 4.40
53 54 0.829333 AACAATGCCACACTTTGCCA 59.171 45.000 0.00 0.00 37.01 4.92
54 55 2.676076 CTAACAATGCCACACTTTGCC 58.324 47.619 0.00 0.00 37.01 4.52
55 56 2.061028 GCTAACAATGCCACACTTTGC 58.939 47.619 0.00 0.00 37.01 3.68
65 66 2.999331 TGGTTCTAGGGCTAACAATGC 58.001 47.619 0.00 0.00 0.00 3.56
66 67 4.764823 TGTTTGGTTCTAGGGCTAACAATG 59.235 41.667 0.00 0.00 0.00 2.82
67 68 4.993028 TGTTTGGTTCTAGGGCTAACAAT 58.007 39.130 0.00 0.00 0.00 2.71
68 69 4.394729 CTGTTTGGTTCTAGGGCTAACAA 58.605 43.478 0.00 0.00 0.00 2.83
69 70 3.809324 GCTGTTTGGTTCTAGGGCTAACA 60.809 47.826 0.00 0.00 0.00 2.41
70 71 2.747989 GCTGTTTGGTTCTAGGGCTAAC 59.252 50.000 0.00 0.00 0.00 2.34
71 72 2.290705 GGCTGTTTGGTTCTAGGGCTAA 60.291 50.000 0.00 0.00 0.00 3.09
72 73 1.280998 GGCTGTTTGGTTCTAGGGCTA 59.719 52.381 0.00 0.00 0.00 3.93
73 74 0.038310 GGCTGTTTGGTTCTAGGGCT 59.962 55.000 0.00 0.00 0.00 5.19
74 75 0.038310 AGGCTGTTTGGTTCTAGGGC 59.962 55.000 0.00 0.00 0.00 5.19
75 76 1.676014 CGAGGCTGTTTGGTTCTAGGG 60.676 57.143 0.00 0.00 0.00 3.53
76 77 1.002087 ACGAGGCTGTTTGGTTCTAGG 59.998 52.381 0.00 0.00 0.00 3.02
77 78 2.457366 ACGAGGCTGTTTGGTTCTAG 57.543 50.000 0.00 0.00 0.00 2.43
78 79 2.353406 GCTACGAGGCTGTTTGGTTCTA 60.353 50.000 0.00 0.00 0.00 2.10
79 80 1.608283 GCTACGAGGCTGTTTGGTTCT 60.608 52.381 0.00 0.00 0.00 3.01
80 81 0.796927 GCTACGAGGCTGTTTGGTTC 59.203 55.000 0.00 0.00 0.00 3.62
81 82 0.605589 GGCTACGAGGCTGTTTGGTT 60.606 55.000 0.00 0.00 37.85 3.67
82 83 1.003718 GGCTACGAGGCTGTTTGGT 60.004 57.895 0.00 0.00 37.85 3.67
83 84 1.745489 GGGCTACGAGGCTGTTTGG 60.745 63.158 0.00 0.00 41.09 3.28
84 85 0.741221 GAGGGCTACGAGGCTGTTTG 60.741 60.000 0.00 0.00 41.09 2.93
85 86 1.597461 GAGGGCTACGAGGCTGTTT 59.403 57.895 0.00 0.00 41.09 2.83
86 87 2.711922 CGAGGGCTACGAGGCTGTT 61.712 63.158 0.00 0.00 41.09 3.16
87 88 3.141488 CGAGGGCTACGAGGCTGT 61.141 66.667 0.00 0.00 41.09 4.40
88 89 2.829003 TCGAGGGCTACGAGGCTG 60.829 66.667 0.00 0.00 41.09 4.85
89 90 2.829458 GTCGAGGGCTACGAGGCT 60.829 66.667 6.78 0.00 41.09 4.58
90 91 2.829458 AGTCGAGGGCTACGAGGC 60.829 66.667 6.78 0.00 40.37 4.70
91 92 1.153127 AGAGTCGAGGGCTACGAGG 60.153 63.158 6.78 0.00 40.37 4.63
92 93 1.440938 CCAGAGTCGAGGGCTACGAG 61.441 65.000 6.78 0.00 40.37 4.18
93 94 1.451567 CCAGAGTCGAGGGCTACGA 60.452 63.158 0.00 2.97 37.43 3.43
94 95 1.716826 GACCAGAGTCGAGGGCTACG 61.717 65.000 9.13 0.00 32.18 3.51
95 96 0.680280 TGACCAGAGTCGAGGGCTAC 60.680 60.000 11.23 1.13 46.74 3.58
96 97 0.039180 TTGACCAGAGTCGAGGGCTA 59.961 55.000 11.23 1.83 46.74 3.93
97 98 0.616111 ATTGACCAGAGTCGAGGGCT 60.616 55.000 11.23 0.00 46.74 5.19
98 99 0.250513 AATTGACCAGAGTCGAGGGC 59.749 55.000 9.13 6.59 46.74 5.19
99 100 1.469940 CGAATTGACCAGAGTCGAGGG 60.470 57.143 9.13 3.73 46.74 4.30
100 101 1.469940 CCGAATTGACCAGAGTCGAGG 60.470 57.143 3.43 3.43 46.74 4.63
101 102 1.472878 TCCGAATTGACCAGAGTCGAG 59.527 52.381 0.00 0.00 46.74 4.04
102 103 1.541379 TCCGAATTGACCAGAGTCGA 58.459 50.000 0.00 0.00 46.74 4.20
103 104 2.464865 GATCCGAATTGACCAGAGTCG 58.535 52.381 0.00 0.00 46.74 4.18
104 105 2.464865 CGATCCGAATTGACCAGAGTC 58.535 52.381 0.00 0.00 43.83 3.36
118 119 0.822164 ACTTCACTTACCCCGATCCG 59.178 55.000 0.00 0.00 0.00 4.18
120 121 3.604875 TGAACTTCACTTACCCCGATC 57.395 47.619 0.00 0.00 0.00 3.69
123 124 2.161609 GCATTGAACTTCACTTACCCCG 59.838 50.000 0.00 0.00 0.00 5.73
161 162 2.418060 GGAGAGAAGTAGCTGAAGCCAC 60.418 54.545 0.00 0.00 43.38 5.01
173 174 4.233287 AGGGTGGAATAGTAGGAGAGAAGT 59.767 45.833 0.00 0.00 0.00 3.01
187 188 3.334881 AGATGGTCAAAAGAGGGTGGAAT 59.665 43.478 0.00 0.00 0.00 3.01
200 201 6.435277 ACGAGTAGGTACTTAAAGATGGTCAA 59.565 38.462 0.00 0.00 41.75 3.18
201 202 5.948162 ACGAGTAGGTACTTAAAGATGGTCA 59.052 40.000 0.00 0.00 41.75 4.02
214 215 7.158021 TCTTATAGCTAAGGACGAGTAGGTAC 58.842 42.308 0.00 0.00 35.92 3.34
227 228 9.935241 TTCATAGAGGCAATTCTTATAGCTAAG 57.065 33.333 0.00 0.00 36.46 2.18
235 236 6.823689 GGTGAACTTCATAGAGGCAATTCTTA 59.176 38.462 0.00 0.00 0.00 2.10
238 239 4.034510 CGGTGAACTTCATAGAGGCAATTC 59.965 45.833 0.00 0.00 0.00 2.17
265 266 6.595326 TGATGAGAATGACAAAAGTTCGCTAT 59.405 34.615 0.00 0.00 0.00 2.97
266 267 5.931724 TGATGAGAATGACAAAAGTTCGCTA 59.068 36.000 0.00 0.00 0.00 4.26
267 268 4.756642 TGATGAGAATGACAAAAGTTCGCT 59.243 37.500 0.00 0.00 0.00 4.93
292 293 3.252701 AGACATATTCGGCTAGTACGTGG 59.747 47.826 0.00 0.00 0.00 4.94
293 294 4.485024 AGACATATTCGGCTAGTACGTG 57.515 45.455 0.00 3.34 0.00 4.49
317 318 2.437200 ACATACGAAACCCGACGAAA 57.563 45.000 0.00 0.00 41.76 3.46
324 325 2.542595 CGGCTTCATACATACGAAACCC 59.457 50.000 0.00 0.00 0.00 4.11
327 328 5.224888 GGTATCGGCTTCATACATACGAAA 58.775 41.667 0.00 0.00 33.86 3.46
344 345 2.561885 CTCGCGGCTAGGGTATCG 59.438 66.667 6.13 0.00 0.00 2.92
358 359 2.097202 GCGCATATCAACACTTAGCTCG 60.097 50.000 0.30 0.00 0.00 5.03
405 406 1.302511 CAGTAGGGTTTGCGGCACT 60.303 57.895 0.05 0.00 0.00 4.40
419 1387 1.135199 GTCGGCTCGATGGTTTCAGTA 60.135 52.381 0.67 0.00 38.42 2.74
420 1388 0.389948 GTCGGCTCGATGGTTTCAGT 60.390 55.000 0.67 0.00 38.42 3.41
442 1410 3.185594 TCGTTGCTCTATGTTTTTCCGTG 59.814 43.478 0.00 0.00 0.00 4.94
451 1421 4.377021 TCAGTTTTGTCGTTGCTCTATGT 58.623 39.130 0.00 0.00 0.00 2.29
522 1492 9.673454 CAATTCATGTATGTTGATAGTCCAATG 57.327 33.333 0.00 0.00 0.00 2.82
541 1511 7.172868 TGTTGCATTAGGTTCATCAATTCAT 57.827 32.000 0.00 0.00 0.00 2.57
542 1512 6.587206 TGTTGCATTAGGTTCATCAATTCA 57.413 33.333 0.00 0.00 0.00 2.57
551 1597 6.317391 AGCTTATCTCTTGTTGCATTAGGTTC 59.683 38.462 0.00 0.00 0.00 3.62
560 1606 4.201861 GGCAGTAAGCTTATCTCTTGTTGC 60.202 45.833 9.88 9.28 44.79 4.17
574 1620 0.237498 GTTGGTTGACGGCAGTAAGC 59.763 55.000 0.00 0.00 44.65 3.09
591 1769 2.160813 CACCAGCTTAAATAACCGCGTT 59.839 45.455 4.92 1.95 0.00 4.84
598 1776 1.099689 GCGCCCACCAGCTTAAATAA 58.900 50.000 0.00 0.00 0.00 1.40
619 1797 4.988716 ACCTCGCCCAGTCGGACA 62.989 66.667 11.27 0.00 0.00 4.02
624 1802 1.335132 TAATCCCACCTCGCCCAGTC 61.335 60.000 0.00 0.00 0.00 3.51
625 1803 0.912487 TTAATCCCACCTCGCCCAGT 60.912 55.000 0.00 0.00 0.00 4.00
627 1805 0.034863 GTTTAATCCCACCTCGCCCA 60.035 55.000 0.00 0.00 0.00 5.36
634 1812 5.068591 AGTTTGACTTGTGTTTAATCCCACC 59.931 40.000 0.00 0.00 0.00 4.61
681 1859 6.146673 GCAGCTTAATTTTGCTCAGAAACATT 59.853 34.615 2.45 0.00 37.44 2.71
682 1860 5.636543 GCAGCTTAATTTTGCTCAGAAACAT 59.363 36.000 2.45 0.00 37.44 2.71
684 1862 4.089065 CGCAGCTTAATTTTGCTCAGAAAC 59.911 41.667 2.45 0.00 37.44 2.78
686 1864 3.366273 CCGCAGCTTAATTTTGCTCAGAA 60.366 43.478 2.45 0.00 37.44 3.02
687 1865 2.162208 CCGCAGCTTAATTTTGCTCAGA 59.838 45.455 2.45 0.00 37.44 3.27
688 1866 2.523015 CCGCAGCTTAATTTTGCTCAG 58.477 47.619 2.45 1.09 37.44 3.35
690 1868 1.469767 CCCCGCAGCTTAATTTTGCTC 60.470 52.381 2.45 0.00 37.44 4.26
692 1870 0.246360 ACCCCGCAGCTTAATTTTGC 59.754 50.000 0.00 0.00 34.58 3.68
693 1871 2.029470 TCAACCCCGCAGCTTAATTTTG 60.029 45.455 0.00 0.00 0.00 2.44
696 1874 1.173913 GTCAACCCCGCAGCTTAATT 58.826 50.000 0.00 0.00 0.00 1.40
700 4796 2.281761 CAGTCAACCCCGCAGCTT 60.282 61.111 0.00 0.00 0.00 3.74
707 4803 2.158667 TCTTTCCAAGTCAGTCAACCCC 60.159 50.000 0.00 0.00 0.00 4.95
709 4805 2.879026 GGTCTTTCCAAGTCAGTCAACC 59.121 50.000 0.00 0.00 35.97 3.77
732 4828 0.822121 GAAGCTTGTTGACCCGGGTT 60.822 55.000 30.89 12.07 0.00 4.11
733 4829 1.228154 GAAGCTTGTTGACCCGGGT 60.228 57.895 30.81 30.81 0.00 5.28
734 4830 1.228124 TGAAGCTTGTTGACCCGGG 60.228 57.895 22.25 22.25 0.00 5.73
735 4831 1.515521 GGTGAAGCTTGTTGACCCGG 61.516 60.000 2.10 0.00 0.00 5.73
736 4832 0.817634 TGGTGAAGCTTGTTGACCCG 60.818 55.000 2.10 0.00 0.00 5.28
739 4835 1.604278 GGAGTGGTGAAGCTTGTTGAC 59.396 52.381 2.10 0.00 0.00 3.18
741 4837 0.954452 GGGAGTGGTGAAGCTTGTTG 59.046 55.000 2.10 0.00 0.00 3.33
742 4838 0.178990 GGGGAGTGGTGAAGCTTGTT 60.179 55.000 2.10 0.00 0.00 2.83
743 4839 1.062488 AGGGGAGTGGTGAAGCTTGT 61.062 55.000 2.10 0.00 0.00 3.16
744 4840 0.322008 GAGGGGAGTGGTGAAGCTTG 60.322 60.000 2.10 0.00 0.00 4.01
745 4841 1.492993 GGAGGGGAGTGGTGAAGCTT 61.493 60.000 0.00 0.00 0.00 3.74
746 4842 1.920835 GGAGGGGAGTGGTGAAGCT 60.921 63.158 0.00 0.00 0.00 3.74
747 4843 1.904990 GAGGAGGGGAGTGGTGAAGC 61.905 65.000 0.00 0.00 0.00 3.86
748 4844 0.252467 AGAGGAGGGGAGTGGTGAAG 60.252 60.000 0.00 0.00 0.00 3.02
749 4845 0.545309 CAGAGGAGGGGAGTGGTGAA 60.545 60.000 0.00 0.00 0.00 3.18
750 4846 1.079256 CAGAGGAGGGGAGTGGTGA 59.921 63.158 0.00 0.00 0.00 4.02
752 4848 2.284995 GCAGAGGAGGGGAGTGGT 60.285 66.667 0.00 0.00 0.00 4.16
753 4849 2.040278 AGCAGAGGAGGGGAGTGG 59.960 66.667 0.00 0.00 0.00 4.00
789 4894 1.599606 GGAGAGCGAGAAGGACAGCA 61.600 60.000 0.00 0.00 0.00 4.41
793 4898 0.968393 AGTGGGAGAGCGAGAAGGAC 60.968 60.000 0.00 0.00 0.00 3.85
794 4899 0.251832 AAGTGGGAGAGCGAGAAGGA 60.252 55.000 0.00 0.00 0.00 3.36
796 4901 0.174617 GGAAGTGGGAGAGCGAGAAG 59.825 60.000 0.00 0.00 0.00 2.85
797 4902 1.595993 CGGAAGTGGGAGAGCGAGAA 61.596 60.000 0.00 0.00 0.00 2.87
798 4903 2.046864 CGGAAGTGGGAGAGCGAGA 61.047 63.158 0.00 0.00 0.00 4.04
799 4904 2.492090 CGGAAGTGGGAGAGCGAG 59.508 66.667 0.00 0.00 0.00 5.03
800 4905 3.760035 GCGGAAGTGGGAGAGCGA 61.760 66.667 0.00 0.00 0.00 4.93
801 4906 4.821589 GGCGGAAGTGGGAGAGCG 62.822 72.222 0.00 0.00 0.00 5.03
802 4907 3.378399 GAGGCGGAAGTGGGAGAGC 62.378 68.421 0.00 0.00 0.00 4.09
803 4908 2.726351 GGAGGCGGAAGTGGGAGAG 61.726 68.421 0.00 0.00 0.00 3.20
804 4909 2.683933 GGAGGCGGAAGTGGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
805 4910 3.003173 TGGAGGCGGAAGTGGGAG 61.003 66.667 0.00 0.00 0.00 4.30
806 4911 3.319198 GTGGAGGCGGAAGTGGGA 61.319 66.667 0.00 0.00 0.00 4.37
807 4912 4.410400 GGTGGAGGCGGAAGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
808 4913 4.760047 CGGTGGAGGCGGAAGTGG 62.760 72.222 0.00 0.00 0.00 4.00
844 4949 2.393768 CGTGGTCCAGTGATGCTGC 61.394 63.158 0.00 0.00 43.71 5.25
847 4952 1.398390 GATTTCGTGGTCCAGTGATGC 59.602 52.381 0.00 0.00 0.00 3.91
922 5054 0.318120 GTTTGTGGTGCTGGGATTGG 59.682 55.000 0.00 0.00 0.00 3.16
925 5057 0.827507 GGTGTTTGTGGTGCTGGGAT 60.828 55.000 0.00 0.00 0.00 3.85
940 5072 2.933573 TGTGTAAAATCCGTTGGGTGT 58.066 42.857 0.00 0.00 33.83 4.16
944 5076 5.065859 TGCATCTATGTGTAAAATCCGTTGG 59.934 40.000 0.00 0.00 0.00 3.77
950 5082 6.316140 TCACCACTGCATCTATGTGTAAAATC 59.684 38.462 2.78 0.00 0.00 2.17
954 5086 4.758688 CTCACCACTGCATCTATGTGTAA 58.241 43.478 2.78 0.00 0.00 2.41
955 5087 3.430790 GCTCACCACTGCATCTATGTGTA 60.431 47.826 2.78 0.00 0.00 2.90
956 5088 2.679059 GCTCACCACTGCATCTATGTGT 60.679 50.000 2.78 0.00 0.00 3.72
957 5089 1.938577 GCTCACCACTGCATCTATGTG 59.061 52.381 0.00 0.00 0.00 3.21
985 5117 3.945434 CATGGATGGCGACGCTGC 61.945 66.667 20.77 6.72 0.00 5.25
1176 5312 2.435059 GCCTTGACCTGGTCGCTC 60.435 66.667 21.15 7.30 34.95 5.03
1274 5410 4.680237 TGAAGCCGCCGTGGTCTG 62.680 66.667 0.00 0.00 41.21 3.51
1281 5417 2.358737 AACTCCTTGAAGCCGCCG 60.359 61.111 0.00 0.00 0.00 6.46
1421 5557 2.564771 TGCTGGAAGGAGCATTATTCG 58.435 47.619 0.00 0.00 44.16 3.34
1470 5606 3.616595 GCAAAAAGTGCGTGCAGG 58.383 55.556 1.01 1.01 45.10 4.85
1645 5781 5.012893 ACAATCAAACTCCCCTTGAATCTC 58.987 41.667 0.00 0.00 36.43 2.75
1875 6011 6.040166 AGTGGATGAAATATCAAGAACCATGC 59.960 38.462 0.00 0.00 39.49 4.06
1936 6828 0.035317 TCGTTGCCAGATCACAAGCT 59.965 50.000 0.00 0.00 0.00 3.74
1950 6842 2.031769 TGCTGCAACTCAATTCTCGTTG 60.032 45.455 0.00 0.00 40.59 4.10
1954 6846 2.157738 ACCTGCTGCAACTCAATTCTC 58.842 47.619 3.02 0.00 0.00 2.87
1959 6851 4.727507 TTTTTAACCTGCTGCAACTCAA 57.272 36.364 3.02 0.00 0.00 3.02
1966 6858 3.587923 TCATGCATTTTTAACCTGCTGC 58.412 40.909 0.00 0.00 36.84 5.25
1967 6859 5.232463 ACTTCATGCATTTTTAACCTGCTG 58.768 37.500 0.00 0.00 36.84 4.41
1968 6860 5.473066 ACTTCATGCATTTTTAACCTGCT 57.527 34.783 0.00 0.00 36.84 4.24
1969 6861 5.106987 CCAACTTCATGCATTTTTAACCTGC 60.107 40.000 0.00 0.00 36.45 4.85
1970 6862 5.106987 GCCAACTTCATGCATTTTTAACCTG 60.107 40.000 0.00 0.00 0.00 4.00
1971 6863 4.996758 GCCAACTTCATGCATTTTTAACCT 59.003 37.500 0.00 0.00 0.00 3.50
1972 6864 4.754114 TGCCAACTTCATGCATTTTTAACC 59.246 37.500 0.00 0.00 0.00 2.85
1973 6865 5.921004 TGCCAACTTCATGCATTTTTAAC 57.079 34.783 0.00 0.00 0.00 2.01
1983 6875 5.009310 ACATATGTAGCATGCCAACTTCATG 59.991 40.000 15.66 17.24 43.02 3.07
1984 6876 5.135383 ACATATGTAGCATGCCAACTTCAT 58.865 37.500 15.66 7.97 0.00 2.57
1985 6877 4.525996 ACATATGTAGCATGCCAACTTCA 58.474 39.130 15.66 0.00 0.00 3.02
1986 6878 6.618287 TTACATATGTAGCATGCCAACTTC 57.382 37.500 15.66 0.00 0.00 3.01
1987 6879 7.403312 TTTTACATATGTAGCATGCCAACTT 57.597 32.000 15.66 13.41 0.00 2.66
1988 6880 7.587037 ATTTTACATATGTAGCATGCCAACT 57.413 32.000 15.66 0.00 0.00 3.16
1989 6881 9.743057 TTTATTTTACATATGTAGCATGCCAAC 57.257 29.630 15.66 13.88 0.00 3.77
2005 6897 9.638239 GCCAACTTCATTGAGATTTATTTTACA 57.362 29.630 0.00 0.00 41.23 2.41
2006 6898 9.638239 TGCCAACTTCATTGAGATTTATTTTAC 57.362 29.630 0.00 0.00 41.23 2.01
2008 6900 9.158233 CATGCCAACTTCATTGAGATTTATTTT 57.842 29.630 0.00 0.00 41.23 1.82
2009 6901 7.279313 GCATGCCAACTTCATTGAGATTTATTT 59.721 33.333 6.36 0.00 41.23 1.40
2010 6902 6.759827 GCATGCCAACTTCATTGAGATTTATT 59.240 34.615 6.36 0.00 41.23 1.40
2011 6903 6.097839 AGCATGCCAACTTCATTGAGATTTAT 59.902 34.615 15.66 0.00 41.23 1.40
2012 6904 5.419788 AGCATGCCAACTTCATTGAGATTTA 59.580 36.000 15.66 0.00 41.23 1.40
2017 6909 3.441222 TGTAGCATGCCAACTTCATTGAG 59.559 43.478 15.66 0.00 41.23 3.02
2022 6914 4.525996 ACATATGTAGCATGCCAACTTCA 58.474 39.130 15.66 0.00 0.00 3.02
2023 6915 6.618287 TTACATATGTAGCATGCCAACTTC 57.382 37.500 15.66 0.00 0.00 3.01
2132 7090 9.956640 ATTATGATAAGGGATTCAGCTAGAAAG 57.043 33.333 0.00 0.00 40.22 2.62
2141 7111 9.081204 CATCAACCAATTATGATAAGGGATTCA 57.919 33.333 11.31 0.00 34.61 2.57
2185 7155 8.867935 CGATGATGATGAGATACCTACAAAATC 58.132 37.037 0.00 0.00 0.00 2.17
3202 8174 1.873591 GCTTTGATATACCTGTGCCCG 59.126 52.381 0.00 0.00 0.00 6.13
3309 8281 2.224305 GGTGTTGTAGTTCAGTCAGCCT 60.224 50.000 0.00 0.00 0.00 4.58
3477 8461 5.178252 CGCAAGATACATTCCTACCAAGATG 59.822 44.000 0.00 0.00 43.02 2.90
3542 8547 1.663702 GCAGTTGCCAAGCTTGCAG 60.664 57.895 21.43 9.60 40.35 4.41
3576 8581 4.025480 GGAACCACCGTACGCATTTATAAG 60.025 45.833 10.49 0.00 0.00 1.73
3577 8582 3.870419 GGAACCACCGTACGCATTTATAA 59.130 43.478 10.49 0.00 0.00 0.98
3686 8851 4.894784 TGAGTTCTGGTGTAATCCACTTC 58.105 43.478 0.00 0.00 43.94 3.01
3703 8868 4.080863 AGAGATCGGCAAGGTTAATGAGTT 60.081 41.667 0.00 0.00 0.00 3.01
3733 9021 4.252971 TCTTCCGTCAGTTCAGTTAAGG 57.747 45.455 0.00 0.00 0.00 2.69
3799 9191 5.183904 ACAAACTTCTTTGATGGCCATAGTC 59.816 40.000 20.84 8.25 39.43 2.59
3937 9341 1.131126 CCGACACACTGAATGGCATTC 59.869 52.381 28.92 28.92 39.70 2.67
3938 9342 1.167851 CCGACACACTGAATGGCATT 58.832 50.000 13.54 13.54 0.00 3.56
3939 9343 1.308069 GCCGACACACTGAATGGCAT 61.308 55.000 0.00 0.00 42.03 4.40
3989 9396 4.507021 CGTTTGAGACATGAGAGATGATGG 59.493 45.833 0.00 0.00 0.00 3.51
4023 9430 2.863739 TGCGTCTTCGTCATCAAGTAG 58.136 47.619 0.00 0.00 39.49 2.57
4043 9450 1.615392 GCCTTGCATTCTGAAGGTGTT 59.385 47.619 3.85 0.00 40.89 3.32
4076 9483 4.635223 TGATATCCGCTTCTTTCCTGATG 58.365 43.478 0.00 0.00 0.00 3.07
4101 9508 0.811281 GTAACTGCAGGATGGTTGGC 59.189 55.000 19.93 0.00 35.86 4.52
4126 9533 0.777446 CTCTTCCTTTGGTTCCCCCA 59.223 55.000 0.00 0.00 43.27 4.96
4160 9573 1.376037 CTCCTCTTCACCGGCAACC 60.376 63.158 0.00 0.00 0.00 3.77
4162 9575 0.321671 CTTCTCCTCTTCACCGGCAA 59.678 55.000 0.00 0.00 0.00 4.52
4166 9579 0.891373 TGCTCTTCTCCTCTTCACCG 59.109 55.000 0.00 0.00 0.00 4.94
4172 9585 2.520069 TCTTCGTTGCTCTTCTCCTCT 58.480 47.619 0.00 0.00 0.00 3.69
4223 9636 0.966920 TCAGAGTTCCGACAGGGTTC 59.033 55.000 0.00 0.00 38.33 3.62
4239 10066 4.579869 ACAACAACAGCCTAGGTATTCAG 58.420 43.478 11.31 0.00 0.00 3.02
4294 10165 2.094545 GCTTAGGTCCCAACAAATGCAG 60.095 50.000 0.00 0.00 0.00 4.41
4536 10420 7.277539 GTCATTCAACTTGGAACACATCAAAAA 59.722 33.333 0.00 0.00 39.29 1.94
4631 10894 8.190122 TGTATTTGCACCATCTTTCATATCAAC 58.810 33.333 0.00 0.00 0.00 3.18
4661 10924 5.799213 CTGAGGGAGTATATCATTTGGGAC 58.201 45.833 0.00 0.00 0.00 4.46
4707 10970 0.539051 AGCACAGGAGCACATAGGAC 59.461 55.000 0.00 0.00 36.85 3.85
4744 11007 1.337728 CGGCCTATGTGTGTGACAAGA 60.338 52.381 0.00 0.00 38.36 3.02
4785 11048 2.796383 CGTCCTCTTCTCGGCATAAGTG 60.796 54.545 0.00 0.00 0.00 3.16
4804 11080 4.023193 CCTGAATGAAACACCTAAAAGCGT 60.023 41.667 0.00 0.00 0.00 5.07
4828 11106 3.675775 GCAGAGCAGAGGAAACAGAGTAG 60.676 52.174 0.00 0.00 0.00 2.57
4889 11295 0.957395 CTGCAAGAATGGACACGCCT 60.957 55.000 0.00 0.00 34.14 5.52
4928 11334 4.159506 CCACCAGTCTAGAAAGGAGAAGAG 59.840 50.000 16.44 2.24 0.00 2.85
4953 11359 6.277918 GCAAAAATCAATGCAATAGTAGGC 57.722 37.500 0.00 0.00 42.12 3.93
5035 11441 4.884668 ACTGGATAAAGTGTCCGAGAAA 57.115 40.909 0.00 0.00 38.64 2.52
5057 11463 3.574284 TGCCTTGTGTTACGTACGTAT 57.426 42.857 27.30 6.27 0.00 3.06
5061 11467 2.091588 CGACATGCCTTGTGTTACGTAC 59.908 50.000 0.00 0.00 39.18 3.67
5062 11468 2.288334 ACGACATGCCTTGTGTTACGTA 60.288 45.455 0.00 0.00 39.18 3.57
5063 11469 1.144969 CGACATGCCTTGTGTTACGT 58.855 50.000 0.00 0.00 39.18 3.57
5064 11470 1.144969 ACGACATGCCTTGTGTTACG 58.855 50.000 0.00 0.00 39.18 3.18
5105 11511 2.618053 AGGAAGCGACGGTATGAAAAG 58.382 47.619 0.00 0.00 0.00 2.27
5115 11524 4.568359 TGTAGTAGTAACTAGGAAGCGACG 59.432 45.833 0.00 0.00 38.89 5.12
5118 11527 5.008811 AGCATGTAGTAGTAACTAGGAAGCG 59.991 44.000 0.00 0.00 38.89 4.68
5131 11540 5.582665 GTCTTCCAAGGAAAGCATGTAGTAG 59.417 44.000 2.78 0.00 33.34 2.57
5132 11541 5.012664 TGTCTTCCAAGGAAAGCATGTAGTA 59.987 40.000 2.78 0.00 33.34 1.82
5133 11542 4.202461 TGTCTTCCAAGGAAAGCATGTAGT 60.202 41.667 2.78 0.00 33.34 2.73
5134 11543 4.326826 TGTCTTCCAAGGAAAGCATGTAG 58.673 43.478 2.78 0.00 33.34 2.74
5136 11545 3.228188 TGTCTTCCAAGGAAAGCATGT 57.772 42.857 2.78 0.00 33.34 3.21
5137 11546 3.760151 TCATGTCTTCCAAGGAAAGCATG 59.240 43.478 24.35 24.35 41.78 4.06
5138 11547 4.038271 TCATGTCTTCCAAGGAAAGCAT 57.962 40.909 2.78 7.34 33.34 3.79
5139 11548 3.507162 TCATGTCTTCCAAGGAAAGCA 57.493 42.857 2.78 5.41 33.34 3.91
5140 11549 4.012374 TCATCATGTCTTCCAAGGAAAGC 58.988 43.478 2.78 0.00 33.34 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.