Multiple sequence alignment - TraesCS5D01G557400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G557400 chr5D 100.000 2586 0 0 1 2586 559900412 559902997 0.000000e+00 4776.0
1 TraesCS5D01G557400 chr5D 85.965 1254 95 26 535 1762 556378421 556377223 0.000000e+00 1266.0
2 TraesCS5D01G557400 chr5D 81.627 332 20 17 1853 2152 556377110 556376788 1.200000e-58 237.0
3 TraesCS5D01G557400 chr5B 93.477 1303 47 8 1 1300 694176543 694177810 0.000000e+00 1901.0
4 TraesCS5D01G557400 chr5B 85.564 1233 107 34 553 1755 694299107 694300298 0.000000e+00 1225.0
5 TraesCS5D01G557400 chr5B 91.667 720 47 8 1057 1764 710335921 710336639 0.000000e+00 985.0
6 TraesCS5D01G557400 chr5B 92.977 655 24 5 1750 2386 710337938 710338588 0.000000e+00 935.0
7 TraesCS5D01G557400 chr5B 86.383 470 33 18 1311 1762 694177795 694178251 3.870000e-133 484.0
8 TraesCS5D01G557400 chr5B 98.256 172 2 1 2416 2586 710339005 710339176 1.500000e-77 300.0
9 TraesCS5D01G557400 chr5B 80.506 395 27 15 1786 2154 694302361 694302731 9.180000e-65 257.0
10 TraesCS5D01G557400 chr5B 85.909 220 16 10 1853 2060 694178363 694178579 1.200000e-53 220.0
11 TraesCS5D01G557400 chr4A 90.119 1174 67 11 599 1762 613422466 613423600 0.000000e+00 1480.0
12 TraesCS5D01G557400 chr4A 93.885 556 25 4 1 550 613421753 613422305 0.000000e+00 830.0
13 TraesCS5D01G557400 chr4A 85.865 757 69 8 547 1299 613567640 613568362 0.000000e+00 771.0
14 TraesCS5D01G557400 chr4A 86.084 309 21 14 1367 1655 613568389 613568695 1.930000e-81 313.0
15 TraesCS5D01G557400 chr4A 91.228 171 14 1 1853 2023 613569096 613569265 5.570000e-57 231.0
16 TraesCS5D01G557400 chr4A 90.411 146 12 2 1392 1536 604827611 604827467 9.450000e-45 191.0
17 TraesCS5D01G557400 chr4A 85.393 178 17 5 1853 2023 613423713 613423888 2.640000e-40 176.0
18 TraesCS5D01G557400 chr4A 83.221 149 7 7 2017 2154 613424055 613424196 1.260000e-23 121.0
19 TraesCS5D01G557400 chr4A 85.870 92 13 0 1899 1990 613317959 613317868 5.890000e-17 99.0
20 TraesCS5D01G557400 chr4A 95.833 48 2 0 1786 1833 613423666 613423713 7.670000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G557400 chr5D 559900412 559902997 2585 False 4776.000000 4776 100.000000 1 2586 1 chr5D.!!$F1 2585
1 TraesCS5D01G557400 chr5D 556376788 556378421 1633 True 751.500000 1266 83.796000 535 2152 2 chr5D.!!$R1 1617
2 TraesCS5D01G557400 chr5B 694176543 694178579 2036 False 868.333333 1901 88.589667 1 2060 3 chr5B.!!$F1 2059
3 TraesCS5D01G557400 chr5B 694299107 694302731 3624 False 741.000000 1225 83.035000 553 2154 2 chr5B.!!$F2 1601
4 TraesCS5D01G557400 chr5B 710335921 710339176 3255 False 740.000000 985 94.300000 1057 2586 3 chr5B.!!$F3 1529
5 TraesCS5D01G557400 chr4A 613421753 613424196 2443 False 537.140000 1480 89.690200 1 2154 5 chr4A.!!$F1 2153
6 TraesCS5D01G557400 chr4A 613567640 613569265 1625 False 438.333333 771 87.725667 547 2023 3 chr4A.!!$F2 1476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 995 1.318158 ATCCAGTACCACGGACGGAC 61.318 60.0 0.0 0.0 33.05 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2351 6296 0.03601 AGTCGTGATGCCCTCTTTGG 60.036 55.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 60 1.691976 TCTTTTGCTTCCTCCACTCGA 59.308 47.619 0.00 0.00 0.00 4.04
62 68 3.580731 CTTCCTCCACTCGACTTCTTTC 58.419 50.000 0.00 0.00 0.00 2.62
181 187 7.713734 TGACTAGTGGTACATAGTAGCTTTT 57.286 36.000 0.00 0.00 44.52 2.27
258 264 8.988064 GCTATATAGCTAGCAGTCACAATTTA 57.012 34.615 24.63 0.00 45.62 1.40
259 265 9.593134 GCTATATAGCTAGCAGTCACAATTTAT 57.407 33.333 24.63 4.37 45.62 1.40
505 512 2.042433 CCTCCACCCCCAACTCAATTAA 59.958 50.000 0.00 0.00 0.00 1.40
506 513 3.356290 CTCCACCCCCAACTCAATTAAG 58.644 50.000 0.00 0.00 0.00 1.85
570 639 2.126888 GTGTTGCATCGCCAACCG 60.127 61.111 9.75 0.00 43.36 4.44
702 825 3.945285 CCAGTGTATATTCGCCACCTTTT 59.055 43.478 0.00 0.00 0.00 2.27
852 995 1.318158 ATCCAGTACCACGGACGGAC 61.318 60.000 0.00 0.00 33.05 4.79
883 1026 2.299013 TGCAAGTCAGTCCACTTCGTAT 59.701 45.455 0.00 0.00 34.17 3.06
989 1137 2.900546 ACTGACTCAAGTACCAGAAGGG 59.099 50.000 6.01 0.00 44.81 3.95
990 1138 3.165875 CTGACTCAAGTACCAGAAGGGA 58.834 50.000 0.00 0.00 41.15 4.20
991 1139 3.165875 TGACTCAAGTACCAGAAGGGAG 58.834 50.000 0.00 0.00 41.15 4.30
992 1140 2.498078 GACTCAAGTACCAGAAGGGAGG 59.502 54.545 0.00 0.00 41.15 4.30
1198 1348 2.038813 TCTGGTCTCGGCATCCCA 59.961 61.111 0.00 0.00 0.00 4.37
1241 1391 1.069204 CACCGTCATCTCCATCGGATT 59.931 52.381 9.37 0.00 44.86 3.01
1244 1394 1.069204 CGTCATCTCCATCGGATTGGT 59.931 52.381 0.00 0.00 38.01 3.67
1291 1477 3.521947 AGGTAGTAGCAACAACCGATC 57.478 47.619 1.58 0.00 37.09 3.69
1292 1478 3.097614 AGGTAGTAGCAACAACCGATCT 58.902 45.455 1.58 0.00 37.09 2.75
1293 1479 3.130693 AGGTAGTAGCAACAACCGATCTC 59.869 47.826 1.58 0.00 37.09 2.75
1294 1480 3.130693 GGTAGTAGCAACAACCGATCTCT 59.869 47.826 0.00 0.00 0.00 3.10
1295 1481 3.512033 AGTAGCAACAACCGATCTCTC 57.488 47.619 0.00 0.00 0.00 3.20
1296 1482 3.093057 AGTAGCAACAACCGATCTCTCT 58.907 45.455 0.00 0.00 0.00 3.10
1297 1483 2.376808 AGCAACAACCGATCTCTCTG 57.623 50.000 0.00 0.00 0.00 3.35
1298 1484 1.620819 AGCAACAACCGATCTCTCTGT 59.379 47.619 0.00 0.00 0.00 3.41
1299 1485 2.037772 AGCAACAACCGATCTCTCTGTT 59.962 45.455 0.00 0.00 29.93 3.16
1300 1486 2.808543 GCAACAACCGATCTCTCTGTTT 59.191 45.455 0.00 0.00 27.62 2.83
1301 1487 3.251004 GCAACAACCGATCTCTCTGTTTT 59.749 43.478 0.00 0.00 27.62 2.43
1302 1488 4.261197 GCAACAACCGATCTCTCTGTTTTT 60.261 41.667 0.00 0.00 27.62 1.94
1359 1545 1.134759 TCAGTTTTGACACCGTTCCGA 60.135 47.619 0.00 0.00 0.00 4.55
1360 1546 1.666700 CAGTTTTGACACCGTTCCGAA 59.333 47.619 0.00 0.00 0.00 4.30
1548 1752 2.039405 CAGCAGCAGGTGAGAAGGC 61.039 63.158 3.02 0.00 45.95 4.35
1566 1770 1.289066 CCGAAGTCGAGGTGCAAGA 59.711 57.895 1.43 0.00 43.02 3.02
1567 1771 0.108615 CCGAAGTCGAGGTGCAAGAT 60.109 55.000 1.43 0.00 43.02 2.40
1568 1772 1.272781 CGAAGTCGAGGTGCAAGATC 58.727 55.000 0.00 0.00 43.02 2.75
1669 2052 1.665679 ACGCAAGCGACTTATGATTGG 59.334 47.619 22.30 0.00 42.83 3.16
1695 2081 3.557577 TGATTGTGTACAAGCATGCAC 57.442 42.857 21.98 9.82 45.85 4.57
1779 3602 4.422840 TGAATGTGTCAACAAACAAGCTG 58.577 39.130 0.00 0.00 40.46 4.24
1780 3603 4.157472 TGAATGTGTCAACAAACAAGCTGA 59.843 37.500 0.00 0.00 40.46 4.26
1781 3604 4.717233 ATGTGTCAACAAACAAGCTGAA 57.283 36.364 0.00 0.00 40.46 3.02
1782 3605 3.832276 TGTGTCAACAAACAAGCTGAAC 58.168 40.909 0.00 0.00 31.82 3.18
1784 3607 4.082300 TGTGTCAACAAACAAGCTGAACAT 60.082 37.500 0.00 0.00 31.82 2.71
1949 5678 3.316868 TCTTTCGGCGAGGTTTTTGAAAT 59.683 39.130 10.46 0.00 0.00 2.17
1952 5682 1.668628 CGGCGAGGTTTTTGAAATGGG 60.669 52.381 0.00 0.00 0.00 4.00
1953 5683 1.616374 GGCGAGGTTTTTGAAATGGGA 59.384 47.619 0.00 0.00 0.00 4.37
2112 6049 7.011950 GGACATGGACGTAACATTCATATTTCA 59.988 37.037 0.00 0.00 0.00 2.69
2129 6074 1.796017 TCATACCGGCTGGGATTGTA 58.204 50.000 18.00 0.00 36.28 2.41
2209 6154 1.379044 GCACAACCTCCATCCAGGG 60.379 63.158 0.00 0.00 37.96 4.45
2235 6180 4.727677 TGGGTTAACTAATTTGGACCGTT 58.272 39.130 5.42 0.00 0.00 4.44
2298 6243 0.400594 AAAGTACCCCACAGTCTGGC 59.599 55.000 4.53 0.00 39.01 4.85
2339 6284 2.348666 CGACCGTTTTCATTGAGCTAGG 59.651 50.000 0.00 0.00 0.00 3.02
2351 6296 0.808060 GAGCTAGGAACAAGCGAGCC 60.808 60.000 0.00 0.00 44.87 4.70
2356 6301 0.890996 AGGAACAAGCGAGCCCAAAG 60.891 55.000 0.00 0.00 0.00 2.77
2389 6334 1.584483 GCACGAGCATGAAATGGCG 60.584 57.895 0.00 0.00 46.86 5.69
2390 6335 1.584483 CACGAGCATGAAATGGCGC 60.584 57.895 0.00 0.00 46.86 6.53
2391 6336 1.746615 ACGAGCATGAAATGGCGCT 60.747 52.632 7.64 0.00 46.86 5.92
2393 6338 0.657312 CGAGCATGAAATGGCGCTAA 59.343 50.000 7.64 0.00 46.86 3.09
2394 6339 1.265095 CGAGCATGAAATGGCGCTAAT 59.735 47.619 7.64 0.00 46.86 1.73
2395 6340 2.480037 CGAGCATGAAATGGCGCTAATA 59.520 45.455 7.64 0.00 46.86 0.98
2396 6341 3.125829 CGAGCATGAAATGGCGCTAATAT 59.874 43.478 7.64 0.00 46.86 1.28
2398 6343 5.458041 AGCATGAAATGGCGCTAATATTT 57.542 34.783 7.64 9.56 46.86 1.40
2399 6344 5.464168 AGCATGAAATGGCGCTAATATTTC 58.536 37.500 21.52 21.52 46.86 2.17
2402 6347 5.437289 TGAAATGGCGCTAATATTTCCTG 57.563 39.130 23.45 0.00 39.09 3.86
2403 6348 5.129634 TGAAATGGCGCTAATATTTCCTGA 58.870 37.500 23.45 12.00 39.09 3.86
2404 6349 5.592282 TGAAATGGCGCTAATATTTCCTGAA 59.408 36.000 23.45 11.78 39.09 3.02
2405 6350 6.096141 TGAAATGGCGCTAATATTTCCTGAAA 59.904 34.615 23.45 11.55 39.09 2.69
2406 6351 5.695851 ATGGCGCTAATATTTCCTGAAAG 57.304 39.130 7.64 0.00 33.32 2.62
2407 6352 3.315191 TGGCGCTAATATTTCCTGAAAGC 59.685 43.478 7.64 0.00 33.32 3.51
2408 6353 3.545633 GCGCTAATATTTCCTGAAAGCG 58.454 45.455 17.85 17.85 40.52 4.68
2409 6354 3.545633 CGCTAATATTTCCTGAAAGCGC 58.454 45.455 12.13 0.00 34.78 5.92
2410 6355 3.545633 GCTAATATTTCCTGAAAGCGCG 58.454 45.455 0.00 0.00 33.32 6.86
2412 6357 0.663153 ATATTTCCTGAAAGCGCGCC 59.337 50.000 30.33 13.83 33.32 6.53
2413 6358 0.675208 TATTTCCTGAAAGCGCGCCA 60.675 50.000 30.33 18.19 33.32 5.69
2414 6359 1.315257 ATTTCCTGAAAGCGCGCCAT 61.315 50.000 30.33 17.91 33.32 4.40
2415 6360 0.675208 TTTCCTGAAAGCGCGCCATA 60.675 50.000 30.33 11.25 0.00 2.74
2416 6361 0.675208 TTCCTGAAAGCGCGCCATAA 60.675 50.000 30.33 9.28 0.00 1.90
2417 6362 0.675208 TCCTGAAAGCGCGCCATAAA 60.675 50.000 30.33 9.32 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 68 7.010023 GCGTTCAGTAACTTCAAAACTCTATG 58.990 38.462 0.00 0.00 33.15 2.23
181 187 3.681593 AGGCAAATTAGTTGAACGGCTA 58.318 40.909 0.00 0.00 39.87 3.93
324 330 5.359756 TGAGTATCCTTGACGAAATCCATG 58.640 41.667 0.00 0.00 0.00 3.66
325 331 5.614324 TGAGTATCCTTGACGAAATCCAT 57.386 39.130 0.00 0.00 0.00 3.41
506 513 9.827411 GGAACAAACTAACAGTAAAGAATGATC 57.173 33.333 0.00 0.00 0.00 2.92
570 639 4.886489 AGCTTCTGGATGAAAAAGATAGCC 59.114 41.667 0.00 0.00 33.79 3.93
702 825 1.440618 TGGCTTTAGAAGGTGGGACA 58.559 50.000 0.00 0.00 0.00 4.02
782 905 3.804193 GTGGCCGCTAGTGCTTGC 61.804 66.667 9.68 0.00 36.97 4.01
883 1026 1.939934 CTGAAAAGTCACCTTGCGTCA 59.060 47.619 0.00 0.00 0.00 4.35
970 1118 3.165875 CTCCCTTCTGGTACTTGAGTCA 58.834 50.000 0.00 0.00 34.77 3.41
973 1121 1.208293 GCCTCCCTTCTGGTACTTGAG 59.792 57.143 0.00 0.00 34.77 3.02
989 1137 0.882042 CATACGCATCAGGTGGCCTC 60.882 60.000 3.32 0.00 0.00 4.70
990 1138 1.146930 CATACGCATCAGGTGGCCT 59.853 57.895 3.32 0.00 0.00 5.19
991 1139 0.463654 TTCATACGCATCAGGTGGCC 60.464 55.000 0.00 0.00 0.00 5.36
992 1140 1.597742 ATTCATACGCATCAGGTGGC 58.402 50.000 0.00 0.00 0.00 5.01
1113 1263 2.649190 CTGAGGGAGAAGATGACGAGA 58.351 52.381 0.00 0.00 0.00 4.04
1198 1348 4.479993 GCCGTCCTGGAGCATGCT 62.480 66.667 22.92 22.92 42.00 3.79
1300 1486 8.335356 CAACAGAGAGATCGTTTCAGTTAAAAA 58.665 33.333 5.22 0.00 0.00 1.94
1301 1487 7.494625 ACAACAGAGAGATCGTTTCAGTTAAAA 59.505 33.333 5.22 0.00 0.00 1.52
1302 1488 6.984474 ACAACAGAGAGATCGTTTCAGTTAAA 59.016 34.615 5.22 0.00 0.00 1.52
1303 1489 6.420903 CACAACAGAGAGATCGTTTCAGTTAA 59.579 38.462 5.22 0.00 0.00 2.01
1304 1490 5.920840 CACAACAGAGAGATCGTTTCAGTTA 59.079 40.000 5.22 0.00 0.00 2.24
1305 1491 4.747108 CACAACAGAGAGATCGTTTCAGTT 59.253 41.667 0.00 0.00 0.00 3.16
1306 1492 4.302455 CACAACAGAGAGATCGTTTCAGT 58.698 43.478 0.00 0.00 0.00 3.41
1307 1493 3.122613 GCACAACAGAGAGATCGTTTCAG 59.877 47.826 0.00 0.00 0.00 3.02
1308 1494 3.059884 GCACAACAGAGAGATCGTTTCA 58.940 45.455 0.00 0.00 0.00 2.69
1309 1495 3.059884 TGCACAACAGAGAGATCGTTTC 58.940 45.455 0.00 0.00 0.00 2.78
1310 1496 3.111853 TGCACAACAGAGAGATCGTTT 57.888 42.857 0.00 0.00 0.00 3.60
1311 1497 2.802816 GTTGCACAACAGAGAGATCGTT 59.197 45.455 8.61 0.00 40.84 3.85
1312 1498 2.036475 AGTTGCACAACAGAGAGATCGT 59.964 45.455 15.40 0.00 43.47 3.73
1316 1502 6.542005 TGAAAATAAGTTGCACAACAGAGAGA 59.458 34.615 15.40 0.00 43.47 3.10
1517 1703 0.954452 GCTGCTGCAGGTAAACAAGT 59.046 50.000 29.05 0.00 39.41 3.16
1519 1705 3.108292 TGCTGCTGCAGGTAAACAA 57.892 47.368 29.05 2.74 45.31 2.83
1539 1743 0.456995 CTCGACTTCGGCCTTCTCAC 60.457 60.000 0.00 0.00 40.29 3.51
1540 1744 1.595993 CCTCGACTTCGGCCTTCTCA 61.596 60.000 0.00 0.00 40.29 3.27
1541 1745 1.139947 CCTCGACTTCGGCCTTCTC 59.860 63.158 0.00 0.00 40.29 2.87
1548 1752 0.108615 ATCTTGCACCTCGACTTCGG 60.109 55.000 0.00 0.00 40.29 4.30
1566 1770 3.921021 GTCTCACGAAACTGAACATCGAT 59.079 43.478 0.00 0.00 39.73 3.59
1567 1771 3.305964 GTCTCACGAAACTGAACATCGA 58.694 45.455 1.03 0.00 39.73 3.59
1568 1772 2.408704 GGTCTCACGAAACTGAACATCG 59.591 50.000 0.00 0.00 42.05 3.84
1669 2052 4.764679 TGCTTGTACACAATCAATCCAC 57.235 40.909 0.00 0.00 35.02 4.02
1695 2081 8.532977 TTTCCTTTTCTGAAAAACTGTCAAAG 57.467 30.769 15.67 2.12 31.23 2.77
1757 2267 4.157472 TCAGCTTGTTTGTTGACACATTCA 59.843 37.500 0.00 0.00 31.06 2.57
1781 3604 8.723311 CCAAATTTCATAGCATTCAACAAATGT 58.277 29.630 0.00 0.00 45.55 2.71
1782 3605 8.178964 CCCAAATTTCATAGCATTCAACAAATG 58.821 33.333 0.00 0.00 46.37 2.32
1784 3607 7.448420 TCCCAAATTTCATAGCATTCAACAAA 58.552 30.769 0.00 0.00 0.00 2.83
2096 6033 7.298122 CAGCCGGTATGAAATATGAATGTTAC 58.702 38.462 1.90 0.00 0.00 2.50
2112 6049 2.708861 TCATTACAATCCCAGCCGGTAT 59.291 45.455 1.90 0.00 0.00 2.73
2129 6074 6.064717 GGACCTAATTAATCCTGCACTCATT 58.935 40.000 7.81 0.00 0.00 2.57
2209 6154 4.398358 GGTCCAAATTAGTTAACCCAGAGC 59.602 45.833 0.88 0.00 0.00 4.09
2224 6169 2.556622 CAGCTAACCAAACGGTCCAAAT 59.443 45.455 0.00 0.00 34.92 2.32
2235 6180 1.225376 CCGAACGTGCAGCTAACCAA 61.225 55.000 0.00 0.00 0.00 3.67
2271 6216 1.270625 TGTGGGGTACTTTGAGAAGCG 60.271 52.381 0.00 0.00 36.29 4.68
2298 6243 2.597305 CGATTCGGTCGTTCCTTTACAG 59.403 50.000 0.00 0.00 45.19 2.74
2319 6264 3.596214 TCCTAGCTCAATGAAAACGGTC 58.404 45.455 0.00 0.00 0.00 4.79
2327 6272 2.233676 TCGCTTGTTCCTAGCTCAATGA 59.766 45.455 0.00 0.00 36.49 2.57
2339 6284 0.519077 CTCTTTGGGCTCGCTTGTTC 59.481 55.000 0.00 0.00 0.00 3.18
2351 6296 0.036010 AGTCGTGATGCCCTCTTTGG 60.036 55.000 0.00 0.00 0.00 3.28
2356 6301 2.103042 GTGCAGTCGTGATGCCCTC 61.103 63.158 0.00 0.00 43.18 4.30
2386 6331 3.607078 CGCTTTCAGGAAATATTAGCGCC 60.607 47.826 12.13 2.06 34.78 6.53
2387 6332 3.545633 CGCTTTCAGGAAATATTAGCGC 58.454 45.455 12.13 0.00 34.78 5.92
2389 6334 3.545633 CGCGCTTTCAGGAAATATTAGC 58.454 45.455 5.56 0.00 0.00 3.09
2390 6335 3.545633 GCGCGCTTTCAGGAAATATTAG 58.454 45.455 26.67 0.00 0.00 1.73
2391 6336 2.289547 GGCGCGCTTTCAGGAAATATTA 59.710 45.455 32.29 0.00 0.00 0.98
2393 6338 0.663153 GGCGCGCTTTCAGGAAATAT 59.337 50.000 32.29 0.00 0.00 1.28
2394 6339 0.675208 TGGCGCGCTTTCAGGAAATA 60.675 50.000 32.29 0.14 0.00 1.40
2395 6340 1.315257 ATGGCGCGCTTTCAGGAAAT 61.315 50.000 32.29 7.87 0.00 2.17
2396 6341 0.675208 TATGGCGCGCTTTCAGGAAA 60.675 50.000 32.29 5.08 0.00 3.13
2398 6343 0.675208 TTTATGGCGCGCTTTCAGGA 60.675 50.000 32.29 9.91 0.00 3.86
2399 6344 0.170116 TTTTATGGCGCGCTTTCAGG 59.830 50.000 32.29 0.00 0.00 3.86
2402 6347 2.475200 AGATTTTATGGCGCGCTTTC 57.525 45.000 32.29 15.45 0.00 2.62
2403 6348 2.939460 AAGATTTTATGGCGCGCTTT 57.061 40.000 32.29 20.52 0.00 3.51
2404 6349 2.923020 CAAAAGATTTTATGGCGCGCTT 59.077 40.909 32.29 20.90 0.00 4.68
2405 6350 2.163412 TCAAAAGATTTTATGGCGCGCT 59.837 40.909 32.29 15.35 0.00 5.92
2406 6351 2.525055 TCAAAAGATTTTATGGCGCGC 58.475 42.857 25.94 25.94 0.00 6.86
2407 6352 4.548726 GCATTCAAAAGATTTTATGGCGCG 60.549 41.667 0.00 0.00 0.00 6.86
2408 6353 4.329528 TGCATTCAAAAGATTTTATGGCGC 59.670 37.500 0.00 0.00 0.00 6.53
2409 6354 6.415702 CATGCATTCAAAAGATTTTATGGCG 58.584 36.000 0.00 0.00 0.00 5.69
2410 6355 6.316890 ACCATGCATTCAAAAGATTTTATGGC 59.683 34.615 0.00 6.00 34.48 4.40
2414 6359 9.770097 TGTTTACCATGCATTCAAAAGATTTTA 57.230 25.926 0.00 0.00 0.00 1.52
2415 6360 8.674263 TGTTTACCATGCATTCAAAAGATTTT 57.326 26.923 0.00 0.00 0.00 1.82
2416 6361 8.851541 ATGTTTACCATGCATTCAAAAGATTT 57.148 26.923 0.00 0.00 30.69 2.17
2417 6362 8.851541 AATGTTTACCATGCATTCAAAAGATT 57.148 26.923 0.00 5.34 32.82 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.