Multiple sequence alignment - TraesCS5D01G555400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G555400 chr5D 100.000 7837 0 0 1 7837 558980194 558972358 0.000000e+00 14473.0
1 TraesCS5D01G555400 chr5D 87.952 830 60 20 1 801 46710537 46711355 0.000000e+00 942.0
2 TraesCS5D01G555400 chr5D 88.487 304 16 8 513 801 559014556 559014855 4.500000e-92 350.0
3 TraesCS5D01G555400 chr5D 91.099 191 12 3 4769 4958 403752341 403752527 3.630000e-63 254.0
4 TraesCS5D01G555400 chr5D 90.576 191 13 3 4769 4958 78435218 78435404 1.690000e-61 248.0
5 TraesCS5D01G555400 chr5D 98.148 54 1 0 3310 3363 237600327 237600274 2.330000e-15 95.3
6 TraesCS5D01G555400 chr4A 89.510 1573 73 35 5260 6776 612080599 612079063 0.000000e+00 1906.0
7 TraesCS5D01G555400 chr4A 87.508 1481 83 40 3818 5262 612082064 612080650 0.000000e+00 1616.0
8 TraesCS5D01G555400 chr4A 90.156 833 33 18 1 801 632976549 632977364 0.000000e+00 1038.0
9 TraesCS5D01G555400 chr4A 89.651 831 50 10 1 799 3190390 3191216 0.000000e+00 1026.0
10 TraesCS5D01G555400 chr4A 89.425 539 33 17 7314 7837 612078453 612077924 0.000000e+00 658.0
11 TraesCS5D01G555400 chr4A 92.714 398 20 1 5512 5909 106913495 106913883 4.100000e-157 566.0
12 TraesCS5D01G555400 chr4A 91.117 394 24 8 7134 7524 106914113 106914498 2.510000e-144 523.0
13 TraesCS5D01G555400 chr4A 86.444 450 25 15 3363 3809 612082458 612082042 1.990000e-125 460.0
14 TraesCS5D01G555400 chr4A 82.222 450 27 29 1011 1437 612084726 612084307 9.740000e-89 339.0
15 TraesCS5D01G555400 chr4A 83.453 278 23 15 6804 7069 561993792 561993526 3.660000e-58 237.0
16 TraesCS5D01G555400 chr4A 84.462 251 20 12 2875 3110 612083121 612082875 6.120000e-56 230.0
17 TraesCS5D01G555400 chr4A 85.294 238 11 12 1925 2147 612083945 612083717 2.850000e-54 224.0
18 TraesCS5D01G555400 chr4A 91.275 149 8 1 3163 3306 612082638 612082490 1.720000e-46 198.0
19 TraesCS5D01G555400 chr4A 89.474 152 10 3 7134 7285 612078598 612078453 3.730000e-43 187.0
20 TraesCS5D01G555400 chr4A 84.314 204 12 8 2681 2875 612083343 612083151 1.740000e-41 182.0
21 TraesCS5D01G555400 chr4A 93.939 66 1 3 3308 3372 735363915 735363852 6.470000e-16 97.1
22 TraesCS5D01G555400 chr4A 98.182 55 0 1 3111 3165 612082851 612082798 2.330000e-15 95.3
23 TraesCS5D01G555400 chr5B 88.415 1571 68 45 5260 6776 693186320 693184810 0.000000e+00 1788.0
24 TraesCS5D01G555400 chr5B 87.490 1199 55 32 3818 4947 693187810 693186638 0.000000e+00 1295.0
25 TraesCS5D01G555400 chr5B 88.732 710 54 15 7140 7837 693184364 693183669 0.000000e+00 845.0
26 TraesCS5D01G555400 chr5B 90.353 425 27 8 1008 1427 693190740 693190325 5.350000e-151 545.0
27 TraesCS5D01G555400 chr5B 86.543 431 20 15 1928 2334 693189874 693189458 2.600000e-119 440.0
28 TraesCS5D01G555400 chr5B 87.580 314 21 11 3498 3809 693188085 693187788 1.620000e-91 348.0
29 TraesCS5D01G555400 chr5B 88.927 289 11 6 4976 5263 693186639 693186371 3.500000e-88 337.0
30 TraesCS5D01G555400 chr5B 83.571 280 21 19 6804 7069 76672874 76673142 1.020000e-58 239.0
31 TraesCS5D01G555400 chr5B 85.782 211 22 5 1450 1657 693190190 693189985 4.760000e-52 217.0
32 TraesCS5D01G555400 chr5B 79.636 275 26 17 2895 3158 693188735 693188480 3.760000e-38 171.0
33 TraesCS5D01G555400 chr5B 91.379 116 2 2 803 910 693190968 693190853 1.360000e-32 152.0
34 TraesCS5D01G555400 chr5B 98.246 57 0 1 3310 3366 696154581 696154636 1.800000e-16 99.0
35 TraesCS5D01G555400 chr5B 88.000 75 5 4 3310 3384 473194783 473194853 1.400000e-12 86.1
36 TraesCS5D01G555400 chr3D 85.152 1347 82 48 6573 7837 467321944 467320634 0.000000e+00 1271.0
37 TraesCS5D01G555400 chr3D 94.090 643 19 7 5512 6148 467322977 467322348 0.000000e+00 959.0
38 TraesCS5D01G555400 chr3D 84.859 568 45 27 4712 5262 537239989 537239446 1.160000e-147 534.0
39 TraesCS5D01G555400 chr3D 88.972 399 18 13 6197 6582 467322354 467321969 3.310000e-128 470.0
40 TraesCS5D01G555400 chr3D 98.148 54 1 0 3310 3363 230765703 230765756 2.330000e-15 95.3
41 TraesCS5D01G555400 chr7D 91.236 833 36 17 1 801 163630776 163629949 0.000000e+00 1099.0
42 TraesCS5D01G555400 chr7D 89.847 847 34 14 3 801 536606266 536607108 0.000000e+00 1040.0
43 TraesCS5D01G555400 chr7D 85.866 566 37 20 4712 5261 318730700 318730162 5.310000e-156 562.0
44 TraesCS5D01G555400 chr7D 83.135 504 53 19 324 799 164179292 164179791 1.560000e-116 431.0
45 TraesCS5D01G555400 chr7D 88.562 306 20 6 513 803 68450246 68449941 2.690000e-94 357.0
46 TraesCS5D01G555400 chr7D 89.691 194 15 3 4769 4961 567810263 567810074 7.860000e-60 243.0
47 TraesCS5D01G555400 chr5A 90.996 833 37 18 1 801 379280152 379279326 0.000000e+00 1088.0
48 TraesCS5D01G555400 chr5A 90.036 833 47 14 1 801 341896785 341897613 0.000000e+00 1046.0
49 TraesCS5D01G555400 chr2D 89.965 847 38 18 1 801 651006268 651005423 0.000000e+00 1050.0
50 TraesCS5D01G555400 chr2D 95.607 478 19 2 1 478 324340935 324340460 0.000000e+00 765.0
51 TraesCS5D01G555400 chr2D 81.871 855 71 40 1 801 532014858 532015682 1.840000e-180 643.0
52 TraesCS5D01G555400 chr2D 87.449 494 43 10 324 801 170409532 170409042 1.150000e-152 551.0
53 TraesCS5D01G555400 chr2D 91.419 303 9 9 513 801 512096986 512097285 4.410000e-107 399.0
54 TraesCS5D01G555400 chr2D 88.356 292 25 6 282 569 10795657 10795371 7.530000e-90 342.0
55 TraesCS5D01G555400 chr2D 88.827 179 9 4 634 801 187078304 187078482 7.970000e-50 209.0
56 TraesCS5D01G555400 chr1D 89.277 830 51 22 1 802 223466730 223467549 0.000000e+00 1005.0
57 TraesCS5D01G555400 chr1D 100.000 52 0 0 3310 3361 194327020 194326969 6.470000e-16 97.1
58 TraesCS5D01G555400 chr1D 93.651 63 4 0 3310 3372 321264201 321264139 2.330000e-15 95.3
59 TraesCS5D01G555400 chr1D 100.000 50 0 0 3310 3359 379137564 379137613 8.370000e-15 93.5
60 TraesCS5D01G555400 chr6D 89.273 839 39 17 1 801 43513227 43512402 0.000000e+00 1003.0
61 TraesCS5D01G555400 chr6D 83.794 506 50 18 324 801 178836718 178836217 1.200000e-122 451.0
62 TraesCS5D01G555400 chr6D 88.449 303 20 7 513 801 43532781 43533082 1.250000e-92 351.0
63 TraesCS5D01G555400 chr6D 89.764 127 13 0 6416 6542 347681488 347681614 6.290000e-36 163.0
64 TraesCS5D01G555400 chr6D 98.148 54 0 1 3310 3363 73071670 73071618 8.370000e-15 93.5
65 TraesCS5D01G555400 chr6D 98.077 52 1 0 3310 3361 132306920 132306869 3.010000e-14 91.6
66 TraesCS5D01G555400 chr6D 98.077 52 1 0 3310 3361 238958110 238958059 3.010000e-14 91.6
67 TraesCS5D01G555400 chr6D 100.000 49 0 0 3310 3358 382979437 382979485 3.010000e-14 91.6
68 TraesCS5D01G555400 chr6D 100.000 49 0 0 3310 3358 387627829 387627781 3.010000e-14 91.6
69 TraesCS5D01G555400 chr6D 96.296 54 2 0 3310 3363 67156476 67156423 1.080000e-13 89.8
70 TraesCS5D01G555400 chr6D 96.296 54 2 0 3310 3363 467050510 467050563 1.080000e-13 89.8
71 TraesCS5D01G555400 chr1A 90.641 780 38 14 1 748 167138904 167138128 0.000000e+00 1003.0
72 TraesCS5D01G555400 chr1A 84.727 275 19 15 6804 7069 122158607 122158867 3.630000e-63 254.0
73 TraesCS5D01G555400 chr1A 100.000 50 0 0 3310 3359 119717355 119717404 8.370000e-15 93.5
74 TraesCS5D01G555400 chr1A 100.000 50 0 0 3310 3359 168552665 168552714 8.370000e-15 93.5
75 TraesCS5D01G555400 chr1A 96.429 56 0 2 3310 3363 387511403 387511348 3.010000e-14 91.6
76 TraesCS5D01G555400 chr1A 96.364 55 2 0 3310 3364 534535144 534535198 3.010000e-14 91.6
77 TraesCS5D01G555400 chr1A 93.443 61 2 2 3310 3369 112821926 112821867 1.080000e-13 89.8
78 TraesCS5D01G555400 chr1A 92.063 63 3 2 3308 3370 485361304 485361244 3.900000e-13 87.9
79 TraesCS5D01G555400 chr6B 85.356 997 63 34 5260 6222 60120417 60121364 0.000000e+00 955.0
80 TraesCS5D01G555400 chr6B 83.811 488 52 20 4779 5253 60119875 60120348 9.340000e-119 438.0
81 TraesCS5D01G555400 chr6B 81.681 595 36 29 4713 5262 643029266 643029832 2.020000e-115 427.0
82 TraesCS5D01G555400 chr6B 83.871 279 21 18 6804 7069 663040810 663040543 2.180000e-60 244.0
83 TraesCS5D01G555400 chr6B 82.986 288 14 19 6804 7069 673068551 673068825 2.200000e-55 228.0
84 TraesCS5D01G555400 chr6B 88.976 127 14 0 6416 6542 532344312 532344186 2.930000e-34 158.0
85 TraesCS5D01G555400 chr3A 84.067 841 76 34 3 801 540693956 540694780 0.000000e+00 758.0
86 TraesCS5D01G555400 chr3A 78.745 494 71 22 327 801 391413215 391412737 4.600000e-77 300.0
87 TraesCS5D01G555400 chr3A 83.513 279 19 18 6804 7069 24624506 24624770 1.310000e-57 235.0
88 TraesCS5D01G555400 chr3A 94.400 125 3 2 6804 6928 276261207 276261327 1.040000e-43 189.0
89 TraesCS5D01G555400 chr2B 84.664 639 63 18 190 801 493659846 493659216 8.700000e-169 604.0
90 TraesCS5D01G555400 chr2B 82.906 702 74 29 1 659 719461910 719462608 2.440000e-164 590.0
91 TraesCS5D01G555400 chr2B 88.077 260 14 4 4712 4958 460322713 460322968 7.690000e-75 292.0
92 TraesCS5D01G555400 chr2B 82.578 287 15 18 6804 7069 3366214 3366486 3.680000e-53 220.0
93 TraesCS5D01G555400 chr2B 89.474 76 4 4 3310 3382 462893167 462893241 8.370000e-15 93.5
94 TraesCS5D01G555400 chr6A 80.380 841 104 43 1 801 103253635 103252816 4.080000e-162 582.0
95 TraesCS5D01G555400 chr6A 82.310 277 23 17 6806 7069 397282602 397282339 4.760000e-52 217.0
96 TraesCS5D01G555400 chr6A 88.976 127 14 0 6416 6542 495692976 495692850 2.930000e-34 158.0
97 TraesCS5D01G555400 chr6A 100.000 52 0 0 3310 3361 435327093 435327144 6.470000e-16 97.1
98 TraesCS5D01G555400 chr6A 100.000 51 0 0 3310 3360 157967196 157967146 2.330000e-15 95.3
99 TraesCS5D01G555400 chr6A 100.000 51 0 0 3310 3360 607450306 607450256 2.330000e-15 95.3
100 TraesCS5D01G555400 chr6A 96.429 56 2 0 3310 3365 106923494 106923439 8.370000e-15 93.5
101 TraesCS5D01G555400 chr6A 94.915 59 2 1 3311 3368 422165641 422165699 3.010000e-14 91.6
102 TraesCS5D01G555400 chr6A 94.915 59 2 1 3310 3368 600745478 600745421 3.010000e-14 91.6
103 TraesCS5D01G555400 chr6A 96.226 53 2 0 6614 6666 166115363 166115415 3.900000e-13 87.9
104 TraesCS5D01G555400 chr3B 84.683 568 41 20 4712 5262 602799270 602799808 6.970000e-145 525.0
105 TraesCS5D01G555400 chr3B 87.500 80 5 5 3310 3388 526281059 526280984 3.900000e-13 87.9
106 TraesCS5D01G555400 chr7B 84.480 567 45 20 4712 5262 54836294 54835755 3.240000e-143 520.0
107 TraesCS5D01G555400 chr7B 84.819 415 21 17 4712 5111 683259204 683258817 5.740000e-101 379.0
108 TraesCS5D01G555400 chr7B 82.105 285 21 18 6804 7069 5450 5177 4.760000e-52 217.0
109 TraesCS5D01G555400 chr7B 100.000 53 0 0 3310 3362 548384295 548384243 1.800000e-16 99.0
110 TraesCS5D01G555400 chr7B 98.214 56 0 1 3310 3365 513956200 513956254 6.470000e-16 97.1
111 TraesCS5D01G555400 chr7B 94.915 59 2 1 3308 3366 741797935 741797992 3.010000e-14 91.6
112 TraesCS5D01G555400 chr7B 94.915 59 2 1 3308 3366 741817436 741817493 3.010000e-14 91.6
113 TraesCS5D01G555400 chr7B 92.308 65 2 2 3310 3373 447705546 447705484 1.080000e-13 89.8
114 TraesCS5D01G555400 chrUn 90.052 191 14 3 4769 4958 114922991 114923177 7.860000e-60 243.0
115 TraesCS5D01G555400 chrUn 100.000 49 0 0 3310 3358 37054928 37054976 3.010000e-14 91.6
116 TraesCS5D01G555400 chrUn 100.000 49 0 0 3310 3358 77508764 77508812 3.010000e-14 91.6
117 TraesCS5D01G555400 chrUn 98.039 51 1 0 3309 3359 323910796 323910746 1.080000e-13 89.8
118 TraesCS5D01G555400 chrUn 98.039 51 1 0 3309 3359 323913971 323913921 1.080000e-13 89.8
119 TraesCS5D01G555400 chrUn 98.039 51 1 0 3309 3359 391739834 391739884 1.080000e-13 89.8
120 TraesCS5D01G555400 chrUn 98.000 50 1 0 3310 3359 143995282 143995331 3.900000e-13 87.9
121 TraesCS5D01G555400 chrUn 98.000 50 1 0 3310 3359 355880543 355880494 3.900000e-13 87.9
122 TraesCS5D01G555400 chrUn 97.959 49 1 0 3310 3358 40943182 40943134 1.400000e-12 86.1
123 TraesCS5D01G555400 chrUn 97.959 49 1 0 3310 3358 260324686 260324734 1.400000e-12 86.1
124 TraesCS5D01G555400 chrUn 92.982 57 3 1 3310 3366 35885845 35885790 1.810000e-11 82.4
125 TraesCS5D01G555400 chrUn 94.444 54 2 1 3310 3363 480648038 480647986 1.810000e-11 82.4
126 TraesCS5D01G555400 chrUn 95.918 49 2 0 3311 3359 231397129 231397177 6.520000e-11 80.5
127 TraesCS5D01G555400 chr4B 83.630 281 21 18 6804 7069 639058463 639058733 2.830000e-59 241.0
128 TraesCS5D01G555400 chr4B 95.200 125 2 2 6804 6928 196401232 196401112 2.230000e-45 195.0
129 TraesCS5D01G555400 chr4B 100.000 52 0 0 3310 3361 628505218 628505269 6.470000e-16 97.1
130 TraesCS5D01G555400 chr4B 96.491 57 1 1 3310 3365 364348613 364348669 8.370000e-15 93.5
131 TraesCS5D01G555400 chr4B 96.491 57 0 2 3310 3366 393352610 393352556 8.370000e-15 93.5
132 TraesCS5D01G555400 chr7A 83.513 279 20 18 6804 7069 586244932 586245197 3.660000e-58 237.0
133 TraesCS5D01G555400 chr7A 100.000 53 0 0 3310 3362 567014784 567014836 1.800000e-16 99.0
134 TraesCS5D01G555400 chr2A 94.355 124 2 4 6804 6927 68925047 68925165 1.340000e-42 185.0
135 TraesCS5D01G555400 chr2A 96.610 59 0 2 3310 3368 131711067 131711123 6.470000e-16 97.1
136 TraesCS5D01G555400 chr1B 100.000 52 0 0 3310 3361 250409486 250409435 6.470000e-16 97.1
137 TraesCS5D01G555400 chr1B 96.491 57 2 0 3310 3366 656845174 656845230 2.330000e-15 95.3
138 TraesCS5D01G555400 chr4D 100.000 50 0 0 3310 3359 127149760 127149711 8.370000e-15 93.5
139 TraesCS5D01G555400 chr4D 98.077 52 1 0 3310 3361 116286735 116286786 3.010000e-14 91.6
140 TraesCS5D01G555400 chr4D 96.364 55 2 0 3310 3364 394397200 394397146 3.010000e-14 91.6
141 TraesCS5D01G555400 chr4D 98.113 53 0 1 3310 3362 420504278 420504329 3.010000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G555400 chr5D 558972358 558980194 7836 True 14473.000000 14473 100.000000 1 7837 1 chr5D.!!$R2 7836
1 TraesCS5D01G555400 chr5D 46710537 46711355 818 False 942.000000 942 87.952000 1 801 1 chr5D.!!$F1 800
2 TraesCS5D01G555400 chr4A 632976549 632977364 815 False 1038.000000 1038 90.156000 1 801 1 chr4A.!!$F2 800
3 TraesCS5D01G555400 chr4A 3190390 3191216 826 False 1026.000000 1026 89.651000 1 799 1 chr4A.!!$F1 798
4 TraesCS5D01G555400 chr4A 612077924 612084726 6802 True 554.118182 1906 88.010000 1011 7837 11 chr4A.!!$R3 6826
5 TraesCS5D01G555400 chr4A 106913495 106914498 1003 False 544.500000 566 91.915500 5512 7524 2 chr4A.!!$F3 2012
6 TraesCS5D01G555400 chr5B 693183669 693190968 7299 True 613.800000 1788 87.483700 803 7837 10 chr5B.!!$R1 7034
7 TraesCS5D01G555400 chr3D 467320634 467322977 2343 True 900.000000 1271 89.404667 5512 7837 3 chr3D.!!$R2 2325
8 TraesCS5D01G555400 chr3D 537239446 537239989 543 True 534.000000 534 84.859000 4712 5262 1 chr3D.!!$R1 550
9 TraesCS5D01G555400 chr7D 163629949 163630776 827 True 1099.000000 1099 91.236000 1 801 1 chr7D.!!$R2 800
10 TraesCS5D01G555400 chr7D 536606266 536607108 842 False 1040.000000 1040 89.847000 3 801 1 chr7D.!!$F2 798
11 TraesCS5D01G555400 chr7D 318730162 318730700 538 True 562.000000 562 85.866000 4712 5261 1 chr7D.!!$R3 549
12 TraesCS5D01G555400 chr5A 379279326 379280152 826 True 1088.000000 1088 90.996000 1 801 1 chr5A.!!$R1 800
13 TraesCS5D01G555400 chr5A 341896785 341897613 828 False 1046.000000 1046 90.036000 1 801 1 chr5A.!!$F1 800
14 TraesCS5D01G555400 chr2D 651005423 651006268 845 True 1050.000000 1050 89.965000 1 801 1 chr2D.!!$R4 800
15 TraesCS5D01G555400 chr2D 532014858 532015682 824 False 643.000000 643 81.871000 1 801 1 chr2D.!!$F3 800
16 TraesCS5D01G555400 chr1D 223466730 223467549 819 False 1005.000000 1005 89.277000 1 802 1 chr1D.!!$F1 801
17 TraesCS5D01G555400 chr6D 43512402 43513227 825 True 1003.000000 1003 89.273000 1 801 1 chr6D.!!$R1 800
18 TraesCS5D01G555400 chr6D 178836217 178836718 501 True 451.000000 451 83.794000 324 801 1 chr6D.!!$R5 477
19 TraesCS5D01G555400 chr1A 167138128 167138904 776 True 1003.000000 1003 90.641000 1 748 1 chr1A.!!$R2 747
20 TraesCS5D01G555400 chr6B 60119875 60121364 1489 False 696.500000 955 84.583500 4779 6222 2 chr6B.!!$F3 1443
21 TraesCS5D01G555400 chr6B 643029266 643029832 566 False 427.000000 427 81.681000 4713 5262 1 chr6B.!!$F1 549
22 TraesCS5D01G555400 chr3A 540693956 540694780 824 False 758.000000 758 84.067000 3 801 1 chr3A.!!$F3 798
23 TraesCS5D01G555400 chr2B 493659216 493659846 630 True 604.000000 604 84.664000 190 801 1 chr2B.!!$R1 611
24 TraesCS5D01G555400 chr2B 719461910 719462608 698 False 590.000000 590 82.906000 1 659 1 chr2B.!!$F4 658
25 TraesCS5D01G555400 chr6A 103252816 103253635 819 True 582.000000 582 80.380000 1 801 1 chr6A.!!$R1 800
26 TraesCS5D01G555400 chr3B 602799270 602799808 538 False 525.000000 525 84.683000 4712 5262 1 chr3B.!!$F1 550
27 TraesCS5D01G555400 chr7B 54835755 54836294 539 True 520.000000 520 84.480000 4712 5262 1 chr7B.!!$R2 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1127 0.320247 AGTGGACGCTCAAAGCAGAG 60.320 55.0 0.00 0.0 42.58 3.35 F
1490 1879 0.039798 GCCGGTAAGATGCATGCATG 60.040 55.0 36.73 22.7 36.70 4.06 F
2392 2890 0.036952 CGGTCCTGCCTATGCCTATG 60.037 60.0 0.00 0.0 36.33 2.23 F
3460 4534 0.034670 AGGTGAATCCAAGCTCTGGC 60.035 55.0 9.35 0.0 45.98 4.85 F
3926 5056 0.934496 CAACTTCAAACCGTCTCGCA 59.066 50.0 0.00 0.0 0.00 5.10 F
4805 6015 1.710816 CTGGCCCTAGCTAGCTAGTT 58.289 55.0 37.50 18.3 41.04 2.24 F
6708 8183 0.867753 CACGCGCAGTACCTCTGATC 60.868 60.0 5.73 0.0 46.27 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2367 0.111061 TGCATGTTGGCTTGAGACCT 59.889 50.0 0.00 0.00 34.04 3.85 R
3340 4326 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 R
3909 5038 0.179094 TGTGCGAGACGGTTTGAAGT 60.179 50.0 0.00 0.00 0.00 3.01 R
4539 5716 0.038166 TTGAAGATCCCCACACAGCC 59.962 55.0 0.00 0.00 0.00 4.85 R
5055 6314 1.093159 CCTCTGCTTTGACCTCATGC 58.907 55.0 0.00 0.00 0.00 4.06 R
6777 8255 0.397941 CAGCACCACAAGGAGAGGAA 59.602 55.0 0.00 0.00 38.69 3.36 R
7676 9352 0.461961 GCATTCTGTCTCCCTACGCT 59.538 55.0 0.00 0.00 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 94 8.205131 ACAAATAAACTAAAGTATGCCTACCG 57.795 34.615 0.00 0.00 0.00 4.02
780 984 2.739913 TGTGATTTGATTTCGTCCCGAC 59.260 45.455 0.00 0.00 34.89 4.79
842 1048 2.722094 CTGGCCACCAGCACTATTAAA 58.278 47.619 0.00 0.00 45.13 1.52
843 1049 2.684881 CTGGCCACCAGCACTATTAAAG 59.315 50.000 0.00 0.00 45.13 1.85
844 1050 2.041081 TGGCCACCAGCACTATTAAAGT 59.959 45.455 0.00 0.00 46.50 2.66
846 1052 3.877508 GGCCACCAGCACTATTAAAGTAG 59.122 47.826 0.00 0.00 46.50 2.57
847 1053 4.383770 GGCCACCAGCACTATTAAAGTAGA 60.384 45.833 0.00 0.00 46.50 2.59
848 1054 4.571176 GCCACCAGCACTATTAAAGTAGAC 59.429 45.833 0.00 0.00 42.97 2.59
850 1056 5.581085 CCACCAGCACTATTAAAGTAGACAC 59.419 44.000 0.00 0.00 35.76 3.67
851 1057 6.398918 CACCAGCACTATTAAAGTAGACACT 58.601 40.000 0.00 0.00 35.76 3.55
870 1080 1.589196 GGTAGCTTAGCCGCGTCTG 60.589 63.158 4.92 0.00 34.40 3.51
910 1124 0.601046 CTCAGTGGACGCTCAAAGCA 60.601 55.000 0.00 0.00 42.58 3.91
911 1125 0.601046 TCAGTGGACGCTCAAAGCAG 60.601 55.000 0.00 0.00 42.58 4.24
912 1126 0.601046 CAGTGGACGCTCAAAGCAGA 60.601 55.000 0.00 0.00 42.58 4.26
913 1127 0.320247 AGTGGACGCTCAAAGCAGAG 60.320 55.000 0.00 0.00 42.58 3.35
926 1177 2.508887 CAGAGAGCAGAGCACGCC 60.509 66.667 0.00 0.00 0.00 5.68
927 1178 2.993840 AGAGAGCAGAGCACGCCA 60.994 61.111 0.00 0.00 0.00 5.69
928 1179 2.186384 GAGAGCAGAGCACGCCAT 59.814 61.111 0.00 0.00 0.00 4.40
931 1182 3.382803 GAGCAGAGCACGCCATCCT 62.383 63.158 0.00 0.00 0.00 3.24
932 1183 2.021068 GAGCAGAGCACGCCATCCTA 62.021 60.000 0.00 0.00 0.00 2.94
937 1188 0.530870 GAGCACGCCATCCTACCTTC 60.531 60.000 0.00 0.00 0.00 3.46
939 1190 0.530870 GCACGCCATCCTACCTTCTC 60.531 60.000 0.00 0.00 0.00 2.87
954 1205 3.517500 ACCTTCTCTCCTTTCCTTGCTAG 59.482 47.826 0.00 0.00 0.00 3.42
955 1206 3.772025 CCTTCTCTCCTTTCCTTGCTAGA 59.228 47.826 0.00 0.00 0.00 2.43
957 1208 4.054359 TCTCTCCTTTCCTTGCTAGAGT 57.946 45.455 0.00 0.00 33.72 3.24
958 1209 5.194473 TCTCTCCTTTCCTTGCTAGAGTA 57.806 43.478 0.00 0.00 33.72 2.59
959 1210 5.197451 TCTCTCCTTTCCTTGCTAGAGTAG 58.803 45.833 0.00 0.00 33.72 2.57
960 1211 5.044772 TCTCTCCTTTCCTTGCTAGAGTAGA 60.045 44.000 0.00 0.00 33.72 2.59
961 1212 5.197451 TCTCCTTTCCTTGCTAGAGTAGAG 58.803 45.833 0.00 0.00 0.00 2.43
962 1213 4.936802 TCCTTTCCTTGCTAGAGTAGAGT 58.063 43.478 0.00 0.00 0.00 3.24
963 1214 4.707448 TCCTTTCCTTGCTAGAGTAGAGTG 59.293 45.833 0.00 0.00 0.00 3.51
965 1216 5.163561 CCTTTCCTTGCTAGAGTAGAGTGAG 60.164 48.000 0.00 0.00 0.00 3.51
966 1217 3.283751 TCCTTGCTAGAGTAGAGTGAGC 58.716 50.000 0.00 0.00 0.00 4.26
967 1218 3.020274 CCTTGCTAGAGTAGAGTGAGCA 58.980 50.000 0.00 0.00 41.23 4.26
968 1219 3.636300 CCTTGCTAGAGTAGAGTGAGCAT 59.364 47.826 0.00 0.00 42.39 3.79
969 1220 4.824537 CCTTGCTAGAGTAGAGTGAGCATA 59.175 45.833 0.00 0.00 42.39 3.14
970 1221 5.476599 CCTTGCTAGAGTAGAGTGAGCATAT 59.523 44.000 0.00 0.00 42.39 1.78
971 1222 6.657117 CCTTGCTAGAGTAGAGTGAGCATATA 59.343 42.308 0.00 0.00 42.39 0.86
972 1223 7.339212 CCTTGCTAGAGTAGAGTGAGCATATAT 59.661 40.741 0.00 0.00 42.39 0.86
973 1224 9.389755 CTTGCTAGAGTAGAGTGAGCATATATA 57.610 37.037 0.00 0.00 42.39 0.86
982 1233 7.959689 AGAGTGAGCATATATAAAAGTGCAG 57.040 36.000 8.38 0.00 39.94 4.41
996 1247 2.433145 GCAGCACTGCGCAGTAGA 60.433 61.111 40.17 2.85 45.23 2.59
997 1248 2.451167 GCAGCACTGCGCAGTAGAG 61.451 63.158 40.17 30.35 45.23 2.43
998 1249 1.080230 CAGCACTGCGCAGTAGAGT 60.080 57.895 40.17 22.53 45.23 3.24
999 1250 0.171231 CAGCACTGCGCAGTAGAGTA 59.829 55.000 40.17 0.18 45.23 2.59
1000 1251 0.171455 AGCACTGCGCAGTAGAGTAC 59.829 55.000 40.17 24.12 45.23 2.73
1001 1252 0.171455 GCACTGCGCAGTAGAGTACT 59.829 55.000 40.17 15.07 45.23 2.73
1002 1253 1.795889 GCACTGCGCAGTAGAGTACTC 60.796 57.143 40.17 15.41 45.23 2.59
1003 1254 1.096416 ACTGCGCAGTAGAGTACTCC 58.904 55.000 40.15 5.15 45.23 3.85
1004 1255 1.095600 CTGCGCAGTAGAGTACTCCA 58.904 55.000 29.24 2.51 45.23 3.86
1005 1256 0.809385 TGCGCAGTAGAGTACTCCAC 59.191 55.000 19.38 16.03 36.76 4.02
1006 1257 1.096416 GCGCAGTAGAGTACTCCACT 58.904 55.000 17.03 17.03 41.47 4.00
1137 1407 1.301916 GGGGTGTGGGGGTAGTATTT 58.698 55.000 0.00 0.00 0.00 1.40
1147 1417 4.124970 GGGGGTAGTATTTGAAAGTAGCG 58.875 47.826 0.00 0.00 0.00 4.26
1189 1459 0.250727 CTGGTTGGAAGCGAAGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
1190 1460 0.250727 TGGTTGGAAGCGAAGGGAAG 60.251 55.000 0.00 0.00 0.00 3.46
1192 1462 1.303317 TTGGAAGCGAAGGGAAGCC 60.303 57.895 0.00 0.00 0.00 4.35
1302 1575 2.473760 CGGCGACAGAGACGGAGAT 61.474 63.158 0.00 0.00 0.00 2.75
1305 1578 0.308376 GCGACAGAGACGGAGATACC 59.692 60.000 0.00 0.00 0.00 2.73
1394 1668 2.088423 TCAGTTGTCGGTTTTGCTTGT 58.912 42.857 0.00 0.00 0.00 3.16
1432 1709 2.495270 TGCATCTAGGCATCTAGCTAGC 59.505 50.000 16.35 6.62 44.79 3.42
1435 1712 4.036734 GCATCTAGGCATCTAGCTAGCTAG 59.963 50.000 36.20 36.20 45.38 3.42
1438 1715 1.203112 AGGCATCTAGCTAGCTAGGCA 60.203 52.381 38.82 27.04 44.45 4.75
1439 1716 1.067213 GGCATCTAGCTAGCTAGGCAC 60.067 57.143 38.82 29.31 44.45 5.01
1440 1717 1.402194 GCATCTAGCTAGCTAGGCACG 60.402 57.143 38.82 27.76 44.45 5.34
1441 1718 1.883275 CATCTAGCTAGCTAGGCACGT 59.117 52.381 38.82 22.73 44.45 4.49
1442 1719 2.924757 TCTAGCTAGCTAGGCACGTA 57.075 50.000 38.82 23.15 44.45 3.57
1443 1720 2.492012 TCTAGCTAGCTAGGCACGTAC 58.508 52.381 38.82 3.65 44.45 3.67
1444 1721 2.158856 TCTAGCTAGCTAGGCACGTACA 60.159 50.000 38.82 21.92 44.45 2.90
1445 1722 1.025812 AGCTAGCTAGGCACGTACAG 58.974 55.000 17.69 0.00 0.00 2.74
1446 1723 0.739561 GCTAGCTAGGCACGTACAGT 59.260 55.000 22.10 0.00 0.00 3.55
1447 1724 1.945394 GCTAGCTAGGCACGTACAGTA 59.055 52.381 22.10 0.00 0.00 2.74
1448 1725 2.286891 GCTAGCTAGGCACGTACAGTAC 60.287 54.545 22.10 0.00 0.00 2.73
1489 1878 0.466007 TGCCGGTAAGATGCATGCAT 60.466 50.000 32.66 32.66 39.69 3.96
1490 1879 0.039798 GCCGGTAAGATGCATGCATG 60.040 55.000 36.73 22.70 36.70 4.06
1507 1896 3.808726 TGCATGCATTTTGGTTCAAGTTC 59.191 39.130 18.46 0.00 0.00 3.01
1529 1918 3.724508 TTGATTTCTTCAAAGGCGCAA 57.275 38.095 10.83 0.00 41.38 4.85
1530 1919 3.011949 TGATTTCTTCAAAGGCGCAAC 57.988 42.857 10.83 0.00 0.00 4.17
1532 1921 1.107114 TTTCTTCAAAGGCGCAACCA 58.893 45.000 10.83 0.00 43.14 3.67
1534 1923 0.465460 TCTTCAAAGGCGCAACCACT 60.465 50.000 10.83 0.00 43.14 4.00
1536 1925 0.465460 TTCAAAGGCGCAACCACTCT 60.465 50.000 10.83 0.00 43.14 3.24
1542 1931 1.078848 GCGCAACCACTCTCTCCAT 60.079 57.895 0.30 0.00 0.00 3.41
1551 1941 3.269381 ACCACTCTCTCCATCTCTCTCTT 59.731 47.826 0.00 0.00 0.00 2.85
1557 1947 4.229353 TCTCTCCATCTCTCTCTTCCTTGA 59.771 45.833 0.00 0.00 0.00 3.02
1564 1954 5.657826 TCTCTCTCTTCCTTGATGTGAAG 57.342 43.478 0.00 0.00 39.44 3.02
1586 1976 1.956477 GTTGTTGGATCCTTGCACTGT 59.044 47.619 14.23 0.00 0.00 3.55
1619 2053 8.526147 GTCCCTAACTTGTTCAAGTAGTATACA 58.474 37.037 16.84 0.00 46.26 2.29
1656 2090 1.614996 GAGCTCCTCGATCCATCTCA 58.385 55.000 0.87 0.00 0.00 3.27
1657 2091 1.269448 GAGCTCCTCGATCCATCTCAC 59.731 57.143 0.87 0.00 0.00 3.51
1658 2092 1.035923 GCTCCTCGATCCATCTCACA 58.964 55.000 0.00 0.00 0.00 3.58
1659 2093 1.000385 GCTCCTCGATCCATCTCACAG 60.000 57.143 0.00 0.00 0.00 3.66
1660 2094 2.580962 CTCCTCGATCCATCTCACAGA 58.419 52.381 0.00 0.00 0.00 3.41
1661 2095 2.293122 CTCCTCGATCCATCTCACAGAC 59.707 54.545 0.00 0.00 0.00 3.51
1662 2096 2.027385 CCTCGATCCATCTCACAGACA 58.973 52.381 0.00 0.00 0.00 3.41
1663 2097 2.223688 CCTCGATCCATCTCACAGACAC 60.224 54.545 0.00 0.00 0.00 3.67
1664 2098 2.687425 CTCGATCCATCTCACAGACACT 59.313 50.000 0.00 0.00 0.00 3.55
1665 2099 3.879892 CTCGATCCATCTCACAGACACTA 59.120 47.826 0.00 0.00 0.00 2.74
1666 2100 3.879892 TCGATCCATCTCACAGACACTAG 59.120 47.826 0.00 0.00 0.00 2.57
1667 2101 3.549827 CGATCCATCTCACAGACACTAGC 60.550 52.174 0.00 0.00 0.00 3.42
1668 2102 2.807676 TCCATCTCACAGACACTAGCA 58.192 47.619 0.00 0.00 0.00 3.49
1669 2103 3.165071 TCCATCTCACAGACACTAGCAA 58.835 45.455 0.00 0.00 0.00 3.91
1670 2104 3.194329 TCCATCTCACAGACACTAGCAAG 59.806 47.826 0.00 0.00 0.00 4.01
1671 2105 3.056250 CCATCTCACAGACACTAGCAAGT 60.056 47.826 0.00 0.00 35.91 3.16
1672 2106 4.562347 CCATCTCACAGACACTAGCAAGTT 60.562 45.833 0.00 0.00 31.97 2.66
1673 2107 5.336770 CCATCTCACAGACACTAGCAAGTTA 60.337 44.000 0.00 0.00 31.97 2.24
1674 2108 5.122512 TCTCACAGACACTAGCAAGTTAC 57.877 43.478 0.00 0.00 31.97 2.50
1675 2109 4.827835 TCTCACAGACACTAGCAAGTTACT 59.172 41.667 0.00 0.00 31.97 2.24
1676 2110 6.002082 TCTCACAGACACTAGCAAGTTACTA 58.998 40.000 0.00 0.00 31.97 1.82
1677 2111 6.149640 TCTCACAGACACTAGCAAGTTACTAG 59.850 42.308 8.38 8.38 42.37 2.57
1678 2112 4.859798 CACAGACACTAGCAAGTTACTAGC 59.140 45.833 9.67 0.00 40.70 3.42
1679 2113 4.767928 ACAGACACTAGCAAGTTACTAGCT 59.232 41.667 9.67 0.71 40.70 3.32
1680 2114 5.098893 CAGACACTAGCAAGTTACTAGCTG 58.901 45.833 9.67 9.52 40.70 4.24
1681 2115 3.851098 ACACTAGCAAGTTACTAGCTGC 58.149 45.455 9.67 0.00 40.70 5.25
1682 2116 3.511934 ACACTAGCAAGTTACTAGCTGCT 59.488 43.478 13.54 13.54 40.70 4.24
1683 2117 4.705507 ACACTAGCAAGTTACTAGCTGCTA 59.294 41.667 14.21 14.21 40.70 3.49
1684 2118 5.038033 CACTAGCAAGTTACTAGCTGCTAC 58.962 45.833 11.77 0.00 40.70 3.58
1685 2119 4.951094 ACTAGCAAGTTACTAGCTGCTACT 59.049 41.667 11.77 0.67 40.70 2.57
1686 2120 6.038382 CACTAGCAAGTTACTAGCTGCTACTA 59.962 42.308 11.77 2.66 40.70 1.82
1687 2121 5.251601 AGCAAGTTACTAGCTGCTACTAC 57.748 43.478 8.12 4.36 37.20 2.73
1688 2122 4.951094 AGCAAGTTACTAGCTGCTACTACT 59.049 41.667 8.12 6.53 37.20 2.57
1689 2123 6.120905 AGCAAGTTACTAGCTGCTACTACTA 58.879 40.000 8.12 0.00 37.20 1.82
1690 2124 6.038492 AGCAAGTTACTAGCTGCTACTACTAC 59.962 42.308 8.12 5.83 37.20 2.73
1691 2125 6.183360 GCAAGTTACTAGCTGCTACTACTACA 60.183 42.308 5.02 0.00 0.00 2.74
1692 2126 6.923928 AGTTACTAGCTGCTACTACTACAC 57.076 41.667 5.02 0.00 0.00 2.90
1693 2127 6.652053 AGTTACTAGCTGCTACTACTACACT 58.348 40.000 5.02 0.00 0.00 3.55
1694 2128 7.790027 AGTTACTAGCTGCTACTACTACACTA 58.210 38.462 5.02 0.00 0.00 2.74
1695 2129 7.927629 AGTTACTAGCTGCTACTACTACACTAG 59.072 40.741 5.02 0.00 33.68 2.57
1696 2130 5.058490 ACTAGCTGCTACTACTACACTAGC 58.942 45.833 5.02 0.00 34.60 3.42
1697 2131 3.887352 AGCTGCTACTACTACACTAGCA 58.113 45.455 0.00 0.00 40.43 3.49
1698 2132 3.628487 AGCTGCTACTACTACACTAGCAC 59.372 47.826 0.00 0.00 38.34 4.40
1699 2133 3.243134 GCTGCTACTACTACACTAGCACC 60.243 52.174 0.00 0.00 38.34 5.01
1700 2134 3.945921 CTGCTACTACTACACTAGCACCA 59.054 47.826 0.00 0.00 38.34 4.17
1701 2135 4.338012 TGCTACTACTACACTAGCACCAA 58.662 43.478 0.00 0.00 38.34 3.67
1702 2136 4.768448 TGCTACTACTACACTAGCACCAAA 59.232 41.667 0.00 0.00 38.34 3.28
1703 2137 5.100943 GCTACTACTACACTAGCACCAAAC 58.899 45.833 0.00 0.00 34.24 2.93
1704 2138 4.170292 ACTACTACACTAGCACCAAACG 57.830 45.455 0.00 0.00 0.00 3.60
1705 2139 3.822735 ACTACTACACTAGCACCAAACGA 59.177 43.478 0.00 0.00 0.00 3.85
1706 2140 3.738830 ACTACACTAGCACCAAACGAA 57.261 42.857 0.00 0.00 0.00 3.85
1707 2141 3.650139 ACTACACTAGCACCAAACGAAG 58.350 45.455 0.00 0.00 0.00 3.79
1708 2142 2.902705 ACACTAGCACCAAACGAAGA 57.097 45.000 0.00 0.00 0.00 2.87
1709 2143 3.188159 ACACTAGCACCAAACGAAGAA 57.812 42.857 0.00 0.00 0.00 2.52
1710 2144 3.131396 ACACTAGCACCAAACGAAGAAG 58.869 45.455 0.00 0.00 0.00 2.85
1711 2145 3.131396 CACTAGCACCAAACGAAGAAGT 58.869 45.455 0.00 0.00 0.00 3.01
1712 2146 3.184581 CACTAGCACCAAACGAAGAAGTC 59.815 47.826 0.00 0.00 0.00 3.01
1721 2155 3.300588 GAAGAAGTCGATCGCCGC 58.699 61.111 11.09 3.08 38.37 6.53
1722 2156 2.568912 GAAGAAGTCGATCGCCGCG 61.569 63.158 11.09 6.39 38.37 6.46
1736 2170 3.455195 CGCGACACACACGTACGG 61.455 66.667 21.06 11.05 0.00 4.02
1757 2191 4.218722 GGTACGCACATGGAAGGG 57.781 61.111 0.00 0.00 0.00 3.95
1758 2192 1.451387 GGTACGCACATGGAAGGGG 60.451 63.158 0.00 0.00 0.00 4.79
1759 2193 1.298667 GTACGCACATGGAAGGGGT 59.701 57.895 0.00 0.94 0.00 4.95
1760 2194 1.024579 GTACGCACATGGAAGGGGTG 61.025 60.000 0.00 0.00 35.68 4.61
1764 2198 1.379916 CACATGGAAGGGGTGCTGA 59.620 57.895 0.00 0.00 0.00 4.26
1862 2308 0.834612 TTTGGAACGGTGTCTGTCCT 59.165 50.000 0.00 0.00 0.00 3.85
1867 2313 0.178958 AACGGTGTCTGTCCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
1868 2314 0.609681 ACGGTGTCTGTCCTCTCCTC 60.610 60.000 0.00 0.00 0.00 3.71
1869 2315 0.322997 CGGTGTCTGTCCTCTCCTCT 60.323 60.000 0.00 0.00 0.00 3.69
1870 2316 1.470051 GGTGTCTGTCCTCTCCTCTC 58.530 60.000 0.00 0.00 0.00 3.20
1871 2317 1.470051 GTGTCTGTCCTCTCCTCTCC 58.530 60.000 0.00 0.00 0.00 3.71
1872 2318 1.005450 GTGTCTGTCCTCTCCTCTCCT 59.995 57.143 0.00 0.00 0.00 3.69
1873 2319 1.283613 TGTCTGTCCTCTCCTCTCCTC 59.716 57.143 0.00 0.00 0.00 3.71
1874 2320 1.564348 GTCTGTCCTCTCCTCTCCTCT 59.436 57.143 0.00 0.00 0.00 3.69
1875 2321 1.843851 TCTGTCCTCTCCTCTCCTCTC 59.156 57.143 0.00 0.00 0.00 3.20
1876 2322 0.923358 TGTCCTCTCCTCTCCTCTCC 59.077 60.000 0.00 0.00 0.00 3.71
1877 2323 1.222567 GTCCTCTCCTCTCCTCTCCT 58.777 60.000 0.00 0.00 0.00 3.69
1878 2324 1.143073 GTCCTCTCCTCTCCTCTCCTC 59.857 61.905 0.00 0.00 0.00 3.71
1879 2325 1.010793 TCCTCTCCTCTCCTCTCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
1880 2326 1.421646 CCTCTCCTCTCCTCTCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1881 2327 1.421646 CTCTCCTCTCCTCTCCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
1882 2328 1.221635 CTCCTCTCCTCTCCTCTCCA 58.778 60.000 0.00 0.00 0.00 3.86
1883 2329 0.923358 TCCTCTCCTCTCCTCTCCAC 59.077 60.000 0.00 0.00 0.00 4.02
1884 2330 0.926293 CCTCTCCTCTCCTCTCCACT 59.074 60.000 0.00 0.00 0.00 4.00
1885 2331 1.133792 CCTCTCCTCTCCTCTCCACTC 60.134 61.905 0.00 0.00 0.00 3.51
1886 2332 1.563879 CTCTCCTCTCCTCTCCACTCA 59.436 57.143 0.00 0.00 0.00 3.41
1887 2333 1.996291 TCTCCTCTCCTCTCCACTCAA 59.004 52.381 0.00 0.00 0.00 3.02
1888 2334 2.025416 TCTCCTCTCCTCTCCACTCAAG 60.025 54.545 0.00 0.00 0.00 3.02
1889 2335 1.006519 TCCTCTCCTCTCCACTCAAGG 59.993 57.143 0.00 0.00 0.00 3.61
1890 2336 1.272985 CCTCTCCTCTCCACTCAAGGT 60.273 57.143 0.00 0.00 0.00 3.50
1891 2337 2.099405 CTCTCCTCTCCACTCAAGGTC 58.901 57.143 0.00 0.00 0.00 3.85
1892 2338 1.713647 TCTCCTCTCCACTCAAGGTCT 59.286 52.381 0.00 0.00 0.00 3.85
1893 2339 2.099405 CTCCTCTCCACTCAAGGTCTC 58.901 57.143 0.00 0.00 0.00 3.36
1894 2340 1.429299 TCCTCTCCACTCAAGGTCTCA 59.571 52.381 0.00 0.00 0.00 3.27
1895 2341 2.158310 TCCTCTCCACTCAAGGTCTCAA 60.158 50.000 0.00 0.00 0.00 3.02
1896 2342 2.233431 CCTCTCCACTCAAGGTCTCAAG 59.767 54.545 0.00 0.00 0.00 3.02
1897 2343 1.620819 TCTCCACTCAAGGTCTCAAGC 59.379 52.381 0.00 0.00 0.00 4.01
1898 2344 0.687354 TCCACTCAAGGTCTCAAGCC 59.313 55.000 0.00 0.00 0.00 4.35
1899 2345 0.397941 CCACTCAAGGTCTCAAGCCA 59.602 55.000 0.00 0.00 0.00 4.75
1900 2346 1.202806 CCACTCAAGGTCTCAAGCCAA 60.203 52.381 0.00 0.00 0.00 4.52
1901 2347 1.876156 CACTCAAGGTCTCAAGCCAAC 59.124 52.381 0.00 0.00 0.00 3.77
1902 2348 1.490490 ACTCAAGGTCTCAAGCCAACA 59.510 47.619 0.00 0.00 0.00 3.33
1903 2349 2.107204 ACTCAAGGTCTCAAGCCAACAT 59.893 45.455 0.00 0.00 0.00 2.71
1904 2350 3.152341 CTCAAGGTCTCAAGCCAACATT 58.848 45.455 0.00 0.00 0.00 2.71
1905 2351 3.149196 TCAAGGTCTCAAGCCAACATTC 58.851 45.455 0.00 0.00 0.00 2.67
1906 2352 2.206576 AGGTCTCAAGCCAACATTCC 57.793 50.000 0.00 0.00 0.00 3.01
1907 2353 0.804989 GGTCTCAAGCCAACATTCCG 59.195 55.000 0.00 0.00 0.00 4.30
1908 2354 0.169009 GTCTCAAGCCAACATTCCGC 59.831 55.000 0.00 0.00 0.00 5.54
1909 2355 0.250684 TCTCAAGCCAACATTCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
1910 2356 0.597568 CTCAAGCCAACATTCCGCAA 59.402 50.000 0.00 0.00 0.00 4.85
1911 2357 1.000385 CTCAAGCCAACATTCCGCAAA 60.000 47.619 0.00 0.00 0.00 3.68
1912 2358 1.410517 TCAAGCCAACATTCCGCAAAA 59.589 42.857 0.00 0.00 0.00 2.44
1913 2359 2.159043 TCAAGCCAACATTCCGCAAAAA 60.159 40.909 0.00 0.00 0.00 1.94
1951 2397 2.489329 GCCAACATGCATGACAAGTAGT 59.511 45.455 32.75 4.93 28.03 2.73
1973 2425 9.553064 GTAGTAGTAGGAGTAAACATGTAGCTA 57.447 37.037 0.00 0.00 0.00 3.32
1974 2426 8.680039 AGTAGTAGGAGTAAACATGTAGCTAG 57.320 38.462 0.00 0.00 0.00 3.42
1975 2427 6.394025 AGTAGGAGTAAACATGTAGCTAGC 57.606 41.667 6.62 6.62 0.00 3.42
1976 2428 6.130569 AGTAGGAGTAAACATGTAGCTAGCT 58.869 40.000 23.12 23.12 0.00 3.32
2009 2468 2.561478 AAGTTGATAGCCACGGTTGT 57.439 45.000 0.00 0.00 0.00 3.32
2058 2522 0.179084 GGCGGTAGTGATTAGCTGCA 60.179 55.000 1.02 0.00 33.80 4.41
2163 2649 2.445274 CCTACCCCCACCCCTACG 60.445 72.222 0.00 0.00 0.00 3.51
2252 2738 2.268920 CGGGGAGCAAGCAAGCTA 59.731 61.111 2.69 0.00 46.75 3.32
2267 2754 6.909550 AGCAAGCTAGTATTCTATGCTAGT 57.090 37.500 2.01 0.05 44.38 2.57
2345 2843 2.695666 GAGGGAGAGACCGAATGAATCA 59.304 50.000 0.00 0.00 40.11 2.57
2346 2844 3.312890 AGGGAGAGACCGAATGAATCAT 58.687 45.455 0.00 0.00 40.11 2.45
2347 2845 3.070734 AGGGAGAGACCGAATGAATCATG 59.929 47.826 0.00 0.00 40.11 3.07
2348 2846 3.397482 GGAGAGACCGAATGAATCATGG 58.603 50.000 0.00 0.00 0.00 3.66
2349 2847 2.805099 GAGAGACCGAATGAATCATGGC 59.195 50.000 0.00 0.00 0.00 4.40
2350 2848 1.528586 GAGACCGAATGAATCATGGCG 59.471 52.381 10.52 10.52 0.00 5.69
2351 2849 1.134401 AGACCGAATGAATCATGGCGT 60.134 47.619 14.56 4.18 0.00 5.68
2352 2850 1.003545 GACCGAATGAATCATGGCGTG 60.004 52.381 14.56 0.00 0.00 5.34
2353 2851 0.317269 CCGAATGAATCATGGCGTGC 60.317 55.000 14.56 0.00 0.00 5.34
2354 2852 0.377905 CGAATGAATCATGGCGTGCA 59.622 50.000 0.65 0.00 0.00 4.57
2355 2853 1.002142 CGAATGAATCATGGCGTGCAT 60.002 47.619 0.65 0.00 0.00 3.96
2356 2854 2.390938 GAATGAATCATGGCGTGCATG 58.609 47.619 0.09 0.09 0.00 4.06
2357 2855 1.682740 ATGAATCATGGCGTGCATGA 58.317 45.000 10.93 6.59 42.41 3.07
2358 2856 1.018910 TGAATCATGGCGTGCATGAG 58.981 50.000 10.93 0.00 41.64 2.90
2359 2857 1.302366 GAATCATGGCGTGCATGAGA 58.698 50.000 10.93 1.65 41.64 3.27
2384 2882 0.040646 TTCTTCTCCGGTCCTGCCTA 59.959 55.000 0.00 0.00 34.25 3.93
2388 2886 3.161450 TCCGGTCCTGCCTATGCC 61.161 66.667 0.00 0.00 36.33 4.40
2389 2887 3.164269 CCGGTCCTGCCTATGCCT 61.164 66.667 0.00 0.00 36.33 4.75
2390 2888 1.837051 CCGGTCCTGCCTATGCCTA 60.837 63.158 0.00 0.00 36.33 3.93
2392 2890 0.036952 CGGTCCTGCCTATGCCTATG 60.037 60.000 0.00 0.00 36.33 2.23
2396 2894 1.203300 TCCTGCCTATGCCTATGCCTA 60.203 52.381 0.00 0.00 36.33 3.93
2397 2895 1.842562 CCTGCCTATGCCTATGCCTAT 59.157 52.381 0.00 0.00 36.33 2.57
2398 2896 2.421107 CCTGCCTATGCCTATGCCTATG 60.421 54.545 0.00 0.00 36.33 2.23
2399 2897 1.065199 TGCCTATGCCTATGCCTATGC 60.065 52.381 0.00 0.00 36.33 3.14
2400 2898 1.748591 GCCTATGCCTATGCCTATGCC 60.749 57.143 0.00 0.00 36.33 4.40
2401 2899 1.842562 CCTATGCCTATGCCTATGCCT 59.157 52.381 0.00 0.00 36.33 4.75
2402 2900 2.158842 CCTATGCCTATGCCTATGCCTC 60.159 54.545 0.00 0.00 36.33 4.70
2403 2901 1.666365 ATGCCTATGCCTATGCCTCT 58.334 50.000 0.00 0.00 36.33 3.69
2404 2902 0.689055 TGCCTATGCCTATGCCTCTG 59.311 55.000 0.00 0.00 36.33 3.35
2405 2903 0.676151 GCCTATGCCTATGCCTCTGC 60.676 60.000 0.00 0.00 36.33 4.26
2425 2923 2.674380 CTGCCTGGTTGGTCCTGC 60.674 66.667 0.00 0.00 38.35 4.85
2427 2925 2.985847 GCCTGGTTGGTCCTGCAC 60.986 66.667 0.00 0.00 38.35 4.57
2428 2926 2.839098 CCTGGTTGGTCCTGCACT 59.161 61.111 0.00 0.00 37.07 4.40
2429 2927 1.601759 CCTGGTTGGTCCTGCACTG 60.602 63.158 0.00 0.00 37.07 3.66
2430 2928 1.601759 CTGGTTGGTCCTGCACTGG 60.602 63.158 0.00 0.00 37.07 4.00
2431 2929 2.343475 CTGGTTGGTCCTGCACTGGT 62.343 60.000 0.00 0.00 37.07 4.00
2432 2930 1.898574 GGTTGGTCCTGCACTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
2456 2958 1.446272 GAGACTGTGCGTGTAGGCC 60.446 63.158 0.00 0.00 0.00 5.19
2472 2974 4.406173 CCGCGATCCGATCCCGAG 62.406 72.222 15.47 2.24 40.02 4.63
2487 2989 3.490759 GAGGCACGCACATGTCCG 61.491 66.667 7.83 7.83 0.00 4.79
2505 3022 1.563435 CGATCCATCCATCTGCGCAC 61.563 60.000 5.66 0.00 0.00 5.34
2522 3039 1.604593 ACCTACACGGCTACACGGT 60.605 57.895 0.00 0.00 38.39 4.83
2570 3087 2.009681 TGCTTGTCCCTGTCTACAGA 57.990 50.000 11.69 0.00 46.59 3.41
2575 3092 4.618693 GCTTGTCCCTGTCTACAGAACTAC 60.619 50.000 11.69 4.85 46.59 2.73
2577 3094 4.333690 TGTCCCTGTCTACAGAACTACTC 58.666 47.826 11.69 0.00 46.59 2.59
2578 3095 3.695556 GTCCCTGTCTACAGAACTACTCC 59.304 52.174 11.69 0.00 46.59 3.85
2579 3096 3.592427 TCCCTGTCTACAGAACTACTCCT 59.408 47.826 11.69 0.00 46.59 3.69
2580 3097 4.786994 TCCCTGTCTACAGAACTACTCCTA 59.213 45.833 11.69 0.00 46.59 2.94
2581 3098 4.883006 CCCTGTCTACAGAACTACTCCTAC 59.117 50.000 11.69 0.00 46.59 3.18
2582 3099 5.498393 CCTGTCTACAGAACTACTCCTACA 58.502 45.833 11.69 0.00 46.59 2.74
2583 3100 6.123651 CCTGTCTACAGAACTACTCCTACAT 58.876 44.000 11.69 0.00 46.59 2.29
2584 3101 6.038825 CCTGTCTACAGAACTACTCCTACATG 59.961 46.154 11.69 0.00 46.59 3.21
2679 3302 0.463620 GCAGCCTCTCTCAAGGTAGG 59.536 60.000 0.00 0.00 38.79 3.18
2693 3316 2.983296 AGGTAGGGCTGCAATCTATCT 58.017 47.619 0.50 3.10 0.00 1.98
2694 3317 4.133526 AGGTAGGGCTGCAATCTATCTA 57.866 45.455 0.50 0.00 0.00 1.98
2695 3318 3.835395 AGGTAGGGCTGCAATCTATCTAC 59.165 47.826 0.50 1.88 0.00 2.59
2696 3319 3.055747 GGTAGGGCTGCAATCTATCTACC 60.056 52.174 0.50 6.92 38.62 3.18
2698 3321 1.981495 GGGCTGCAATCTATCTACCCT 59.019 52.381 0.50 0.00 33.11 4.34
2699 3322 2.289945 GGGCTGCAATCTATCTACCCTG 60.290 54.545 0.50 0.00 33.11 4.45
2775 3503 7.230510 TCCATTTCTGCTTTCTTTAGCTTGTAA 59.769 33.333 0.00 0.00 41.76 2.41
2809 3538 2.092968 ACCTTTAATCGGATCAGCTGCA 60.093 45.455 9.47 0.00 0.00 4.41
2830 3565 1.737838 CTGCTCATCCACGGCTTTAA 58.262 50.000 0.00 0.00 0.00 1.52
2831 3566 2.292267 CTGCTCATCCACGGCTTTAAT 58.708 47.619 0.00 0.00 0.00 1.40
2832 3567 2.288666 TGCTCATCCACGGCTTTAATC 58.711 47.619 0.00 0.00 0.00 1.75
2833 3568 1.261619 GCTCATCCACGGCTTTAATCG 59.738 52.381 0.00 0.00 0.00 3.34
2861 3596 1.226211 CATCAGCGAGCGCCAAAAG 60.226 57.895 11.66 0.00 43.17 2.27
2867 3604 1.003769 GCGAGCGCCAAAAGGAAAAG 61.004 55.000 2.29 0.00 34.56 2.27
2872 3609 3.457234 AGCGCCAAAAGGAAAAGAAAAG 58.543 40.909 2.29 0.00 0.00 2.27
2873 3610 3.132111 AGCGCCAAAAGGAAAAGAAAAGA 59.868 39.130 2.29 0.00 0.00 2.52
2891 3659 5.803020 AAAGAAACGATCAGAATACCAGC 57.197 39.130 0.00 0.00 0.00 4.85
2893 3661 4.832248 AGAAACGATCAGAATACCAGCAA 58.168 39.130 0.00 0.00 0.00 3.91
2897 3665 3.126831 CGATCAGAATACCAGCAAGGAC 58.873 50.000 1.83 0.00 41.22 3.85
2974 3759 1.312371 ACGCCAACGCTAATGCCAAT 61.312 50.000 0.00 0.00 45.53 3.16
2975 3760 0.866906 CGCCAACGCTAATGCCAATG 60.867 55.000 0.00 0.00 35.36 2.82
2976 3761 1.147557 GCCAACGCTAATGCCAATGC 61.148 55.000 0.00 0.00 35.36 3.56
2977 3762 0.528249 CCAACGCTAATGCCAATGCC 60.528 55.000 0.00 0.00 36.33 4.40
2978 3763 0.173029 CAACGCTAATGCCAATGCCA 59.827 50.000 0.00 0.00 36.33 4.92
2979 3764 0.894141 AACGCTAATGCCAATGCCAA 59.106 45.000 0.00 0.00 36.33 4.52
2980 3765 0.457035 ACGCTAATGCCAATGCCAAG 59.543 50.000 0.00 0.00 36.33 3.61
2981 3766 0.249155 CGCTAATGCCAATGCCAAGG 60.249 55.000 0.00 0.00 36.33 3.61
2982 3767 1.113788 GCTAATGCCAATGCCAAGGA 58.886 50.000 0.00 0.00 36.33 3.36
3020 3805 0.319405 GCATGCCAAAGTTTCTGCCT 59.681 50.000 6.36 0.00 0.00 4.75
3031 3821 0.546267 TTTCTGCCTCCTCCTCTGCT 60.546 55.000 0.00 0.00 0.00 4.24
3049 3839 2.844946 GCTCCCTCAGCCTCTTTATTC 58.155 52.381 0.00 0.00 43.17 1.75
3050 3840 2.437651 GCTCCCTCAGCCTCTTTATTCT 59.562 50.000 0.00 0.00 43.17 2.40
3051 3841 3.494223 GCTCCCTCAGCCTCTTTATTCTC 60.494 52.174 0.00 0.00 43.17 2.87
3052 3842 3.041946 TCCCTCAGCCTCTTTATTCTCC 58.958 50.000 0.00 0.00 0.00 3.71
3053 3843 2.224161 CCCTCAGCCTCTTTATTCTCCG 60.224 54.545 0.00 0.00 0.00 4.63
3054 3844 2.478831 CTCAGCCTCTTTATTCTCCGC 58.521 52.381 0.00 0.00 0.00 5.54
3161 3977 1.742831 TCAAAGCCCACATTCATACGC 59.257 47.619 0.00 0.00 0.00 4.42
3165 4142 0.859232 GCCCACATTCATACGCTACG 59.141 55.000 0.00 0.00 0.00 3.51
3206 4188 1.883926 GGCGCCACTTTTCCTTTTCTA 59.116 47.619 24.80 0.00 0.00 2.10
3227 4209 2.604174 CGGCCAACGTCCACTTCAC 61.604 63.158 2.24 0.00 37.93 3.18
3237 4219 2.287915 CGTCCACTTCACTTCAACTTGG 59.712 50.000 0.00 0.00 0.00 3.61
3239 4221 3.561725 GTCCACTTCACTTCAACTTGGAG 59.438 47.826 0.00 0.00 32.35 3.86
3246 4228 3.569701 TCACTTCAACTTGGAGGCATTTC 59.430 43.478 2.00 0.00 0.00 2.17
3258 4240 0.465460 GGCATTTCCAGCCGTCCATA 60.465 55.000 0.00 0.00 43.15 2.74
3303 4289 1.226746 GGTCAAACCTTCAGTCCACG 58.773 55.000 0.00 0.00 34.73 4.94
3310 4296 1.238439 CCTTCAGTCCACGCATGTTT 58.762 50.000 0.00 0.00 0.00 2.83
3311 4297 1.197721 CCTTCAGTCCACGCATGTTTC 59.802 52.381 0.00 0.00 0.00 2.78
3312 4298 2.146342 CTTCAGTCCACGCATGTTTCT 58.854 47.619 0.00 0.00 0.00 2.52
3313 4299 3.325870 CTTCAGTCCACGCATGTTTCTA 58.674 45.455 0.00 0.00 0.00 2.10
3314 4300 2.959516 TCAGTCCACGCATGTTTCTAG 58.040 47.619 0.00 0.00 0.00 2.43
3316 4302 3.195610 TCAGTCCACGCATGTTTCTAGAT 59.804 43.478 0.00 0.00 0.00 1.98
3317 4303 4.401202 TCAGTCCACGCATGTTTCTAGATA 59.599 41.667 0.00 0.00 0.00 1.98
3319 4305 4.159693 AGTCCACGCATGTTTCTAGATACA 59.840 41.667 16.87 16.87 0.00 2.29
3320 4306 5.050490 GTCCACGCATGTTTCTAGATACAT 58.950 41.667 19.50 19.50 34.14 2.29
3322 4308 4.449068 CCACGCATGTTTCTAGATACATCC 59.551 45.833 21.61 14.52 32.04 3.51
3324 4310 5.698089 CACGCATGTTTCTAGATACATCCAT 59.302 40.000 21.61 3.25 32.04 3.41
3325 4311 6.203530 CACGCATGTTTCTAGATACATCCATT 59.796 38.462 21.61 4.68 32.04 3.16
3328 4314 7.800380 CGCATGTTTCTAGATACATCCATTTTC 59.200 37.037 21.61 7.92 32.04 2.29
3329 4315 7.800380 GCATGTTTCTAGATACATCCATTTTCG 59.200 37.037 21.61 11.74 32.04 3.46
3330 4316 9.045223 CATGTTTCTAGATACATCCATTTTCGA 57.955 33.333 21.61 0.00 32.04 3.71
3331 4317 8.648557 TGTTTCTAGATACATCCATTTTCGAG 57.351 34.615 11.47 0.00 0.00 4.04
3332 4318 8.474831 TGTTTCTAGATACATCCATTTTCGAGA 58.525 33.333 11.47 0.00 0.00 4.04
3333 4319 8.756864 GTTTCTAGATACATCCATTTTCGAGAC 58.243 37.037 8.30 0.00 0.00 3.36
3334 4320 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
3335 4321 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
3336 4322 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
3337 4323 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
3339 4325 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
3340 4326 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
3341 4327 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
3342 4328 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
3344 4330 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
3345 4331 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
3346 4332 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
3347 4333 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
3348 4334 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
3349 4335 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3350 4336 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3351 4337 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3352 4338 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3353 4339 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3354 4340 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3355 4341 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3356 4342 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3357 4343 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3358 4344 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
3359 4345 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73
3360 4346 0.911769 TCCGAACGGAGGGAGTAGTA 59.088 55.000 12.04 0.00 39.76 1.82
3361 4347 1.492176 TCCGAACGGAGGGAGTAGTAT 59.508 52.381 12.04 0.00 39.76 2.12
3362 4348 2.705658 TCCGAACGGAGGGAGTAGTATA 59.294 50.000 12.04 0.00 39.76 1.47
3363 4349 2.810852 CCGAACGGAGGGAGTAGTATAC 59.189 54.545 7.53 0.00 38.76 1.47
3365 4351 4.985744 CCGAACGGAGGGAGTAGTATACTT 60.986 50.000 11.40 0.00 45.40 2.24
3391 4377 2.501723 ACTCTTGTCAACAGTCCACACT 59.498 45.455 0.00 0.00 0.00 3.55
3446 4520 3.970410 CCCAGCCAGCCAAGGTGA 61.970 66.667 0.00 0.00 34.66 4.02
3447 4521 2.115910 CCAGCCAGCCAAGGTGAA 59.884 61.111 0.00 0.00 34.66 3.18
3448 4522 1.304713 CCAGCCAGCCAAGGTGAAT 60.305 57.895 0.00 0.00 34.66 2.57
3449 4523 1.318158 CCAGCCAGCCAAGGTGAATC 61.318 60.000 0.00 0.00 34.66 2.52
3450 4524 1.000396 AGCCAGCCAAGGTGAATCC 60.000 57.895 0.00 0.00 32.22 3.01
3451 4525 1.304381 GCCAGCCAAGGTGAATCCA 60.304 57.895 0.00 0.00 39.02 3.41
3452 4526 0.899717 GCCAGCCAAGGTGAATCCAA 60.900 55.000 0.00 0.00 39.02 3.53
3453 4527 1.180029 CCAGCCAAGGTGAATCCAAG 58.820 55.000 0.00 0.00 39.02 3.61
3454 4528 0.529378 CAGCCAAGGTGAATCCAAGC 59.471 55.000 0.00 0.00 39.02 4.01
3455 4529 0.407139 AGCCAAGGTGAATCCAAGCT 59.593 50.000 0.00 0.00 39.02 3.74
3456 4530 0.813821 GCCAAGGTGAATCCAAGCTC 59.186 55.000 0.00 0.00 39.02 4.09
3457 4531 1.615384 GCCAAGGTGAATCCAAGCTCT 60.615 52.381 0.00 0.00 39.02 4.09
3458 4532 2.089980 CCAAGGTGAATCCAAGCTCTG 58.910 52.381 0.00 0.00 39.02 3.35
3460 4534 0.034670 AGGTGAATCCAAGCTCTGGC 60.035 55.000 9.35 0.00 45.98 4.85
3530 4650 1.464687 CGCAGCAAGATGTTCGGAAAG 60.465 52.381 0.00 0.00 0.00 2.62
3543 4666 7.611855 AGATGTTCGGAAAGGAATTCAAACTAT 59.388 33.333 7.93 0.00 39.98 2.12
3583 4707 4.671831 TCAAAGATGGCCTGGTCAAAATA 58.328 39.130 4.49 0.00 0.00 1.40
3584 4708 5.083122 TCAAAGATGGCCTGGTCAAAATAA 58.917 37.500 4.49 0.00 0.00 1.40
3585 4709 5.541868 TCAAAGATGGCCTGGTCAAAATAAA 59.458 36.000 4.49 0.00 0.00 1.40
3586 4710 5.665916 AAGATGGCCTGGTCAAAATAAAG 57.334 39.130 4.49 0.00 0.00 1.85
3587 4711 4.677182 AGATGGCCTGGTCAAAATAAAGT 58.323 39.130 4.49 0.00 0.00 2.66
3588 4712 5.086621 AGATGGCCTGGTCAAAATAAAGTT 58.913 37.500 4.49 0.00 0.00 2.66
3594 4718 5.576128 CCTGGTCAAAATAAAGTTAGGGGA 58.424 41.667 0.00 0.00 0.00 4.81
3703 4827 2.094234 ACAACCACCTTTCACTTTGTGC 60.094 45.455 0.00 0.00 32.98 4.57
3742 4866 2.888834 TCCTGGAACAAAGCAAAAGC 57.111 45.000 0.00 0.00 38.70 3.51
3743 4867 1.412343 TCCTGGAACAAAGCAAAAGCC 59.588 47.619 0.00 0.00 38.70 4.35
3744 4868 1.490621 CTGGAACAAAGCAAAAGCCG 58.509 50.000 0.00 0.00 38.70 5.52
3756 4880 2.930455 GCAAAAGCCGGCACATACAAAT 60.930 45.455 31.54 0.00 0.00 2.32
3767 4891 6.294675 CCGGCACATACAAATATCATCCATTT 60.295 38.462 0.00 0.00 0.00 2.32
3769 4893 7.092716 GGCACATACAAATATCATCCATTTCC 58.907 38.462 0.00 0.00 0.00 3.13
3770 4894 7.255906 GGCACATACAAATATCATCCATTTCCA 60.256 37.037 0.00 0.00 0.00 3.53
3809 4933 8.506437 TCTATGCTTCTTTCTAAAATGTGTGTG 58.494 33.333 0.00 0.00 0.00 3.82
3810 4934 6.449635 TGCTTCTTTCTAAAATGTGTGTGT 57.550 33.333 0.00 0.00 0.00 3.72
3811 4935 6.264832 TGCTTCTTTCTAAAATGTGTGTGTG 58.735 36.000 0.00 0.00 0.00 3.82
3812 4936 6.127758 TGCTTCTTTCTAAAATGTGTGTGTGT 60.128 34.615 0.00 0.00 0.00 3.72
3813 4937 6.751888 GCTTCTTTCTAAAATGTGTGTGTGTT 59.248 34.615 0.00 0.00 0.00 3.32
3814 4938 7.253750 GCTTCTTTCTAAAATGTGTGTGTGTTG 60.254 37.037 0.00 0.00 0.00 3.33
3815 4939 7.384439 TCTTTCTAAAATGTGTGTGTGTTGA 57.616 32.000 0.00 0.00 0.00 3.18
3816 4940 7.471721 TCTTTCTAAAATGTGTGTGTGTTGAG 58.528 34.615 0.00 0.00 0.00 3.02
3817 4941 6.993786 TTCTAAAATGTGTGTGTGTTGAGA 57.006 33.333 0.00 0.00 0.00 3.27
3818 4942 7.566760 TTCTAAAATGTGTGTGTGTTGAGAT 57.433 32.000 0.00 0.00 0.00 2.75
3819 4943 6.958255 TCTAAAATGTGTGTGTGTTGAGATG 58.042 36.000 0.00 0.00 0.00 2.90
3820 4944 3.631145 AATGTGTGTGTGTTGAGATGC 57.369 42.857 0.00 0.00 0.00 3.91
3821 4945 2.330440 TGTGTGTGTGTTGAGATGCT 57.670 45.000 0.00 0.00 0.00 3.79
3822 4946 2.642427 TGTGTGTGTGTTGAGATGCTT 58.358 42.857 0.00 0.00 0.00 3.91
3823 4947 2.613595 TGTGTGTGTGTTGAGATGCTTC 59.386 45.455 0.00 0.00 0.00 3.86
3824 4948 2.874701 GTGTGTGTGTTGAGATGCTTCT 59.125 45.455 0.96 0.96 33.88 2.85
3825 4949 3.313526 GTGTGTGTGTTGAGATGCTTCTT 59.686 43.478 3.29 0.00 30.30 2.52
3826 4950 3.947196 TGTGTGTGTTGAGATGCTTCTTT 59.053 39.130 3.29 0.00 30.30 2.52
3827 4951 4.035558 TGTGTGTGTTGAGATGCTTCTTTC 59.964 41.667 3.29 0.00 30.30 2.62
3828 4952 4.274459 GTGTGTGTTGAGATGCTTCTTTCT 59.726 41.667 3.29 0.00 30.30 2.52
3829 4953 5.466728 GTGTGTGTTGAGATGCTTCTTTCTA 59.533 40.000 3.29 0.00 30.30 2.10
3830 4954 6.017934 GTGTGTGTTGAGATGCTTCTTTCTAA 60.018 38.462 3.29 0.00 30.30 2.10
3831 4955 6.542005 TGTGTGTTGAGATGCTTCTTTCTAAA 59.458 34.615 3.29 0.00 30.30 1.85
3832 4956 7.066887 TGTGTGTTGAGATGCTTCTTTCTAAAA 59.933 33.333 3.29 0.00 30.30 1.52
3833 4957 8.078596 GTGTGTTGAGATGCTTCTTTCTAAAAT 58.921 33.333 3.29 0.00 30.30 1.82
3834 4958 9.283768 TGTGTTGAGATGCTTCTTTCTAAAATA 57.716 29.630 3.29 0.00 30.30 1.40
3853 4977 9.655769 CTAAAATATATGTGTGTGTTCAGATGC 57.344 33.333 0.00 0.00 0.00 3.91
3859 4987 1.538075 TGTGTGTTCAGATGCATGCAG 59.462 47.619 26.69 12.83 0.00 4.41
3909 5038 3.384146 TGTGGCAAAGAAGCTTTGATCAA 59.616 39.130 20.54 3.38 34.17 2.57
3919 5049 4.228912 AGCTTTGATCAACTTCAAACCG 57.771 40.909 7.89 0.00 39.91 4.44
3926 5056 0.934496 CAACTTCAAACCGTCTCGCA 59.066 50.000 0.00 0.00 0.00 5.10
3971 5109 7.852263 TCTTTTATGTTCTTTTTGGACCCAAA 58.148 30.769 9.96 9.96 43.23 3.28
4041 5182 5.419155 GGATAGATCGATGTGGAAGGATGTA 59.581 44.000 0.54 0.00 0.00 2.29
4042 5183 6.097554 GGATAGATCGATGTGGAAGGATGTAT 59.902 42.308 0.54 0.00 30.71 2.29
4043 5184 5.398603 AGATCGATGTGGAAGGATGTATC 57.601 43.478 0.54 0.00 0.00 2.24
4069 5212 6.625873 TGGTTTCATATATAAATGTGCGCA 57.374 33.333 5.66 5.66 0.00 6.09
4143 5289 9.616634 CAACCATGCATTTATCTATTCATACAC 57.383 33.333 0.00 0.00 0.00 2.90
4207 5366 2.969262 GACTATTCCTCCCCCTCTTCTG 59.031 54.545 0.00 0.00 0.00 3.02
4248 5407 5.445069 TGATCAACTTCAAAACTTCCTCCA 58.555 37.500 0.00 0.00 0.00 3.86
4624 5801 3.028850 AGATGCATCAAAAGATGGGTGG 58.971 45.455 27.81 0.00 33.41 4.61
4627 5804 3.979911 TGCATCAAAAGATGGGTGGTAT 58.020 40.909 7.49 0.00 33.41 2.73
4628 5805 3.953612 TGCATCAAAAGATGGGTGGTATC 59.046 43.478 7.49 0.00 33.41 2.24
4629 5806 3.953612 GCATCAAAAGATGGGTGGTATCA 59.046 43.478 7.49 0.00 33.41 2.15
4630 5807 4.586001 GCATCAAAAGATGGGTGGTATCAT 59.414 41.667 7.49 0.00 33.41 2.45
4631 5808 5.508489 GCATCAAAAGATGGGTGGTATCATG 60.508 44.000 7.49 0.00 33.41 3.07
4633 5810 5.825532 TCAAAAGATGGGTGGTATCATGAA 58.174 37.500 0.00 0.00 0.00 2.57
4634 5811 6.252233 TCAAAAGATGGGTGGTATCATGAAA 58.748 36.000 0.00 0.00 0.00 2.69
4635 5812 6.377996 TCAAAAGATGGGTGGTATCATGAAAG 59.622 38.462 0.00 0.00 0.00 2.62
4665 5847 8.607459 GGTAAATCTGACTGTAGATGAAACATG 58.393 37.037 0.00 0.00 37.48 3.21
4709 5896 5.019470 TGGGCAGACAGAGGTATATATCTG 58.981 45.833 0.00 6.06 46.76 2.90
4718 5912 8.657387 ACAGAGGTATATATCTGCAGTATGTT 57.343 34.615 14.67 6.30 45.56 2.71
4804 6014 3.448469 CTGGCCCTAGCTAGCTAGT 57.552 57.895 37.50 14.62 41.04 2.57
4805 6015 1.710816 CTGGCCCTAGCTAGCTAGTT 58.289 55.000 37.50 18.30 41.04 2.24
4812 6030 3.323403 CCCTAGCTAGCTAGTTTGCAGAT 59.677 47.826 37.50 10.00 43.22 2.90
4814 6032 5.465935 CCTAGCTAGCTAGTTTGCAGATAC 58.534 45.833 37.50 1.39 43.22 2.24
4954 6205 4.024556 CAGCACTTAGTTTCTTGACCACTG 60.025 45.833 0.00 0.00 0.00 3.66
4958 6209 5.465724 CACTTAGTTTCTTGACCACTGTACC 59.534 44.000 0.00 0.00 0.00 3.34
4977 6228 3.545703 ACCAGTGGCAAGTATAGCATTC 58.454 45.455 9.78 0.00 0.00 2.67
5055 6314 1.295020 TTACCAGTGGAGGGATTGGG 58.705 55.000 18.40 0.00 34.99 4.12
5276 6603 2.736670 AGGTTGCTTGGAGACTGTTT 57.263 45.000 0.00 0.00 0.00 2.83
5301 6634 7.777095 TCTGTTTGGTTGCTAATTGTAGTTTT 58.223 30.769 0.00 0.00 0.00 2.43
5302 6635 8.904834 TCTGTTTGGTTGCTAATTGTAGTTTTA 58.095 29.630 0.00 0.00 0.00 1.52
5303 6636 9.180678 CTGTTTGGTTGCTAATTGTAGTTTTAG 57.819 33.333 0.00 0.00 0.00 1.85
5304 6637 8.904834 TGTTTGGTTGCTAATTGTAGTTTTAGA 58.095 29.630 0.00 0.00 0.00 2.10
5305 6638 9.394477 GTTTGGTTGCTAATTGTAGTTTTAGAG 57.606 33.333 0.00 0.00 0.00 2.43
5306 6639 8.685838 TTGGTTGCTAATTGTAGTTTTAGAGT 57.314 30.769 0.00 0.00 0.00 3.24
5307 6640 9.781633 TTGGTTGCTAATTGTAGTTTTAGAGTA 57.218 29.630 0.00 0.00 0.00 2.59
5356 6695 2.417933 GTCCTGCAGTTGCTACAATCTG 59.582 50.000 13.81 0.00 42.66 2.90
5405 6744 3.827008 TTTATCTGGAGCTAGCTGTGG 57.173 47.619 24.99 11.32 0.00 4.17
5443 6794 5.599242 TGATGCATGGATATCAATGGTGTTT 59.401 36.000 19.67 0.00 30.84 2.83
5453 6804 9.950680 GGATATCAATGGTGTTTTGTATAGTTG 57.049 33.333 4.83 0.00 0.00 3.16
5497 6848 5.726980 TGATTCTGACCCCTTGAATTTTG 57.273 39.130 0.00 0.00 31.49 2.44
6078 7470 1.156736 TCGTTGCTTAAGGCTCAAGC 58.843 50.000 15.70 15.70 46.90 4.01
6546 7969 2.579201 CGTCCGCTTCAGGTCCAT 59.421 61.111 0.00 0.00 0.00 3.41
6547 7970 1.519455 CGTCCGCTTCAGGTCCATC 60.519 63.158 0.00 0.00 0.00 3.51
6548 7971 1.596934 GTCCGCTTCAGGTCCATCA 59.403 57.895 0.00 0.00 0.00 3.07
6573 8010 3.257469 TCTCTGAATCCAGCACATGAC 57.743 47.619 0.00 0.00 40.20 3.06
6637 8112 1.171549 TTGCATGCAGCCGTGAGAAA 61.172 50.000 21.50 0.00 44.83 2.52
6707 8182 1.139734 CACGCGCAGTACCTCTGAT 59.860 57.895 5.73 0.00 46.27 2.90
6708 8183 0.867753 CACGCGCAGTACCTCTGATC 60.868 60.000 5.73 0.00 46.27 2.92
6709 8184 1.032657 ACGCGCAGTACCTCTGATCT 61.033 55.000 5.73 0.00 46.27 2.75
6710 8185 0.945099 CGCGCAGTACCTCTGATCTA 59.055 55.000 8.75 0.00 46.27 1.98
6711 8186 1.069568 CGCGCAGTACCTCTGATCTAG 60.070 57.143 8.75 0.00 46.27 2.43
6712 8187 1.950909 GCGCAGTACCTCTGATCTAGT 59.049 52.381 0.30 0.00 46.27 2.57
6713 8188 2.031508 GCGCAGTACCTCTGATCTAGTC 60.032 54.545 0.30 0.00 46.27 2.59
6714 8189 2.550606 CGCAGTACCTCTGATCTAGTCC 59.449 54.545 0.00 0.00 46.27 3.85
6733 8208 4.941873 AGTCCGAATCTCCATTGGTAAAAC 59.058 41.667 1.86 0.00 0.00 2.43
6786 8264 3.641017 GCTTTGTGCTTCCTCTCCT 57.359 52.632 0.00 0.00 38.95 3.69
6787 8265 1.902938 GCTTTGTGCTTCCTCTCCTT 58.097 50.000 0.00 0.00 38.95 3.36
6789 8267 2.856222 CTTTGTGCTTCCTCTCCTTGT 58.144 47.619 0.00 0.00 0.00 3.16
6790 8268 2.260844 TTGTGCTTCCTCTCCTTGTG 57.739 50.000 0.00 0.00 0.00 3.33
6791 8269 0.397941 TGTGCTTCCTCTCCTTGTGG 59.602 55.000 0.00 0.00 0.00 4.17
6792 8270 0.398318 GTGCTTCCTCTCCTTGTGGT 59.602 55.000 0.00 0.00 34.23 4.16
6871 8375 3.290710 CTGGGAAAGAGAGAGAGAGAGG 58.709 54.545 0.00 0.00 0.00 3.69
6928 8480 9.645128 TTTATTTAGTAGGGTTTAATTAGGGCC 57.355 33.333 0.00 0.00 0.00 5.80
6929 8481 5.651612 TTAGTAGGGTTTAATTAGGGCCC 57.348 43.478 16.46 16.46 39.60 5.80
6930 8482 3.476953 AGTAGGGTTTAATTAGGGCCCA 58.523 45.455 27.56 3.72 41.67 5.36
6943 8495 4.512914 GCCCAGCCCAGGTGATCC 62.513 72.222 0.00 0.00 32.22 3.36
6944 8496 2.693864 CCCAGCCCAGGTGATCCT 60.694 66.667 0.00 0.00 46.37 3.24
7058 8636 9.595823 GCAAGACATCTTACTATTTTAGTACCA 57.404 33.333 0.00 0.00 40.74 3.25
7062 8640 8.943909 ACATCTTACTATTTTAGTACCAGTGC 57.056 34.615 0.00 0.00 40.74 4.40
7063 8641 8.759782 ACATCTTACTATTTTAGTACCAGTGCT 58.240 33.333 0.00 0.00 40.74 4.40
7064 8642 9.250624 CATCTTACTATTTTAGTACCAGTGCTC 57.749 37.037 0.00 0.00 40.74 4.26
7065 8643 8.591114 TCTTACTATTTTAGTACCAGTGCTCT 57.409 34.615 0.00 0.00 40.74 4.09
7079 8657 9.595823 GTACCAGTGCTCTTTTATTTATCTGTA 57.404 33.333 0.00 0.00 0.00 2.74
7080 8658 8.494016 ACCAGTGCTCTTTTATTTATCTGTAC 57.506 34.615 0.00 0.00 0.00 2.90
7081 8659 8.100791 ACCAGTGCTCTTTTATTTATCTGTACA 58.899 33.333 0.00 0.00 0.00 2.90
7105 8706 9.139174 ACATTTGTTTATTTATGCAGTGCTAAC 57.861 29.630 17.60 9.21 0.00 2.34
7258 8918 6.830324 AGAAATCATAAGCACATACCACATGT 59.170 34.615 0.00 0.00 0.00 3.21
7259 8919 7.992608 AGAAATCATAAGCACATACCACATGTA 59.007 33.333 0.00 0.00 0.00 2.29
7278 8938 6.542370 ACATGTATACAACTGCTACCCAAATC 59.458 38.462 10.14 0.00 0.00 2.17
7330 8990 1.885871 GCAAACTGGATGCACCCTC 59.114 57.895 0.00 0.00 43.29 4.30
7334 8994 2.185310 AACTGGATGCACCCTCGTCC 62.185 60.000 0.00 0.00 41.46 4.79
7350 9010 2.280524 CCCGCGGTGTTCTTGACA 60.281 61.111 26.12 0.00 35.42 3.58
7401 9062 5.160607 AGTGATCTAAAACATGACCGGAA 57.839 39.130 9.46 0.00 0.00 4.30
7462 9125 2.286365 TTGTGGAGGGTTGGATCAAC 57.714 50.000 0.00 2.46 42.89 3.18
7469 9132 3.012518 GAGGGTTGGATCAACATGTGAG 58.987 50.000 0.00 0.00 45.11 3.51
7470 9133 2.644299 AGGGTTGGATCAACATGTGAGA 59.356 45.455 0.00 0.68 45.11 3.27
7513 9176 6.672218 TCTTAGATCACCCCTCTTCACATTTA 59.328 38.462 0.00 0.00 0.00 1.40
7524 9187 5.055265 TCTTCACATTTACCAAGGGTTGA 57.945 39.130 0.00 0.00 37.09 3.18
7525 9188 5.640147 TCTTCACATTTACCAAGGGTTGAT 58.360 37.500 0.00 0.00 37.09 2.57
7526 9189 6.074648 TCTTCACATTTACCAAGGGTTGATT 58.925 36.000 0.00 0.00 37.09 2.57
7528 9191 6.095432 TCACATTTACCAAGGGTTGATTTG 57.905 37.500 0.00 0.00 37.09 2.32
7529 9192 4.690280 CACATTTACCAAGGGTTGATTTGC 59.310 41.667 0.00 0.00 37.09 3.68
7530 9193 4.346418 ACATTTACCAAGGGTTGATTTGCA 59.654 37.500 0.00 0.00 37.09 4.08
7531 9194 5.012975 ACATTTACCAAGGGTTGATTTGCAT 59.987 36.000 0.00 0.00 37.09 3.96
7573 9249 1.607628 GATGGCCTCACATGCTGAATC 59.392 52.381 3.32 0.00 0.00 2.52
7581 9257 2.686405 TCACATGCTGAATCTGCATTCC 59.314 45.455 22.17 0.00 44.37 3.01
7601 9277 1.197721 CGTAACTTACCTGACGACGGT 59.802 52.381 0.00 0.00 37.50 4.83
7626 9302 3.860641 TCAATGTAGTGCACACATCGAT 58.139 40.909 25.08 13.68 40.86 3.59
7676 9352 0.737367 CGGCTCATCGAACAGCAGAA 60.737 55.000 17.92 0.00 37.38 3.02
7695 9371 0.461961 AGCGTAGGGAGACAGAATGC 59.538 55.000 0.00 0.00 42.53 3.56
7796 9472 2.159462 GCTTCGCTGGATTTCCTTGAAG 60.159 50.000 15.56 15.56 39.68 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 7.009448 ACACATATGCTTTGAATTTTGCATACG 59.991 33.333 1.58 3.94 46.60 3.06
92 94 8.188531 ACACATATGCTTTGAATTTTGCATAC 57.811 30.769 1.58 0.00 46.60 2.39
116 118 5.088739 CGTATTGACAAGAATGCTTTGGAC 58.911 41.667 0.00 0.00 30.14 4.02
490 652 2.294074 TGCACCACCAGTTACAGAAAC 58.706 47.619 0.00 0.00 38.46 2.78
780 984 4.838111 GCCGCAAATTTGACAATTTTAACG 59.162 37.500 22.31 10.78 40.09 3.18
842 1048 3.025262 GGCTAAGCTACCAGTGTCTACT 58.975 50.000 0.00 0.00 37.75 2.57
843 1049 2.223525 CGGCTAAGCTACCAGTGTCTAC 60.224 54.545 0.00 0.00 0.00 2.59
844 1050 2.022195 CGGCTAAGCTACCAGTGTCTA 58.978 52.381 0.00 0.00 0.00 2.59
846 1052 0.806492 GCGGCTAAGCTACCAGTGTC 60.806 60.000 0.00 0.00 0.00 3.67
847 1053 1.218316 GCGGCTAAGCTACCAGTGT 59.782 57.895 0.00 0.00 0.00 3.55
848 1054 1.878522 CGCGGCTAAGCTACCAGTG 60.879 63.158 0.00 0.00 34.40 3.66
850 1056 1.589196 GACGCGGCTAAGCTACCAG 60.589 63.158 12.47 0.00 34.40 4.00
851 1057 2.050350 AGACGCGGCTAAGCTACCA 61.050 57.895 16.12 0.00 34.40 3.25
910 1124 2.295472 GATGGCGTGCTCTGCTCTCT 62.295 60.000 0.00 0.00 0.00 3.10
911 1125 1.882167 GATGGCGTGCTCTGCTCTC 60.882 63.158 0.00 0.00 0.00 3.20
912 1126 2.186384 GATGGCGTGCTCTGCTCT 59.814 61.111 0.00 0.00 0.00 4.09
913 1127 2.021068 TAGGATGGCGTGCTCTGCTC 62.021 60.000 3.21 0.00 0.00 4.26
926 1177 4.294347 AGGAAAGGAGAGAAGGTAGGATG 58.706 47.826 0.00 0.00 0.00 3.51
927 1178 4.635558 AGGAAAGGAGAGAAGGTAGGAT 57.364 45.455 0.00 0.00 0.00 3.24
928 1179 4.097418 CAAGGAAAGGAGAGAAGGTAGGA 58.903 47.826 0.00 0.00 0.00 2.94
931 1182 3.521727 AGCAAGGAAAGGAGAGAAGGTA 58.478 45.455 0.00 0.00 0.00 3.08
932 1183 2.343625 AGCAAGGAAAGGAGAGAAGGT 58.656 47.619 0.00 0.00 0.00 3.50
937 1188 5.197451 TCTACTCTAGCAAGGAAAGGAGAG 58.803 45.833 0.00 0.00 37.14 3.20
939 1190 4.953579 ACTCTACTCTAGCAAGGAAAGGAG 59.046 45.833 0.00 0.00 0.00 3.69
954 1205 9.134734 GCACTTTTATATATGCTCACTCTACTC 57.865 37.037 0.00 0.00 35.16 2.59
955 1206 8.642432 TGCACTTTTATATATGCTCACTCTACT 58.358 33.333 7.39 0.00 38.90 2.57
957 1208 7.600375 GCTGCACTTTTATATATGCTCACTCTA 59.400 37.037 7.39 0.00 38.90 2.43
958 1209 6.426328 GCTGCACTTTTATATATGCTCACTCT 59.574 38.462 7.39 0.00 38.90 3.24
959 1210 6.203530 TGCTGCACTTTTATATATGCTCACTC 59.796 38.462 0.00 0.00 38.90 3.51
960 1211 6.017605 GTGCTGCACTTTTATATATGCTCACT 60.018 38.462 24.68 0.00 38.26 3.41
961 1212 6.017605 AGTGCTGCACTTTTATATATGCTCAC 60.018 38.462 28.49 15.92 42.59 3.51
962 1213 6.017687 CAGTGCTGCACTTTTATATATGCTCA 60.018 38.462 31.20 3.69 42.59 4.26
963 1214 6.369005 CAGTGCTGCACTTTTATATATGCTC 58.631 40.000 31.20 0.00 42.59 4.26
982 1233 0.171455 AGTACTCTACTGCGCAGTGC 59.829 55.000 44.69 26.32 42.52 4.40
996 1247 1.551452 GAGCTGTGGAGTGGAGTACT 58.449 55.000 0.00 0.00 44.02 2.73
997 1248 0.533032 GGAGCTGTGGAGTGGAGTAC 59.467 60.000 0.00 0.00 0.00 2.73
998 1249 0.114364 TGGAGCTGTGGAGTGGAGTA 59.886 55.000 0.00 0.00 0.00 2.59
999 1250 0.546267 ATGGAGCTGTGGAGTGGAGT 60.546 55.000 0.00 0.00 0.00 3.85
1000 1251 0.177604 GATGGAGCTGTGGAGTGGAG 59.822 60.000 0.00 0.00 0.00 3.86
1001 1252 0.252421 AGATGGAGCTGTGGAGTGGA 60.252 55.000 0.00 0.00 0.00 4.02
1002 1253 1.137872 GTAGATGGAGCTGTGGAGTGG 59.862 57.143 0.00 0.00 0.00 4.00
1003 1254 2.100584 GAGTAGATGGAGCTGTGGAGTG 59.899 54.545 0.00 0.00 0.00 3.51
1004 1255 2.291865 TGAGTAGATGGAGCTGTGGAGT 60.292 50.000 0.00 0.00 0.00 3.85
1005 1256 2.382882 TGAGTAGATGGAGCTGTGGAG 58.617 52.381 0.00 0.00 0.00 3.86
1006 1257 2.532250 TGAGTAGATGGAGCTGTGGA 57.468 50.000 0.00 0.00 0.00 4.02
1137 1407 3.687125 TCTCCTCTTCTCGCTACTTTCA 58.313 45.455 0.00 0.00 0.00 2.69
1147 1417 1.111277 GGTCAGCCTCTCCTCTTCTC 58.889 60.000 0.00 0.00 0.00 2.87
1175 1445 2.063015 TTGGCTTCCCTTCGCTTCCA 62.063 55.000 0.00 0.00 0.00 3.53
1181 1451 0.107945 CCTCTCTTGGCTTCCCTTCG 60.108 60.000 0.00 0.00 0.00 3.79
1189 1459 2.041928 CCCCTCCCTCTCTTGGCT 59.958 66.667 0.00 0.00 0.00 4.75
1190 1460 3.093172 CCCCCTCCCTCTCTTGGC 61.093 72.222 0.00 0.00 0.00 4.52
1192 1462 0.043334 TTCTCCCCCTCCCTCTCTTG 59.957 60.000 0.00 0.00 0.00 3.02
1305 1578 4.489771 GGGTCCCTGCATGTCGGG 62.490 72.222 13.49 13.49 42.05 5.14
1375 1649 2.559998 ACAAGCAAAACCGACAACTG 57.440 45.000 0.00 0.00 0.00 3.16
1428 1705 2.033065 CGTACTGTACGTGCCTAGCTAG 60.033 54.545 27.27 14.20 46.41 3.42
1430 1707 0.731417 CGTACTGTACGTGCCTAGCT 59.269 55.000 27.27 0.00 46.41 3.32
1431 1708 3.231222 CGTACTGTACGTGCCTAGC 57.769 57.895 27.27 0.00 46.41 3.42
1446 1723 6.203530 CAGATTAAGGAGGATGTACGTACGTA 59.796 42.308 23.60 23.60 0.00 3.57
1447 1724 5.008415 CAGATTAAGGAGGATGTACGTACGT 59.992 44.000 25.98 25.98 0.00 3.57
1448 1725 5.450171 CAGATTAAGGAGGATGTACGTACG 58.550 45.833 20.18 15.01 0.00 3.67
1456 1845 1.417890 ACCGGCAGATTAAGGAGGATG 59.582 52.381 0.00 0.00 0.00 3.51
1489 1878 5.668471 TCAATGAACTTGAACCAAAATGCA 58.332 33.333 0.00 0.00 40.92 3.96
1490 1879 6.790285 ATCAATGAACTTGAACCAAAATGC 57.210 33.333 0.00 0.00 46.62 3.56
1491 1880 9.048446 AGAAATCAATGAACTTGAACCAAAATG 57.952 29.630 0.00 0.00 46.62 2.32
1492 1881 9.617523 AAGAAATCAATGAACTTGAACCAAAAT 57.382 25.926 0.00 0.00 46.62 1.82
1529 1918 2.852449 AGAGAGAGATGGAGAGAGTGGT 59.148 50.000 0.00 0.00 0.00 4.16
1530 1919 3.582998 AGAGAGAGATGGAGAGAGTGG 57.417 52.381 0.00 0.00 0.00 4.00
1532 1921 3.788142 AGGAAGAGAGAGATGGAGAGAGT 59.212 47.826 0.00 0.00 0.00 3.24
1534 1923 4.229353 TCAAGGAAGAGAGAGATGGAGAGA 59.771 45.833 0.00 0.00 0.00 3.10
1536 1925 4.599720 TCAAGGAAGAGAGAGATGGAGA 57.400 45.455 0.00 0.00 0.00 3.71
1542 1931 5.047448 CACTTCACATCAAGGAAGAGAGAGA 60.047 44.000 8.25 0.00 42.39 3.10
1551 1941 3.631686 CCAACAACACTTCACATCAAGGA 59.368 43.478 0.00 0.00 0.00 3.36
1557 1947 4.104383 AGGATCCAACAACACTTCACAT 57.896 40.909 15.82 0.00 0.00 3.21
1564 1954 1.956477 AGTGCAAGGATCCAACAACAC 59.044 47.619 15.82 13.90 0.00 3.32
1586 1976 3.964688 TGAACAAGTTAGGGACAGACAGA 59.035 43.478 0.00 0.00 0.00 3.41
1642 2076 2.027385 TGTCTGTGAGATGGATCGAGG 58.973 52.381 0.00 0.00 0.00 4.63
1649 2083 3.056250 ACTTGCTAGTGTCTGTGAGATGG 60.056 47.826 0.00 0.00 31.99 3.51
1650 2084 4.185467 ACTTGCTAGTGTCTGTGAGATG 57.815 45.455 0.00 0.00 31.99 2.90
1656 2090 4.767928 AGCTAGTAACTTGCTAGTGTCTGT 59.232 41.667 13.56 0.00 40.37 3.41
1657 2091 5.098893 CAGCTAGTAACTTGCTAGTGTCTG 58.901 45.833 13.56 9.45 40.20 3.51
1658 2092 4.381079 GCAGCTAGTAACTTGCTAGTGTCT 60.381 45.833 13.56 6.21 40.20 3.41
1659 2093 3.860536 GCAGCTAGTAACTTGCTAGTGTC 59.139 47.826 13.56 0.00 40.20 3.67
1660 2094 3.511934 AGCAGCTAGTAACTTGCTAGTGT 59.488 43.478 13.56 1.87 44.47 3.55
1661 2095 4.116747 AGCAGCTAGTAACTTGCTAGTG 57.883 45.455 13.56 11.46 44.47 2.74
1662 2096 4.951094 AGTAGCAGCTAGTAACTTGCTAGT 59.049 41.667 8.12 7.94 46.37 2.57
1663 2097 5.508200 AGTAGCAGCTAGTAACTTGCTAG 57.492 43.478 8.12 9.04 46.37 3.42
1664 2098 6.120905 AGTAGTAGCAGCTAGTAACTTGCTA 58.879 40.000 17.19 5.45 44.47 3.49
1666 2100 5.251601 AGTAGTAGCAGCTAGTAACTTGC 57.748 43.478 17.19 6.22 36.83 4.01
1667 2101 7.066043 AGTGTAGTAGTAGCAGCTAGTAACTTG 59.934 40.741 17.19 0.00 31.09 3.16
1668 2102 7.111466 AGTGTAGTAGTAGCAGCTAGTAACTT 58.889 38.462 17.19 9.58 31.09 2.66
1669 2103 6.652053 AGTGTAGTAGTAGCAGCTAGTAACT 58.348 40.000 17.19 17.02 31.09 2.24
1670 2104 6.923928 AGTGTAGTAGTAGCAGCTAGTAAC 57.076 41.667 17.19 13.45 31.09 2.50
1681 2115 5.122869 TCGTTTGGTGCTAGTGTAGTAGTAG 59.877 44.000 0.00 0.00 35.73 2.57
1682 2116 5.003160 TCGTTTGGTGCTAGTGTAGTAGTA 58.997 41.667 0.00 0.00 0.00 1.82
1683 2117 3.822735 TCGTTTGGTGCTAGTGTAGTAGT 59.177 43.478 0.00 0.00 0.00 2.73
1684 2118 4.430137 TCGTTTGGTGCTAGTGTAGTAG 57.570 45.455 0.00 0.00 0.00 2.57
1685 2119 4.520111 TCTTCGTTTGGTGCTAGTGTAGTA 59.480 41.667 0.00 0.00 0.00 1.82
1686 2120 3.319972 TCTTCGTTTGGTGCTAGTGTAGT 59.680 43.478 0.00 0.00 0.00 2.73
1687 2121 3.909430 TCTTCGTTTGGTGCTAGTGTAG 58.091 45.455 0.00 0.00 0.00 2.74
1688 2122 4.202182 ACTTCTTCGTTTGGTGCTAGTGTA 60.202 41.667 0.00 0.00 0.00 2.90
1689 2123 2.902705 TCTTCGTTTGGTGCTAGTGT 57.097 45.000 0.00 0.00 0.00 3.55
1690 2124 3.131396 ACTTCTTCGTTTGGTGCTAGTG 58.869 45.455 0.00 0.00 0.00 2.74
1691 2125 3.391049 GACTTCTTCGTTTGGTGCTAGT 58.609 45.455 0.00 0.00 0.00 2.57
1692 2126 2.408704 CGACTTCTTCGTTTGGTGCTAG 59.591 50.000 0.00 0.00 43.24 3.42
1693 2127 2.400399 CGACTTCTTCGTTTGGTGCTA 58.600 47.619 0.00 0.00 43.24 3.49
1694 2128 1.217882 CGACTTCTTCGTTTGGTGCT 58.782 50.000 0.00 0.00 43.24 4.40
1695 2129 3.729004 CGACTTCTTCGTTTGGTGC 57.271 52.632 0.00 0.00 43.24 5.01
1704 2138 2.568912 CGCGGCGATCGACTTCTTC 61.569 63.158 21.57 0.00 42.43 2.87
1705 2139 2.579787 CGCGGCGATCGACTTCTT 60.580 61.111 21.57 0.00 42.43 2.52
1706 2140 3.506096 TCGCGGCGATCGACTTCT 61.506 61.111 22.69 0.00 42.43 2.85
1713 2147 3.838795 GTGTGTGTCGCGGCGATC 61.839 66.667 28.95 22.73 38.42 3.69
1720 2154 1.082169 TACCGTACGTGTGTGTCGC 60.082 57.895 15.21 0.00 0.00 5.19
1721 2155 1.054348 CGTACCGTACGTGTGTGTCG 61.054 60.000 20.61 10.38 46.41 4.35
1722 2156 2.699910 CGTACCGTACGTGTGTGTC 58.300 57.895 20.61 2.99 46.41 3.67
1736 2170 1.274596 CTTCCATGTGCGTACCGTAC 58.725 55.000 0.00 0.00 42.37 3.67
1741 2175 1.024579 CACCCCTTCCATGTGCGTAC 61.025 60.000 0.00 0.00 0.00 3.67
1742 2176 1.298340 CACCCCTTCCATGTGCGTA 59.702 57.895 0.00 0.00 0.00 4.42
1743 2177 2.034066 CACCCCTTCCATGTGCGT 59.966 61.111 0.00 0.00 0.00 5.24
1744 2178 3.443045 GCACCCCTTCCATGTGCG 61.443 66.667 0.00 0.00 44.95 5.34
1750 2184 0.467290 GTGTTTCAGCACCCCTTCCA 60.467 55.000 0.00 0.00 33.53 3.53
1751 2185 2.341452 GTGTTTCAGCACCCCTTCC 58.659 57.895 0.00 0.00 33.53 3.46
1758 2192 3.030652 CCGTGGGTGTTTCAGCAC 58.969 61.111 1.62 0.00 38.56 4.40
1759 2193 2.904866 GCCGTGGGTGTTTCAGCA 60.905 61.111 1.62 0.00 33.07 4.41
1760 2194 3.670377 GGCCGTGGGTGTTTCAGC 61.670 66.667 0.00 0.00 0.00 4.26
1761 2195 1.603455 ATGGCCGTGGGTGTTTCAG 60.603 57.895 0.00 0.00 0.00 3.02
1764 2198 2.600173 CCATGGCCGTGGGTGTTT 60.600 61.111 33.41 0.00 35.55 2.83
1839 2281 1.871039 ACAGACACCGTTCCAAATTCG 59.129 47.619 0.00 0.00 0.00 3.34
1862 2308 1.274708 TGGAGAGGAGAGGAGAGGAGA 60.275 57.143 0.00 0.00 0.00 3.71
1867 2313 1.675007 TGAGTGGAGAGGAGAGGAGA 58.325 55.000 0.00 0.00 0.00 3.71
1868 2314 2.378038 CTTGAGTGGAGAGGAGAGGAG 58.622 57.143 0.00 0.00 0.00 3.69
1869 2315 1.006519 CCTTGAGTGGAGAGGAGAGGA 59.993 57.143 0.00 0.00 32.11 3.71
1870 2316 1.272985 ACCTTGAGTGGAGAGGAGAGG 60.273 57.143 0.00 0.00 34.61 3.69
1871 2317 2.099405 GACCTTGAGTGGAGAGGAGAG 58.901 57.143 0.00 0.00 34.61 3.20
1872 2318 1.713647 AGACCTTGAGTGGAGAGGAGA 59.286 52.381 0.00 0.00 34.61 3.71
1873 2319 2.099405 GAGACCTTGAGTGGAGAGGAG 58.901 57.143 0.00 0.00 34.61 3.69
1874 2320 1.429299 TGAGACCTTGAGTGGAGAGGA 59.571 52.381 0.00 0.00 34.61 3.71
1875 2321 1.930251 TGAGACCTTGAGTGGAGAGG 58.070 55.000 0.00 0.00 36.62 3.69
1876 2322 2.353605 GCTTGAGACCTTGAGTGGAGAG 60.354 54.545 0.00 0.00 0.00 3.20
1877 2323 1.620819 GCTTGAGACCTTGAGTGGAGA 59.379 52.381 0.00 0.00 0.00 3.71
1878 2324 1.338579 GGCTTGAGACCTTGAGTGGAG 60.339 57.143 0.00 0.00 0.00 3.86
1879 2325 0.687354 GGCTTGAGACCTTGAGTGGA 59.313 55.000 0.00 0.00 0.00 4.02
1880 2326 0.397941 TGGCTTGAGACCTTGAGTGG 59.602 55.000 0.00 0.00 0.00 4.00
1881 2327 1.876156 GTTGGCTTGAGACCTTGAGTG 59.124 52.381 0.00 0.00 0.00 3.51
1882 2328 1.490490 TGTTGGCTTGAGACCTTGAGT 59.510 47.619 0.00 0.00 0.00 3.41
1883 2329 2.260844 TGTTGGCTTGAGACCTTGAG 57.739 50.000 0.00 0.00 0.00 3.02
1884 2330 2.957402 ATGTTGGCTTGAGACCTTGA 57.043 45.000 0.00 0.00 0.00 3.02
1885 2331 2.229784 GGAATGTTGGCTTGAGACCTTG 59.770 50.000 0.00 0.00 0.00 3.61
1886 2332 2.519013 GGAATGTTGGCTTGAGACCTT 58.481 47.619 0.00 0.00 0.00 3.50
1887 2333 1.611673 CGGAATGTTGGCTTGAGACCT 60.612 52.381 0.00 0.00 0.00 3.85
1888 2334 0.804989 CGGAATGTTGGCTTGAGACC 59.195 55.000 0.00 0.00 0.00 3.85
1889 2335 0.169009 GCGGAATGTTGGCTTGAGAC 59.831 55.000 0.00 0.00 0.00 3.36
1890 2336 0.250684 TGCGGAATGTTGGCTTGAGA 60.251 50.000 0.00 0.00 0.00 3.27
1891 2337 0.597568 TTGCGGAATGTTGGCTTGAG 59.402 50.000 0.00 0.00 0.00 3.02
1892 2338 1.035923 TTTGCGGAATGTTGGCTTGA 58.964 45.000 0.00 0.00 0.00 3.02
1893 2339 1.863267 TTTTGCGGAATGTTGGCTTG 58.137 45.000 0.00 0.00 0.00 4.01
1894 2340 2.611225 TTTTTGCGGAATGTTGGCTT 57.389 40.000 0.00 0.00 0.00 4.35
1917 2363 3.493176 GCATGTTGGCTTGAGACCTTTTT 60.493 43.478 0.00 0.00 0.00 1.94
1918 2364 2.036346 GCATGTTGGCTTGAGACCTTTT 59.964 45.455 0.00 0.00 0.00 2.27
1919 2365 1.615392 GCATGTTGGCTTGAGACCTTT 59.385 47.619 0.00 0.00 0.00 3.11
1920 2366 1.251251 GCATGTTGGCTTGAGACCTT 58.749 50.000 0.00 0.00 0.00 3.50
1921 2367 0.111061 TGCATGTTGGCTTGAGACCT 59.889 50.000 0.00 0.00 34.04 3.85
1922 2368 1.135199 CATGCATGTTGGCTTGAGACC 60.135 52.381 18.91 0.00 40.31 3.85
1923 2369 1.814394 TCATGCATGTTGGCTTGAGAC 59.186 47.619 25.43 0.00 41.34 3.36
1951 2397 7.288560 AGCTAGCTACATGTTTACTCCTACTA 58.711 38.462 17.69 0.00 0.00 1.82
2009 2468 4.305539 AGACCAACATCATCATCAACCA 57.694 40.909 0.00 0.00 0.00 3.67
2012 2471 5.045651 ACCACTAGACCAACATCATCATCAA 60.046 40.000 0.00 0.00 0.00 2.57
2114 2590 0.177604 CCCTGCTGGATGTCTGTCTC 59.822 60.000 11.88 0.00 35.39 3.36
2176 2662 3.423154 GAAAGCACAGACCGGCCG 61.423 66.667 21.04 21.04 0.00 6.13
2177 2663 3.056328 GGAAAGCACAGACCGGCC 61.056 66.667 0.00 0.00 0.00 6.13
2178 2664 3.423154 CGGAAAGCACAGACCGGC 61.423 66.667 0.00 0.00 41.41 6.13
2179 2665 2.027625 GTCGGAAAGCACAGACCGG 61.028 63.158 0.00 0.00 44.57 5.28
2180 2666 2.027625 GGTCGGAAAGCACAGACCG 61.028 63.158 10.60 0.00 42.81 4.79
2181 2667 2.027625 CGGTCGGAAAGCACAGACC 61.028 63.158 14.15 14.15 46.29 3.85
2182 2668 1.282930 GACGGTCGGAAAGCACAGAC 61.283 60.000 0.00 0.00 35.05 3.51
2234 2720 3.329542 TAGCTTGCTTGCTCCCCGG 62.330 63.158 7.26 0.00 42.97 5.73
2267 2754 4.203226 CCCTCATCGCTATAGCTCTCATA 58.797 47.826 21.98 2.71 39.32 2.15
2298 2785 3.812262 TGGATCATCACTATGCAAGGTG 58.188 45.455 13.92 13.92 32.76 4.00
2299 2786 3.713248 TCTGGATCATCACTATGCAAGGT 59.287 43.478 0.00 0.00 32.76 3.50
2345 2843 1.690893 AGATAGTCTCATGCACGCCAT 59.309 47.619 0.00 0.00 33.39 4.40
2346 2844 1.114627 AGATAGTCTCATGCACGCCA 58.885 50.000 0.00 0.00 0.00 5.69
2347 2845 2.131183 GAAGATAGTCTCATGCACGCC 58.869 52.381 0.00 0.00 0.00 5.68
2348 2846 3.090952 AGAAGATAGTCTCATGCACGC 57.909 47.619 0.00 0.00 0.00 5.34
2349 2847 4.930963 AGAAGAAGATAGTCTCATGCACG 58.069 43.478 0.00 0.00 0.00 5.34
2350 2848 5.288804 GGAGAAGAAGATAGTCTCATGCAC 58.711 45.833 0.00 0.00 39.69 4.57
2351 2849 4.037327 CGGAGAAGAAGATAGTCTCATGCA 59.963 45.833 0.00 0.00 39.69 3.96
2352 2850 4.545610 CGGAGAAGAAGATAGTCTCATGC 58.454 47.826 2.64 0.00 39.69 4.06
2353 2851 4.582656 ACCGGAGAAGAAGATAGTCTCATG 59.417 45.833 9.46 0.00 39.69 3.07
2354 2852 4.798882 ACCGGAGAAGAAGATAGTCTCAT 58.201 43.478 9.46 0.00 39.69 2.90
2355 2853 4.200874 GACCGGAGAAGAAGATAGTCTCA 58.799 47.826 9.46 0.00 39.69 3.27
2356 2854 3.566742 GGACCGGAGAAGAAGATAGTCTC 59.433 52.174 9.46 0.00 37.63 3.36
2357 2855 3.203487 AGGACCGGAGAAGAAGATAGTCT 59.797 47.826 9.46 0.00 0.00 3.24
2358 2856 3.316868 CAGGACCGGAGAAGAAGATAGTC 59.683 52.174 9.46 0.00 0.00 2.59
2359 2857 3.292460 CAGGACCGGAGAAGAAGATAGT 58.708 50.000 9.46 0.00 0.00 2.12
2384 2882 1.281287 CAGAGGCATAGGCATAGGCAT 59.719 52.381 17.33 10.01 40.47 4.40
2388 2886 0.982704 AGGCAGAGGCATAGGCATAG 59.017 55.000 0.15 0.00 43.71 2.23
2389 2887 0.979665 GAGGCAGAGGCATAGGCATA 59.020 55.000 0.15 0.00 43.71 3.14
2390 2888 0.767446 AGAGGCAGAGGCATAGGCAT 60.767 55.000 0.15 0.00 43.71 4.40
2392 2890 1.071128 CAGAGGCAGAGGCATAGGC 59.929 63.158 0.00 0.00 43.71 3.93
2396 2894 2.691623 AGGCAGAGGCAGAGGCAT 60.692 61.111 0.00 0.00 43.71 4.40
2397 2895 3.714001 CAGGCAGAGGCAGAGGCA 61.714 66.667 0.00 0.00 43.71 4.75
2398 2896 4.486503 CCAGGCAGAGGCAGAGGC 62.487 72.222 0.00 0.00 43.71 4.70
2399 2897 2.600729 AACCAGGCAGAGGCAGAGG 61.601 63.158 0.00 0.00 43.71 3.69
2400 2898 1.376942 CAACCAGGCAGAGGCAGAG 60.377 63.158 0.00 0.00 43.71 3.35
2401 2899 2.752358 CAACCAGGCAGAGGCAGA 59.248 61.111 0.00 0.00 43.71 4.26
2402 2900 2.360852 CCAACCAGGCAGAGGCAG 60.361 66.667 0.00 0.00 43.71 4.85
2403 2901 3.177884 ACCAACCAGGCAGAGGCA 61.178 61.111 0.00 0.00 43.71 4.75
2404 2902 2.360475 GACCAACCAGGCAGAGGC 60.360 66.667 0.00 0.00 43.14 4.70
2405 2903 2.227036 AGGACCAACCAGGCAGAGG 61.227 63.158 0.00 0.00 43.14 3.69
2427 2925 1.154197 CACAGTCTCATGCACACCAG 58.846 55.000 0.00 0.00 0.00 4.00
2428 2926 0.886043 GCACAGTCTCATGCACACCA 60.886 55.000 0.00 0.00 41.65 4.17
2429 2927 1.871772 GCACAGTCTCATGCACACC 59.128 57.895 0.00 0.00 41.65 4.16
2430 2928 1.224069 ACGCACAGTCTCATGCACAC 61.224 55.000 0.00 0.00 42.17 3.82
2431 2929 1.069596 ACGCACAGTCTCATGCACA 59.930 52.632 0.00 0.00 42.17 4.57
2432 2930 1.224069 ACACGCACAGTCTCATGCAC 61.224 55.000 0.00 0.00 42.17 4.57
2458 2960 3.295273 TGCCTCGGGATCGGATCG 61.295 66.667 11.62 2.52 36.95 3.69
2459 2961 2.340443 GTGCCTCGGGATCGGATC 59.660 66.667 9.54 9.54 36.95 3.36
2460 2962 3.606662 CGTGCCTCGGGATCGGAT 61.607 66.667 0.00 0.00 36.95 4.18
2472 2974 2.813179 GATCGGACATGTGCGTGCC 61.813 63.158 33.95 21.60 44.84 5.01
2487 2989 1.233285 GGTGCGCAGATGGATGGATC 61.233 60.000 12.22 0.00 0.00 3.36
2505 3022 1.138247 GACCGTGTAGCCGTGTAGG 59.862 63.158 0.00 0.00 44.97 3.18
2537 3054 5.733154 AGGGACAAGCATGGTCCATATATAT 59.267 40.000 17.97 0.00 38.93 0.86
2538 3055 5.045651 CAGGGACAAGCATGGTCCATATATA 60.046 44.000 17.97 0.00 38.93 0.86
2539 3056 3.918912 AGGGACAAGCATGGTCCATATAT 59.081 43.478 17.97 0.00 38.93 0.86
2540 3057 3.072915 CAGGGACAAGCATGGTCCATATA 59.927 47.826 17.97 0.00 38.93 0.86
2570 3087 3.912496 TGCATGCATGTAGGAGTAGTT 57.088 42.857 26.79 0.00 0.00 2.24
2607 3124 7.497579 CCATATGTAACTGTAACTGTAATGCCA 59.502 37.037 1.24 0.00 0.00 4.92
2654 3277 1.761500 TTGAGAGAGGCTGCAGTGCA 61.761 55.000 18.58 18.58 36.92 4.57
2655 3278 1.004080 TTGAGAGAGGCTGCAGTGC 60.004 57.895 16.64 8.58 0.00 4.40
2656 3279 0.391395 CCTTGAGAGAGGCTGCAGTG 60.391 60.000 16.64 0.00 0.00 3.66
2657 3280 0.835543 ACCTTGAGAGAGGCTGCAGT 60.836 55.000 16.64 0.00 40.65 4.40
2658 3281 1.136695 CTACCTTGAGAGAGGCTGCAG 59.863 57.143 10.11 10.11 40.65 4.41
2679 3302 2.370189 ACAGGGTAGATAGATTGCAGCC 59.630 50.000 0.00 0.00 0.00 4.85
2717 3342 2.427812 GTTGAAGAAAAACCAACCCGGA 59.572 45.455 0.73 0.00 38.63 5.14
2718 3343 2.816689 GTTGAAGAAAAACCAACCCGG 58.183 47.619 0.00 0.00 42.50 5.73
2775 3503 5.687285 CCGATTAAAGGTACGTAACGCTTAT 59.313 40.000 4.68 0.00 0.00 1.73
2788 3517 2.092968 TGCAGCTGATCCGATTAAAGGT 60.093 45.455 20.43 0.00 0.00 3.50
2809 3538 2.475371 AAAGCCGTGGATGAGCAGCT 62.475 55.000 0.00 0.00 0.00 4.24
2830 3565 0.319383 GCTGATGAGTGGCGATCGAT 60.319 55.000 21.57 0.00 0.00 3.59
2831 3566 1.066422 GCTGATGAGTGGCGATCGA 59.934 57.895 21.57 0.00 0.00 3.59
2832 3567 3.622756 GCTGATGAGTGGCGATCG 58.377 61.111 11.69 11.69 0.00 3.69
2861 3596 9.331106 GTATTCTGATCGTTTCTTTTCTTTTCC 57.669 33.333 0.00 0.00 0.00 3.13
2867 3604 6.128282 TGCTGGTATTCTGATCGTTTCTTTTC 60.128 38.462 0.00 0.00 0.00 2.29
2872 3609 4.034510 CCTTGCTGGTATTCTGATCGTTTC 59.965 45.833 0.00 0.00 0.00 2.78
2873 3610 3.941483 CCTTGCTGGTATTCTGATCGTTT 59.059 43.478 0.00 0.00 0.00 3.60
2965 3750 2.496871 CTGTTCCTTGGCATTGGCATTA 59.503 45.455 14.21 0.00 43.71 1.90
2974 3759 2.979676 CGCTGCTGTTCCTTGGCA 60.980 61.111 0.00 0.00 34.66 4.92
2975 3760 4.410743 GCGCTGCTGTTCCTTGGC 62.411 66.667 0.00 0.00 0.00 4.52
2976 3761 2.974489 CTGCGCTGCTGTTCCTTGG 61.974 63.158 9.73 0.00 0.00 3.61
2977 3762 2.559840 CTGCGCTGCTGTTCCTTG 59.440 61.111 9.73 0.00 0.00 3.61
2978 3763 3.360340 GCTGCGCTGCTGTTCCTT 61.360 61.111 29.28 0.00 0.00 3.36
3020 3805 1.309347 CTGAGGGAGCAGAGGAGGA 59.691 63.158 0.00 0.00 38.14 3.71
3031 3821 3.041946 GGAGAATAAAGAGGCTGAGGGA 58.958 50.000 0.00 0.00 0.00 4.20
3048 3838 1.420138 ACAAAAAGAGAAGGGCGGAGA 59.580 47.619 0.00 0.00 0.00 3.71
3049 3839 1.897560 ACAAAAAGAGAAGGGCGGAG 58.102 50.000 0.00 0.00 0.00 4.63
3050 3840 2.358322 AACAAAAAGAGAAGGGCGGA 57.642 45.000 0.00 0.00 0.00 5.54
3051 3841 4.783764 ATTAACAAAAAGAGAAGGGCGG 57.216 40.909 0.00 0.00 0.00 6.13
3052 3842 8.836413 TCATATATTAACAAAAAGAGAAGGGCG 58.164 33.333 0.00 0.00 0.00 6.13
3053 3843 9.952188 GTCATATATTAACAAAAAGAGAAGGGC 57.048 33.333 0.00 0.00 0.00 5.19
3206 4188 3.409605 AAGTGGACGTTGGCCGGTT 62.410 57.895 1.90 0.00 42.24 4.44
3227 4209 2.892852 TGGAAATGCCTCCAAGTTGAAG 59.107 45.455 3.87 0.00 42.69 3.02
3239 4221 0.465460 TATGGACGGCTGGAAATGCC 60.465 55.000 0.00 0.00 46.42 4.40
3246 4228 0.179048 TGAAGCATATGGACGGCTGG 60.179 55.000 4.56 0.00 38.04 4.85
3258 4240 4.023963 CAGCGATGATGAAGAATGAAGCAT 60.024 41.667 0.00 0.00 0.00 3.79
3303 4289 7.800380 CGAAAATGGATGTATCTAGAAACATGC 59.200 37.037 0.00 0.65 42.71 4.06
3310 4296 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
3311 4297 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
3312 4298 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
3313 4299 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
3314 4300 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
3316 4302 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
3317 4303 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
3319 4305 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
3320 4306 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
3322 4308 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
3324 4310 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
3325 4311 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
3328 4314 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3329 4315 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3330 4316 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3331 4317 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3332 4318 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3333 4319 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3334 4320 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3335 4321 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3336 4322 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3337 4323 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3339 4325 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
3340 4326 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
3341 4327 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
3342 4328 1.978454 ATACTACTCCCTCCGTTCGG 58.022 55.000 4.74 4.74 0.00 4.30
3344 4330 5.375773 AGAAGTATACTACTCCCTCCGTTC 58.624 45.833 5.65 0.00 38.26 3.95
3345 4331 5.385628 AGAAGTATACTACTCCCTCCGTT 57.614 43.478 5.65 0.00 38.26 4.44
3346 4332 5.385628 AAGAAGTATACTACTCCCTCCGT 57.614 43.478 5.65 0.00 38.26 4.69
3347 4333 6.997476 AGTTAAGAAGTATACTACTCCCTCCG 59.003 42.308 5.65 0.00 38.26 4.63
3348 4334 8.219868 AGAGTTAAGAAGTATACTACTCCCTCC 58.780 40.741 21.32 5.27 38.26 4.30
3349 4335 9.631257 AAGAGTTAAGAAGTATACTACTCCCTC 57.369 37.037 21.32 15.07 38.26 4.30
3350 4336 9.411189 CAAGAGTTAAGAAGTATACTACTCCCT 57.589 37.037 21.32 11.55 38.26 4.20
3351 4337 9.187996 ACAAGAGTTAAGAAGTATACTACTCCC 57.812 37.037 21.32 6.34 38.26 4.30
3357 4343 9.915629 CTGTTGACAAGAGTTAAGAAGTATACT 57.084 33.333 0.00 0.00 0.00 2.12
3358 4344 9.694137 ACTGTTGACAAGAGTTAAGAAGTATAC 57.306 33.333 12.00 0.00 29.58 1.47
3359 4345 9.909644 GACTGTTGACAAGAGTTAAGAAGTATA 57.090 33.333 18.12 0.00 34.82 1.47
3360 4346 7.873505 GGACTGTTGACAAGAGTTAAGAAGTAT 59.126 37.037 18.12 0.00 34.82 2.12
3361 4347 7.147794 TGGACTGTTGACAAGAGTTAAGAAGTA 60.148 37.037 18.12 0.00 34.82 2.24
3362 4348 6.049790 GGACTGTTGACAAGAGTTAAGAAGT 58.950 40.000 18.12 0.00 34.82 3.01
3363 4349 6.018669 GTGGACTGTTGACAAGAGTTAAGAAG 60.019 42.308 18.12 0.00 34.82 2.85
3364 4350 5.815740 GTGGACTGTTGACAAGAGTTAAGAA 59.184 40.000 18.12 1.94 34.82 2.52
3365 4351 5.105106 TGTGGACTGTTGACAAGAGTTAAGA 60.105 40.000 18.12 6.74 34.82 2.10
3370 4356 2.501723 AGTGTGGACTGTTGACAAGAGT 59.498 45.455 17.22 17.22 37.77 3.24
3391 4377 5.988287 AGAAGAAAAAGGCAACAATCCAAA 58.012 33.333 0.00 0.00 41.41 3.28
3453 4527 1.813513 TTAAGCAGTGAAGCCAGAGC 58.186 50.000 0.00 0.00 40.32 4.09
3454 4528 5.645497 AGTTAATTAAGCAGTGAAGCCAGAG 59.355 40.000 0.00 0.00 34.23 3.35
3455 4529 5.560724 AGTTAATTAAGCAGTGAAGCCAGA 58.439 37.500 0.00 0.00 34.23 3.86
3456 4530 5.886960 AGTTAATTAAGCAGTGAAGCCAG 57.113 39.130 0.00 0.00 34.23 4.85
3457 4531 6.472887 AGTAGTTAATTAAGCAGTGAAGCCA 58.527 36.000 0.00 0.00 34.23 4.75
3458 4532 6.986904 AGTAGTTAATTAAGCAGTGAAGCC 57.013 37.500 0.00 0.00 34.23 4.35
3459 4533 6.743172 GCAAGTAGTTAATTAAGCAGTGAAGC 59.257 38.462 0.00 0.00 0.00 3.86
3460 4534 8.034058 AGCAAGTAGTTAATTAAGCAGTGAAG 57.966 34.615 0.00 0.00 0.00 3.02
3461 4535 7.878127 AGAGCAAGTAGTTAATTAAGCAGTGAA 59.122 33.333 0.00 0.00 0.00 3.18
3462 4536 7.386851 AGAGCAAGTAGTTAATTAAGCAGTGA 58.613 34.615 0.00 0.00 0.00 3.41
3583 4707 5.590818 TCTATCTGTCTGTCCCCTAACTTT 58.409 41.667 0.00 0.00 0.00 2.66
3584 4708 5.044030 TCTCTATCTGTCTGTCCCCTAACTT 60.044 44.000 0.00 0.00 0.00 2.66
3585 4709 4.479056 TCTCTATCTGTCTGTCCCCTAACT 59.521 45.833 0.00 0.00 0.00 2.24
3586 4710 4.581409 GTCTCTATCTGTCTGTCCCCTAAC 59.419 50.000 0.00 0.00 0.00 2.34
3587 4711 4.229812 TGTCTCTATCTGTCTGTCCCCTAA 59.770 45.833 0.00 0.00 0.00 2.69
3588 4712 3.786450 TGTCTCTATCTGTCTGTCCCCTA 59.214 47.826 0.00 0.00 0.00 3.53
3594 4718 5.189928 CCTACACTGTCTCTATCTGTCTGT 58.810 45.833 0.00 0.00 0.00 3.41
3656 4780 7.940178 TCTAAACCATATAACTGTGTATGCG 57.060 36.000 7.55 5.05 29.73 4.73
3742 4866 4.071423 TGGATGATATTTGTATGTGCCGG 58.929 43.478 0.00 0.00 0.00 6.13
3743 4867 5.885230 ATGGATGATATTTGTATGTGCCG 57.115 39.130 0.00 0.00 0.00 5.69
3744 4868 7.092716 GGAAATGGATGATATTTGTATGTGCC 58.907 38.462 0.00 0.00 0.00 5.01
3784 4908 8.292448 ACACACACATTTTAGAAAGAAGCATAG 58.708 33.333 0.00 0.00 0.00 2.23
3803 4927 2.874701 AGAAGCATCTCAACACACACAC 59.125 45.455 0.00 0.00 0.00 3.82
3827 4951 9.655769 GCATCTGAACACACACATATATTTTAG 57.344 33.333 0.00 0.00 0.00 1.85
3828 4952 9.171877 TGCATCTGAACACACACATATATTTTA 57.828 29.630 0.00 0.00 0.00 1.52
3829 4953 8.054152 TGCATCTGAACACACACATATATTTT 57.946 30.769 0.00 0.00 0.00 1.82
3830 4954 7.628769 TGCATCTGAACACACACATATATTT 57.371 32.000 0.00 0.00 0.00 1.40
3831 4955 7.645402 CATGCATCTGAACACACACATATATT 58.355 34.615 0.00 0.00 0.00 1.28
3832 4956 6.293790 GCATGCATCTGAACACACACATATAT 60.294 38.462 14.21 0.00 0.00 0.86
3833 4957 5.007921 GCATGCATCTGAACACACACATATA 59.992 40.000 14.21 0.00 0.00 0.86
3834 4958 4.201980 GCATGCATCTGAACACACACATAT 60.202 41.667 14.21 0.00 0.00 1.78
3835 4959 3.127376 GCATGCATCTGAACACACACATA 59.873 43.478 14.21 0.00 0.00 2.29
3836 4960 2.094906 GCATGCATCTGAACACACACAT 60.095 45.455 14.21 0.00 0.00 3.21
3837 4961 1.267533 GCATGCATCTGAACACACACA 59.732 47.619 14.21 0.00 0.00 3.72
3838 4962 1.267533 TGCATGCATCTGAACACACAC 59.732 47.619 18.46 0.00 0.00 3.82
3839 4963 1.538075 CTGCATGCATCTGAACACACA 59.462 47.619 22.97 0.00 0.00 3.72
3840 4964 1.731424 GCTGCATGCATCTGAACACAC 60.731 52.381 22.97 0.00 42.31 3.82
3841 4965 0.524414 GCTGCATGCATCTGAACACA 59.476 50.000 22.97 0.00 42.31 3.72
3842 4966 3.324170 GCTGCATGCATCTGAACAC 57.676 52.632 22.97 0.00 42.31 3.32
3852 4976 2.074547 ATGAACACTTTGCTGCATGC 57.925 45.000 11.82 11.82 43.25 4.06
3853 4977 2.991190 GGAATGAACACTTTGCTGCATG 59.009 45.455 1.84 1.00 0.00 4.06
3859 4987 2.519013 AGAGGGGAATGAACACTTTGC 58.481 47.619 0.00 0.00 0.00 3.68
3909 5038 0.179094 TGTGCGAGACGGTTTGAAGT 60.179 50.000 0.00 0.00 0.00 3.01
3919 5049 1.522806 TGGGTGTTGTGTGCGAGAC 60.523 57.895 0.00 0.00 0.00 3.36
3926 5056 2.826738 GGCGTGTGGGTGTTGTGT 60.827 61.111 0.00 0.00 0.00 3.72
3974 5112 6.542821 TGGGACATCTACATGAACTCTTTTT 58.457 36.000 0.00 0.00 33.72 1.94
4014 5152 3.366476 CCTTCCACATCGATCTATCCGTC 60.366 52.174 0.00 0.00 0.00 4.79
4041 5182 8.461222 CGCACATTTATATATGAAACCATGGAT 58.539 33.333 21.47 2.68 0.00 3.41
4042 5183 7.574779 GCGCACATTTATATATGAAACCATGGA 60.575 37.037 21.47 0.00 0.00 3.41
4043 5184 6.527722 GCGCACATTTATATATGAAACCATGG 59.472 38.462 11.19 11.19 0.00 3.66
4044 5185 7.083230 TGCGCACATTTATATATGAAACCATG 58.917 34.615 5.66 0.00 0.00 3.66
4069 5212 2.800250 CTTTGTTGCAGGAATCCCTCT 58.200 47.619 0.00 0.00 42.02 3.69
4143 5289 6.529696 GTTTAGAAAGAAGCATCTGAAGACG 58.470 40.000 0.00 0.00 35.59 4.18
4207 5366 5.581605 TGATCAAAGCTTCTTTGTGACAAC 58.418 37.500 16.09 0.00 0.00 3.32
4248 5407 4.476479 AGAACAAAGGAGGAGCCAGATATT 59.524 41.667 0.00 0.00 40.02 1.28
4539 5716 0.038166 TTGAAGATCCCCACACAGCC 59.962 55.000 0.00 0.00 0.00 4.85
4665 5847 2.297701 TGGTGTTTTTCAGTCTCCTGC 58.702 47.619 0.00 0.00 38.66 4.85
4709 5896 6.554334 TCTCTTTAACCACAAACATACTGC 57.446 37.500 0.00 0.00 0.00 4.40
4710 5897 7.925993 TGTTCTCTTTAACCACAAACATACTG 58.074 34.615 0.00 0.00 0.00 2.74
4718 5912 9.765795 TTTTCTTTTTGTTCTCTTTAACCACAA 57.234 25.926 0.00 0.00 0.00 3.33
4750 5944 1.418334 AGGATGGATTCTCTGACCCG 58.582 55.000 0.00 0.00 0.00 5.28
4799 6009 5.768317 TGTTTTTGGTATCTGCAAACTAGC 58.232 37.500 0.00 0.00 0.00 3.42
4800 6010 7.867403 ACAATGTTTTTGGTATCTGCAAACTAG 59.133 33.333 0.00 0.00 0.00 2.57
4801 6011 7.721402 ACAATGTTTTTGGTATCTGCAAACTA 58.279 30.769 0.00 0.00 0.00 2.24
4802 6012 6.581712 ACAATGTTTTTGGTATCTGCAAACT 58.418 32.000 0.00 0.00 0.00 2.66
4803 6013 6.843069 ACAATGTTTTTGGTATCTGCAAAC 57.157 33.333 0.00 0.00 0.00 2.93
4804 6014 7.721402 AGTACAATGTTTTTGGTATCTGCAAA 58.279 30.769 0.00 0.00 0.00 3.68
4805 6015 7.283625 AGTACAATGTTTTTGGTATCTGCAA 57.716 32.000 0.00 0.00 0.00 4.08
4812 6030 9.263538 CACTACACTAGTACAATGTTTTTGGTA 57.736 33.333 0.00 0.00 37.23 3.25
4814 6032 8.280497 GTCACTACACTAGTACAATGTTTTTGG 58.720 37.037 0.00 0.00 37.23 3.28
4954 6205 3.536956 TGCTATACTTGCCACTGGTAC 57.463 47.619 0.00 0.00 0.00 3.34
4958 6209 4.637534 ACAAGAATGCTATACTTGCCACTG 59.362 41.667 0.00 0.00 42.93 3.66
4964 6215 6.591448 TCACTCACACAAGAATGCTATACTTG 59.409 38.462 0.00 0.00 44.16 3.16
4967 6218 6.968131 TTCACTCACACAAGAATGCTATAC 57.032 37.500 0.00 0.00 0.00 1.47
4968 6219 6.092670 GCTTTCACTCACACAAGAATGCTATA 59.907 38.462 0.00 0.00 37.83 1.31
4969 6220 5.106396 GCTTTCACTCACACAAGAATGCTAT 60.106 40.000 0.00 0.00 37.83 2.97
4970 6221 4.214119 GCTTTCACTCACACAAGAATGCTA 59.786 41.667 0.00 0.00 37.83 3.49
4977 6228 3.763097 TGTTGCTTTCACTCACACAAG 57.237 42.857 0.00 0.00 0.00 3.16
5055 6314 1.093159 CCTCTGCTTTGACCTCATGC 58.907 55.000 0.00 0.00 0.00 4.06
5128 6387 2.104572 TAGATGATGCCGGCTCCTGC 62.105 60.000 29.70 14.27 38.76 4.85
5179 6439 9.947433 CATTCCACATGGCCATTTTATTTATAT 57.053 29.630 17.92 0.00 34.44 0.86
5276 6603 6.952773 AACTACAATTAGCAACCAAACAGA 57.047 33.333 0.00 0.00 0.00 3.41
5312 6651 6.887013 ACTGCATCTCTCTTTCAGTGATTAT 58.113 36.000 0.00 0.00 36.72 1.28
5356 6695 5.770663 TCAGAGATGCATACTACTTACTCCC 59.229 44.000 0.00 0.00 0.00 4.30
5387 6726 2.091610 AGTCCACAGCTAGCTCCAGATA 60.092 50.000 16.15 0.00 0.00 1.98
5443 6794 7.342581 TGAATCCATTGCTACCAACTATACAA 58.657 34.615 0.00 0.00 32.95 2.41
5453 6804 7.275888 TCAAACATATGAATCCATTGCTACC 57.724 36.000 10.38 0.00 34.31 3.18
6013 7367 2.041686 AGACGGAGACTGACCTCGC 61.042 63.158 0.00 0.00 34.08 5.03
6078 7470 1.335810 TCTGCTGCAAACAAAGAGCTG 59.664 47.619 3.02 0.00 32.41 4.24
6546 7969 2.573009 TGCTGGATTCAGAGAATGGTGA 59.427 45.455 4.75 0.00 43.49 4.02
6547 7970 2.681848 GTGCTGGATTCAGAGAATGGTG 59.318 50.000 4.75 0.00 43.49 4.17
6548 7971 2.306805 TGTGCTGGATTCAGAGAATGGT 59.693 45.455 4.75 0.00 43.49 3.55
6550 7973 4.035324 GTCATGTGCTGGATTCAGAGAATG 59.965 45.833 4.75 4.65 43.49 2.67
6573 8010 5.184479 ACAACACCAAAGAATCATCATCTGG 59.816 40.000 0.00 0.00 0.00 3.86
6707 8182 3.643237 ACCAATGGAGATTCGGACTAGA 58.357 45.455 6.16 0.00 0.00 2.43
6708 8183 5.531122 TTACCAATGGAGATTCGGACTAG 57.469 43.478 6.16 0.00 0.00 2.57
6709 8184 5.943349 TTTACCAATGGAGATTCGGACTA 57.057 39.130 6.16 0.00 0.00 2.59
6710 8185 4.837093 TTTACCAATGGAGATTCGGACT 57.163 40.909 6.16 0.00 0.00 3.85
6711 8186 4.941873 AGTTTTACCAATGGAGATTCGGAC 59.058 41.667 6.16 0.00 0.00 4.79
6712 8187 5.174037 AGTTTTACCAATGGAGATTCGGA 57.826 39.130 6.16 0.00 0.00 4.55
6713 8188 5.897377 AAGTTTTACCAATGGAGATTCGG 57.103 39.130 6.16 0.00 0.00 4.30
6714 8189 9.124807 GTTTTAAGTTTTACCAATGGAGATTCG 57.875 33.333 6.16 0.00 0.00 3.34
6733 8208 7.878127 TCAGAGTGAAAGTATCCCAGTTTTAAG 59.122 37.037 0.00 0.00 29.58 1.85
6777 8255 0.397941 CAGCACCACAAGGAGAGGAA 59.602 55.000 0.00 0.00 38.69 3.36
6778 8256 2.061220 CAGCACCACAAGGAGAGGA 58.939 57.895 0.00 0.00 38.69 3.71
6779 8257 1.673665 GCAGCACCACAAGGAGAGG 60.674 63.158 0.00 0.00 38.69 3.69
6780 8258 0.954449 CAGCAGCACCACAAGGAGAG 60.954 60.000 0.00 0.00 38.69 3.20
6781 8259 1.071987 CAGCAGCACCACAAGGAGA 59.928 57.895 0.00 0.00 38.69 3.71
6782 8260 2.623915 GCAGCAGCACCACAAGGAG 61.624 63.158 0.00 0.00 41.58 3.69
6783 8261 2.595463 GCAGCAGCACCACAAGGA 60.595 61.111 0.00 0.00 41.58 3.36
6784 8262 2.596631 AGCAGCAGCACCACAAGG 60.597 61.111 3.17 0.00 45.49 3.61
6785 8263 2.643272 CAGCAGCAGCACCACAAG 59.357 61.111 3.17 0.00 45.49 3.16
6786 8264 3.598715 GCAGCAGCAGCACCACAA 61.599 61.111 4.63 0.00 45.49 3.33
6787 8265 2.679369 TAAGCAGCAGCAGCACCACA 62.679 55.000 12.92 0.00 45.49 4.17
6789 8267 0.609957 ATTAAGCAGCAGCAGCACCA 60.610 50.000 12.92 0.00 45.49 4.17
6790 8268 0.529378 AATTAAGCAGCAGCAGCACC 59.471 50.000 12.92 0.00 45.49 5.01
6791 8269 2.162208 TGTAATTAAGCAGCAGCAGCAC 59.838 45.455 12.92 0.69 45.49 4.40
6792 8270 2.435422 TGTAATTAAGCAGCAGCAGCA 58.565 42.857 12.92 0.00 45.49 4.41
6871 8375 1.471999 CCCTCTCCCCCTCCTATCC 59.528 68.421 0.00 0.00 0.00 2.59
6935 8487 2.175202 GTGAGAGTCACAGGATCACCT 58.825 52.381 2.12 0.00 46.22 4.00
6946 8498 2.685850 CATGGATGCAGTGAGAGTCA 57.314 50.000 0.00 0.00 0.00 3.41
7079 8657 9.139174 GTTAGCACTGCATAAATAAACAAATGT 57.861 29.630 3.30 0.00 0.00 2.71
7080 8658 9.138062 TGTTAGCACTGCATAAATAAACAAATG 57.862 29.630 3.30 0.00 0.00 2.32
7081 8659 9.357652 CTGTTAGCACTGCATAAATAAACAAAT 57.642 29.630 3.30 0.00 0.00 2.32
7105 8706 3.016031 TGCCATGTTAGTTGTATGCCTG 58.984 45.455 0.00 0.00 0.00 4.85
7163 8822 1.073763 TGCACAGAATTGTACCAGCCT 59.926 47.619 0.00 0.00 35.25 4.58
7164 8823 1.533625 TGCACAGAATTGTACCAGCC 58.466 50.000 0.00 0.00 35.25 4.85
7165 8824 2.749076 TGATGCACAGAATTGTACCAGC 59.251 45.455 0.00 0.00 35.25 4.85
7258 8918 6.717289 AGTTGATTTGGGTAGCAGTTGTATA 58.283 36.000 0.00 0.00 0.00 1.47
7259 8919 5.570320 AGTTGATTTGGGTAGCAGTTGTAT 58.430 37.500 0.00 0.00 0.00 2.29
7278 8938 2.684001 TATGTCCCTTGCCGTAGTTG 57.316 50.000 0.00 0.00 0.00 3.16
7401 9062 4.020573 TCAGTATCAAGGTTTGACACGGAT 60.021 41.667 0.14 0.00 41.78 4.18
7462 9125 4.572909 TGTCAAACCTCAGATCTCACATG 58.427 43.478 0.00 0.00 0.00 3.21
7469 9132 4.213564 AGACCATGTCAAACCTCAGATC 57.786 45.455 0.00 0.00 34.60 2.75
7470 9133 4.647564 AAGACCATGTCAAACCTCAGAT 57.352 40.909 0.00 0.00 34.60 2.90
7513 9176 1.901833 GGATGCAAATCAACCCTTGGT 59.098 47.619 0.00 0.00 37.65 3.67
7524 9187 4.080975 CCCTGTGTTTTATGGGATGCAAAT 60.081 41.667 0.00 0.00 42.11 2.32
7525 9188 3.260380 CCCTGTGTTTTATGGGATGCAAA 59.740 43.478 0.00 0.00 42.11 3.68
7526 9189 2.830923 CCCTGTGTTTTATGGGATGCAA 59.169 45.455 0.00 0.00 42.11 4.08
7528 9191 2.689983 CTCCCTGTGTTTTATGGGATGC 59.310 50.000 0.00 0.00 46.42 3.91
7529 9192 2.689983 GCTCCCTGTGTTTTATGGGATG 59.310 50.000 0.00 0.00 46.42 3.51
7530 9193 2.358195 GGCTCCCTGTGTTTTATGGGAT 60.358 50.000 0.00 0.00 46.42 3.85
7531 9194 1.005450 GGCTCCCTGTGTTTTATGGGA 59.995 52.381 0.00 0.00 45.58 4.37
7573 9249 3.617263 GTCAGGTAAGTTACGGAATGCAG 59.383 47.826 6.94 0.00 0.00 4.41
7581 9257 1.197721 ACCGTCGTCAGGTAAGTTACG 59.802 52.381 6.94 0.00 40.80 3.18
7601 9277 1.202746 TGTGTGCACTACATTGAGGCA 60.203 47.619 19.41 0.00 42.24 4.75
7626 9302 3.067106 GGAGCGTTTCTGACTTCATTCA 58.933 45.455 0.00 0.00 0.00 2.57
7676 9352 0.461961 GCATTCTGTCTCCCTACGCT 59.538 55.000 0.00 0.00 0.00 5.07
7685 9361 4.202101 CGGATAAGAGAGTGCATTCTGTCT 60.202 45.833 17.40 7.32 39.26 3.41
7695 9371 1.001406 GGCATCCCGGATAAGAGAGTG 59.999 57.143 0.73 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.