Multiple sequence alignment - TraesCS5D01G555000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G555000 chr5D 100.000 4471 0 0 1 4471 558952834 558948364 0.000000e+00 8257.0
1 TraesCS5D01G555000 chr5D 80.702 342 41 16 4129 4466 558932020 558931700 4.470000e-60 243.0
2 TraesCS5D01G555000 chr5D 80.420 143 7 12 1081 1214 254394053 254394183 6.160000e-14 89.8
3 TraesCS5D01G555000 chr4A 86.903 2260 200 44 2249 4471 612060841 612058641 0.000000e+00 2446.0
4 TraesCS5D01G555000 chr4A 87.698 1008 56 25 1 977 612062860 612061890 0.000000e+00 1112.0
5 TraesCS5D01G555000 chr4A 81.153 451 39 32 987 1413 612061785 612061357 2.010000e-83 320.0
6 TraesCS5D01G555000 chr5B 87.529 1700 143 23 2150 3828 693007620 693009271 0.000000e+00 1901.0
7 TraesCS5D01G555000 chr5B 86.919 1055 78 27 1 1011 693005332 693006370 0.000000e+00 1129.0
8 TraesCS5D01G555000 chr5B 85.841 339 44 3 4129 4466 693023109 693023444 1.530000e-94 357.0
9 TraesCS5D01G555000 chr5B 80.531 339 31 13 1100 1424 693006648 693006965 1.250000e-55 228.0
10 TraesCS5D01G555000 chr7B 83.273 275 32 10 1152 1424 742425150 742425412 1.610000e-59 241.0
11 TraesCS5D01G555000 chr7B 100.000 28 0 0 2030 2057 453931067 453931040 8.000000e-03 52.8
12 TraesCS5D01G555000 chr3B 95.775 71 3 0 360 430 53615614 53615544 1.020000e-21 115.0
13 TraesCS5D01G555000 chr7A 100.000 36 0 0 2029 2064 635689518 635689553 2.890000e-07 67.6
14 TraesCS5D01G555000 chr2D 97.059 34 1 0 2030 2063 20681470 20681437 1.740000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G555000 chr5D 558948364 558952834 4470 True 8257.000000 8257 100.000000 1 4471 1 chr5D.!!$R2 4470
1 TraesCS5D01G555000 chr4A 612058641 612062860 4219 True 1292.666667 2446 85.251333 1 4471 3 chr4A.!!$R1 4470
2 TraesCS5D01G555000 chr5B 693005332 693009271 3939 False 1086.000000 1901 84.993000 1 3828 3 chr5B.!!$F2 3827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
740 773 0.036388 CAAGCGAGCAGGGTTAGGAA 60.036 55.0 0.0 0.0 0.00 3.36 F
1600 2074 0.190069 TAGTACTCCCATCGCCCCAT 59.810 55.0 0.0 0.0 0.00 4.00 F
3161 3676 0.035458 CTTTCGTCACCTTCAGGGCT 59.965 55.0 0.0 0.0 40.27 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 2615 0.038166 AACGGATGGCAATGGACAGT 59.962 50.0 0.00 0.00 33.72 3.55 R
3469 3988 0.036732 TGTCAATCACACAGAGGGGC 59.963 55.0 0.00 0.00 0.00 5.80 R
4304 4841 0.108898 CCTCAACAGACTGAGCGAGG 60.109 60.0 18.52 18.52 41.36 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.427547 GCCTCCTCTTCAGAATCATTATCTTG 59.572 42.308 0.00 0.00 0.00 3.02
123 124 2.287915 CAGACCTTTGAGAACAACCACG 59.712 50.000 0.00 0.00 35.63 4.94
728 761 3.121030 CGGAACCTGGCAAGCGAG 61.121 66.667 0.00 0.00 0.00 5.03
730 763 2.669569 GAACCTGGCAAGCGAGCA 60.670 61.111 5.80 0.00 35.83 4.26
735 768 4.269523 TGGCAAGCGAGCAGGGTT 62.270 61.111 5.80 0.00 35.83 4.11
739 772 1.596934 CAAGCGAGCAGGGTTAGGA 59.403 57.895 0.00 0.00 0.00 2.94
740 773 0.036388 CAAGCGAGCAGGGTTAGGAA 60.036 55.000 0.00 0.00 0.00 3.36
792 832 1.007238 AGTTGGTAGCTAGGCTGAGGA 59.993 52.381 0.00 0.00 40.10 3.71
853 901 3.917760 GCGAGGAGATCCGGGTGG 61.918 72.222 0.00 0.00 42.08 4.61
854 902 3.227276 CGAGGAGATCCGGGTGGG 61.227 72.222 0.00 0.00 42.08 4.61
855 903 2.041819 GAGGAGATCCGGGTGGGT 60.042 66.667 0.00 0.00 42.08 4.51
856 904 2.365635 AGGAGATCCGGGTGGGTG 60.366 66.667 0.00 0.00 42.08 4.61
857 905 4.176752 GGAGATCCGGGTGGGTGC 62.177 72.222 0.00 0.00 37.00 5.01
864 912 3.461773 CGGGTGGGTGCGAGAGAT 61.462 66.667 0.00 0.00 0.00 2.75
869 917 0.671251 GTGGGTGCGAGAGATAGAGG 59.329 60.000 0.00 0.00 0.00 3.69
870 918 1.109920 TGGGTGCGAGAGATAGAGGC 61.110 60.000 0.00 0.00 0.00 4.70
874 922 2.558821 CGAGAGATAGAGGCGGCG 59.441 66.667 0.51 0.51 0.00 6.46
888 936 2.474712 GGCGAGCGGAAGAAAACG 59.525 61.111 0.00 0.00 0.00 3.60
928 989 1.080093 CCGGCTTCTTGTCGTGCTA 60.080 57.895 0.00 0.00 43.10 3.49
955 1016 1.761784 CTCTCAGACTTGGCCTGCTAT 59.238 52.381 3.32 0.00 0.00 2.97
979 1040 1.004745 CCCAGTTCACAGCCCATAGTT 59.995 52.381 0.00 0.00 0.00 2.24
980 1041 2.238646 CCCAGTTCACAGCCCATAGTTA 59.761 50.000 0.00 0.00 0.00 2.24
981 1042 3.117888 CCCAGTTCACAGCCCATAGTTAT 60.118 47.826 0.00 0.00 0.00 1.89
982 1043 3.879295 CCAGTTCACAGCCCATAGTTATG 59.121 47.826 0.00 0.00 0.00 1.90
984 1045 3.200825 AGTTCACAGCCCATAGTTATGCT 59.799 43.478 0.00 0.00 32.40 3.79
990 1146 4.408921 ACAGCCCATAGTTATGCTCAGTTA 59.591 41.667 0.00 0.00 32.40 2.24
1026 1182 2.474359 CGGAGCATCGTCATTCTCATTC 59.526 50.000 0.00 0.00 34.37 2.67
1027 1183 3.726607 GGAGCATCGTCATTCTCATTCT 58.273 45.455 0.00 0.00 34.37 2.40
1028 1184 3.740321 GGAGCATCGTCATTCTCATTCTC 59.260 47.826 0.00 0.00 34.37 2.87
1029 1185 3.726607 AGCATCGTCATTCTCATTCTCC 58.273 45.455 0.00 0.00 0.00 3.71
1030 1186 3.387374 AGCATCGTCATTCTCATTCTCCT 59.613 43.478 0.00 0.00 0.00 3.69
1040 1196 0.914644 TCATTCTCCTTCCCCTGCTG 59.085 55.000 0.00 0.00 0.00 4.41
1042 1198 0.918310 ATTCTCCTTCCCCTGCTGCT 60.918 55.000 0.00 0.00 0.00 4.24
1043 1199 1.557269 TTCTCCTTCCCCTGCTGCTC 61.557 60.000 0.00 0.00 0.00 4.26
1044 1200 3.011517 TCCTTCCCCTGCTGCTCC 61.012 66.667 0.00 0.00 0.00 4.70
1045 1201 3.013932 CCTTCCCCTGCTGCTCCT 61.014 66.667 0.00 0.00 0.00 3.69
1046 1202 2.588989 CTTCCCCTGCTGCTCCTC 59.411 66.667 0.00 0.00 0.00 3.71
1057 1214 2.284995 GCTCCTCCCCACCACTCT 60.285 66.667 0.00 0.00 0.00 3.24
1058 1215 1.920835 GCTCCTCCCCACCACTCTT 60.921 63.158 0.00 0.00 0.00 2.85
1060 1217 0.252467 CTCCTCCCCACCACTCTTCT 60.252 60.000 0.00 0.00 0.00 2.85
1063 1220 2.232298 CTCCCCACCACTCTTCTCGC 62.232 65.000 0.00 0.00 0.00 5.03
1064 1221 2.266055 CCCACCACTCTTCTCGCC 59.734 66.667 0.00 0.00 0.00 5.54
1069 1236 4.821589 CACTCTTCTCGCCCGCCC 62.822 72.222 0.00 0.00 0.00 6.13
1085 1252 0.253894 GCCCCGAAAACCCTAGCTAA 59.746 55.000 0.00 0.00 0.00 3.09
1086 1253 1.133884 GCCCCGAAAACCCTAGCTAAT 60.134 52.381 0.00 0.00 0.00 1.73
1088 1255 3.211865 CCCCGAAAACCCTAGCTAATTC 58.788 50.000 0.00 0.00 0.00 2.17
1089 1256 3.118000 CCCCGAAAACCCTAGCTAATTCT 60.118 47.826 0.00 0.00 0.00 2.40
1090 1257 4.127907 CCCGAAAACCCTAGCTAATTCTC 58.872 47.826 0.00 0.00 0.00 2.87
1215 1569 0.988063 GCCTTCTCAGGTTCCTCCTT 59.012 55.000 0.00 0.00 45.67 3.36
1216 1570 1.352687 GCCTTCTCAGGTTCCTCCTTT 59.647 52.381 0.00 0.00 45.67 3.11
1222 1584 2.235898 CTCAGGTTCCTCCTTTCTCCTG 59.764 54.545 0.00 0.00 45.67 3.86
1223 1585 1.981495 CAGGTTCCTCCTTTCTCCTGT 59.019 52.381 0.00 0.00 45.67 4.00
1307 1675 1.066573 AGCTGAGACGATTTGGTGAGG 60.067 52.381 0.00 0.00 0.00 3.86
1309 1677 0.684535 TGAGACGATTTGGTGAGGCA 59.315 50.000 0.00 0.00 0.00 4.75
1315 1683 2.019249 CGATTTGGTGAGGCATGTGAT 58.981 47.619 0.00 0.00 0.00 3.06
1337 1705 1.406069 CGATTCTGCTGCCTAGTGGTT 60.406 52.381 0.00 0.00 35.27 3.67
1424 1807 5.981315 GTGTTATCTGGCCAATTGATTGATG 59.019 40.000 7.01 0.00 40.14 3.07
1425 1808 5.892686 TGTTATCTGGCCAATTGATTGATGA 59.107 36.000 7.01 0.00 40.14 2.92
1426 1809 4.931661 ATCTGGCCAATTGATTGATGAC 57.068 40.909 7.01 0.00 40.14 3.06
1430 1842 5.188163 TCTGGCCAATTGATTGATGACAAAT 59.812 36.000 7.01 0.00 40.14 2.32
1433 1845 5.644636 GGCCAATTGATTGATGACAAATTGT 59.355 36.000 7.12 0.00 40.14 2.71
1434 1846 6.149807 GGCCAATTGATTGATGACAAATTGTT 59.850 34.615 7.12 0.00 40.14 2.83
1436 1848 8.885722 GCCAATTGATTGATGACAAATTGTTAT 58.114 29.630 7.12 2.92 40.14 1.89
1455 1895 5.419155 TGTTATTTGTTGGTGTTGGTCTGAA 59.581 36.000 0.00 0.00 0.00 3.02
1456 1896 6.071334 TGTTATTTGTTGGTGTTGGTCTGAAA 60.071 34.615 0.00 0.00 0.00 2.69
1466 1906 4.455877 GTGTTGGTCTGAAATGGTTAGGAG 59.544 45.833 0.00 0.00 0.00 3.69
1468 1908 2.026262 TGGTCTGAAATGGTTAGGAGCC 60.026 50.000 0.00 0.00 0.00 4.70
1469 1909 2.239907 GGTCTGAAATGGTTAGGAGCCT 59.760 50.000 0.00 0.00 0.00 4.58
1470 1910 3.308473 GGTCTGAAATGGTTAGGAGCCTT 60.308 47.826 0.00 0.00 0.00 4.35
1471 1911 3.942115 GTCTGAAATGGTTAGGAGCCTTC 59.058 47.826 0.00 0.00 0.00 3.46
1475 1915 0.994050 ATGGTTAGGAGCCTTCCCCC 60.994 60.000 0.00 0.00 45.24 5.40
1476 1916 1.307953 GGTTAGGAGCCTTCCCCCT 60.308 63.158 0.00 0.00 45.24 4.79
1477 1917 1.636769 GGTTAGGAGCCTTCCCCCTG 61.637 65.000 0.00 0.00 45.24 4.45
1480 1920 2.132946 TAGGAGCCTTCCCCCTGGTT 62.133 60.000 0.00 0.00 45.24 3.67
1491 1931 4.249638 TCCCCCTGGTTCATCATTTTAG 57.750 45.455 0.00 0.00 0.00 1.85
1495 1935 3.382546 CCCTGGTTCATCATTTTAGCCAG 59.617 47.826 0.00 0.00 41.02 4.85
1497 1937 4.337555 CCTGGTTCATCATTTTAGCCAGAG 59.662 45.833 9.02 0.00 43.22 3.35
1536 1980 5.278907 CCCACATTGATGTTGTTCTGCTTAA 60.279 40.000 0.00 0.00 39.39 1.85
1537 1981 6.392354 CCACATTGATGTTGTTCTGCTTAAT 58.608 36.000 0.00 0.00 39.39 1.40
1539 1983 7.310664 CACATTGATGTTGTTCTGCTTAATCT 58.689 34.615 0.00 0.00 39.39 2.40
1544 1988 6.265196 TGATGTTGTTCTGCTTAATCTGGTTT 59.735 34.615 0.00 0.00 0.00 3.27
1545 1989 6.072112 TGTTGTTCTGCTTAATCTGGTTTC 57.928 37.500 0.00 0.00 0.00 2.78
1546 1990 5.147162 GTTGTTCTGCTTAATCTGGTTTCG 58.853 41.667 0.00 0.00 0.00 3.46
1547 1991 4.385825 TGTTCTGCTTAATCTGGTTTCGT 58.614 39.130 0.00 0.00 0.00 3.85
1548 1992 4.213270 TGTTCTGCTTAATCTGGTTTCGTG 59.787 41.667 0.00 0.00 0.00 4.35
1549 1993 2.742053 TCTGCTTAATCTGGTTTCGTGC 59.258 45.455 0.00 0.00 0.00 5.34
1550 1994 2.744202 CTGCTTAATCTGGTTTCGTGCT 59.256 45.455 0.00 0.00 0.00 4.40
1551 1995 2.742053 TGCTTAATCTGGTTTCGTGCTC 59.258 45.455 0.00 0.00 0.00 4.26
1552 1996 3.003480 GCTTAATCTGGTTTCGTGCTCT 58.997 45.455 0.00 0.00 0.00 4.09
1553 1997 3.437049 GCTTAATCTGGTTTCGTGCTCTT 59.563 43.478 0.00 0.00 0.00 2.85
1554 1998 4.630069 GCTTAATCTGGTTTCGTGCTCTTA 59.370 41.667 0.00 0.00 0.00 2.10
1555 1999 5.121768 GCTTAATCTGGTTTCGTGCTCTTAA 59.878 40.000 0.00 0.00 0.00 1.85
1556 2000 6.476243 TTAATCTGGTTTCGTGCTCTTAAC 57.524 37.500 0.00 0.00 0.00 2.01
1557 2001 3.746045 TCTGGTTTCGTGCTCTTAACT 57.254 42.857 0.00 0.00 0.00 2.24
1558 2002 4.067972 TCTGGTTTCGTGCTCTTAACTT 57.932 40.909 0.00 0.00 0.00 2.66
1559 2003 4.056050 TCTGGTTTCGTGCTCTTAACTTC 58.944 43.478 0.00 0.00 0.00 3.01
1560 2004 2.798283 TGGTTTCGTGCTCTTAACTTCG 59.202 45.455 0.00 0.00 0.00 3.79
1561 2005 2.798847 GGTTTCGTGCTCTTAACTTCGT 59.201 45.455 0.00 0.00 0.00 3.85
1563 2007 4.445385 GGTTTCGTGCTCTTAACTTCGTAA 59.555 41.667 0.00 0.00 0.00 3.18
1565 2009 3.829948 TCGTGCTCTTAACTTCGTAAGG 58.170 45.455 0.00 0.00 32.81 2.69
1573 2017 7.227910 TGCTCTTAACTTCGTAAGGAAATTTGT 59.772 33.333 0.00 0.00 33.34 2.83
1574 2018 8.715088 GCTCTTAACTTCGTAAGGAAATTTGTA 58.285 33.333 0.00 0.00 33.34 2.41
1594 2068 7.741027 TTGTAATCTACTAGTACTCCCATCG 57.259 40.000 0.00 0.00 29.93 3.84
1595 2069 5.704515 TGTAATCTACTAGTACTCCCATCGC 59.295 44.000 0.00 0.00 29.93 4.58
1596 2070 3.137446 TCTACTAGTACTCCCATCGCC 57.863 52.381 0.00 0.00 0.00 5.54
1597 2071 2.161030 CTACTAGTACTCCCATCGCCC 58.839 57.143 0.00 0.00 0.00 6.13
1598 2072 0.469518 ACTAGTACTCCCATCGCCCC 60.470 60.000 0.00 0.00 0.00 5.80
1599 2073 0.469331 CTAGTACTCCCATCGCCCCA 60.469 60.000 0.00 0.00 0.00 4.96
1600 2074 0.190069 TAGTACTCCCATCGCCCCAT 59.810 55.000 0.00 0.00 0.00 4.00
1601 2075 0.190069 AGTACTCCCATCGCCCCATA 59.810 55.000 0.00 0.00 0.00 2.74
1602 2076 0.608640 GTACTCCCATCGCCCCATAG 59.391 60.000 0.00 0.00 0.00 2.23
1603 2077 0.190069 TACTCCCATCGCCCCATAGT 59.810 55.000 0.00 0.00 0.00 2.12
1604 2078 0.190069 ACTCCCATCGCCCCATAGTA 59.810 55.000 0.00 0.00 0.00 1.82
1605 2079 1.203313 ACTCCCATCGCCCCATAGTAT 60.203 52.381 0.00 0.00 0.00 2.12
1606 2080 2.043939 ACTCCCATCGCCCCATAGTATA 59.956 50.000 0.00 0.00 0.00 1.47
1607 2081 3.104512 CTCCCATCGCCCCATAGTATAA 58.895 50.000 0.00 0.00 0.00 0.98
1608 2082 3.104512 TCCCATCGCCCCATAGTATAAG 58.895 50.000 0.00 0.00 0.00 1.73
1609 2083 3.104512 CCCATCGCCCCATAGTATAAGA 58.895 50.000 0.00 0.00 0.00 2.10
1610 2084 3.711704 CCCATCGCCCCATAGTATAAGAT 59.288 47.826 0.00 0.00 0.00 2.40
1611 2085 4.202264 CCCATCGCCCCATAGTATAAGATC 60.202 50.000 0.00 0.00 0.00 2.75
1612 2086 4.405680 CCATCGCCCCATAGTATAAGATCA 59.594 45.833 0.00 0.00 0.00 2.92
1613 2087 5.070981 CCATCGCCCCATAGTATAAGATCAT 59.929 44.000 0.00 0.00 0.00 2.45
1614 2088 6.408548 CCATCGCCCCATAGTATAAGATCATT 60.409 42.308 0.00 0.00 0.00 2.57
1615 2089 6.620877 TCGCCCCATAGTATAAGATCATTT 57.379 37.500 0.00 0.00 0.00 2.32
1616 2090 6.406370 TCGCCCCATAGTATAAGATCATTTG 58.594 40.000 0.00 0.00 0.00 2.32
1617 2091 5.065218 CGCCCCATAGTATAAGATCATTTGC 59.935 44.000 0.00 0.00 0.00 3.68
1618 2092 5.945784 GCCCCATAGTATAAGATCATTTGCA 59.054 40.000 0.00 0.00 0.00 4.08
1619 2093 6.434028 GCCCCATAGTATAAGATCATTTGCAA 59.566 38.462 0.00 0.00 0.00 4.08
1620 2094 7.362401 GCCCCATAGTATAAGATCATTTGCAAG 60.362 40.741 0.00 0.00 0.00 4.01
1621 2095 7.362401 CCCCATAGTATAAGATCATTTGCAAGC 60.362 40.741 0.00 0.00 0.00 4.01
1622 2096 7.392673 CCCATAGTATAAGATCATTTGCAAGCT 59.607 37.037 0.00 0.00 0.00 3.74
1623 2097 9.440773 CCATAGTATAAGATCATTTGCAAGCTA 57.559 33.333 0.00 0.00 0.00 3.32
1662 2136 7.711846 ACTATTCTTTACAAATTGTGTGCACA 58.288 30.769 17.42 17.42 41.89 4.57
1681 2155 2.558359 ACAAGCAGAACCACCTATTTGC 59.442 45.455 0.00 0.00 0.00 3.68
1683 2157 2.716217 AGCAGAACCACCTATTTGCTC 58.284 47.619 0.00 0.00 37.31 4.26
1689 2163 0.583438 CCACCTATTTGCTCGCATCG 59.417 55.000 0.00 0.00 0.00 3.84
1690 2164 1.290203 CACCTATTTGCTCGCATCGT 58.710 50.000 0.00 0.00 0.00 3.73
1694 2168 1.926510 CTATTTGCTCGCATCGTGTGA 59.073 47.619 0.00 2.19 35.36 3.58
1696 2170 2.003196 TTTGCTCGCATCGTGTGATA 57.997 45.000 0.00 0.00 36.18 2.15
1698 2172 0.455815 TGCTCGCATCGTGTGATAGT 59.544 50.000 2.51 0.00 36.18 2.12
1699 2173 0.848942 GCTCGCATCGTGTGATAGTG 59.151 55.000 2.51 0.00 36.18 2.74
1707 2182 4.084066 GCATCGTGTGATAGTGTTTTGACA 60.084 41.667 0.00 0.00 32.18 3.58
1708 2183 5.559991 GCATCGTGTGATAGTGTTTTGACAA 60.560 40.000 0.00 0.00 32.18 3.18
1717 2192 9.121517 GTGATAGTGTTTTGACAAAATCAGATG 57.878 33.333 16.03 0.00 38.99 2.90
1719 2194 6.469782 AGTGTTTTGACAAAATCAGATGGT 57.530 33.333 16.03 0.00 38.99 3.55
1720 2195 6.275335 AGTGTTTTGACAAAATCAGATGGTG 58.725 36.000 16.03 0.00 38.99 4.17
1723 2198 6.756074 TGTTTTGACAAAATCAGATGGTGAAC 59.244 34.615 16.03 0.80 39.19 3.18
1724 2199 6.462552 TTTGACAAAATCAGATGGTGAACA 57.537 33.333 0.00 0.00 39.19 3.18
1744 2220 4.397420 ACAAGAGCACCATTTGTATGTGA 58.603 39.130 0.00 0.00 33.57 3.58
1745 2221 4.826733 ACAAGAGCACCATTTGTATGTGAA 59.173 37.500 0.00 0.00 33.57 3.18
1751 2227 3.861113 CACCATTTGTATGTGAATGCTGC 59.139 43.478 0.00 0.00 33.08 5.25
1759 2237 4.943093 TGTATGTGAATGCTGCAGTTATGT 59.057 37.500 16.64 0.00 0.00 2.29
1764 2242 3.437741 TGAATGCTGCAGTTATGTGTCTG 59.562 43.478 16.64 0.00 35.12 3.51
1775 2253 0.677731 ATGTGTCTGAATGTGCCCCG 60.678 55.000 0.00 0.00 0.00 5.73
1776 2254 1.003839 GTGTCTGAATGTGCCCCGA 60.004 57.895 0.00 0.00 0.00 5.14
1782 2260 3.168237 GAATGTGCCCCGAATCGCG 62.168 63.158 0.00 0.00 40.47 5.87
1809 2287 1.339727 GGATAACGTGCAGTTTCCCCT 60.340 52.381 6.82 0.00 43.86 4.79
1830 2308 5.530171 CCCTTTTGACTGGTCTATCATCATG 59.470 44.000 2.38 0.00 0.00 3.07
1847 2325 2.935849 TCATGACATGTATGGCGTTGTC 59.064 45.455 14.98 3.57 39.17 3.18
1852 2330 3.407698 ACATGTATGGCGTTGTCTTTGA 58.592 40.909 0.00 0.00 0.00 2.69
1858 2336 0.317020 GGCGTTGTCTTTGAGTGTGC 60.317 55.000 0.00 0.00 0.00 4.57
1860 2338 1.595489 GCGTTGTCTTTGAGTGTGCTG 60.595 52.381 0.00 0.00 0.00 4.41
1861 2339 1.933181 CGTTGTCTTTGAGTGTGCTGA 59.067 47.619 0.00 0.00 0.00 4.26
1862 2340 2.285834 CGTTGTCTTTGAGTGTGCTGAC 60.286 50.000 0.00 0.00 0.00 3.51
1863 2341 1.570813 TGTCTTTGAGTGTGCTGACG 58.429 50.000 0.00 0.00 0.00 4.35
1870 2349 4.729227 TTGAGTGTGCTGACGGAATATA 57.271 40.909 0.00 0.00 0.00 0.86
1879 2358 4.102524 TGCTGACGGAATATAATGAGGGTT 59.897 41.667 0.00 0.00 0.00 4.11
1880 2359 5.063880 GCTGACGGAATATAATGAGGGTTT 58.936 41.667 0.00 0.00 0.00 3.27
1884 2363 6.099125 TGACGGAATATAATGAGGGTTTCAGA 59.901 38.462 0.00 0.00 39.68 3.27
1885 2364 6.525629 ACGGAATATAATGAGGGTTTCAGAG 58.474 40.000 0.00 0.00 39.68 3.35
1887 2366 6.299141 GGAATATAATGAGGGTTTCAGAGCA 58.701 40.000 0.00 0.00 39.68 4.26
1892 2371 2.259917 TGAGGGTTTCAGAGCAGATGA 58.740 47.619 0.00 0.00 0.00 2.92
1915 2395 4.568072 ATGGTTCTGCTGTGTGGTAATA 57.432 40.909 0.00 0.00 0.00 0.98
1928 2409 7.335924 GCTGTGTGGTAATAGATTTCCTTGTTA 59.664 37.037 0.40 0.00 0.00 2.41
1930 2411 8.598916 TGTGTGGTAATAGATTTCCTTGTTAGA 58.401 33.333 0.40 0.00 0.00 2.10
1951 2432 5.520751 AGATTAGGTAGTAGGAGCACTGTT 58.479 41.667 0.00 0.00 0.00 3.16
1955 2441 3.764972 AGGTAGTAGGAGCACTGTTTCTC 59.235 47.826 0.00 0.00 0.00 2.87
1964 2450 1.942657 GCACTGTTTCTCAACTGCTGA 59.057 47.619 0.00 0.00 35.72 4.26
1973 2459 6.369890 TGTTTCTCAACTGCTGATGTTATCTC 59.630 38.462 0.00 0.00 33.58 2.75
1978 2464 5.047092 TCAACTGCTGATGTTATCTCACTGA 60.047 40.000 0.00 0.00 0.00 3.41
1982 2468 4.573607 TGCTGATGTTATCTCACTGATTGC 59.426 41.667 0.00 0.00 36.65 3.56
1992 2478 4.520179 TCTCACTGATTGCTGCATTATGT 58.480 39.130 1.84 0.00 0.00 2.29
1994 2480 4.263435 TCACTGATTGCTGCATTATGTGA 58.737 39.130 18.97 18.97 0.00 3.58
1998 2484 3.757493 TGATTGCTGCATTATGTGACACA 59.243 39.130 11.41 11.41 0.00 3.72
2022 2508 7.719633 ACAGTGTTGTGTATAACCTGAGAATTT 59.280 33.333 12.94 0.00 35.83 1.82
2024 2510 7.936847 AGTGTTGTGTATAACCTGAGAATTTGA 59.063 33.333 0.00 0.00 0.00 2.69
2028 2515 7.331026 TGTGTATAACCTGAGAATTTGAGAGG 58.669 38.462 0.00 0.00 0.00 3.69
2029 2516 7.038302 TGTGTATAACCTGAGAATTTGAGAGGT 60.038 37.037 0.00 0.00 38.75 3.85
2030 2517 8.475639 GTGTATAACCTGAGAATTTGAGAGGTA 58.524 37.037 0.00 0.00 35.95 3.08
2031 2518 8.475639 TGTATAACCTGAGAATTTGAGAGGTAC 58.524 37.037 0.00 0.00 35.95 3.34
2108 2595 7.730364 AACGTCTTATATTTTGGCATAGAGG 57.270 36.000 0.00 0.00 0.00 3.69
2109 2596 6.827727 ACGTCTTATATTTTGGCATAGAGGT 58.172 36.000 0.00 0.00 0.00 3.85
2110 2597 7.959175 ACGTCTTATATTTTGGCATAGAGGTA 58.041 34.615 0.00 0.00 0.00 3.08
2111 2598 8.088981 ACGTCTTATATTTTGGCATAGAGGTAG 58.911 37.037 0.00 0.00 0.00 3.18
2112 2599 8.088981 CGTCTTATATTTTGGCATAGAGGTAGT 58.911 37.037 0.00 0.00 0.00 2.73
2115 2602 9.372369 CTTATATTTTGGCATAGAGGTAGTAGC 57.628 37.037 0.00 0.00 0.00 3.58
2116 2603 5.630415 ATTTTGGCATAGAGGTAGTAGCA 57.370 39.130 1.58 0.00 0.00 3.49
2117 2604 5.429681 TTTTGGCATAGAGGTAGTAGCAA 57.570 39.130 1.58 0.00 0.00 3.91
2118 2605 5.429681 TTTGGCATAGAGGTAGTAGCAAA 57.570 39.130 1.58 0.00 0.00 3.68
2124 2611 6.990349 GGCATAGAGGTAGTAGCAAATTGTTA 59.010 38.462 1.58 0.00 0.00 2.41
2126 2613 8.552034 GCATAGAGGTAGTAGCAAATTGTTAAG 58.448 37.037 1.58 0.00 0.00 1.85
2128 2615 7.253905 AGAGGTAGTAGCAAATTGTTAAGGA 57.746 36.000 1.58 0.00 0.00 3.36
2129 2616 7.104290 AGAGGTAGTAGCAAATTGTTAAGGAC 58.896 38.462 1.58 0.00 0.00 3.85
2132 2619 6.653740 GGTAGTAGCAAATTGTTAAGGACTGT 59.346 38.462 0.00 0.00 0.00 3.55
2133 2620 6.803154 AGTAGCAAATTGTTAAGGACTGTC 57.197 37.500 0.00 0.00 0.00 3.51
2138 2625 5.634859 GCAAATTGTTAAGGACTGTCCATTG 59.365 40.000 27.48 17.39 39.61 2.82
2141 2628 2.107378 TGTTAAGGACTGTCCATTGCCA 59.893 45.455 27.48 14.25 39.61 4.92
2143 2630 2.134789 AAGGACTGTCCATTGCCATC 57.865 50.000 27.48 0.00 39.61 3.51
2145 2632 1.097547 GGACTGTCCATTGCCATCCG 61.098 60.000 21.70 0.00 36.28 4.18
2157 2648 4.322080 TTGCCATCCGTTGTAGATAGAG 57.678 45.455 0.00 0.00 0.00 2.43
2160 2651 4.051922 GCCATCCGTTGTAGATAGAGTTG 58.948 47.826 0.00 0.00 0.00 3.16
2168 2659 6.073222 CCGTTGTAGATAGAGTTGCACTTTTT 60.073 38.462 0.00 0.00 0.00 1.94
2208 2702 6.360370 TTCTGTAGAGTAATGCTCCACTTT 57.640 37.500 0.00 0.00 45.21 2.66
2255 2749 3.903467 AGTATTCCAAATTGAGGCCCTC 58.097 45.455 2.98 2.98 0.00 4.30
2257 2751 1.923356 TTCCAAATTGAGGCCCTCAC 58.077 50.000 14.43 0.00 40.46 3.51
2274 2768 3.123620 CCAGCAGCGCCTCTTGTC 61.124 66.667 2.29 0.00 0.00 3.18
2278 2772 1.963338 GCAGCGCCTCTTGTCTTGT 60.963 57.895 2.29 0.00 0.00 3.16
2283 2777 1.537202 GCGCCTCTTGTCTTGTTTCAT 59.463 47.619 0.00 0.00 0.00 2.57
2287 2781 5.619981 GCGCCTCTTGTCTTGTTTCATTATT 60.620 40.000 0.00 0.00 0.00 1.40
2344 2841 6.072175 TGTTCTACTGTTTTCAAGTGCTTGTT 60.072 34.615 11.17 0.00 41.16 2.83
2345 2842 6.509418 TCTACTGTTTTCAAGTGCTTGTTT 57.491 33.333 11.17 0.00 41.16 2.83
2346 2843 6.551736 TCTACTGTTTTCAAGTGCTTGTTTC 58.448 36.000 11.17 3.21 41.16 2.78
2347 2844 4.494484 ACTGTTTTCAAGTGCTTGTTTCC 58.506 39.130 11.17 1.22 41.16 3.13
2348 2845 4.220602 ACTGTTTTCAAGTGCTTGTTTCCT 59.779 37.500 11.17 0.00 41.16 3.36
2349 2846 5.146010 TGTTTTCAAGTGCTTGTTTCCTT 57.854 34.783 11.17 0.00 41.16 3.36
2350 2847 4.928615 TGTTTTCAAGTGCTTGTTTCCTTG 59.071 37.500 11.17 0.00 41.16 3.61
2351 2848 4.799564 TTTCAAGTGCTTGTTTCCTTGT 57.200 36.364 11.17 0.00 41.16 3.16
2358 2855 9.920949 TCAAGTGCTTGTTTCCTTGTTGGAATG 62.921 40.741 11.17 0.00 44.85 2.67
2367 2864 2.426738 CCTTGTTGGAATGTGTGTGTGT 59.573 45.455 0.00 0.00 38.35 3.72
2368 2865 3.437428 CTTGTTGGAATGTGTGTGTGTG 58.563 45.455 0.00 0.00 0.00 3.82
2372 2869 1.742268 TGGAATGTGTGTGTGTGTGTG 59.258 47.619 0.00 0.00 0.00 3.82
2374 2871 2.477694 GGAATGTGTGTGTGTGTGTGTG 60.478 50.000 0.00 0.00 0.00 3.82
2375 2872 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2376 2873 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2377 2874 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2378 2875 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2380 2877 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2381 2878 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2382 2879 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2397 2908 6.197096 GTGTGTGTGTGAATGTCTTGAAATTC 59.803 38.462 6.59 6.59 34.11 2.17
2398 2909 5.687285 GTGTGTGTGAATGTCTTGAAATTCC 59.313 40.000 10.11 4.05 32.81 3.01
2405 2916 1.202114 TGTCTTGAAATTCCGGCATGC 59.798 47.619 9.90 9.90 0.00 4.06
2422 2933 1.363807 GCGCCATTTCCCCTTATGC 59.636 57.895 0.00 0.00 0.00 3.14
2428 2939 2.546373 CCATTTCCCCTTATGCATTGCG 60.546 50.000 3.54 0.00 0.00 4.85
2444 2955 1.222300 TGCGTTGAAATGTGTAGCGT 58.778 45.000 0.00 0.00 0.00 5.07
2464 2975 6.612306 AGCGTCCTGAATTGAAGATAAAAAC 58.388 36.000 0.00 0.00 0.00 2.43
2638 3153 2.231964 GGAGGCATTTCTCAACATGCAA 59.768 45.455 6.48 0.00 46.53 4.08
2645 3160 5.657474 CATTTCTCAACATGCAAGCCTAAT 58.343 37.500 0.00 0.00 0.00 1.73
2666 3181 2.091885 TCCTCTTGCAAAAGGGAACAGT 60.092 45.455 18.78 0.00 33.21 3.55
2785 3300 1.407979 GCCCAAATCCAAGCAGATCAG 59.592 52.381 0.00 0.00 0.00 2.90
2906 3421 0.464036 CGCTAGGCCCTGTCATAACA 59.536 55.000 0.00 0.00 0.00 2.41
2981 3496 0.615331 TGATCTTCCTCAGTGCCACC 59.385 55.000 0.00 0.00 0.00 4.61
3026 3541 0.687920 TGAGCCCGTACATCCACAAA 59.312 50.000 0.00 0.00 0.00 2.83
3062 3577 0.319900 GTTCAGACAGCTTCGAGGCA 60.320 55.000 22.42 0.00 34.17 4.75
3125 3640 0.403271 AGTTTGCTGACATCAGGCCT 59.597 50.000 0.00 0.00 43.94 5.19
3134 3649 3.474570 ATCAGGCCTGCGGAGACC 61.475 66.667 28.91 2.23 0.00 3.85
3161 3676 0.035458 CTTTCGTCACCTTCAGGGCT 59.965 55.000 0.00 0.00 40.27 5.19
3162 3677 1.275291 CTTTCGTCACCTTCAGGGCTA 59.725 52.381 0.00 0.00 40.27 3.93
3164 3679 1.568504 TCGTCACCTTCAGGGCTAAT 58.431 50.000 0.00 0.00 40.27 1.73
3169 3684 1.133976 CACCTTCAGGGCTAATGGGAG 60.134 57.143 0.00 0.00 40.27 4.30
3198 3713 3.587095 TCGACGCCGATCACTTCT 58.413 55.556 0.00 0.00 40.30 2.85
3239 3754 2.726351 GCTCACGCCTAAGCTCCCT 61.726 63.158 0.00 0.00 35.60 4.20
3274 3789 3.819368 TCAAGAACTTGTGATGGAAGCA 58.181 40.909 13.15 0.00 41.16 3.91
3286 3801 3.698539 TGATGGAAGCAACTGTTTTGACA 59.301 39.130 0.00 0.00 0.00 3.58
3307 3822 2.028112 AGCATTCGTGCTCTTGAACCTA 60.028 45.455 0.00 0.00 42.12 3.08
3320 3835 2.656002 TGAACCTAGCTGAGCTATCGT 58.344 47.619 15.42 11.21 40.54 3.73
3321 3836 2.619177 TGAACCTAGCTGAGCTATCGTC 59.381 50.000 15.42 12.09 40.54 4.20
3322 3837 1.611519 ACCTAGCTGAGCTATCGTCC 58.388 55.000 15.42 0.00 40.54 4.79
3323 3838 1.144093 ACCTAGCTGAGCTATCGTCCT 59.856 52.381 15.42 0.00 40.54 3.85
3324 3839 2.235016 CCTAGCTGAGCTATCGTCCTT 58.765 52.381 15.42 0.00 40.54 3.36
3325 3840 2.625790 CCTAGCTGAGCTATCGTCCTTT 59.374 50.000 15.42 0.00 40.54 3.11
3384 3899 5.975282 TGTGGTATTACGGTATTGCTGTTA 58.025 37.500 0.00 0.00 37.88 2.41
3388 3903 8.066000 GTGGTATTACGGTATTGCTGTTATTTC 58.934 37.037 0.00 0.00 37.88 2.17
3389 3904 7.227116 TGGTATTACGGTATTGCTGTTATTTCC 59.773 37.037 0.00 0.00 37.88 3.13
3391 3906 4.957759 ACGGTATTGCTGTTATTTCCAC 57.042 40.909 0.00 0.00 31.36 4.02
3393 3908 4.634443 ACGGTATTGCTGTTATTTCCACTC 59.366 41.667 0.00 0.00 31.36 3.51
3414 3930 3.772572 TCCATACGGAGGTTTGAGAATCA 59.227 43.478 0.00 0.00 39.34 2.57
3469 3988 7.044510 CGATTTTGAATAAGTAGCAGCAACATG 60.045 37.037 0.00 0.00 0.00 3.21
3470 3989 4.621068 TGAATAAGTAGCAGCAACATGC 57.379 40.909 0.00 0.00 46.88 4.06
3486 4007 0.994247 ATGCCCCTCTGTGTGATTGA 59.006 50.000 0.00 0.00 0.00 2.57
3496 4017 5.991606 CCTCTGTGTGATTGACAGTTTAGAA 59.008 40.000 0.00 0.00 41.43 2.10
3499 4020 6.650807 TCTGTGTGATTGACAGTTTAGAATCC 59.349 38.462 0.00 0.00 41.43 3.01
3511 4032 6.051717 CAGTTTAGAATCCCAGTGGTATCTG 58.948 44.000 8.74 0.00 32.45 2.90
3517 4038 1.086696 CCCAGTGGTATCTGTTTGCG 58.913 55.000 8.74 0.00 34.02 4.85
3518 4039 1.338674 CCCAGTGGTATCTGTTTGCGA 60.339 52.381 8.74 0.00 34.02 5.10
3527 4048 6.312918 GTGGTATCTGTTTGCGATTTCTCTTA 59.687 38.462 0.00 0.00 0.00 2.10
3531 4052 7.672983 ATCTGTTTGCGATTTCTCTTAAAGA 57.327 32.000 0.00 0.00 0.00 2.52
3533 4054 7.521529 TCTGTTTGCGATTTCTCTTAAAGATG 58.478 34.615 0.00 0.00 32.82 2.90
3536 4057 6.801539 TTGCGATTTCTCTTAAAGATGTGT 57.198 33.333 0.00 0.00 32.82 3.72
3570 4091 7.822334 TGTTCTACTATTTGGTATCTGTTGTGG 59.178 37.037 0.00 0.00 0.00 4.17
3574 4095 6.349300 ACTATTTGGTATCTGTTGTGGCTAG 58.651 40.000 0.00 0.00 0.00 3.42
3588 4109 3.507622 TGTGGCTAGATACTCATGATCGG 59.492 47.826 0.00 0.00 0.00 4.18
3656 4177 2.237143 TCACGAGATTGAGCCCTTCATT 59.763 45.455 0.00 0.00 35.27 2.57
3657 4178 2.611292 CACGAGATTGAGCCCTTCATTC 59.389 50.000 0.00 0.00 36.75 2.67
3658 4179 2.237143 ACGAGATTGAGCCCTTCATTCA 59.763 45.455 0.00 0.00 38.21 2.57
3659 4180 3.118112 ACGAGATTGAGCCCTTCATTCAT 60.118 43.478 0.00 0.00 38.21 2.57
3660 4181 3.250280 CGAGATTGAGCCCTTCATTCATG 59.750 47.826 0.00 0.00 38.21 3.07
3661 4182 4.205587 GAGATTGAGCCCTTCATTCATGT 58.794 43.478 0.00 0.00 38.21 3.21
3662 4183 5.371526 GAGATTGAGCCCTTCATTCATGTA 58.628 41.667 0.00 0.00 38.21 2.29
3663 4184 5.759059 AGATTGAGCCCTTCATTCATGTAA 58.241 37.500 0.00 0.00 38.21 2.41
3664 4185 5.826737 AGATTGAGCCCTTCATTCATGTAAG 59.173 40.000 0.00 0.00 38.21 2.34
3665 4186 4.842531 TGAGCCCTTCATTCATGTAAGA 57.157 40.909 0.00 0.00 0.00 2.10
3666 4187 5.378230 TGAGCCCTTCATTCATGTAAGAT 57.622 39.130 0.00 0.00 0.00 2.40
3667 4188 5.371526 TGAGCCCTTCATTCATGTAAGATC 58.628 41.667 0.00 0.00 0.00 2.75
3668 4189 4.384056 AGCCCTTCATTCATGTAAGATCG 58.616 43.478 0.00 0.00 0.00 3.69
3669 4190 4.101585 AGCCCTTCATTCATGTAAGATCGA 59.898 41.667 0.00 0.00 0.00 3.59
3670 4191 4.450419 GCCCTTCATTCATGTAAGATCGAG 59.550 45.833 0.00 0.00 0.00 4.04
3671 4192 4.450419 CCCTTCATTCATGTAAGATCGAGC 59.550 45.833 0.00 0.00 0.00 5.03
3672 4193 4.450419 CCTTCATTCATGTAAGATCGAGCC 59.550 45.833 0.00 0.00 0.00 4.70
3673 4194 3.995199 TCATTCATGTAAGATCGAGCCC 58.005 45.455 0.00 0.00 0.00 5.19
3674 4195 3.643320 TCATTCATGTAAGATCGAGCCCT 59.357 43.478 0.00 0.00 0.00 5.19
3675 4196 4.101585 TCATTCATGTAAGATCGAGCCCTT 59.898 41.667 0.00 0.00 0.00 3.95
3676 4197 3.735237 TCATGTAAGATCGAGCCCTTC 57.265 47.619 0.00 0.00 0.00 3.46
3677 4198 3.031013 TCATGTAAGATCGAGCCCTTCA 58.969 45.455 0.00 0.00 0.00 3.02
3678 4199 3.643320 TCATGTAAGATCGAGCCCTTCAT 59.357 43.478 0.00 0.00 0.00 2.57
3694 4215 4.996122 CCCTTCATCTCTACAGATTCATGC 59.004 45.833 0.00 0.00 37.25 4.06
3722 4246 0.944386 TGCTTCGTCTTGCAACTTCC 59.056 50.000 0.00 0.00 36.15 3.46
3739 4263 4.003648 ACTTCCGAAACAAAGCTATCCAG 58.996 43.478 0.00 0.00 0.00 3.86
3756 4280 7.378966 GCTATCCAGAGCTATATTACACACAA 58.621 38.462 0.00 0.00 39.50 3.33
3789 4315 2.196742 AGGAATAGTCATCCTGGGCA 57.803 50.000 0.00 0.00 45.60 5.36
3810 4336 4.629092 CAGTATGCTATGTGATGAGTGCT 58.371 43.478 0.00 0.00 0.00 4.40
3821 4348 5.414360 TGTGATGAGTGCTTCTGAATAGTC 58.586 41.667 0.00 0.00 0.00 2.59
3824 4351 5.655974 TGATGAGTGCTTCTGAATAGTCTCT 59.344 40.000 0.00 0.00 0.00 3.10
3829 4356 5.424895 AGTGCTTCTGAATAGTCTCTGGATT 59.575 40.000 0.00 0.00 0.00 3.01
3836 4363 2.680312 TAGTCTCTGGATTGCTGCAC 57.320 50.000 0.00 0.00 0.00 4.57
3841 4368 2.076100 CTCTGGATTGCTGCACGTTTA 58.924 47.619 0.00 0.00 0.00 2.01
3842 4369 2.483877 CTCTGGATTGCTGCACGTTTAA 59.516 45.455 0.00 0.00 0.00 1.52
3843 4370 2.881513 TCTGGATTGCTGCACGTTTAAA 59.118 40.909 0.00 0.00 0.00 1.52
3854 4381 3.854809 TGCACGTTTAAACTGCTTCAAAC 59.145 39.130 27.56 10.61 35.52 2.93
3861 4395 5.751243 TTAAACTGCTTCAAACTGAGTCC 57.249 39.130 0.00 0.00 0.00 3.85
3863 4397 1.412710 ACTGCTTCAAACTGAGTCCGA 59.587 47.619 0.00 0.00 0.00 4.55
3864 4398 1.795286 CTGCTTCAAACTGAGTCCGAC 59.205 52.381 0.00 0.00 0.00 4.79
3870 4404 3.612371 AACTGAGTCCGACGCGCTC 62.612 63.158 5.73 4.66 0.00 5.03
3878 4412 4.462417 CGACGCGCTCTCCTTCGT 62.462 66.667 5.73 0.00 37.92 3.85
3882 4419 2.507324 GCGCTCTCCTTCGTCACC 60.507 66.667 0.00 0.00 0.00 4.02
3893 4430 2.352814 CCTTCGTCACCTGGTACTTCAG 60.353 54.545 0.00 0.00 34.70 3.02
3912 4449 1.938861 CCCCTTGTTGTCGTTGTCG 59.061 57.895 0.00 0.00 38.55 4.35
3920 4457 3.225272 TGTCGTTGTCGGCATCAAT 57.775 47.368 0.00 0.00 46.84 2.57
3921 4458 0.795698 TGTCGTTGTCGGCATCAATG 59.204 50.000 0.00 5.01 46.84 2.82
3942 4479 0.309302 AGATCGTCGAGCCTTCATCG 59.691 55.000 6.92 0.00 41.50 3.84
4046 4583 9.476202 GTACATCTGCATGACACAAAGTATATA 57.524 33.333 0.00 0.00 33.72 0.86
4051 4588 7.992608 TCTGCATGACACAAAGTATATATGGTT 59.007 33.333 0.00 0.00 0.00 3.67
4052 4589 9.271828 CTGCATGACACAAAGTATATATGGTTA 57.728 33.333 0.00 0.00 0.00 2.85
4053 4590 9.271828 TGCATGACACAAAGTATATATGGTTAG 57.728 33.333 0.00 0.00 0.00 2.34
4054 4591 9.489084 GCATGACACAAAGTATATATGGTTAGA 57.511 33.333 0.00 0.00 0.00 2.10
4085 4622 7.633193 TTACCACCCAATATGTACATGAAAC 57.367 36.000 18.81 0.00 0.00 2.78
4087 4624 6.194235 ACCACCCAATATGTACATGAAACAT 58.806 36.000 18.81 18.05 40.57 2.71
4093 4630 7.415095 CCCAATATGTACATGAAACATGTTCGT 60.415 37.037 18.81 17.65 36.79 3.85
4101 4638 9.388346 GTACATGAAACATGTTCGTTATTTCAA 57.612 29.630 19.75 0.00 41.27 2.69
4105 4642 8.781067 TGAAACATGTTCGTTATTTCAAAGAG 57.219 30.769 12.39 0.00 36.58 2.85
4110 4647 7.441157 ACATGTTCGTTATTTCAAAGAGTGAGA 59.559 33.333 0.00 0.00 37.61 3.27
4121 4658 7.467854 TTCAAAGAGTGAGACGCATGGTACA 62.468 44.000 0.00 0.00 39.80 2.90
4151 4688 8.768955 CACTGGAAGAAGATGCAATATACTTAC 58.231 37.037 0.00 0.00 37.43 2.34
4160 4697 8.435931 AGATGCAATATACTTACTGGGTCATA 57.564 34.615 0.00 0.00 0.00 2.15
4188 4725 4.460731 TCCGACAAAATAACATCCAATGCA 59.539 37.500 0.00 0.00 0.00 3.96
4191 4728 5.149973 ACAAAATAACATCCAATGCAGCA 57.850 34.783 0.00 0.00 0.00 4.41
4260 4797 4.502259 GCGTCCTTCATCTGGATATTCACT 60.502 45.833 0.00 0.00 35.87 3.41
4275 4812 3.533606 TTCACTATCTCCTTCAGCTGC 57.466 47.619 9.47 0.00 0.00 5.25
4304 4841 1.571919 AGCGGCTCGAATATCACAAC 58.428 50.000 0.00 0.00 0.00 3.32
4325 4862 0.884514 TCGCTCAGTCTGTTGAGGAG 59.115 55.000 0.00 0.00 43.80 3.69
4329 4866 2.611722 GCTCAGTCTGTTGAGGAGTTCC 60.612 54.545 0.00 0.00 43.80 3.62
4352 4889 4.510571 GGCTTGAAGTATTTCCGAACCTA 58.489 43.478 0.00 0.00 32.09 3.08
4353 4890 4.331992 GGCTTGAAGTATTTCCGAACCTAC 59.668 45.833 0.00 0.00 32.09 3.18
4354 4891 4.933400 GCTTGAAGTATTTCCGAACCTACA 59.067 41.667 0.00 0.00 32.09 2.74
4355 4892 5.163884 GCTTGAAGTATTTCCGAACCTACAC 60.164 44.000 0.00 0.00 32.09 2.90
4356 4893 4.824289 TGAAGTATTTCCGAACCTACACC 58.176 43.478 0.00 0.00 32.09 4.16
4357 4894 4.283978 TGAAGTATTTCCGAACCTACACCA 59.716 41.667 0.00 0.00 32.09 4.17
4365 4902 2.032426 CCGAACCTACACCAACAAACAC 59.968 50.000 0.00 0.00 0.00 3.32
4367 4904 3.314080 CGAACCTACACCAACAAACACAT 59.686 43.478 0.00 0.00 0.00 3.21
4375 4912 4.218265 CACCAACAAACACATATGACACG 58.782 43.478 10.38 0.00 0.00 4.49
4383 4920 2.766263 ACACATATGACACGGGATCAGT 59.234 45.455 10.38 0.00 0.00 3.41
4393 4930 3.199071 ACACGGGATCAGTAAATGGCTTA 59.801 43.478 0.00 0.00 0.00 3.09
4394 4931 4.196193 CACGGGATCAGTAAATGGCTTAA 58.804 43.478 0.00 0.00 0.00 1.85
4400 4937 7.860872 CGGGATCAGTAAATGGCTTAATTTTAC 59.139 37.037 0.00 0.00 36.52 2.01
4436 4977 6.295249 TGTTTCACATACCTGTTTCATGAGA 58.705 36.000 0.00 0.00 31.62 3.27
4439 4980 5.491070 TCACATACCTGTTTCATGAGAAGG 58.509 41.667 15.32 15.32 34.71 3.46
4455 4996 3.554934 AGAAGGTCATGTGCAACTTTCA 58.445 40.909 12.08 0.00 38.04 2.69
4459 5000 2.226437 GGTCATGTGCAACTTTCATCGT 59.774 45.455 0.00 0.00 38.04 3.73
4461 5002 1.980844 CATGTGCAACTTTCATCGTGC 59.019 47.619 0.00 0.00 38.04 5.34
4467 5008 2.030805 GCAACTTTCATCGTGCTTCCTT 60.031 45.455 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.045911 AAGAGGAGGCGGAGGATGAC 61.046 60.000 0.00 0.00 0.00 3.06
63 64 0.839277 CCAGCATAGGACCATCACCA 59.161 55.000 0.00 0.00 0.00 4.17
64 65 0.536006 GCCAGCATAGGACCATCACC 60.536 60.000 0.00 0.00 0.00 4.02
132 133 1.452368 TGCCGGTAAAGCAGTTCCA 59.548 52.632 1.90 0.00 34.69 3.53
213 217 4.421554 CCTCCCCCTCCTCCTGCA 62.422 72.222 0.00 0.00 0.00 4.41
273 277 1.448717 GGAGCTCCAGAAGAACGCC 60.449 63.158 28.43 0.00 35.64 5.68
706 734 4.697756 TTGCCAGGTTCCGCCTCG 62.698 66.667 0.00 0.00 46.96 4.63
713 741 2.669569 TGCTCGCTTGCCAGGTTC 60.670 61.111 0.00 0.00 0.00 3.62
719 747 2.046314 TAACCCTGCTCGCTTGCC 60.046 61.111 0.00 0.00 0.00 4.52
725 753 1.522569 CCCTTCCTAACCCTGCTCG 59.477 63.158 0.00 0.00 0.00 5.03
728 761 1.618447 TCCCCCTTCCTAACCCTGC 60.618 63.158 0.00 0.00 0.00 4.85
730 763 1.307953 GCTCCCCCTTCCTAACCCT 60.308 63.158 0.00 0.00 0.00 4.34
735 768 4.089757 AGCCGCTCCCCCTTCCTA 62.090 66.667 0.00 0.00 0.00 2.94
853 901 1.284408 CGCCTCTATCTCTCGCACC 59.716 63.158 0.00 0.00 0.00 5.01
854 902 1.284408 CCGCCTCTATCTCTCGCAC 59.716 63.158 0.00 0.00 0.00 5.34
855 903 2.556459 GCCGCCTCTATCTCTCGCA 61.556 63.158 0.00 0.00 0.00 5.10
856 904 2.257067 GCCGCCTCTATCTCTCGC 59.743 66.667 0.00 0.00 0.00 5.03
857 905 1.906994 CTCGCCGCCTCTATCTCTCG 61.907 65.000 0.00 0.00 0.00 4.04
862 910 4.708968 CCGCTCGCCGCCTCTATC 62.709 72.222 0.00 0.00 35.03 2.08
869 917 3.419759 TTTTCTTCCGCTCGCCGC 61.420 61.111 0.00 0.00 35.03 6.53
870 918 2.474712 GTTTTCTTCCGCTCGCCG 59.525 61.111 0.00 0.00 0.00 6.46
874 922 2.096367 GGACTTTCGTTTTCTTCCGCTC 60.096 50.000 0.00 0.00 0.00 5.03
878 926 4.895224 AGTTGGACTTTCGTTTTCTTCC 57.105 40.909 0.00 0.00 0.00 3.46
879 927 5.526479 ACCTAGTTGGACTTTCGTTTTCTTC 59.474 40.000 0.00 0.00 39.71 2.87
888 936 5.243981 GGTTCCTTACCTAGTTGGACTTTC 58.756 45.833 0.00 0.00 44.10 2.62
898 946 2.108970 AGAAGCCGGTTCCTTACCTAG 58.891 52.381 1.90 0.00 45.40 3.02
903 963 1.337447 CGACAAGAAGCCGGTTCCTTA 60.337 52.381 1.90 0.00 35.51 2.69
928 989 1.274712 CCAAGTCTGAGAGAAGGCCT 58.725 55.000 0.00 0.00 0.00 5.19
955 1016 4.329545 GGCTGTGAACTGGGCCGA 62.330 66.667 0.00 0.00 35.08 5.54
979 1040 1.134098 GCCTGGGCTTAACTGAGCATA 60.134 52.381 4.12 0.00 44.49 3.14
980 1041 0.394899 GCCTGGGCTTAACTGAGCAT 60.395 55.000 4.12 0.00 44.49 3.79
981 1042 1.002134 GCCTGGGCTTAACTGAGCA 60.002 57.895 4.12 0.00 44.49 4.26
982 1043 1.750780 GGCCTGGGCTTAACTGAGC 60.751 63.158 13.80 0.00 41.96 4.26
984 1045 2.966732 CGGGCCTGGGCTTAACTGA 61.967 63.158 20.47 0.00 41.60 3.41
1006 1162 3.726607 AGAATGAGAATGACGATGCTCC 58.273 45.455 0.00 0.00 33.54 4.70
1011 1167 4.202305 GGGAAGGAGAATGAGAATGACGAT 60.202 45.833 0.00 0.00 0.00 3.73
1026 1182 2.588989 GAGCAGCAGGGGAAGGAG 59.411 66.667 0.00 0.00 0.00 3.69
1027 1183 3.011517 GGAGCAGCAGGGGAAGGA 61.012 66.667 0.00 0.00 0.00 3.36
1028 1184 3.013932 AGGAGCAGCAGGGGAAGG 61.014 66.667 0.00 0.00 0.00 3.46
1029 1185 2.588989 GAGGAGCAGCAGGGGAAG 59.411 66.667 0.00 0.00 0.00 3.46
1030 1186 3.011517 GGAGGAGCAGCAGGGGAA 61.012 66.667 0.00 0.00 0.00 3.97
1040 1196 1.904990 GAAGAGTGGTGGGGAGGAGC 61.905 65.000 0.00 0.00 0.00 4.70
1042 1198 0.252284 GAGAAGAGTGGTGGGGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
1043 1199 1.608717 CGAGAAGAGTGGTGGGGAGG 61.609 65.000 0.00 0.00 0.00 4.30
1044 1200 1.893786 CGAGAAGAGTGGTGGGGAG 59.106 63.158 0.00 0.00 0.00 4.30
1045 1201 2.283529 GCGAGAAGAGTGGTGGGGA 61.284 63.158 0.00 0.00 0.00 4.81
1046 1202 2.266055 GCGAGAAGAGTGGTGGGG 59.734 66.667 0.00 0.00 0.00 4.96
1063 1220 3.692370 CTAGGGTTTTCGGGGCGGG 62.692 68.421 0.00 0.00 0.00 6.13
1064 1221 2.124860 CTAGGGTTTTCGGGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
1069 1236 4.127907 GGAGAATTAGCTAGGGTTTTCGG 58.872 47.826 0.00 0.00 0.00 4.30
1072 1239 3.856206 TGGGGAGAATTAGCTAGGGTTTT 59.144 43.478 0.00 0.00 0.00 2.43
1085 1252 2.505982 CGTCGCCATGGGGAGAAT 59.494 61.111 30.30 0.00 45.07 2.40
1086 1253 3.781307 CCGTCGCCATGGGGAGAA 61.781 66.667 30.30 8.21 45.07 2.87
1309 1677 0.661552 GCAGCAGAATCGCATCACAT 59.338 50.000 0.00 0.00 0.00 3.21
1315 1683 0.460811 CACTAGGCAGCAGAATCGCA 60.461 55.000 0.00 0.00 0.00 5.10
1337 1705 5.596763 ACACCTAATCAAACTAGGGGACTA 58.403 41.667 5.16 0.00 41.83 2.59
1399 1777 4.096231 TCAATCAATTGGCCAGATAACACG 59.904 41.667 5.11 0.00 38.30 4.49
1426 1809 7.279758 AGACCAACACCAACAAATAACAATTTG 59.720 33.333 8.83 8.83 44.65 2.32
1430 1842 5.419155 TCAGACCAACACCAACAAATAACAA 59.581 36.000 0.00 0.00 0.00 2.83
1433 1845 6.531503 TTTCAGACCAACACCAACAAATAA 57.468 33.333 0.00 0.00 0.00 1.40
1434 1846 6.462207 CCATTTCAGACCAACACCAACAAATA 60.462 38.462 0.00 0.00 0.00 1.40
1436 1848 4.382470 CCATTTCAGACCAACACCAACAAA 60.382 41.667 0.00 0.00 0.00 2.83
1440 1852 3.025322 ACCATTTCAGACCAACACCAA 57.975 42.857 0.00 0.00 0.00 3.67
1447 1859 2.026262 GGCTCCTAACCATTTCAGACCA 60.026 50.000 0.00 0.00 0.00 4.02
1455 1895 0.927029 GGGGAAGGCTCCTAACCATT 59.073 55.000 11.97 0.00 42.05 3.16
1456 1896 0.994050 GGGGGAAGGCTCCTAACCAT 60.994 60.000 11.97 0.00 42.05 3.55
1466 1906 1.076705 GATGAACCAGGGGGAAGGC 60.077 63.158 0.00 0.00 38.05 4.35
1468 1908 2.834638 AATGATGAACCAGGGGGAAG 57.165 50.000 0.00 0.00 38.05 3.46
1469 1909 3.558608 AAAATGATGAACCAGGGGGAA 57.441 42.857 0.00 0.00 38.05 3.97
1470 1910 3.627237 GCTAAAATGATGAACCAGGGGGA 60.627 47.826 0.00 0.00 38.05 4.81
1471 1911 2.695147 GCTAAAATGATGAACCAGGGGG 59.305 50.000 0.00 0.00 41.29 5.40
1475 1915 4.201990 GCTCTGGCTAAAATGATGAACCAG 60.202 45.833 0.00 0.00 43.65 4.00
1476 1916 3.696051 GCTCTGGCTAAAATGATGAACCA 59.304 43.478 0.00 0.00 35.22 3.67
1477 1917 4.298744 GCTCTGGCTAAAATGATGAACC 57.701 45.455 0.00 0.00 35.22 3.62
1521 1965 6.568462 CGAAACCAGATTAAGCAGAACAACAT 60.568 38.462 0.00 0.00 0.00 2.71
1526 1970 4.712763 CACGAAACCAGATTAAGCAGAAC 58.287 43.478 0.00 0.00 0.00 3.01
1527 1971 3.188460 GCACGAAACCAGATTAAGCAGAA 59.812 43.478 0.00 0.00 0.00 3.02
1529 1973 2.744202 AGCACGAAACCAGATTAAGCAG 59.256 45.455 0.00 0.00 0.00 4.24
1536 1980 4.273148 AGTTAAGAGCACGAAACCAGAT 57.727 40.909 0.00 0.00 0.00 2.90
1537 1981 3.746045 AGTTAAGAGCACGAAACCAGA 57.254 42.857 0.00 0.00 0.00 3.86
1539 1983 2.798283 CGAAGTTAAGAGCACGAAACCA 59.202 45.455 0.00 0.00 0.00 3.67
1544 1988 3.503363 TCCTTACGAAGTTAAGAGCACGA 59.497 43.478 0.00 0.00 37.78 4.35
1545 1989 3.829948 TCCTTACGAAGTTAAGAGCACG 58.170 45.455 0.00 0.00 37.78 5.34
1546 1990 6.723131 ATTTCCTTACGAAGTTAAGAGCAC 57.277 37.500 0.00 0.00 37.78 4.40
1547 1991 7.227910 ACAAATTTCCTTACGAAGTTAAGAGCA 59.772 33.333 0.00 0.00 37.78 4.26
1548 1992 7.582352 ACAAATTTCCTTACGAAGTTAAGAGC 58.418 34.615 0.00 0.00 37.78 4.09
1573 2017 5.251764 GGCGATGGGAGTACTAGTAGATTA 58.748 45.833 1.87 0.00 0.00 1.75
1574 2018 4.080687 GGCGATGGGAGTACTAGTAGATT 58.919 47.826 1.87 0.00 0.00 2.40
1580 2054 0.469331 TGGGGCGATGGGAGTACTAG 60.469 60.000 0.00 0.00 0.00 2.57
1585 2059 0.190069 TACTATGGGGCGATGGGAGT 59.810 55.000 0.00 0.00 0.00 3.85
1587 2061 2.932184 TATACTATGGGGCGATGGGA 57.068 50.000 0.00 0.00 0.00 4.37
1589 2063 4.405680 TGATCTTATACTATGGGGCGATGG 59.594 45.833 0.00 0.00 0.00 3.51
1591 2065 6.814954 AATGATCTTATACTATGGGGCGAT 57.185 37.500 0.00 0.00 0.00 4.58
1594 2068 5.945784 TGCAAATGATCTTATACTATGGGGC 59.054 40.000 0.00 0.00 0.00 5.80
1595 2069 7.362401 GCTTGCAAATGATCTTATACTATGGGG 60.362 40.741 0.00 0.00 0.00 4.96
1596 2070 7.392673 AGCTTGCAAATGATCTTATACTATGGG 59.607 37.037 0.00 0.00 0.00 4.00
1597 2071 8.332996 AGCTTGCAAATGATCTTATACTATGG 57.667 34.615 0.00 0.00 0.00 2.74
1633 2107 8.726988 GCACACAATTTGTAAAGAATAGTAGGA 58.273 33.333 0.86 0.00 35.67 2.94
1634 2108 8.511321 TGCACACAATTTGTAAAGAATAGTAGG 58.489 33.333 0.86 0.00 35.67 3.18
1635 2109 9.329913 GTGCACACAATTTGTAAAGAATAGTAG 57.670 33.333 13.17 0.00 35.67 2.57
1636 2110 8.841300 TGTGCACACAATTTGTAAAGAATAGTA 58.159 29.630 17.42 0.00 38.56 1.82
1637 2111 7.711846 TGTGCACACAATTTGTAAAGAATAGT 58.288 30.769 17.42 0.00 38.56 2.12
1638 2112 8.572828 TTGTGCACACAATTTGTAAAGAATAG 57.427 30.769 21.56 0.00 45.42 1.73
1653 2127 0.679321 TGGTTCTGCTTGTGCACACA 60.679 50.000 21.56 14.58 45.31 3.72
1662 2136 3.084786 GAGCAAATAGGTGGTTCTGCTT 58.915 45.455 0.00 0.00 40.10 3.91
1681 2155 2.194800 ACACTATCACACGATGCGAG 57.805 50.000 0.00 0.00 32.73 5.03
1683 2157 3.122780 TCAAAACACTATCACACGATGCG 59.877 43.478 0.00 0.00 32.73 4.73
1689 2163 8.128582 TCTGATTTTGTCAAAACACTATCACAC 58.871 33.333 12.86 0.00 36.14 3.82
1690 2164 8.219546 TCTGATTTTGTCAAAACACTATCACA 57.780 30.769 12.86 0.00 36.14 3.58
1694 2168 8.084073 CACCATCTGATTTTGTCAAAACACTAT 58.916 33.333 12.86 3.09 36.14 2.12
1696 2170 6.096705 TCACCATCTGATTTTGTCAAAACACT 59.903 34.615 12.86 0.00 36.14 3.55
1698 2172 6.462552 TCACCATCTGATTTTGTCAAAACA 57.537 33.333 12.86 11.56 36.14 2.83
1699 2173 6.756074 TGTTCACCATCTGATTTTGTCAAAAC 59.244 34.615 12.86 7.97 36.14 2.43
1707 2182 4.828939 TGCTCTTGTTCACCATCTGATTTT 59.171 37.500 0.00 0.00 0.00 1.82
1708 2183 4.217118 GTGCTCTTGTTCACCATCTGATTT 59.783 41.667 0.00 0.00 0.00 2.17
1719 2194 4.826733 ACATACAAATGGTGCTCTTGTTCA 59.173 37.500 0.00 0.00 37.43 3.18
1720 2195 5.048782 TCACATACAAATGGTGCTCTTGTTC 60.049 40.000 0.00 0.00 37.43 3.18
1723 2198 5.375417 TTCACATACAAATGGTGCTCTTG 57.625 39.130 0.00 0.00 37.43 3.02
1724 2199 5.622914 GCATTCACATACAAATGGTGCTCTT 60.623 40.000 0.00 0.00 37.43 2.85
1737 2212 5.163723 ACACATAACTGCAGCATTCACATAC 60.164 40.000 15.27 0.00 0.00 2.39
1744 2220 3.678289 TCAGACACATAACTGCAGCATT 58.322 40.909 15.27 3.96 34.57 3.56
1745 2221 3.339253 TCAGACACATAACTGCAGCAT 57.661 42.857 15.27 5.65 34.57 3.79
1751 2227 3.127548 GGGCACATTCAGACACATAACTG 59.872 47.826 0.00 0.00 35.72 3.16
1759 2237 0.327924 ATTCGGGGCACATTCAGACA 59.672 50.000 0.00 0.00 0.00 3.41
1764 2242 2.715624 GCGATTCGGGGCACATTC 59.284 61.111 8.34 0.00 0.00 2.67
1775 2253 1.565156 TTATCCATGCGCCGCGATTC 61.565 55.000 18.91 0.00 0.00 2.52
1776 2254 1.596752 TTATCCATGCGCCGCGATT 60.597 52.632 18.91 0.00 0.00 3.34
1782 2260 2.327940 GCACGTTATCCATGCGCC 59.672 61.111 4.18 0.00 0.00 6.53
1783 2261 1.010797 CTGCACGTTATCCATGCGC 60.011 57.895 0.00 0.00 42.44 6.09
1784 2262 0.726827 AACTGCACGTTATCCATGCG 59.273 50.000 0.00 0.00 42.44 4.73
1787 2265 2.365582 GGGAAACTGCACGTTATCCAT 58.634 47.619 19.18 3.21 35.91 3.41
1791 2269 2.579410 AAGGGGAAACTGCACGTTAT 57.421 45.000 2.60 0.00 33.90 1.89
1809 2287 6.710278 TGTCATGATGATAGACCAGTCAAAA 58.290 36.000 0.00 0.00 0.00 2.44
1830 2308 3.435327 TCAAAGACAACGCCATACATGTC 59.565 43.478 0.00 0.00 41.88 3.06
1847 2325 1.581934 TTCCGTCAGCACACTCAAAG 58.418 50.000 0.00 0.00 0.00 2.77
1852 2330 5.276461 TCATTATATTCCGTCAGCACACT 57.724 39.130 0.00 0.00 0.00 3.55
1858 2336 6.288294 TGAAACCCTCATTATATTCCGTCAG 58.712 40.000 0.00 0.00 0.00 3.51
1860 2338 6.522054 TCTGAAACCCTCATTATATTCCGTC 58.478 40.000 0.00 0.00 32.14 4.79
1861 2339 6.494666 TCTGAAACCCTCATTATATTCCGT 57.505 37.500 0.00 0.00 32.14 4.69
1862 2340 5.409826 GCTCTGAAACCCTCATTATATTCCG 59.590 44.000 0.00 0.00 32.14 4.30
1863 2341 6.299141 TGCTCTGAAACCCTCATTATATTCC 58.701 40.000 0.00 0.00 32.14 3.01
1870 2349 3.265221 TCATCTGCTCTGAAACCCTCATT 59.735 43.478 0.00 0.00 32.14 2.57
1879 2358 5.608449 CAGAACCATATCATCTGCTCTGAA 58.392 41.667 0.00 0.00 34.72 3.02
1880 2359 5.211174 CAGAACCATATCATCTGCTCTGA 57.789 43.478 0.00 0.00 34.72 3.27
1887 2366 4.449131 CACACAGCAGAACCATATCATCT 58.551 43.478 0.00 0.00 0.00 2.90
1892 2371 4.568072 TTACCACACAGCAGAACCATAT 57.432 40.909 0.00 0.00 0.00 1.78
1928 2409 5.132043 ACAGTGCTCCTACTACCTAATCT 57.868 43.478 0.00 0.00 0.00 2.40
1930 2411 5.958987 AGAAACAGTGCTCCTACTACCTAAT 59.041 40.000 0.00 0.00 0.00 1.73
1933 2414 3.764972 GAGAAACAGTGCTCCTACTACCT 59.235 47.826 0.00 0.00 0.00 3.08
1939 2420 3.803715 GCAGTTGAGAAACAGTGCTCCTA 60.804 47.826 0.00 0.00 37.34 2.94
1940 2421 2.843701 CAGTTGAGAAACAGTGCTCCT 58.156 47.619 0.00 0.00 0.00 3.69
1951 2432 5.871524 GTGAGATAACATCAGCAGTTGAGAA 59.128 40.000 0.00 0.00 39.68 2.87
1955 2441 5.173664 TCAGTGAGATAACATCAGCAGTTG 58.826 41.667 0.00 0.00 0.00 3.16
1964 2450 4.520179 TGCAGCAATCAGTGAGATAACAT 58.480 39.130 0.00 0.00 35.39 2.71
1973 2459 4.142556 TGTCACATAATGCAGCAATCAGTG 60.143 41.667 0.00 7.11 0.00 3.66
1978 2464 3.760151 ACTGTGTCACATAATGCAGCAAT 59.240 39.130 6.03 0.00 0.00 3.56
1982 2468 4.023792 ACAACACTGTGTCACATAATGCAG 60.024 41.667 14.68 4.86 33.30 4.41
1998 2484 7.936847 TCAAATTCTCAGGTTATACACAACACT 59.063 33.333 0.00 0.00 0.00 3.55
2082 2569 8.621286 CCTCTATGCCAAAATATAAGACGTTTT 58.379 33.333 0.00 0.00 0.00 2.43
2083 2570 7.773690 ACCTCTATGCCAAAATATAAGACGTTT 59.226 33.333 0.00 0.00 0.00 3.60
2084 2571 7.280356 ACCTCTATGCCAAAATATAAGACGTT 58.720 34.615 0.00 0.00 0.00 3.99
2085 2572 6.827727 ACCTCTATGCCAAAATATAAGACGT 58.172 36.000 0.00 0.00 0.00 4.34
2086 2573 8.088981 ACTACCTCTATGCCAAAATATAAGACG 58.911 37.037 0.00 0.00 0.00 4.18
2089 2576 9.372369 GCTACTACCTCTATGCCAAAATATAAG 57.628 37.037 0.00 0.00 0.00 1.73
2090 2577 8.876181 TGCTACTACCTCTATGCCAAAATATAA 58.124 33.333 0.00 0.00 0.00 0.98
2091 2578 8.430573 TGCTACTACCTCTATGCCAAAATATA 57.569 34.615 0.00 0.00 0.00 0.86
2092 2579 7.316393 TGCTACTACCTCTATGCCAAAATAT 57.684 36.000 0.00 0.00 0.00 1.28
2093 2580 6.740944 TGCTACTACCTCTATGCCAAAATA 57.259 37.500 0.00 0.00 0.00 1.40
2094 2581 5.630415 TGCTACTACCTCTATGCCAAAAT 57.370 39.130 0.00 0.00 0.00 1.82
2095 2582 5.429681 TTGCTACTACCTCTATGCCAAAA 57.570 39.130 0.00 0.00 0.00 2.44
2096 2583 5.429681 TTTGCTACTACCTCTATGCCAAA 57.570 39.130 0.00 0.00 0.00 3.28
2097 2584 5.630415 ATTTGCTACTACCTCTATGCCAA 57.370 39.130 0.00 0.00 0.00 4.52
2098 2585 5.104527 ACAATTTGCTACTACCTCTATGCCA 60.105 40.000 0.00 0.00 0.00 4.92
2099 2586 5.368989 ACAATTTGCTACTACCTCTATGCC 58.631 41.667 0.00 0.00 0.00 4.40
2100 2587 6.927294 AACAATTTGCTACTACCTCTATGC 57.073 37.500 0.00 0.00 0.00 3.14
2101 2588 9.046296 CCTTAACAATTTGCTACTACCTCTATG 57.954 37.037 0.00 0.00 0.00 2.23
2102 2589 8.989131 TCCTTAACAATTTGCTACTACCTCTAT 58.011 33.333 0.00 0.00 0.00 1.98
2103 2590 8.255905 GTCCTTAACAATTTGCTACTACCTCTA 58.744 37.037 0.00 0.00 0.00 2.43
2104 2591 7.038231 AGTCCTTAACAATTTGCTACTACCTCT 60.038 37.037 0.00 0.00 0.00 3.69
2105 2592 7.064728 CAGTCCTTAACAATTTGCTACTACCTC 59.935 40.741 0.00 0.00 0.00 3.85
2106 2593 6.879458 CAGTCCTTAACAATTTGCTACTACCT 59.121 38.462 0.00 0.00 0.00 3.08
2107 2594 6.653740 ACAGTCCTTAACAATTTGCTACTACC 59.346 38.462 0.00 0.00 0.00 3.18
2108 2595 7.148457 GGACAGTCCTTAACAATTTGCTACTAC 60.148 40.741 12.94 0.00 32.53 2.73
2109 2596 6.877322 GGACAGTCCTTAACAATTTGCTACTA 59.123 38.462 12.94 0.00 32.53 1.82
2110 2597 5.705905 GGACAGTCCTTAACAATTTGCTACT 59.294 40.000 12.94 0.00 32.53 2.57
2111 2598 5.472137 TGGACAGTCCTTAACAATTTGCTAC 59.528 40.000 20.82 0.00 37.46 3.58
2112 2599 5.626142 TGGACAGTCCTTAACAATTTGCTA 58.374 37.500 20.82 0.00 37.46 3.49
2113 2600 4.469657 TGGACAGTCCTTAACAATTTGCT 58.530 39.130 20.82 0.00 37.46 3.91
2114 2601 4.846779 TGGACAGTCCTTAACAATTTGC 57.153 40.909 20.82 0.00 37.46 3.68
2115 2602 5.634859 GCAATGGACAGTCCTTAACAATTTG 59.365 40.000 20.82 8.59 37.46 2.32
2116 2603 5.279456 GGCAATGGACAGTCCTTAACAATTT 60.279 40.000 20.82 0.00 37.46 1.82
2117 2604 4.220602 GGCAATGGACAGTCCTTAACAATT 59.779 41.667 20.82 7.86 37.46 2.32
2118 2605 3.763897 GGCAATGGACAGTCCTTAACAAT 59.236 43.478 20.82 1.50 37.46 2.71
2124 2611 1.341383 GGATGGCAATGGACAGTCCTT 60.341 52.381 20.82 11.72 37.46 3.36
2126 2613 1.097547 CGGATGGCAATGGACAGTCC 61.098 60.000 13.35 13.35 33.72 3.85
2128 2615 0.038166 AACGGATGGCAATGGACAGT 59.962 50.000 0.00 0.00 33.72 3.55
2129 2616 0.452987 CAACGGATGGCAATGGACAG 59.547 55.000 0.00 0.00 33.72 3.51
2132 2619 1.557371 TCTACAACGGATGGCAATGGA 59.443 47.619 0.00 0.00 0.00 3.41
2133 2620 2.036958 TCTACAACGGATGGCAATGG 57.963 50.000 0.00 0.00 0.00 3.16
2138 2625 4.051922 CAACTCTATCTACAACGGATGGC 58.948 47.826 0.00 0.00 0.00 4.40
2141 2628 4.683832 GTGCAACTCTATCTACAACGGAT 58.316 43.478 0.00 0.00 0.00 4.18
2178 2669 8.928448 TGGAGCATTACTCTACAGAAAGATAAT 58.072 33.333 0.00 0.00 45.48 1.28
2234 2728 3.269381 TGAGGGCCTCAATTTGGAATACT 59.731 43.478 33.38 0.00 37.57 2.12
2240 2734 0.251742 TGGTGAGGGCCTCAATTTGG 60.252 55.000 36.54 0.00 42.46 3.28
2255 2749 3.429141 CAAGAGGCGCTGCTGGTG 61.429 66.667 7.64 0.00 0.00 4.17
2257 2751 3.123620 GACAAGAGGCGCTGCTGG 61.124 66.667 7.64 5.03 0.00 4.85
2265 2759 7.816640 TGTAATAATGAAACAAGACAAGAGGC 58.183 34.615 0.00 0.00 0.00 4.70
2299 2793 5.782893 ACATTTACTAGCTGTTGCCAAAA 57.217 34.783 0.00 0.00 40.80 2.44
2320 2817 5.880341 ACAAGCACTTGAAAACAGTAGAAC 58.120 37.500 16.95 0.00 42.93 3.01
2346 2843 2.426738 ACACACACACATTCCAACAAGG 59.573 45.455 0.00 0.00 39.47 3.61
2347 2844 3.119531 ACACACACACACATTCCAACAAG 60.120 43.478 0.00 0.00 0.00 3.16
2348 2845 2.822561 ACACACACACACATTCCAACAA 59.177 40.909 0.00 0.00 0.00 2.83
2349 2846 2.163211 CACACACACACACATTCCAACA 59.837 45.455 0.00 0.00 0.00 3.33
2350 2847 2.163412 ACACACACACACACATTCCAAC 59.837 45.455 0.00 0.00 0.00 3.77
2351 2848 2.163211 CACACACACACACACATTCCAA 59.837 45.455 0.00 0.00 0.00 3.53
2358 2855 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2367 2864 2.418280 GACATTCACACACACACACACA 59.582 45.455 0.00 0.00 0.00 3.72
2368 2865 2.677836 AGACATTCACACACACACACAC 59.322 45.455 0.00 0.00 0.00 3.82
2372 2869 4.614555 TTCAAGACATTCACACACACAC 57.385 40.909 0.00 0.00 0.00 3.82
2374 2871 5.687285 GGAATTTCAAGACATTCACACACAC 59.313 40.000 10.18 0.00 31.91 3.82
2375 2872 5.505489 CGGAATTTCAAGACATTCACACACA 60.505 40.000 10.18 0.00 31.91 3.72
2376 2873 4.911610 CGGAATTTCAAGACATTCACACAC 59.088 41.667 10.18 0.00 31.91 3.82
2377 2874 4.023279 CCGGAATTTCAAGACATTCACACA 60.023 41.667 0.00 0.00 31.91 3.72
2378 2875 4.475944 CCGGAATTTCAAGACATTCACAC 58.524 43.478 0.00 0.00 31.91 3.82
2380 2877 3.057596 TGCCGGAATTTCAAGACATTCAC 60.058 43.478 5.05 1.90 31.91 3.18
2381 2878 3.153130 TGCCGGAATTTCAAGACATTCA 58.847 40.909 5.05 0.00 31.91 2.57
2382 2879 3.848272 TGCCGGAATTTCAAGACATTC 57.152 42.857 5.05 1.30 0.00 2.67
2405 2916 1.331214 ATGCATAAGGGGAAATGGCG 58.669 50.000 0.00 0.00 0.00 5.69
2422 2933 2.589407 CGCTACACATTTCAACGCAATG 59.411 45.455 0.00 0.00 37.60 2.82
2428 2939 3.064207 TCAGGACGCTACACATTTCAAC 58.936 45.455 0.00 0.00 0.00 3.18
2444 2955 8.463930 ACACAGTTTTTATCTTCAATTCAGGA 57.536 30.769 0.00 0.00 0.00 3.86
2464 2975 5.349817 CAGAAAACCTGTCATAGCTACACAG 59.650 44.000 20.84 20.84 38.10 3.66
2638 3153 3.359950 CCTTTTGCAAGAGGATTAGGCT 58.640 45.455 27.86 0.00 34.91 4.58
2645 3160 2.091885 ACTGTTCCCTTTTGCAAGAGGA 60.092 45.455 32.09 20.68 34.91 3.71
2666 3181 2.559668 CAGAGAAGCCATTGAGCCAAAA 59.440 45.455 0.00 0.00 0.00 2.44
2720 3235 2.225727 GGGGTCAGTTTCTTTAACAGCG 59.774 50.000 0.00 0.00 39.30 5.18
2785 3300 2.774234 TCATCATCTTTGTCCTCCTCCC 59.226 50.000 0.00 0.00 0.00 4.30
2906 3421 3.055167 TCATGTCGGGTGAAGTCATGAAT 60.055 43.478 0.00 0.00 39.71 2.57
2948 3463 1.153647 GATCACGGTGGATGCGACA 60.154 57.895 8.50 0.00 0.00 4.35
3026 3541 3.314331 CCCTGTCGCCACCTCAGT 61.314 66.667 0.00 0.00 0.00 3.41
3062 3577 1.202580 GCCAGCCACGACATTATCTCT 60.203 52.381 0.00 0.00 0.00 3.10
3125 3640 3.998672 GGTCGGTTGGTCTCCGCA 61.999 66.667 0.00 0.00 46.49 5.69
3140 3655 0.396811 CCCTGAAGGTGACGAAAGGT 59.603 55.000 0.00 0.00 0.00 3.50
3161 3676 7.161699 GTCGACGAAGTAGAAGCTCCCATTA 62.162 48.000 0.00 0.00 45.07 1.90
3162 3677 6.455918 GTCGACGAAGTAGAAGCTCCCATT 62.456 50.000 0.00 0.00 45.07 3.16
3164 3679 3.767955 GTCGACGAAGTAGAAGCTCCCA 61.768 54.545 0.00 0.00 45.07 4.37
3198 3713 4.179361 CAGCAAGGCCTTGTTGGA 57.821 55.556 40.10 0.00 44.54 3.53
3307 3822 3.618690 AAAAAGGACGATAGCTCAGCT 57.381 42.857 3.60 3.60 43.41 4.24
3357 3872 7.221450 ACAGCAATACCGTAATACCACATATT 58.779 34.615 0.00 0.00 37.29 1.28
3358 3873 6.765403 ACAGCAATACCGTAATACCACATAT 58.235 36.000 0.00 0.00 0.00 1.78
3359 3874 6.164417 ACAGCAATACCGTAATACCACATA 57.836 37.500 0.00 0.00 0.00 2.29
3360 3875 5.031066 ACAGCAATACCGTAATACCACAT 57.969 39.130 0.00 0.00 0.00 3.21
3362 3877 7.486802 AATAACAGCAATACCGTAATACCAC 57.513 36.000 0.00 0.00 0.00 4.16
3363 3878 7.227116 GGAAATAACAGCAATACCGTAATACCA 59.773 37.037 0.00 0.00 0.00 3.25
3364 3879 7.227116 TGGAAATAACAGCAATACCGTAATACC 59.773 37.037 0.00 0.00 0.00 2.73
3365 3880 8.066000 GTGGAAATAACAGCAATACCGTAATAC 58.934 37.037 0.00 0.00 0.00 1.89
3366 3881 7.988599 AGTGGAAATAACAGCAATACCGTAATA 59.011 33.333 0.00 0.00 0.00 0.98
3367 3882 6.826741 AGTGGAAATAACAGCAATACCGTAAT 59.173 34.615 0.00 0.00 0.00 1.89
3368 3883 6.174760 AGTGGAAATAACAGCAATACCGTAA 58.825 36.000 0.00 0.00 0.00 3.18
3371 3886 4.035208 GGAGTGGAAATAACAGCAATACCG 59.965 45.833 0.00 0.00 0.00 4.02
3377 3892 4.188462 CGTATGGAGTGGAAATAACAGCA 58.812 43.478 0.00 0.00 0.00 4.41
3393 3908 3.871594 GTGATTCTCAAACCTCCGTATGG 59.128 47.826 0.00 0.00 0.00 2.74
3414 3930 6.713450 ACGAGTTAAAAATATTCCACACCAGT 59.287 34.615 0.00 0.00 0.00 4.00
3419 3938 6.128499 CGTCCACGAGTTAAAAATATTCCACA 60.128 38.462 0.00 0.00 43.02 4.17
3469 3988 0.036732 TGTCAATCACACAGAGGGGC 59.963 55.000 0.00 0.00 0.00 5.80
3470 3989 1.349026 ACTGTCAATCACACAGAGGGG 59.651 52.381 6.83 0.00 43.54 4.79
3486 4007 5.726793 AGATACCACTGGGATTCTAAACTGT 59.273 40.000 0.00 0.00 38.05 3.55
3496 4017 2.680805 CGCAAACAGATACCACTGGGAT 60.681 50.000 0.00 0.00 41.59 3.85
3499 4020 2.093306 TCGCAAACAGATACCACTGG 57.907 50.000 0.00 0.00 41.59 4.00
3511 4032 7.078228 ACACATCTTTAAGAGAAATCGCAAAC 58.922 34.615 0.03 0.00 38.06 2.93
3547 4068 6.156256 AGCCACAACAGATACCAAATAGTAGA 59.844 38.462 0.00 0.00 0.00 2.59
3549 4070 6.308015 AGCCACAACAGATACCAAATAGTA 57.692 37.500 0.00 0.00 0.00 1.82
3553 4074 5.435686 TCTAGCCACAACAGATACCAAAT 57.564 39.130 0.00 0.00 0.00 2.32
3554 4075 4.901197 TCTAGCCACAACAGATACCAAA 57.099 40.909 0.00 0.00 0.00 3.28
3555 4076 5.661312 AGTATCTAGCCACAACAGATACCAA 59.339 40.000 14.31 0.00 46.49 3.67
3564 4085 4.920340 CGATCATGAGTATCTAGCCACAAC 59.080 45.833 0.09 0.00 34.92 3.32
3570 4091 5.106118 TGCTAACCGATCATGAGTATCTAGC 60.106 44.000 16.32 16.32 34.92 3.42
3574 4095 5.714047 TCATGCTAACCGATCATGAGTATC 58.286 41.667 0.09 0.00 40.91 2.24
3656 4177 3.031013 TGAAGGGCTCGATCTTACATGA 58.969 45.455 0.00 0.00 0.00 3.07
3657 4178 3.459232 TGAAGGGCTCGATCTTACATG 57.541 47.619 0.00 0.00 0.00 3.21
3658 4179 3.900601 AGATGAAGGGCTCGATCTTACAT 59.099 43.478 0.00 0.00 0.00 2.29
3659 4180 3.300388 AGATGAAGGGCTCGATCTTACA 58.700 45.455 0.00 0.00 0.00 2.41
3660 4181 3.572255 AGAGATGAAGGGCTCGATCTTAC 59.428 47.826 0.00 0.00 36.29 2.34
3661 4182 3.838565 AGAGATGAAGGGCTCGATCTTA 58.161 45.455 0.00 0.00 36.29 2.10
3662 4183 2.676748 AGAGATGAAGGGCTCGATCTT 58.323 47.619 0.00 0.00 36.29 2.40
3663 4184 2.380064 AGAGATGAAGGGCTCGATCT 57.620 50.000 0.00 0.00 36.29 2.75
3664 4185 2.887783 TGTAGAGATGAAGGGCTCGATC 59.112 50.000 0.00 0.00 36.29 3.69
3665 4186 2.890311 CTGTAGAGATGAAGGGCTCGAT 59.110 50.000 0.00 0.00 36.29 3.59
3666 4187 2.092375 TCTGTAGAGATGAAGGGCTCGA 60.092 50.000 0.00 0.00 36.29 4.04
3667 4188 2.302260 TCTGTAGAGATGAAGGGCTCG 58.698 52.381 0.00 0.00 36.29 5.03
3668 4189 4.343526 TGAATCTGTAGAGATGAAGGGCTC 59.656 45.833 2.64 0.00 39.04 4.70
3669 4190 4.293494 TGAATCTGTAGAGATGAAGGGCT 58.707 43.478 2.64 0.00 39.04 5.19
3670 4191 4.679373 TGAATCTGTAGAGATGAAGGGC 57.321 45.455 2.64 0.00 39.04 5.19
3671 4192 4.996122 GCATGAATCTGTAGAGATGAAGGG 59.004 45.833 2.64 0.00 39.04 3.95
3672 4193 5.608449 TGCATGAATCTGTAGAGATGAAGG 58.392 41.667 2.64 0.00 39.04 3.46
3673 4194 6.147985 CCATGCATGAATCTGTAGAGATGAAG 59.852 42.308 28.31 0.38 39.04 3.02
3674 4195 5.995897 CCATGCATGAATCTGTAGAGATGAA 59.004 40.000 28.31 0.00 39.04 2.57
3675 4196 5.071384 ACCATGCATGAATCTGTAGAGATGA 59.929 40.000 28.31 0.00 39.04 2.92
3676 4197 5.179555 CACCATGCATGAATCTGTAGAGATG 59.820 44.000 28.31 8.16 39.04 2.90
3677 4198 5.163227 ACACCATGCATGAATCTGTAGAGAT 60.163 40.000 28.31 0.00 41.00 2.75
3678 4199 4.162888 ACACCATGCATGAATCTGTAGAGA 59.837 41.667 28.31 0.00 0.00 3.10
3694 4215 1.462283 CAAGACGAAGCAGACACCATG 59.538 52.381 0.00 0.00 0.00 3.66
3722 4246 3.665173 GCTCTGGATAGCTTTGTTTCG 57.335 47.619 0.00 0.00 39.50 3.46
3761 4285 7.148000 CCCAGGATGACTATTCCTTTTCTTTTC 60.148 40.741 0.00 0.00 41.78 2.29
3762 4286 6.665248 CCCAGGATGACTATTCCTTTTCTTTT 59.335 38.462 0.00 0.00 41.78 2.27
3789 4315 4.952071 AGCACTCATCACATAGCATACT 57.048 40.909 0.00 0.00 0.00 2.12
3796 4322 7.069208 AGACTATTCAGAAGCACTCATCACATA 59.931 37.037 0.00 0.00 0.00 2.29
3797 4323 5.987098 ACTATTCAGAAGCACTCATCACAT 58.013 37.500 0.00 0.00 0.00 3.21
3802 4328 5.163426 CCAGAGACTATTCAGAAGCACTCAT 60.163 44.000 0.00 0.00 0.00 2.90
3806 4332 4.727507 TCCAGAGACTATTCAGAAGCAC 57.272 45.455 0.00 0.00 0.00 4.40
3810 4336 5.668471 CAGCAATCCAGAGACTATTCAGAA 58.332 41.667 0.00 0.00 0.00 3.02
3821 4348 0.877071 AAACGTGCAGCAATCCAGAG 59.123 50.000 0.00 0.00 0.00 3.35
3824 4351 2.621055 AGTTTAAACGTGCAGCAATCCA 59.379 40.909 12.54 0.00 0.00 3.41
3829 4356 1.021202 AGCAGTTTAAACGTGCAGCA 58.979 45.000 28.47 0.00 36.32 4.41
3836 4363 5.569413 ACTCAGTTTGAAGCAGTTTAAACG 58.431 37.500 12.54 8.87 43.52 3.60
3841 4368 2.614057 CGGACTCAGTTTGAAGCAGTTT 59.386 45.455 0.00 0.00 0.00 2.66
3842 4369 2.158957 TCGGACTCAGTTTGAAGCAGTT 60.159 45.455 0.00 0.00 0.00 3.16
3843 4370 1.412710 TCGGACTCAGTTTGAAGCAGT 59.587 47.619 0.00 0.00 0.00 4.40
3854 4381 3.726631 GAGAGCGCGTCGGACTCAG 62.727 68.421 8.43 0.00 32.71 3.35
3861 4395 4.462417 ACGAAGGAGAGCGCGTCG 62.462 66.667 8.43 9.91 30.15 5.12
3863 4397 3.362797 TGACGAAGGAGAGCGCGT 61.363 61.111 8.43 0.00 39.99 6.01
3864 4398 2.876645 GTGACGAAGGAGAGCGCG 60.877 66.667 0.00 0.00 0.00 6.86
3870 4404 1.546961 AGTACCAGGTGACGAAGGAG 58.453 55.000 0.76 0.00 0.00 3.69
3877 4411 0.036294 GGGCTGAAGTACCAGGTGAC 60.036 60.000 0.76 0.00 34.82 3.67
3878 4412 1.198759 GGGGCTGAAGTACCAGGTGA 61.199 60.000 0.76 0.00 34.82 4.02
3882 4419 0.693049 ACAAGGGGCTGAAGTACCAG 59.307 55.000 0.00 0.00 37.23 4.00
3893 4430 1.652563 GACAACGACAACAAGGGGC 59.347 57.895 0.00 0.00 0.00 5.80
3912 4449 1.143305 CGACGATCTCCATTGATGCC 58.857 55.000 0.00 0.00 0.00 4.40
3915 4452 1.000283 GGCTCGACGATCTCCATTGAT 60.000 52.381 0.00 0.00 0.00 2.57
3920 4457 0.679960 TGAAGGCTCGACGATCTCCA 60.680 55.000 0.00 0.00 0.00 3.86
3921 4458 0.671251 ATGAAGGCTCGACGATCTCC 59.329 55.000 0.00 0.19 0.00 3.71
3942 4479 2.352805 CTGGTCAGTGGGGAAGCC 59.647 66.667 0.00 0.00 0.00 4.35
3972 4509 4.499758 GTCGAGAAGAATGTAATCACGGTC 59.500 45.833 0.00 0.00 0.00 4.79
4085 4622 7.742089 GTCTCACTCTTTGAAATAACGAACATG 59.258 37.037 0.00 0.00 32.21 3.21
4087 4624 6.074516 CGTCTCACTCTTTGAAATAACGAACA 60.075 38.462 0.00 0.00 32.21 3.18
4093 4630 5.122239 CCATGCGTCTCACTCTTTGAAATAA 59.878 40.000 0.00 0.00 32.21 1.40
4101 4638 1.893137 TGTACCATGCGTCTCACTCTT 59.107 47.619 0.00 0.00 0.00 2.85
4105 4642 3.000041 TGAATTGTACCATGCGTCTCAC 59.000 45.455 0.00 0.00 0.00 3.51
4110 4647 2.083774 CCAGTGAATTGTACCATGCGT 58.916 47.619 0.00 0.00 0.00 5.24
4121 4658 7.893124 ATATTGCATCTTCTTCCAGTGAATT 57.107 32.000 0.00 0.00 0.00 2.17
4151 4688 3.751479 TGTCGGAATCATATGACCCAG 57.249 47.619 20.01 14.42 0.00 4.45
4160 4697 7.403312 TTGGATGTTATTTTGTCGGAATCAT 57.597 32.000 0.00 0.00 0.00 2.45
4188 4725 6.687647 GCATCTCTCTAGTTTTAAGGGATGCT 60.688 42.308 25.32 0.00 45.40 3.79
4191 4728 5.072464 GGGCATCTCTCTAGTTTTAAGGGAT 59.928 44.000 0.00 0.00 0.00 3.85
4260 4797 1.483827 CACCAGCAGCTGAAGGAGATA 59.516 52.381 24.90 0.00 32.44 1.98
4275 4812 3.793144 GAGCCGCTTTCGCACCAG 61.793 66.667 0.00 0.00 35.30 4.00
4293 4830 3.786635 ACTGAGCGAGGTTGTGATATTC 58.213 45.455 0.00 0.00 0.00 1.75
4304 4841 0.108898 CCTCAACAGACTGAGCGAGG 60.109 60.000 18.52 18.52 41.36 4.63
4325 4862 2.095372 CGGAAATACTTCAAGCCGGAAC 59.905 50.000 5.05 0.00 35.42 3.62
4329 4866 2.095372 GGTTCGGAAATACTTCAAGCCG 59.905 50.000 0.00 0.00 40.06 5.52
4352 4889 4.260990 CGTGTCATATGTGTTTGTTGGTGT 60.261 41.667 1.90 0.00 0.00 4.16
4353 4890 4.218265 CGTGTCATATGTGTTTGTTGGTG 58.782 43.478 1.90 0.00 0.00 4.17
4354 4891 3.252215 CCGTGTCATATGTGTTTGTTGGT 59.748 43.478 1.90 0.00 0.00 3.67
4355 4892 3.365868 CCCGTGTCATATGTGTTTGTTGG 60.366 47.826 1.90 0.00 0.00 3.77
4356 4893 3.500299 TCCCGTGTCATATGTGTTTGTTG 59.500 43.478 1.90 0.00 0.00 3.33
4357 4894 3.745799 TCCCGTGTCATATGTGTTTGTT 58.254 40.909 1.90 0.00 0.00 2.83
4365 4902 5.409520 CCATTTACTGATCCCGTGTCATATG 59.590 44.000 0.00 0.00 0.00 1.78
4367 4904 4.742440 GCCATTTACTGATCCCGTGTCATA 60.742 45.833 0.00 0.00 0.00 2.15
4375 4912 8.691797 TGTAAAATTAAGCCATTTACTGATCCC 58.308 33.333 8.54 0.00 39.25 3.85
4383 4920 8.776061 ATAGCCCTGTAAAATTAAGCCATTTA 57.224 30.769 0.00 0.00 0.00 1.40
4393 4930 9.869757 GTGAAACATAAATAGCCCTGTAAAATT 57.130 29.630 0.00 0.00 36.32 1.82
4394 4931 9.030452 TGTGAAACATAAATAGCCCTGTAAAAT 57.970 29.630 0.00 0.00 45.67 1.82
4436 4977 3.058016 CGATGAAAGTTGCACATGACCTT 60.058 43.478 0.00 0.00 0.00 3.50
4439 4980 3.228749 CACGATGAAAGTTGCACATGAC 58.771 45.455 0.00 0.00 0.00 3.06
4448 4989 3.499918 CAGAAGGAAGCACGATGAAAGTT 59.500 43.478 0.00 0.00 0.00 2.66
4449 4990 3.070018 CAGAAGGAAGCACGATGAAAGT 58.930 45.455 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.