AutoCloner

Multiple sequence alignment - TraesCS5D01G554800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G554800	chr5D	100.000	1759	0	0	719	2477	558726324	558728082	0.000000e+00	3249.0
1	TraesCS5D01G554800	chr5D	100.000	456	0	0	1	456	558725606	558726061	0.000000e+00	843.0
2	TraesCS5D01G554800	chr5D	80.049	406	69	10	8	407	400405753	400405354	8.670000e-75	291.0
3	TraesCS5D01G554800	chr5D	80.332	361	69	2	2118	2477	543588626	543588985	3.140000e-69	272.0
4	TraesCS5D01G554800	chr2D	84.472	966	129	13	1527	2477	486580219	486581178	0.000000e+00	933.0
5	TraesCS5D01G554800	chr2D	88.398	793	67	11	719	1492	448225219	448224433	0.000000e+00	931.0
6	TraesCS5D01G554800	chr2D	94.298	456	18	2	1	456	383168438	383167991	0.000000e+00	691.0
7	TraesCS5D01G554800	chr2D	93.363	452	30	0	997	1448	383167747	383167296	0.000000e+00	669.0
8	TraesCS5D01G554800	chr2D	90.380	395	31	1	62	456	448225635	448225248	1.700000e-141	512.0
9	TraesCS5D01G554800	chr2D	79.784	648	120	9	862	1504	360477116	360476475	6.240000e-126	460.0
10	TraesCS5D01G554800	chr2D	92.086	139	11	0	719	857	383167962	383167824	1.940000e-46	196.0
11	TraesCS5D01G554800	chr1B	93.509	570	36	1	887	1456	24772515	24771947	0.000000e+00	846.0
12	TraesCS5D01G554800	chr3D	82.008	956	129	19	1528	2477	96211298	96210380	0.000000e+00	773.0
13	TraesCS5D01G554800	chr3D	80.987	952	155	18	1533	2477	23608118	23609050	0.000000e+00	732.0
14	TraesCS5D01G554800	chr3D	84.239	552	72	8	1528	2075	96371945	96371405	7.850000e-145	523.0
15	TraesCS5D01G554800	chr3D	82.663	398	62	6	2077	2472	93202882	93203274	1.820000e-91	346.0
16	TraesCS5D01G554800	chr7B	79.389	655	122	10	856	1504	367492256	367492903	1.350000e-122	449.0
17	TraesCS5D01G554800	chr7B	80.622	418	77	4	1	416	697524340	697523925	1.110000e-83	320.0
18	TraesCS5D01G554800	chr7B	80.519	385	71	4	31	413	56357824	56357442	2.410000e-75	292.0
19	TraesCS5D01G554800	chr7B	79.657	408	81	2	1	407	713391961	713392367	2.410000e-75	292.0
20	TraesCS5D01G554800	chr5B	79.084	655	124	10	856	1504	704273555	704272908	2.920000e-119	438.0
21	TraesCS5D01G554800	chr5B	84.270	89	12	2	777	865	561686141	561686227	4.390000e-13	86.1
22	TraesCS5D01G554800	chr2B	79.052	654	126	8	856	1504	141843304	141843951	2.920000e-119	438.0
23	TraesCS5D01G554800	chr2B	78.995	657	126	9	856	1506	409351565	409352215	2.920000e-119	438.0
24	TraesCS5D01G554800	chr2B	79.268	410	82	3	1	408	768545737	768546145	1.450000e-72	283.0
25	TraesCS5D01G554800	chr2B	80.508	354	63	5	2118	2468	686792131	686792481	1.460000e-67	267.0
26	TraesCS5D01G554800	chr2B	79.003	381	71	9	2075	2450	478160193	478159817	4.090000e-63	252.0
27	TraesCS5D01G554800	chr6B	78.746	654	128	8	856	1504	559541626	559542273	6.330000e-116	427.0
28	TraesCS5D01G554800	chr6D	82.100	419	73	2	1	418	102221106	102220689	8.420000e-95	357.0
29	TraesCS5D01G554800	chr3A	84.242	330	49	3	2089	2417	546678767	546678440	3.980000e-83	318.0
30	TraesCS5D01G554800	chr1A	80.630	413	76	4	3	413	12127604	12127194	1.430000e-82	316.0
31	TraesCS5D01G554800	chr1A	79.603	353	69	2	2123	2474	252279295	252279645	1.470000e-62	250.0
32	TraesCS5D01G554800	chr2A	76.658	407	88	7	2075	2477	28690603	28690200	4.150000e-53	219.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G554800	chr5D	558725606	558728082	2476	False	2046.000000	3249	100.000	1	2477	2	chr5D.!!$F2	2476
1	TraesCS5D01G554800	chr2D	486580219	486581178	959	False	933.000000	933	84.472	1527	2477	1	chr2D.!!$F1	950
2	TraesCS5D01G554800	chr2D	448224433	448225635	1202	True	721.500000	931	89.389	62	1492	2	chr2D.!!$R3	1430
3	TraesCS5D01G554800	chr2D	383167296	383168438	1142	True	518.666667	691	93.249	1	1448	3	chr2D.!!$R2	1447
4	TraesCS5D01G554800	chr2D	360476475	360477116	641	True	460.000000	460	79.784	862	1504	1	chr2D.!!$R1	642
5	TraesCS5D01G554800	chr1B	24771947	24772515	568	True	846.000000	846	93.509	887	1456	1	chr1B.!!$R1	569
6	TraesCS5D01G554800	chr3D	96210380	96211298	918	True	773.000000	773	82.008	1528	2477	1	chr3D.!!$R1	949
7	TraesCS5D01G554800	chr3D	23608118	23609050	932	False	732.000000	732	80.987	1533	2477	1	chr3D.!!$F1	944
8	TraesCS5D01G554800	chr3D	96371405	96371945	540	True	523.000000	523	84.239	1528	2075	1	chr3D.!!$R2	547
9	TraesCS5D01G554800	chr7B	367492256	367492903	647	False	449.000000	449	79.389	856	1504	1	chr7B.!!$F1	648
10	TraesCS5D01G554800	chr5B	704272908	704273555	647	True	438.000000	438	79.084	856	1504	1	chr5B.!!$R1	648
11	TraesCS5D01G554800	chr2B	141843304	141843951	647	False	438.000000	438	79.052	856	1504	1	chr2B.!!$F1	648
12	TraesCS5D01G554800	chr2B	409351565	409352215	650	False	438.000000	438	78.995	856	1506	1	chr2B.!!$F2	650
13	TraesCS5D01G554800	chr6B	559541626	559542273	647	False	427.000000	427	78.746	856	1504	1	chr6B.!!$F1	648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
107	108	0.108041	GGCCAATTGATGCCCAACTG	60.108	55.0	13.19	0.0	41.97	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1979	2017	0.036388	ACAATCACCAGTACAGCCCG	60.036	55.0	0.0	0.0	0.0	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	52	4.981389	GATCTTATTGATCCAGTCACGC	57.019	45.455	0.00	0.00	44.34	5.34
75	76	3.157087	GTTTGGGATGATGACTTGGTGT	58.843	45.455	0.00	0.00	0.00	4.16
106	107	2.289840	GGCCAATTGATGCCCAACT	58.710	52.632	13.19	0.00	41.97	3.16
107	108	0.108041	GGCCAATTGATGCCCAACTG	60.108	55.000	13.19	0.00	41.97	3.16
207	208	0.373716	GCGATCAGTTTACTTGGCGG	59.626	55.000	0.00	0.00	0.00	6.13
272	273	6.785076	TGGTATGGGAAGAACTAATGTCAAA	58.215	36.000	0.00	0.00	0.00	2.69
307	308	6.592607	TGTAAGATTTGGAAGTTATCGTGTCC	59.407	38.462	0.00	0.00	0.00	4.02
377	378	1.937223	TGTCGTGTTACACTTGCCAAG	59.063	47.619	13.86	2.11	31.34	3.61
401	402	5.529289	AGACACATGAAAGTCTCCCCTATA	58.471	41.667	0.00	0.00	40.96	1.31
418	419	4.223923	CCCTATATGCCCTTCCTGTTCTAG	59.776	50.000	0.00	0.00	0.00	2.43
766	768	1.852942	CACGGCGTGTGCTATAGATT	58.147	50.000	30.56	0.00	42.70	2.40
774	776	1.484653	TGTGCTATAGATTGTGCGGGT	59.515	47.619	3.21	0.00	0.00	5.28
779	781	0.469917	ATAGATTGTGCGGGTGAGGG	59.530	55.000	0.00	0.00	0.00	4.30
811	813	6.156949	TGAATTCTTACTCCTTATGCCAGACT	59.843	38.462	7.05	0.00	0.00	3.24
847	849	3.112709	GCCTCCAGAACGCACGTC	61.113	66.667	0.00	0.00	0.00	4.34
885	912	1.069227	GTTTGCTGGTTCATGACGGAC	60.069	52.381	0.00	0.00	0.00	4.79
934	961	1.078988	GTGTCCGGGGCAATAACGA	60.079	57.895	1.18	0.00	0.00	3.85
1037	1064	5.969423	ACTAAATGTGGATGCATCTTTTGG	58.031	37.500	25.28	20.47	0.00	3.28
1042	1069	3.444742	TGTGGATGCATCTTTTGGTCATC	59.555	43.478	25.28	6.03	34.41	2.92
1047	1074	5.766670	GGATGCATCTTTTGGTCATCATCTA	59.233	40.000	25.28	0.00	36.25	1.98
1059	1086	1.071385	CATCATCTACTGAGGGGCACC	59.929	57.143	0.00	0.00	42.00	5.01
1283	1310	3.112709	GGGAGCAACGACGTCAGC	61.113	66.667	17.16	15.68	0.00	4.26
1312	1339	6.208402	TGATGATTGCTACTTTTTGGCTTGTA	59.792	34.615	0.00	0.00	0.00	2.41
1329	1356	5.639931	GGCTTGTAACTTTCCTCTCACTAAG	59.360	44.000	0.00	0.00	0.00	2.18
1370	1397	0.799534	GCGAACATGGTTGCTCATGC	60.800	55.000	16.19	0.00	46.08	4.06
1385	1412	2.812591	CTCATGCAATTGCTAGGCTAGG	59.187	50.000	29.37	11.35	42.66	3.02
1422	1449	2.978156	ATTCTTGGTTTGAGGAGCCA	57.022	45.000	0.00	0.00	36.78	4.75
1462	1489	6.255020	AGCACTTTTAATAGACGATGTAACCG	59.745	38.462	0.00	0.00	0.00	4.44
1525	1552	4.222124	GGGTATGCAATATCACCCTAGG	57.778	50.000	0.06	0.06	46.08	3.02
1541	1568	4.716977	GGGTGTCTCCTCCCCCGT	62.717	72.222	0.00	0.00	38.28	5.28
1598	1625	2.122813	CATCCCTACCGCCCCTCT	60.123	66.667	0.00	0.00	0.00	3.69
1599	1626	2.122813	ATCCCTACCGCCCCTCTG	60.123	66.667	0.00	0.00	0.00	3.35
1648	1682	0.478072	AAGTCCTCATGGTGTTGGCA	59.522	50.000	0.00	0.00	34.23	4.92
1652	1686	1.672030	CTCATGGTGTTGGCAGCGA	60.672	57.895	0.00	0.00	45.36	4.93
1653	1687	1.002257	TCATGGTGTTGGCAGCGAT	60.002	52.632	0.00	0.00	45.36	4.58
1769	1806	3.838271	GATGCCCTCGTCTCGCCA	61.838	66.667	0.00	0.00	0.00	5.69
1783	1820	1.153939	CGCCAGTGGAGTCTTCTCG	60.154	63.158	15.20	0.00	41.26	4.04
1784	1821	1.446966	GCCAGTGGAGTCTTCTCGC	60.447	63.158	15.20	0.00	41.26	5.03
1788	1825	2.360844	CAGTGGAGTCTTCTCGCTCTA	58.639	52.381	0.00	0.00	41.26	2.43
1836	1874	2.440946	CCATCTGGTGGCGGATCTA	58.559	57.895	0.00	0.00	42.12	1.98
1967	2005	2.362120	GCACATCAGCCCAAGCCT	60.362	61.111	0.00	0.00	41.25	4.58
1994	2032	2.632544	CGTCGGGCTGTACTGGTGA	61.633	63.158	1.65	0.00	0.00	4.02
2027	2065	2.280389	AGTCTGGTGCACACGCTG	60.280	61.111	20.43	5.67	39.64	5.18
2030	2068	2.901840	CTGGTGCACACGCTGGTT	60.902	61.111	20.43	0.00	39.64	3.67
2044	2082	2.481276	CGCTGGTTGACGGAGATTCATA	60.481	50.000	0.00	0.00	0.00	2.15
2045	2083	3.531538	GCTGGTTGACGGAGATTCATAA	58.468	45.455	0.00	0.00	0.00	1.90
2048	2086	5.160607	TGGTTGACGGAGATTCATAAAGT	57.839	39.130	0.00	0.00	0.00	2.66
2058	2096	5.153950	AGATTCATAAAGTAGATCCGGGC	57.846	43.478	0.00	0.00	0.00	6.13
2059	2097	4.593206	AGATTCATAAAGTAGATCCGGGCA	59.407	41.667	0.00	0.00	0.00	5.36
2084	2125	3.555966	ACCTGCTTTCAGTTGCTAAAGT	58.444	40.909	0.00	0.00	38.66	2.66
2116	2157	1.404181	GCGCTTCCTGTGTCATCTACA	60.404	52.381	0.00	0.00	35.06	2.74
2121	2162	4.569966	GCTTCCTGTGTCATCTACATCTTG	59.430	45.833	0.00	0.00	41.10	3.02
2204	2245	1.176619	TATGATCGGATGACGGCGGT	61.177	55.000	13.24	0.00	44.45	5.68
2213	2254	1.884075	ATGACGGCGGTGCTCTTGTA	61.884	55.000	13.24	0.00	0.00	2.41
2220	2261	1.736032	GCGGTGCTCTTGTATCGTTCT	60.736	52.381	0.00	0.00	34.90	3.01
2256	2297	0.478072	TCCTTGGAGGTGTGCATTGT	59.522	50.000	0.00	0.00	36.53	2.71
2259	2300	2.233271	CTTGGAGGTGTGCATTGTCTT	58.767	47.619	0.00	0.00	0.00	3.01
2260	2301	3.411446	CTTGGAGGTGTGCATTGTCTTA	58.589	45.455	0.00	0.00	0.00	2.10
2274	2315	2.915869	TGTCTTAAGGGACCAGTGGAT	58.084	47.619	18.40	0.00	35.54	3.41
2294	2335	0.320160	GGTTCTAACGGTTGAGCGGT	60.320	55.000	3.07	2.74	0.00	5.68
2295	2336	0.788391	GTTCTAACGGTTGAGCGGTG	59.212	55.000	3.07	0.00	0.00	4.94
2308	2349	0.531974	AGCGGTGTTTCATGTGACGT	60.532	50.000	0.00	0.00	0.00	4.34
2311	2368	2.158841	GCGGTGTTTCATGTGACGTATT	59.841	45.455	0.00	0.00	0.00	1.89
2317	2374	6.370593	GTGTTTCATGTGACGTATTGATGTT	58.629	36.000	0.00	0.00	0.00	2.71
2327	2384	5.184287	TGACGTATTGATGTTGTGGAGTCTA	59.816	40.000	0.00	0.00	0.00	2.59
2331	2388	2.256306	TGATGTTGTGGAGTCTAGGCA	58.744	47.619	0.00	0.00	0.00	4.75
2334	2392	0.601558	GTTGTGGAGTCTAGGCACGA	59.398	55.000	0.00	0.00	0.00	4.35
2337	2395	0.966370	GTGGAGTCTAGGCACGAGGT	60.966	60.000	0.00	0.00	0.00	3.85
2351	2409	3.363844	GAGGTGCTGCGAGGTCTCC	62.364	68.421	0.00	0.00	0.00	3.71
2363	2421	4.724602	GTCTCCGCGACAGCTGCA	62.725	66.667	15.27	0.00	42.37	4.41
2437	2495	4.681978	GCAGGCCCGACAACGTCT	62.682	66.667	0.00	0.00	37.88	4.18
2450	2508	0.528924	AACGTCTATGCGCCAGTACA	59.471	50.000	4.18	0.00	34.88	2.90
2453	2511	1.269051	CGTCTATGCGCCAGTACATGA	60.269	52.381	4.18	0.00	0.00	3.07
2456	2514	2.029020	TCTATGCGCCAGTACATGATCC	60.029	50.000	4.18	0.00	0.00	3.36
2459	2517	0.941463	GCGCCAGTACATGATCCGAG	60.941	60.000	0.00	0.00	0.00	4.63

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	1.164411	TCATCCCAAACATGCGTGAC	58.836	50.000	14.17	0.00	0.00	3.67
51	52	3.765511	ACCAAGTCATCATCCCAAACATG	59.234	43.478	0.00	0.00	0.00	3.21
75	76	3.133542	TCAATTGGCCACAATGTTTGTCA	59.866	39.130	3.88	0.00	46.25	3.58
107	108	2.643304	GGATAGGGGAATGGTTAGGACC	59.357	54.545	0.00	0.00	46.71	4.46
196	197	4.097286	GCTTATTCCATTCCGCCAAGTAAA	59.903	41.667	0.00	0.00	0.00	2.01
207	208	5.302568	TCATCCCATGTTGCTTATTCCATTC	59.697	40.000	0.00	0.00	0.00	2.67
307	308	7.623297	GCCAAATAAAGATTTTTACCTTTGCCG	60.623	37.037	8.35	1.20	32.49	5.69
727	729	6.459066	CCGTGTTAATCATCTCATACATCCT	58.541	40.000	0.00	0.00	0.00	3.24
774	776	4.601857	AGTAAGAATTCAAGAACCCCCTCA	59.398	41.667	8.44	0.00	0.00	3.86
779	781	7.201741	GCATAAGGAGTAAGAATTCAAGAACCC	60.202	40.741	8.44	1.82	0.00	4.11
783	785	6.957631	TGGCATAAGGAGTAAGAATTCAAGA	58.042	36.000	8.44	0.00	0.00	3.02
811	813	5.309806	GGAGGCCCAAAATAGATAAGTCCTA	59.690	44.000	0.00	0.00	0.00	2.94
847	849	5.036737	GCAAACGTCTATCCCAATCATTTG	58.963	41.667	0.00	0.00	0.00	2.32
934	961	4.238514	GAGTGAGCTTTCACATAGTTCGT	58.761	43.478	8.62	0.00	42.68	3.85
1037	1064	2.042464	TGCCCCTCAGTAGATGATGAC	58.958	52.381	0.00	0.00	37.28	3.06
1042	1069	1.443407	CGGTGCCCCTCAGTAGATG	59.557	63.158	0.00	0.00	0.00	2.90
1166	1193	5.678107	GCCTTTTGTGCAAGAGATAATCTGG	60.678	44.000	4.32	0.00	38.67	3.86
1279	1306	3.599343	AGTAGCAATCATCAAACGCTGA	58.401	40.909	0.00	0.00	38.81	4.26
1283	1310	5.164061	GCCAAAAAGTAGCAATCATCAAACG	60.164	40.000	0.00	0.00	0.00	3.60
1312	1339	5.786264	TCGAACTTAGTGAGAGGAAAGTT	57.214	39.130	0.00	0.00	43.06	2.66
1329	1356	5.501897	CGCTTCCCTATTACAATGTTCGAAC	60.502	44.000	21.42	21.42	0.00	3.95
1370	1397	7.490402	CAGAAAATTTTCCTAGCCTAGCAATTG	59.510	37.037	24.01	0.00	37.92	2.32
1422	1449	4.634184	AAGTGCTACAATATCGTCGACT	57.366	40.909	14.70	0.00	0.00	4.18
1519	1546	4.709690	GGAGGAGACACCCTAGGG	57.290	66.667	27.36	27.36	40.05	3.53
1525	1552	3.391382	CACGGGGGAGGAGACACC	61.391	72.222	0.00	0.00	40.88	4.16
1620	1647	1.675641	ATGAGGACTTTGCCGGTGC	60.676	57.895	1.90	0.00	38.26	5.01
1648	1682	2.841988	GAGGAGAGCCCCATCGCT	60.842	66.667	0.00	0.00	43.42	4.93
1652	1686	1.074623	CAGGAGAGGAGAGCCCCAT	60.075	63.158	0.00	0.00	34.66	4.00
1653	1687	2.366167	CAGGAGAGGAGAGCCCCA	59.634	66.667	0.00	0.00	34.66	4.96
1687	1722	1.218196	TGATGTAGAGAGGAGACCCCC	59.782	57.143	0.00	0.00	34.66	5.40
1769	1806	2.639065	CTAGAGCGAGAAGACTCCACT	58.361	52.381	0.00	0.00	39.76	4.00
1771	1808	1.340114	TGCTAGAGCGAGAAGACTCCA	60.340	52.381	0.00	0.00	45.83	3.86
1783	1820	0.747255	TTCCCAGATCGTGCTAGAGC	59.253	55.000	0.00	0.00	42.50	4.09
1784	1821	1.067821	GGTTCCCAGATCGTGCTAGAG	59.932	57.143	0.00	0.00	0.00	2.43
1788	1825	1.194781	AGTGGTTCCCAGATCGTGCT	61.195	55.000	0.00	0.00	32.34	4.40
1836	1874	2.286732	ATCTGGGCAAGGGCTCCT	60.287	61.111	0.00	0.00	40.96	3.69
1892	1930	2.538141	CCATATCCCATGGGGCCGT	61.538	63.158	30.93	16.20	43.94	5.68
1939	1977	1.002990	TGATGTGCCAGTCAGCCTG	60.003	57.895	0.00	0.00	41.15	4.85
1940	1978	1.298993	CTGATGTGCCAGTCAGCCT	59.701	57.895	0.00	0.00	35.87	4.58
1977	2015	0.249398	AATCACCAGTACAGCCCGAC	59.751	55.000	0.00	0.00	0.00	4.79
1979	2017	0.036388	ACAATCACCAGTACAGCCCG	60.036	55.000	0.00	0.00	0.00	6.13
1987	2025	1.056660	ACCTTCGGACAATCACCAGT	58.943	50.000	0.00	0.00	0.00	4.00
1994	2032	0.321653	GACTGCCACCTTCGGACAAT	60.322	55.000	0.00	0.00	0.00	2.71
2010	2048	2.280389	CAGCGTGTGCACCAGACT	60.280	61.111	15.69	3.55	46.23	3.24
2027	2065	6.570692	TCTACTTTATGAATCTCCGTCAACC	58.429	40.000	0.00	0.00	0.00	3.77
2030	2068	6.294010	CGGATCTACTTTATGAATCTCCGTCA	60.294	42.308	0.00	0.00	38.57	4.35
2044	2082	2.823747	GGTTTTTGCCCGGATCTACTTT	59.176	45.455	0.73	0.00	0.00	2.66
2045	2083	2.041216	AGGTTTTTGCCCGGATCTACTT	59.959	45.455	0.73	0.00	0.00	2.24
2048	2086	1.953311	GCAGGTTTTTGCCCGGATCTA	60.953	52.381	0.73	0.00	38.13	1.98
2058	2096	3.524541	AGCAACTGAAAGCAGGTTTTTG	58.475	40.909	0.00	1.71	39.62	2.44
2059	2097	3.893326	AGCAACTGAAAGCAGGTTTTT	57.107	38.095	0.00	0.00	39.62	1.94
2110	2151	4.502259	GGCGATGTCTTCCAAGATGTAGAT	60.502	45.833	0.00	0.00	37.39	1.98
2116	2157	0.824109	TCGGCGATGTCTTCCAAGAT	59.176	50.000	4.99	0.00	37.39	2.40
2121	2162	1.066587	CTCCTCGGCGATGTCTTCC	59.933	63.158	11.27	0.00	0.00	3.46
2177	2218	5.450550	GCCGTCATCCGATCATATGATCTAA	60.451	44.000	32.66	23.87	46.58	2.10
2185	2226	1.176619	ACCGCCGTCATCCGATCATA	61.177	55.000	0.00	0.00	39.56	2.15
2204	2245	1.480954	GGGGAGAACGATACAAGAGCA	59.519	52.381	0.00	0.00	0.00	4.26
2236	2277	1.171308	CAATGCACACCTCCAAGGAG	58.829	55.000	9.20	9.20	37.67	3.69
2256	2297	2.196595	CCATCCACTGGTCCCTTAAGA	58.803	52.381	3.36	0.00	40.49	2.10
2274	2315	0.320073	CCGCTCAACCGTTAGAACCA	60.320	55.000	0.00	0.00	0.00	3.67
2279	2320	1.193874	GAAACACCGCTCAACCGTTAG	59.806	52.381	0.00	0.00	0.00	2.34
2280	2321	1.219646	GAAACACCGCTCAACCGTTA	58.780	50.000	0.00	0.00	0.00	3.18
2294	2335	6.017523	ACAACATCAATACGTCACATGAAACA	60.018	34.615	0.00	0.00	0.00	2.83
2295	2336	6.303022	CACAACATCAATACGTCACATGAAAC	59.697	38.462	0.00	0.00	0.00	2.78
2308	2349	4.469586	TGCCTAGACTCCACAACATCAATA	59.530	41.667	0.00	0.00	0.00	1.90
2311	2368	2.028112	GTGCCTAGACTCCACAACATCA	60.028	50.000	0.00	0.00	0.00	3.07
2317	2374	0.965866	CCTCGTGCCTAGACTCCACA	60.966	60.000	0.00	0.00	0.00	4.17
2331	2388	4.057428	GACCTCGCAGCACCTCGT	62.057	66.667	0.00	0.00	0.00	4.18
2334	2392	3.386237	GGAGACCTCGCAGCACCT	61.386	66.667	0.00	0.00	0.00	4.00
2351	2409	1.496403	ATCATCATGCAGCTGTCGCG	61.496	55.000	16.64	0.00	42.32	5.87
2359	2417	1.568025	CGCGTCCATCATCATGCAG	59.432	57.895	0.00	0.00	0.00	4.41
2363	2421	0.664466	CTACGCGCGTCCATCATCAT	60.664	55.000	41.35	13.64	0.00	2.45
2427	2485	1.742900	CTGGCGCATAGACGTTGTCG	61.743	60.000	10.83	0.00	37.67	4.35
2433	2491	1.131771	CATGTACTGGCGCATAGACG	58.868	55.000	10.83	0.00	0.00	4.18
2437	2495	1.336795	CGGATCATGTACTGGCGCATA	60.337	52.381	10.83	0.00	0.00	3.14
2456	2514	2.034878	TCTTCCACTGATCCATCCTCG	58.965	52.381	0.00	0.00	0.00	4.63

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.