Multiple sequence alignment - TraesCS5D01G552200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G552200 chr5D 100.000 3461 0 0 1 3461 557776110 557779570 0.000000e+00 6392.0
1 TraesCS5D01G552200 chr5D 82.828 99 17 0 1779 1877 342712641 342712543 4.760000e-14 89.8
2 TraesCS5D01G552200 chr5D 83.158 95 16 0 1783 1877 238557411 238557317 1.710000e-13 87.9
3 TraesCS5D01G552200 chr4A 90.909 1408 91 18 1161 2555 610262871 610261488 0.000000e+00 1857.0
4 TraesCS5D01G552200 chr4A 91.851 1178 49 14 4 1164 610264059 610262912 0.000000e+00 1600.0
5 TraesCS5D01G552200 chr4A 88.931 262 26 3 2677 2936 440189462 440189202 1.550000e-83 320.0
6 TraesCS5D01G552200 chr4A 82.888 187 24 7 159 343 666932564 666932744 9.940000e-36 161.0
7 TraesCS5D01G552200 chr5B 89.262 1192 78 21 4 1164 704914236 704915408 0.000000e+00 1447.0
8 TraesCS5D01G552200 chr5B 92.060 869 57 7 1680 2537 704916405 704917272 0.000000e+00 1212.0
9 TraesCS5D01G552200 chr5B 96.255 267 4 6 1160 1425 704915448 704915709 1.910000e-117 433.0
10 TraesCS5D01G552200 chr5B 85.542 83 12 0 1780 1862 266501783 266501865 1.710000e-13 87.9
11 TraesCS5D01G552200 chr5B 81.818 99 18 0 1779 1877 402751170 402751072 2.210000e-12 84.2
12 TraesCS5D01G552200 chr2B 87.524 529 38 6 2933 3461 788687687 788687187 1.380000e-163 586.0
13 TraesCS5D01G552200 chr2B 94.400 125 7 0 2556 2680 788687806 788687682 3.530000e-45 193.0
14 TraesCS5D01G552200 chr2B 82.418 91 14 2 1060 1149 489848963 489849052 1.030000e-10 78.7
15 TraesCS5D01G552200 chr5A 91.640 311 14 3 3151 3461 353169056 353169354 1.490000e-113 420.0
16 TraesCS5D01G552200 chr5A 94.262 122 7 0 2556 2677 353168923 353169044 1.640000e-43 187.0
17 TraesCS5D01G552200 chr5A 85.227 88 13 0 1775 1862 316085395 316085482 1.320000e-14 91.6
18 TraesCS5D01G552200 chr3A 93.511 262 15 2 2675 2935 279554743 279554483 4.190000e-104 388.0
19 TraesCS5D01G552200 chr3A 83.069 189 24 7 157 343 660056314 660056132 7.680000e-37 165.0
20 TraesCS5D01G552200 chr3A 94.118 34 2 0 2550 2583 14037309 14037342 6.000000e-03 52.8
21 TraesCS5D01G552200 chr2A 91.440 257 22 0 2677 2933 36196513 36196257 1.530000e-93 353.0
22 TraesCS5D01G552200 chr2A 90.909 242 16 6 2677 2917 702943684 702943920 1.550000e-83 320.0
23 TraesCS5D01G552200 chr2A 87.342 79 10 0 1779 1857 104450754 104450832 1.320000e-14 91.6
24 TraesCS5D01G552200 chr2A 94.595 37 1 1 2901 2937 42775993 42776028 4.830000e-04 56.5
25 TraesCS5D01G552200 chr7D 90.114 263 19 4 2677 2933 591013000 591012739 5.530000e-88 335.0
26 TraesCS5D01G552200 chr7D 82.741 197 24 9 151 343 154207197 154207387 2.140000e-37 167.0
27 TraesCS5D01G552200 chr7A 90.551 254 20 1 2677 2926 357694979 357695232 1.990000e-87 333.0
28 TraesCS5D01G552200 chr7A 91.139 237 19 2 2674 2909 706490008 706490243 1.550000e-83 320.0
29 TraesCS5D01G552200 chr6B 89.535 258 23 3 2678 2933 244954469 244954724 1.200000e-84 324.0
30 TraesCS5D01G552200 chr6B 83.158 190 24 7 158 345 618130967 618131150 2.140000e-37 167.0
31 TraesCS5D01G552200 chr6B 82.723 191 24 8 155 343 40492830 40492647 9.940000e-36 161.0
32 TraesCS5D01G552200 chr1A 87.970 266 25 7 2673 2937 371176725 371176466 1.210000e-79 307.0
33 TraesCS5D01G552200 chr1A 82.723 191 24 8 156 343 531882062 531881878 9.940000e-36 161.0
34 TraesCS5D01G552200 chr7B 82.888 187 24 7 159 343 508657031 508656851 9.940000e-36 161.0
35 TraesCS5D01G552200 chr2D 87.342 79 10 0 1779 1857 108313428 108313506 1.320000e-14 91.6
36 TraesCS5D01G552200 chr2D 82.418 91 14 2 1060 1149 417625131 417625220 1.030000e-10 78.7
37 TraesCS5D01G552200 chr3B 86.667 60 8 0 2885 2944 177683349 177683290 2.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G552200 chr5D 557776110 557779570 3460 False 6392.000000 6392 100.000000 1 3461 1 chr5D.!!$F1 3460
1 TraesCS5D01G552200 chr4A 610261488 610264059 2571 True 1728.500000 1857 91.380000 4 2555 2 chr4A.!!$R2 2551
2 TraesCS5D01G552200 chr5B 704914236 704917272 3036 False 1030.666667 1447 92.525667 4 2537 3 chr5B.!!$F2 2533
3 TraesCS5D01G552200 chr2B 788687187 788687806 619 True 389.500000 586 90.962000 2556 3461 2 chr2B.!!$R1 905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 768 0.245539 GCATGCATGGAAAGCACACT 59.754 50.0 27.34 0.0 45.95 3.55 F
1332 1423 0.397254 GACCCGGGATCAAGAGAGGA 60.397 60.0 32.02 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2640 0.175760 GCTTCGAGACAGCCATGGTA 59.824 55.0 14.67 0.0 0.0 3.25 R
3206 3807 0.177604 CTTCTTCTGCAGCTCCGGAT 59.822 55.0 9.47 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.466192 CGCTTGATCGTACGTACCACA 60.466 52.381 19.67 13.66 0.00 4.17
43 44 3.430895 CGTACGTACCACATGAAAGCTTT 59.569 43.478 19.67 12.53 0.00 3.51
102 103 3.181524 CCAAAAATGCTACACGTACGGAG 60.182 47.826 21.06 14.04 0.00 4.63
103 104 3.581024 AAAATGCTACACGTACGGAGA 57.419 42.857 21.06 2.56 0.00 3.71
105 106 3.581024 AATGCTACACGTACGGAGAAA 57.419 42.857 21.06 6.34 0.00 2.52
108 109 2.095567 TGCTACACGTACGGAGAAAGTC 60.096 50.000 21.06 10.60 0.00 3.01
175 178 2.933495 TCGAGCTTTGCTACACGTAT 57.067 45.000 0.00 0.00 39.88 3.06
178 181 1.933853 GAGCTTTGCTACACGTATGGG 59.066 52.381 0.00 0.00 39.88 4.00
179 182 1.014352 GCTTTGCTACACGTATGGGG 58.986 55.000 0.00 0.00 0.00 4.96
180 183 1.663695 CTTTGCTACACGTATGGGGG 58.336 55.000 0.00 0.00 0.00 5.40
181 184 1.208535 CTTTGCTACACGTATGGGGGA 59.791 52.381 0.00 0.00 0.00 4.81
182 185 1.502690 TTGCTACACGTATGGGGGAT 58.497 50.000 0.00 0.00 0.00 3.85
183 186 1.502690 TGCTACACGTATGGGGGATT 58.497 50.000 0.00 0.00 0.00 3.01
184 187 2.680251 TGCTACACGTATGGGGGATTA 58.320 47.619 0.00 0.00 0.00 1.75
185 188 2.366266 TGCTACACGTATGGGGGATTAC 59.634 50.000 0.00 0.00 0.00 1.89
186 189 2.608752 GCTACACGTATGGGGGATTACG 60.609 54.545 0.00 1.33 45.02 3.18
187 190 1.779221 ACACGTATGGGGGATTACGA 58.221 50.000 9.21 0.00 42.83 3.43
188 191 1.684983 ACACGTATGGGGGATTACGAG 59.315 52.381 9.21 4.28 42.83 4.18
189 192 1.958579 CACGTATGGGGGATTACGAGA 59.041 52.381 9.21 0.00 42.83 4.04
190 193 2.561419 CACGTATGGGGGATTACGAGAT 59.439 50.000 9.21 0.00 42.83 2.75
191 194 2.561419 ACGTATGGGGGATTACGAGATG 59.439 50.000 9.21 0.00 42.83 2.90
192 195 2.823747 CGTATGGGGGATTACGAGATGA 59.176 50.000 0.00 0.00 42.83 2.92
193 196 3.257375 CGTATGGGGGATTACGAGATGAA 59.743 47.826 0.00 0.00 42.83 2.57
213 232 1.835531 AGGGATTACAGGGTGTTACGG 59.164 52.381 0.00 0.00 0.00 4.02
232 251 4.555262 ACGGCAGTTTTTAATTGGTCATG 58.445 39.130 0.00 0.00 0.00 3.07
264 283 1.929494 AGGCTCACCCCCATTGAATTA 59.071 47.619 0.00 0.00 36.11 1.40
265 284 2.314549 AGGCTCACCCCCATTGAATTAA 59.685 45.455 0.00 0.00 36.11 1.40
266 285 3.051880 AGGCTCACCCCCATTGAATTAAT 60.052 43.478 0.00 0.00 36.11 1.40
267 286 3.711190 GGCTCACCCCCATTGAATTAATT 59.289 43.478 0.00 0.00 0.00 1.40
278 297 2.745968 TGAATTAATTCAGGTGGGGGC 58.254 47.619 23.86 0.00 41.51 5.80
284 303 0.542702 ATTCAGGTGGGGGCTGTTTG 60.543 55.000 0.00 0.00 0.00 2.93
293 312 0.679505 GGGGCTGTTTGGGAAGTTTC 59.320 55.000 0.00 0.00 0.00 2.78
361 383 6.594788 TTTTGATGAAAATCAGGGGAGAAG 57.405 37.500 0.00 0.00 31.46 2.85
390 412 7.611213 AGTGAAGAAGGTTCCGTAATTATTG 57.389 36.000 0.00 0.00 0.00 1.90
394 416 5.190677 AGAAGGTTCCGTAATTATTGGGTG 58.809 41.667 6.82 0.00 0.00 4.61
433 470 1.861542 TAGCATTTTTGGCGCGTGCT 61.862 50.000 21.89 19.77 46.75 4.40
517 554 1.060308 CGCAACGCAATTACTCCCG 59.940 57.895 0.00 0.00 0.00 5.14
544 581 1.866880 GCACCAGCTGCACAAAAGAAG 60.867 52.381 8.66 0.00 46.29 2.85
549 586 1.286880 CTGCACAAAAGAAGCCCCG 59.713 57.895 0.00 0.00 0.00 5.73
557 594 0.771755 AAAGAAGCCCCGGAGAAAGT 59.228 50.000 0.73 0.00 0.00 2.66
565 602 2.108168 CCCCGGAGAAAGTGACAGATA 58.892 52.381 0.73 0.00 0.00 1.98
627 664 2.818130 TTCATGTGGGAAAAGCAAGC 57.182 45.000 0.00 0.00 0.00 4.01
639 676 3.443099 AAAGCAAGCCAAAGTTCACTC 57.557 42.857 0.00 0.00 0.00 3.51
731 768 0.245539 GCATGCATGGAAAGCACACT 59.754 50.000 27.34 0.00 45.95 3.55
789 826 0.964358 ACATGCAGCTGAGGAAAGCC 60.964 55.000 20.43 0.00 44.68 4.35
825 862 2.328099 GCAGGGCTTGGTGTCTTCG 61.328 63.158 0.00 0.00 0.00 3.79
970 1017 5.195848 ACCTAGGTACTCTTCAACTAGCT 57.804 43.478 14.41 0.00 41.75 3.32
971 1018 6.324601 ACCTAGGTACTCTTCAACTAGCTA 57.675 41.667 14.41 0.00 41.75 3.32
972 1019 6.913545 ACCTAGGTACTCTTCAACTAGCTAT 58.086 40.000 14.41 0.00 41.75 2.97
973 1020 8.043429 ACCTAGGTACTCTTCAACTAGCTATA 57.957 38.462 14.41 0.00 41.75 1.31
974 1021 8.671409 ACCTAGGTACTCTTCAACTAGCTATAT 58.329 37.037 14.41 0.00 41.75 0.86
1011 1058 3.981071 AGCTATATTATCTGGCGGCAA 57.019 42.857 14.48 4.62 0.00 4.52
1030 1077 3.399181 GACGACATGGGGAGGCCA 61.399 66.667 5.01 0.00 0.00 5.36
1196 1287 7.331026 TCTTGTCTTTTGATCGACCAATCTAT 58.669 34.615 0.00 0.00 0.00 1.98
1332 1423 0.397254 GACCCGGGATCAAGAGAGGA 60.397 60.000 32.02 0.00 0.00 3.71
1371 1462 6.630131 TGAGGAAGGGATAATCATACACCTA 58.370 40.000 0.00 0.00 0.00 3.08
1409 1500 6.595716 GGCAACAAGTAAGTAATCATGTCTCT 59.404 38.462 0.00 0.00 0.00 3.10
1530 1700 7.763985 CACTTTGTTCCAACTAAAATCCTTTGT 59.236 33.333 0.00 0.00 0.00 2.83
1541 1718 8.141835 ACTAAAATCCTTTGTGTTGAATTTGC 57.858 30.769 0.00 0.00 0.00 3.68
1571 1748 5.937975 ATTTCCATGTACCATCAAAAGGG 57.062 39.130 0.00 0.00 0.00 3.95
1572 1749 4.666412 TTCCATGTACCATCAAAAGGGA 57.334 40.909 0.00 0.00 0.00 4.20
1575 1752 6.334378 TCCATGTACCATCAAAAGGGATTA 57.666 37.500 0.00 0.00 0.00 1.75
1577 1754 7.361438 TCCATGTACCATCAAAAGGGATTAAT 58.639 34.615 0.00 0.00 0.00 1.40
1578 1755 7.505585 TCCATGTACCATCAAAAGGGATTAATC 59.494 37.037 6.93 6.93 0.00 1.75
1579 1756 6.935741 TGTACCATCAAAAGGGATTAATCG 57.064 37.500 9.32 0.00 0.00 3.34
1581 1758 7.113437 TGTACCATCAAAAGGGATTAATCGAA 58.887 34.615 9.32 0.00 0.00 3.71
1582 1759 7.777910 TGTACCATCAAAAGGGATTAATCGAAT 59.222 33.333 9.32 0.00 0.00 3.34
1584 1761 7.491682 ACCATCAAAAGGGATTAATCGAATTG 58.508 34.615 9.32 11.07 0.00 2.32
1585 1762 6.421801 CCATCAAAAGGGATTAATCGAATTGC 59.578 38.462 9.32 0.00 0.00 3.56
1586 1763 6.522625 TCAAAAGGGATTAATCGAATTGCA 57.477 33.333 9.32 0.00 0.00 4.08
1593 1770 5.334414 GGGATTAATCGAATTGCAGTGCTAG 60.334 44.000 17.60 3.28 0.00 3.42
1635 1812 6.042143 TCTCCAAAATTTTGTCTTGCTTGTC 58.958 36.000 25.25 0.00 36.45 3.18
1642 1819 6.699575 ATTTTGTCTTGCTTGTCTAGTGTT 57.300 33.333 0.00 0.00 0.00 3.32
1645 1822 6.844696 TTGTCTTGCTTGTCTAGTGTTAAG 57.155 37.500 0.00 0.00 0.00 1.85
1648 1825 6.183360 TGTCTTGCTTGTCTAGTGTTAAGTCT 60.183 38.462 0.00 0.00 0.00 3.24
1651 1828 8.585881 TCTTGCTTGTCTAGTGTTAAGTCTATT 58.414 33.333 0.00 0.00 0.00 1.73
1652 1829 9.856488 CTTGCTTGTCTAGTGTTAAGTCTATTA 57.144 33.333 0.00 0.00 0.00 0.98
1681 1858 7.499232 AGCAAAACTATAACTTTGTGACAGACT 59.501 33.333 7.62 0.00 35.42 3.24
1733 2315 9.227777 ACTATTCTATGTTTCCCAGTTTTGTAC 57.772 33.333 0.00 0.00 0.00 2.90
1736 2318 2.645802 TGTTTCCCAGTTTTGTACGCT 58.354 42.857 0.00 0.00 0.00 5.07
1752 2342 0.592247 CGCTTGTGTGTGAACTTGGC 60.592 55.000 0.00 0.00 0.00 4.52
1772 2364 3.243907 GGCGCTGACTATTCTTCCTATGT 60.244 47.826 7.64 0.00 0.00 2.29
1853 2445 2.910688 ACTACTGGAACACACACCTG 57.089 50.000 0.00 0.00 0.00 4.00
1892 2484 2.118683 CTGCAACAACAAACACATCCG 58.881 47.619 0.00 0.00 0.00 4.18
1916 2508 1.728971 GATCACTTCTTCCAGCACACG 59.271 52.381 0.00 0.00 0.00 4.49
1926 2518 4.626081 AGCACACGTCCACTGCCC 62.626 66.667 0.00 0.00 0.00 5.36
1928 2520 3.941188 CACACGTCCACTGCCCCT 61.941 66.667 0.00 0.00 0.00 4.79
1991 2583 0.528470 GCAGCAGTAACCTCGACTCT 59.472 55.000 0.00 0.00 0.00 3.24
2048 2640 1.599797 GGGCAACGTTACACCTGCT 60.600 57.895 0.00 0.00 35.13 4.24
2057 2649 1.065418 GTTACACCTGCTACCATGGCT 60.065 52.381 13.04 1.45 0.00 4.75
2105 2697 2.768344 AAGGCCCCATCGACGGAT 60.768 61.111 0.00 0.00 0.00 4.18
2106 2698 2.808206 AAGGCCCCATCGACGGATC 61.808 63.158 0.00 0.00 0.00 3.36
2111 2703 2.796193 CCCATCGACGGATCTGGCA 61.796 63.158 8.45 0.00 0.00 4.92
2150 2742 1.811266 CATGCAGGAGTTCCGGACG 60.811 63.158 1.83 0.00 42.08 4.79
2169 2761 3.011517 ATGGAGAGGCCGGTGCTT 61.012 61.111 1.90 0.00 40.66 3.91
2210 2802 1.242665 ACAGGTTCTCGTCCTCGGAC 61.243 60.000 6.01 6.01 41.40 4.79
2217 2809 2.927028 TCTCGTCCTCGGACATATTGA 58.073 47.619 15.77 4.11 44.77 2.57
2229 2821 0.461163 CATATTGACCGGACGTGGCA 60.461 55.000 9.46 0.00 0.00 4.92
2236 2828 4.680237 CGGACGTGGCAAGGCTGA 62.680 66.667 9.76 0.00 0.00 4.26
2287 2879 1.374252 GGTTGCTCGACGACATGGT 60.374 57.895 0.00 0.00 33.88 3.55
2387 2986 3.325135 CCCTGTCTGTTTCTTACCACTCT 59.675 47.826 0.00 0.00 0.00 3.24
2481 3081 3.574396 CGAGCTCCATATGTCCTCCTTAA 59.426 47.826 8.47 0.00 0.00 1.85
2490 3090 2.186125 CCTCCTTAACCCCGTCGC 59.814 66.667 0.00 0.00 0.00 5.19
2503 3104 2.604174 CGTCGCCCGCTTGTTCTTT 61.604 57.895 0.00 0.00 0.00 2.52
2529 3130 1.269778 GGACTCGCAGCTGTATATGCA 60.270 52.381 16.64 0.00 42.68 3.96
2530 3131 2.611473 GGACTCGCAGCTGTATATGCAT 60.611 50.000 16.64 3.79 42.68 3.96
2531 3132 2.410939 ACTCGCAGCTGTATATGCATG 58.589 47.619 16.64 0.00 42.68 4.06
2532 3133 1.128136 CTCGCAGCTGTATATGCATGC 59.872 52.381 16.64 11.82 42.68 4.06
2533 3134 0.869730 CGCAGCTGTATATGCATGCA 59.130 50.000 25.04 25.04 42.68 3.96
2534 3135 1.467342 CGCAGCTGTATATGCATGCAT 59.533 47.619 33.92 33.92 42.68 3.96
2561 3162 7.247728 TGCGTATTGACAGAATTATGGAAAAC 58.752 34.615 4.88 0.00 0.00 2.43
2589 3190 2.979814 TCATCCGGTTGATCAATCGT 57.020 45.000 32.69 17.53 42.91 3.73
2590 3191 2.549926 TCATCCGGTTGATCAATCGTG 58.450 47.619 32.69 26.16 42.91 4.35
2648 3249 3.330853 CTCCACGCGCCGCTTATC 61.331 66.667 5.73 0.00 0.00 1.75
2650 3251 2.890474 CCACGCGCCGCTTATCTT 60.890 61.111 5.73 0.00 0.00 2.40
2674 3275 1.424638 CCTCCCTTATCCCACGATGT 58.575 55.000 0.00 0.00 0.00 3.06
2675 3276 1.070758 CCTCCCTTATCCCACGATGTG 59.929 57.143 0.00 0.00 0.00 3.21
2676 3277 2.039418 CTCCCTTATCCCACGATGTGA 58.961 52.381 0.00 0.00 35.23 3.58
2677 3278 2.036475 CTCCCTTATCCCACGATGTGAG 59.964 54.545 0.00 0.00 35.23 3.51
2678 3279 1.070758 CCCTTATCCCACGATGTGAGG 59.929 57.143 0.00 0.00 35.23 3.86
2679 3280 1.541233 CCTTATCCCACGATGTGAGGC 60.541 57.143 0.00 0.00 35.23 4.70
2680 3281 1.414181 CTTATCCCACGATGTGAGGCT 59.586 52.381 0.00 0.00 35.23 4.58
2681 3282 0.752658 TATCCCACGATGTGAGGCTG 59.247 55.000 0.00 0.00 35.23 4.85
2682 3283 1.976132 ATCCCACGATGTGAGGCTGG 61.976 60.000 0.00 0.00 35.23 4.85
2683 3284 2.665000 CCACGATGTGAGGCTGGT 59.335 61.111 0.00 0.00 35.23 4.00
2684 3285 1.003355 CCACGATGTGAGGCTGGTT 60.003 57.895 0.00 0.00 35.23 3.67
2685 3286 1.300971 CCACGATGTGAGGCTGGTTG 61.301 60.000 0.00 0.00 35.23 3.77
2686 3287 0.603707 CACGATGTGAGGCTGGTTGT 60.604 55.000 0.00 0.00 35.23 3.32
2687 3288 0.973632 ACGATGTGAGGCTGGTTGTA 59.026 50.000 0.00 0.00 0.00 2.41
2688 3289 1.346395 ACGATGTGAGGCTGGTTGTAA 59.654 47.619 0.00 0.00 0.00 2.41
2689 3290 2.027192 ACGATGTGAGGCTGGTTGTAAT 60.027 45.455 0.00 0.00 0.00 1.89
2690 3291 2.352651 CGATGTGAGGCTGGTTGTAATG 59.647 50.000 0.00 0.00 0.00 1.90
2691 3292 2.198827 TGTGAGGCTGGTTGTAATGG 57.801 50.000 0.00 0.00 0.00 3.16
2692 3293 1.271871 TGTGAGGCTGGTTGTAATGGG 60.272 52.381 0.00 0.00 0.00 4.00
2693 3294 0.331278 TGAGGCTGGTTGTAATGGGG 59.669 55.000 0.00 0.00 0.00 4.96
2694 3295 0.623723 GAGGCTGGTTGTAATGGGGA 59.376 55.000 0.00 0.00 0.00 4.81
2695 3296 0.625849 AGGCTGGTTGTAATGGGGAG 59.374 55.000 0.00 0.00 0.00 4.30
2696 3297 0.331616 GGCTGGTTGTAATGGGGAGT 59.668 55.000 0.00 0.00 0.00 3.85
2697 3298 1.562475 GGCTGGTTGTAATGGGGAGTA 59.438 52.381 0.00 0.00 0.00 2.59
2698 3299 2.174854 GGCTGGTTGTAATGGGGAGTAT 59.825 50.000 0.00 0.00 0.00 2.12
2699 3300 3.477530 GCTGGTTGTAATGGGGAGTATC 58.522 50.000 0.00 0.00 0.00 2.24
2700 3301 3.118038 GCTGGTTGTAATGGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
2701 3302 4.446311 GCTGGTTGTAATGGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
2702 3303 5.221843 GCTGGTTGTAATGGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
2703 3304 6.522459 GCTGGTTGTAATGGGGAGTATCATAT 60.522 42.308 0.00 0.00 36.25 1.78
2704 3305 7.311046 GCTGGTTGTAATGGGGAGTATCATATA 60.311 40.741 0.00 0.00 36.25 0.86
2705 3306 7.913789 TGGTTGTAATGGGGAGTATCATATAC 58.086 38.462 0.00 0.00 36.25 1.47
2706 3307 7.737607 TGGTTGTAATGGGGAGTATCATATACT 59.262 37.037 0.00 0.00 36.25 2.12
2707 3308 9.263446 GGTTGTAATGGGGAGTATCATATACTA 57.737 37.037 0.00 0.00 36.25 1.82
2715 3316 9.868160 TGGGGAGTATCATATACTAGTATCATG 57.132 37.037 18.68 17.93 36.25 3.07
2716 3317 8.798402 GGGGAGTATCATATACTAGTATCATGC 58.202 40.741 18.68 12.34 36.25 4.06
2717 3318 9.355916 GGGAGTATCATATACTAGTATCATGCA 57.644 37.037 18.68 1.71 36.25 3.96
2752 3353 8.299990 AGTGTATGATACTATCTCCCTAATGC 57.700 38.462 4.03 0.00 0.00 3.56
2753 3354 7.895962 AGTGTATGATACTATCTCCCTAATGCA 59.104 37.037 4.03 0.00 0.00 3.96
2754 3355 8.700051 GTGTATGATACTATCTCCCTAATGCAT 58.300 37.037 4.03 0.00 0.00 3.96
2755 3356 9.936329 TGTATGATACTATCTCCCTAATGCATA 57.064 33.333 0.00 0.00 0.00 3.14
2798 3399 9.946165 TCACGTAGTACTCTATTTATTGTCATG 57.054 33.333 0.00 0.00 41.61 3.07
2799 3400 8.691727 CACGTAGTACTCTATTTATTGTCATGC 58.308 37.037 0.00 0.00 41.61 4.06
2800 3401 8.410912 ACGTAGTACTCTATTTATTGTCATGCA 58.589 33.333 0.00 0.00 41.94 3.96
2801 3402 9.411801 CGTAGTACTCTATTTATTGTCATGCAT 57.588 33.333 0.00 0.00 0.00 3.96
2815 3416 4.405116 TCATGCATGACACATAGTAGCA 57.595 40.909 25.42 0.00 37.13 3.49
2816 3417 4.964593 TCATGCATGACACATAGTAGCAT 58.035 39.130 25.42 0.00 41.24 3.79
2817 3418 6.100404 TCATGCATGACACATAGTAGCATA 57.900 37.500 25.42 0.00 39.67 3.14
2818 3419 6.161381 TCATGCATGACACATAGTAGCATAG 58.839 40.000 25.42 0.00 39.67 2.23
2819 3420 4.309933 TGCATGACACATAGTAGCATAGC 58.690 43.478 0.00 0.00 30.65 2.97
2820 3421 4.202243 TGCATGACACATAGTAGCATAGCA 60.202 41.667 0.00 0.00 30.65 3.49
2821 3422 4.934001 GCATGACACATAGTAGCATAGCAT 59.066 41.667 0.00 0.00 0.00 3.79
2822 3423 5.410746 GCATGACACATAGTAGCATAGCATT 59.589 40.000 0.00 0.00 0.00 3.56
2823 3424 6.072838 GCATGACACATAGTAGCATAGCATTT 60.073 38.462 0.00 0.00 0.00 2.32
2824 3425 7.118245 GCATGACACATAGTAGCATAGCATTTA 59.882 37.037 0.00 0.00 0.00 1.40
2825 3426 9.159364 CATGACACATAGTAGCATAGCATTTAT 57.841 33.333 0.00 0.00 0.00 1.40
2826 3427 9.730705 ATGACACATAGTAGCATAGCATTTATT 57.269 29.630 0.00 0.00 0.00 1.40
2835 3436 9.838339 AGTAGCATAGCATTTATTATGATACCC 57.162 33.333 13.26 0.00 44.31 3.69
2836 3437 9.613428 GTAGCATAGCATTTATTATGATACCCA 57.387 33.333 8.09 0.00 40.57 4.51
2837 3438 8.511604 AGCATAGCATTTATTATGATACCCAC 57.488 34.615 0.00 0.00 30.54 4.61
2838 3439 8.331740 AGCATAGCATTTATTATGATACCCACT 58.668 33.333 0.00 0.00 30.54 4.00
2839 3440 8.616076 GCATAGCATTTATTATGATACCCACTC 58.384 37.037 0.00 0.00 30.54 3.51
2840 3441 9.113838 CATAGCATTTATTATGATACCCACTCC 57.886 37.037 0.00 0.00 30.54 3.85
2841 3442 7.335127 AGCATTTATTATGATACCCACTCCT 57.665 36.000 0.00 0.00 0.00 3.69
2842 3443 7.398024 AGCATTTATTATGATACCCACTCCTC 58.602 38.462 0.00 0.00 0.00 3.71
2843 3444 7.238514 AGCATTTATTATGATACCCACTCCTCT 59.761 37.037 0.00 0.00 0.00 3.69
2844 3445 7.885399 GCATTTATTATGATACCCACTCCTCTT 59.115 37.037 0.00 0.00 0.00 2.85
2845 3446 9.799106 CATTTATTATGATACCCACTCCTCTTT 57.201 33.333 0.00 0.00 0.00 2.52
2882 3483 8.867112 ATTCTATGACACATCATCAAAATTGC 57.133 30.769 0.00 0.00 42.15 3.56
2883 3484 6.798482 TCTATGACACATCATCAAAATTGCC 58.202 36.000 0.00 0.00 42.15 4.52
2884 3485 5.670792 ATGACACATCATCAAAATTGCCT 57.329 34.783 0.00 0.00 42.15 4.75
2885 3486 6.778834 ATGACACATCATCAAAATTGCCTA 57.221 33.333 0.00 0.00 42.15 3.93
2886 3487 6.198650 TGACACATCATCAAAATTGCCTAG 57.801 37.500 0.00 0.00 0.00 3.02
2887 3488 5.711506 TGACACATCATCAAAATTGCCTAGT 59.288 36.000 0.00 0.00 0.00 2.57
2888 3489 6.209192 TGACACATCATCAAAATTGCCTAGTT 59.791 34.615 0.00 0.00 0.00 2.24
2889 3490 6.996509 ACACATCATCAAAATTGCCTAGTTT 58.003 32.000 0.00 0.00 0.00 2.66
2890 3491 6.869913 ACACATCATCAAAATTGCCTAGTTTG 59.130 34.615 3.33 3.33 34.29 2.93
2891 3492 5.870978 ACATCATCAAAATTGCCTAGTTTGC 59.129 36.000 4.54 0.00 33.26 3.68
2892 3493 5.465532 TCATCAAAATTGCCTAGTTTGCA 57.534 34.783 4.54 0.00 36.84 4.08
2893 3494 6.040209 TCATCAAAATTGCCTAGTTTGCAT 57.960 33.333 0.00 0.00 38.76 3.96
2894 3495 5.870433 TCATCAAAATTGCCTAGTTTGCATG 59.130 36.000 0.00 0.00 38.76 4.06
2895 3496 3.995705 TCAAAATTGCCTAGTTTGCATGC 59.004 39.130 11.82 11.82 38.76 4.06
2896 3497 3.681593 AAATTGCCTAGTTTGCATGCA 57.318 38.095 18.46 18.46 38.76 3.96
2897 3498 3.899052 AATTGCCTAGTTTGCATGCAT 57.101 38.095 23.37 9.62 38.76 3.96
2898 3499 2.658373 TTGCCTAGTTTGCATGCATG 57.342 45.000 23.37 22.70 38.76 4.06
2899 3500 1.836802 TGCCTAGTTTGCATGCATGA 58.163 45.000 30.64 10.85 32.85 3.07
2900 3501 2.380941 TGCCTAGTTTGCATGCATGAT 58.619 42.857 30.64 12.49 32.85 2.45
2901 3502 3.553904 TGCCTAGTTTGCATGCATGATA 58.446 40.909 30.64 15.03 32.85 2.15
2902 3503 3.316029 TGCCTAGTTTGCATGCATGATAC 59.684 43.478 30.64 21.28 32.85 2.24
2903 3504 3.567164 GCCTAGTTTGCATGCATGATACT 59.433 43.478 30.64 26.11 0.00 2.12
2904 3505 4.756642 GCCTAGTTTGCATGCATGATACTA 59.243 41.667 30.64 25.87 0.00 1.82
2905 3506 5.106791 GCCTAGTTTGCATGCATGATACTAG 60.107 44.000 31.40 31.40 36.03 2.57
2906 3507 4.825546 AGTTTGCATGCATGATACTAGC 57.174 40.909 30.64 13.27 0.00 3.42
2907 3508 4.458397 AGTTTGCATGCATGATACTAGCT 58.542 39.130 30.64 13.21 0.00 3.32
2908 3509 5.614308 AGTTTGCATGCATGATACTAGCTA 58.386 37.500 30.64 6.92 0.00 3.32
2909 3510 6.236409 AGTTTGCATGCATGATACTAGCTAT 58.764 36.000 30.64 4.59 0.00 2.97
2910 3511 6.148976 AGTTTGCATGCATGATACTAGCTATG 59.851 38.462 30.64 0.23 0.00 2.23
2911 3512 5.410355 TGCATGCATGATACTAGCTATGA 57.590 39.130 30.64 0.00 0.00 2.15
2912 3513 5.985911 TGCATGCATGATACTAGCTATGAT 58.014 37.500 30.64 0.00 0.00 2.45
2913 3514 7.116075 TGCATGCATGATACTAGCTATGATA 57.884 36.000 30.64 0.00 0.00 2.15
2914 3515 6.982724 TGCATGCATGATACTAGCTATGATAC 59.017 38.462 30.64 6.47 0.00 2.24
2915 3516 7.147776 TGCATGCATGATACTAGCTATGATACT 60.148 37.037 30.64 0.00 0.00 2.12
2916 3517 8.355913 GCATGCATGATACTAGCTATGATACTA 58.644 37.037 30.64 0.00 0.00 1.82
2917 3518 9.676195 CATGCATGATACTAGCTATGATACTAC 57.324 37.037 22.59 0.00 0.00 2.73
2918 3519 8.226819 TGCATGATACTAGCTATGATACTACC 57.773 38.462 0.00 0.00 0.00 3.18
2919 3520 7.834181 TGCATGATACTAGCTATGATACTACCA 59.166 37.037 0.00 0.00 0.00 3.25
2920 3521 8.855110 GCATGATACTAGCTATGATACTACCAT 58.145 37.037 0.00 0.00 0.00 3.55
2926 3527 8.266392 ACTAGCTATGATACTACCATTACGAC 57.734 38.462 0.00 0.00 0.00 4.34
2927 3528 6.512342 AGCTATGATACTACCATTACGACC 57.488 41.667 0.00 0.00 0.00 4.79
2928 3529 6.008331 AGCTATGATACTACCATTACGACCA 58.992 40.000 0.00 0.00 0.00 4.02
2929 3530 6.151312 AGCTATGATACTACCATTACGACCAG 59.849 42.308 0.00 0.00 0.00 4.00
2930 3531 4.579454 TGATACTACCATTACGACCAGC 57.421 45.455 0.00 0.00 0.00 4.85
2931 3532 3.319972 TGATACTACCATTACGACCAGCC 59.680 47.826 0.00 0.00 0.00 4.85
2960 3561 2.050442 GCCGCACGTTTTTCCCAG 60.050 61.111 0.00 0.00 0.00 4.45
2993 3594 4.907809 TCTCGTCTTCAACCTCTCTCTAA 58.092 43.478 0.00 0.00 0.00 2.10
2994 3595 4.938832 TCTCGTCTTCAACCTCTCTCTAAG 59.061 45.833 0.00 0.00 0.00 2.18
2995 3596 4.907809 TCGTCTTCAACCTCTCTCTAAGA 58.092 43.478 0.00 0.00 0.00 2.10
2996 3597 5.502079 TCGTCTTCAACCTCTCTCTAAGAT 58.498 41.667 0.00 0.00 32.19 2.40
2997 3598 5.587043 TCGTCTTCAACCTCTCTCTAAGATC 59.413 44.000 0.00 0.00 32.19 2.75
2998 3599 5.588648 CGTCTTCAACCTCTCTCTAAGATCT 59.411 44.000 0.00 0.00 32.19 2.75
2999 3600 6.238374 CGTCTTCAACCTCTCTCTAAGATCTC 60.238 46.154 0.00 0.00 32.19 2.75
3000 3601 5.820423 TCTTCAACCTCTCTCTAAGATCTCG 59.180 44.000 0.00 0.00 32.19 4.04
3002 3603 2.858745 ACCTCTCTCTAAGATCTCGCC 58.141 52.381 0.00 0.00 32.19 5.54
3003 3604 2.159382 CCTCTCTCTAAGATCTCGCCC 58.841 57.143 0.00 0.00 32.19 6.13
3010 3611 2.099652 TAAGATCTCGCCCGGCATGG 62.100 60.000 10.77 0.00 37.55 3.66
3047 3648 0.910338 GGTAGTTTCCTCCTCCACCC 59.090 60.000 0.00 0.00 0.00 4.61
3051 3652 3.864983 TTTCCTCCTCCACCCGCCT 62.865 63.158 0.00 0.00 0.00 5.52
3063 3664 3.204827 CCGCCTGGCCGAAATCTG 61.205 66.667 14.12 0.00 0.00 2.90
3109 3710 2.815647 CCTCTCCCTCGCGCAAAC 60.816 66.667 8.75 0.00 0.00 2.93
3110 3711 2.815647 CTCTCCCTCGCGCAAACC 60.816 66.667 8.75 0.00 0.00 3.27
3119 3720 2.180017 GCGCAAACCCTGATGCTG 59.820 61.111 0.30 0.00 40.39 4.41
3120 3721 2.180017 CGCAAACCCTGATGCTGC 59.820 61.111 0.00 0.00 40.39 5.25
3121 3722 2.628696 CGCAAACCCTGATGCTGCA 61.629 57.895 4.13 4.13 40.39 4.41
3122 3723 1.214589 GCAAACCCTGATGCTGCAG 59.785 57.895 10.11 10.11 39.46 4.41
3123 3724 1.246056 GCAAACCCTGATGCTGCAGA 61.246 55.000 20.43 2.70 39.46 4.26
3124 3725 0.809385 CAAACCCTGATGCTGCAGAG 59.191 55.000 20.43 5.42 38.14 3.35
3125 3726 0.694771 AAACCCTGATGCTGCAGAGA 59.305 50.000 20.43 2.51 38.14 3.10
3126 3727 0.035630 AACCCTGATGCTGCAGAGAC 60.036 55.000 20.43 7.70 38.14 3.36
3127 3728 1.196766 ACCCTGATGCTGCAGAGACA 61.197 55.000 20.43 12.05 38.14 3.41
3128 3729 0.180642 CCCTGATGCTGCAGAGACAT 59.819 55.000 20.43 11.70 38.14 3.06
3129 3730 1.300481 CCTGATGCTGCAGAGACATG 58.700 55.000 20.43 6.62 38.14 3.21
3130 3731 0.658368 CTGATGCTGCAGAGACATGC 59.342 55.000 20.43 0.39 46.68 4.06
3131 3732 0.746923 TGATGCTGCAGAGACATGCC 60.747 55.000 20.43 1.46 45.91 4.40
3132 3733 1.773054 GATGCTGCAGAGACATGCCG 61.773 60.000 20.43 0.00 45.91 5.69
3133 3734 3.200593 GCTGCAGAGACATGCCGG 61.201 66.667 20.43 0.00 45.91 6.13
3134 3735 2.580815 CTGCAGAGACATGCCGGA 59.419 61.111 8.42 0.00 45.91 5.14
3135 3736 1.812922 CTGCAGAGACATGCCGGAC 60.813 63.158 8.42 0.00 45.91 4.79
3136 3737 2.512515 GCAGAGACATGCCGGACC 60.513 66.667 5.05 0.00 40.43 4.46
3137 3738 2.981302 CAGAGACATGCCGGACCA 59.019 61.111 5.05 0.00 0.00 4.02
3138 3739 1.448540 CAGAGACATGCCGGACCAC 60.449 63.158 5.05 0.00 0.00 4.16
3139 3740 2.125106 GAGACATGCCGGACCACC 60.125 66.667 5.05 0.00 0.00 4.61
3186 3787 0.107993 GTAGCTGCAGAGACATGCCA 60.108 55.000 20.43 0.00 45.91 4.92
3187 3788 0.107993 TAGCTGCAGAGACATGCCAC 60.108 55.000 20.43 0.00 45.91 5.01
3225 3826 0.177604 ATCCGGAGCTGCAGAAGAAG 59.822 55.000 20.43 2.21 0.00 2.85
3273 3874 2.735857 CGTTCGGGGGTCGTTGAC 60.736 66.667 0.00 0.00 40.32 3.18
3281 3882 3.041940 GGTCGTTGACGCCACCAG 61.042 66.667 8.89 0.00 36.57 4.00
3302 3903 2.125552 TGCAATGGAGCTCCGTCG 60.126 61.111 27.71 18.58 39.43 5.12
3305 3906 3.470888 AATGGAGCTCCGTCGGGG 61.471 66.667 27.71 9.71 39.43 5.73
3314 3915 4.760047 CCGTCGGGGCTGTGAAGG 62.760 72.222 2.34 0.00 0.00 3.46
3370 3971 2.126618 TTGTACAGAGCGTCGCCG 60.127 61.111 14.86 5.43 37.07 6.46
3449 4050 4.003788 CAACCCACTCGCCGGTCT 62.004 66.667 1.90 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.667199 AAGCGTGTACGGCCCAAC 60.667 61.111 6.55 0.00 40.23 3.77
1 2 2.457743 ATCAAGCGTGTACGGCCCAA 62.458 55.000 6.55 0.00 40.23 4.12
2 3 2.845752 GATCAAGCGTGTACGGCCCA 62.846 60.000 6.55 0.00 40.23 5.36
13 14 1.186030 GTGGTACGTACGATCAAGCG 58.814 55.000 24.41 0.00 37.29 4.68
33 34 5.105146 ACTCTCTCATCCGTAAAGCTTTCAT 60.105 40.000 16.57 1.05 0.00 2.57
43 44 3.710165 TCTAGACCACTCTCTCATCCGTA 59.290 47.826 0.00 0.00 0.00 4.02
102 103 4.296690 CATCCTAATCCCGTACGACTTTC 58.703 47.826 18.76 0.00 0.00 2.62
103 104 3.069158 CCATCCTAATCCCGTACGACTTT 59.931 47.826 18.76 9.12 0.00 2.66
105 106 2.236766 CCATCCTAATCCCGTACGACT 58.763 52.381 18.76 0.05 0.00 4.18
108 109 0.037605 GCCCATCCTAATCCCGTACG 60.038 60.000 8.69 8.69 0.00 3.67
175 178 2.047061 CCTTCATCTCGTAATCCCCCA 58.953 52.381 0.00 0.00 0.00 4.96
178 181 4.625607 AATCCCTTCATCTCGTAATCCC 57.374 45.455 0.00 0.00 0.00 3.85
179 182 6.097915 TGTAATCCCTTCATCTCGTAATCC 57.902 41.667 0.00 0.00 0.00 3.01
180 183 6.159988 CCTGTAATCCCTTCATCTCGTAATC 58.840 44.000 0.00 0.00 0.00 1.75
181 184 5.012148 CCCTGTAATCCCTTCATCTCGTAAT 59.988 44.000 0.00 0.00 0.00 1.89
182 185 4.344102 CCCTGTAATCCCTTCATCTCGTAA 59.656 45.833 0.00 0.00 0.00 3.18
183 186 3.895656 CCCTGTAATCCCTTCATCTCGTA 59.104 47.826 0.00 0.00 0.00 3.43
184 187 2.700897 CCCTGTAATCCCTTCATCTCGT 59.299 50.000 0.00 0.00 0.00 4.18
185 188 2.700897 ACCCTGTAATCCCTTCATCTCG 59.299 50.000 0.00 0.00 0.00 4.04
186 189 3.456277 ACACCCTGTAATCCCTTCATCTC 59.544 47.826 0.00 0.00 0.00 2.75
187 190 3.464828 ACACCCTGTAATCCCTTCATCT 58.535 45.455 0.00 0.00 0.00 2.90
188 191 3.933861 ACACCCTGTAATCCCTTCATC 57.066 47.619 0.00 0.00 0.00 2.92
189 192 4.383770 CGTAACACCCTGTAATCCCTTCAT 60.384 45.833 0.00 0.00 0.00 2.57
190 193 3.055675 CGTAACACCCTGTAATCCCTTCA 60.056 47.826 0.00 0.00 0.00 3.02
191 194 3.528532 CGTAACACCCTGTAATCCCTTC 58.471 50.000 0.00 0.00 0.00 3.46
192 195 2.237893 CCGTAACACCCTGTAATCCCTT 59.762 50.000 0.00 0.00 0.00 3.95
193 196 1.835531 CCGTAACACCCTGTAATCCCT 59.164 52.381 0.00 0.00 0.00 4.20
213 232 7.816640 TCTACTCATGACCAATTAAAAACTGC 58.183 34.615 0.00 0.00 0.00 4.40
232 251 2.415426 GAGCCTGCGCCTCTACTC 59.585 66.667 4.18 0.67 34.57 2.59
264 283 0.190815 AAACAGCCCCCACCTGAATT 59.809 50.000 0.00 0.00 34.47 2.17
265 284 0.542702 CAAACAGCCCCCACCTGAAT 60.543 55.000 0.00 0.00 34.47 2.57
266 285 1.152567 CAAACAGCCCCCACCTGAA 60.153 57.895 0.00 0.00 34.47 3.02
267 286 2.520458 CAAACAGCCCCCACCTGA 59.480 61.111 0.00 0.00 34.47 3.86
278 297 3.211045 TCCTTCGAAACTTCCCAAACAG 58.789 45.455 0.00 0.00 0.00 3.16
284 303 0.325272 AGCCTCCTTCGAAACTTCCC 59.675 55.000 0.00 0.00 0.00 3.97
293 312 1.069358 GGGATTCTACAGCCTCCTTCG 59.931 57.143 0.00 0.00 0.00 3.79
361 383 2.561858 ACGGAACCTTCTTCACTAGTCC 59.438 50.000 0.00 0.00 0.00 3.85
433 470 0.823460 TCGTGCACATCCATCAGCTA 59.177 50.000 18.64 0.00 0.00 3.32
532 569 2.199652 CCGGGGCTTCTTTTGTGCA 61.200 57.895 0.00 0.00 0.00 4.57
544 581 1.376037 CTGTCACTTTCTCCGGGGC 60.376 63.158 0.00 0.00 0.00 5.80
549 586 7.147811 ACCAATAGTCTATCTGTCACTTTCTCC 60.148 40.741 0.00 0.00 0.00 3.71
557 594 7.561356 TCTGATCAACCAATAGTCTATCTGTCA 59.439 37.037 0.00 0.00 0.00 3.58
565 602 5.104735 GGGACTTCTGATCAACCAATAGTCT 60.105 44.000 0.00 0.00 32.08 3.24
627 664 2.880268 TCACATGCAGAGTGAACTTTGG 59.120 45.455 19.05 0.00 42.57 3.28
731 768 0.325671 CCTTCCTCCTCCCTGTGCTA 60.326 60.000 0.00 0.00 0.00 3.49
825 862 4.166144 TCTCCCCATGGTCTCCTTTTATTC 59.834 45.833 11.73 0.00 0.00 1.75
1011 1058 3.771160 GCCTCCCCATGTCGTCGT 61.771 66.667 0.00 0.00 0.00 4.34
1030 1077 2.360350 CCATTGTCGCAGCAGGGT 60.360 61.111 0.00 0.00 0.00 4.34
1033 1080 2.872557 CCACCATTGTCGCAGCAG 59.127 61.111 0.00 0.00 0.00 4.24
1332 1423 1.425066 TCCTCATGCTGGGTGAAGTTT 59.575 47.619 5.03 0.00 0.00 2.66
1371 1462 3.873910 TTGCCAAGCAATGCCTGT 58.126 50.000 0.00 0.00 43.99 4.00
1404 1495 5.107298 GCAACACACAGTTCAAGATAGAGAC 60.107 44.000 0.00 0.00 38.74 3.36
1406 1497 4.993584 AGCAACACACAGTTCAAGATAGAG 59.006 41.667 0.00 0.00 38.74 2.43
1409 1500 4.702831 TCAGCAACACACAGTTCAAGATA 58.297 39.130 0.00 0.00 38.74 1.98
1419 1510 9.665719 TTAAATATTATCTCTCAGCAACACACA 57.334 29.630 0.00 0.00 0.00 3.72
1557 1734 7.562454 TTCGATTAATCCCTTTTGATGGTAC 57.438 36.000 9.87 0.00 0.00 3.34
1568 1745 3.316308 GCACTGCAATTCGATTAATCCCT 59.684 43.478 9.87 0.00 0.00 4.20
1571 1748 5.142962 GCTAGCACTGCAATTCGATTAATC 58.857 41.667 10.63 5.30 0.00 1.75
1572 1749 4.576053 TGCTAGCACTGCAATTCGATTAAT 59.424 37.500 14.93 0.00 37.51 1.40
1575 1752 2.096496 GTGCTAGCACTGCAATTCGATT 59.904 45.455 35.25 0.00 42.41 3.34
1577 1754 1.078709 GTGCTAGCACTGCAATTCGA 58.921 50.000 35.25 0.00 42.41 3.71
1578 1755 3.593247 GTGCTAGCACTGCAATTCG 57.407 52.632 35.25 0.00 42.41 3.34
1620 1797 7.335924 ACTTAACACTAGACAAGCAAGACAAAA 59.664 33.333 0.00 0.00 0.00 2.44
1681 1858 4.687901 TGACAGTTGAAGGTTCAGATGA 57.312 40.909 11.23 0.00 38.61 2.92
1714 2295 4.391155 AGCGTACAAAACTGGGAAACATA 58.609 39.130 0.00 0.00 0.00 2.29
1721 2303 1.673920 ACACAAGCGTACAAAACTGGG 59.326 47.619 0.00 0.00 0.00 4.45
1728 2310 2.623535 AGTTCACACACAAGCGTACAA 58.376 42.857 0.00 0.00 0.00 2.41
1733 2315 0.592247 GCCAAGTTCACACACAAGCG 60.592 55.000 0.00 0.00 0.00 4.68
1736 2318 1.029408 AGCGCCAAGTTCACACACAA 61.029 50.000 2.29 0.00 0.00 3.33
1752 2342 8.594881 AATTTACATAGGAAGAATAGTCAGCG 57.405 34.615 0.00 0.00 0.00 5.18
1772 2364 2.300956 TTGCTGCCCACCTGAATTTA 57.699 45.000 0.00 0.00 0.00 1.40
1853 2445 3.188254 GCAGCCTCTTCACTTTCTTCTTC 59.812 47.826 0.00 0.00 0.00 2.87
1916 2508 1.302949 TGCATTAGGGGCAGTGGAC 59.697 57.895 0.00 0.00 36.11 4.02
1926 2518 1.133790 GGTTTGCTCAGCTGCATTAGG 59.866 52.381 9.47 0.00 42.96 2.69
1928 2520 1.541147 GTGGTTTGCTCAGCTGCATTA 59.459 47.619 9.47 0.00 42.96 1.90
2040 2632 1.300963 CAGCCATGGTAGCAGGTGT 59.699 57.895 14.67 0.00 0.00 4.16
2048 2640 0.175760 GCTTCGAGACAGCCATGGTA 59.824 55.000 14.67 0.00 0.00 3.25
2057 2649 1.542030 GACTGGAAGAGCTTCGAGACA 59.458 52.381 23.25 7.68 44.75 3.41
2087 2679 2.996168 GATCCGTCGATGGGGCCTTG 62.996 65.000 23.40 0.00 0.00 3.61
2100 2692 1.478510 CTTGTAGTCTGCCAGATCCGT 59.521 52.381 0.00 0.00 0.00 4.69
2105 2697 2.615986 TACCCTTGTAGTCTGCCAGA 57.384 50.000 0.00 0.00 0.00 3.86
2106 2698 2.158900 CCATACCCTTGTAGTCTGCCAG 60.159 54.545 0.00 0.00 0.00 4.85
2111 2703 1.838077 GCCACCATACCCTTGTAGTCT 59.162 52.381 0.00 0.00 0.00 3.24
2150 2742 4.554036 GCACCGGCCTCTCCATCC 62.554 72.222 0.00 0.00 34.01 3.51
2169 2761 1.545428 GCCACTGGTCATGGAAACTGA 60.545 52.381 0.00 0.00 39.87 3.41
2210 2802 0.461163 TGCCACGTCCGGTCAATATG 60.461 55.000 0.00 0.00 0.00 1.78
2222 2814 2.591715 GTGTCAGCCTTGCCACGT 60.592 61.111 0.00 0.00 0.00 4.49
2236 2828 3.168528 AGAAGGTGGTGGCCGTGT 61.169 61.111 0.00 0.00 0.00 4.49
2318 2910 3.547567 GCAACCAGCAGAGATGTCT 57.452 52.632 0.00 0.00 44.79 3.41
2392 2991 0.243636 CCGGAAACACAAGATTGGCC 59.756 55.000 0.00 0.00 0.00 5.36
2490 3090 1.135689 CCGAATCAAAGAACAAGCGGG 60.136 52.381 0.00 0.00 34.29 6.13
2503 3104 1.153765 CAGCTGCGAGTCCGAATCA 60.154 57.895 0.00 0.00 38.22 2.57
2529 3130 6.564709 AATTCTGTCAATACGCATATGCAT 57.435 33.333 26.52 15.35 42.21 3.96
2530 3131 7.361116 CCATAATTCTGTCAATACGCATATGCA 60.361 37.037 26.52 9.36 42.21 3.96
2531 3132 6.963242 CCATAATTCTGTCAATACGCATATGC 59.037 38.462 18.08 18.08 37.78 3.14
2532 3133 8.255394 TCCATAATTCTGTCAATACGCATATG 57.745 34.615 0.00 0.00 0.00 1.78
2533 3134 8.846943 TTCCATAATTCTGTCAATACGCATAT 57.153 30.769 0.00 0.00 0.00 1.78
2534 3135 8.669946 TTTCCATAATTCTGTCAATACGCATA 57.330 30.769 0.00 0.00 0.00 3.14
2561 3162 5.874831 TGATCAACCGGATGATTTTAAACG 58.125 37.500 25.97 0.00 40.08 3.60
2647 3248 1.695989 GGGATAAGGGAGGGAGCAAGA 60.696 57.143 0.00 0.00 0.00 3.02
2648 3249 0.767998 GGGATAAGGGAGGGAGCAAG 59.232 60.000 0.00 0.00 0.00 4.01
2650 3251 0.694444 GTGGGATAAGGGAGGGAGCA 60.694 60.000 0.00 0.00 0.00 4.26
2674 3275 0.331278 CCCCATTACAACCAGCCTCA 59.669 55.000 0.00 0.00 0.00 3.86
2675 3276 0.623723 TCCCCATTACAACCAGCCTC 59.376 55.000 0.00 0.00 0.00 4.70
2676 3277 0.625849 CTCCCCATTACAACCAGCCT 59.374 55.000 0.00 0.00 0.00 4.58
2677 3278 0.331616 ACTCCCCATTACAACCAGCC 59.668 55.000 0.00 0.00 0.00 4.85
2678 3279 3.118038 TGATACTCCCCATTACAACCAGC 60.118 47.826 0.00 0.00 0.00 4.85
2679 3280 4.771114 TGATACTCCCCATTACAACCAG 57.229 45.455 0.00 0.00 0.00 4.00
2680 3281 7.737607 AGTATATGATACTCCCCATTACAACCA 59.262 37.037 0.00 0.00 0.00 3.67
2681 3282 8.147244 AGTATATGATACTCCCCATTACAACC 57.853 38.462 0.00 0.00 0.00 3.77
2689 3290 9.868160 CATGATACTAGTATATGATACTCCCCA 57.132 37.037 15.42 5.35 0.00 4.96
2690 3291 8.798402 GCATGATACTAGTATATGATACTCCCC 58.202 40.741 22.89 8.64 0.00 4.81
2691 3292 9.355916 TGCATGATACTAGTATATGATACTCCC 57.644 37.037 22.89 9.00 0.00 4.30
2726 3327 9.409918 GCATTAGGGAGATAGTATCATACACTA 57.590 37.037 12.66 10.34 33.22 2.74
2727 3328 7.895962 TGCATTAGGGAGATAGTATCATACACT 59.104 37.037 12.66 11.19 0.00 3.55
2728 3329 8.067751 TGCATTAGGGAGATAGTATCATACAC 57.932 38.462 12.66 4.84 0.00 2.90
2729 3330 8.844865 ATGCATTAGGGAGATAGTATCATACA 57.155 34.615 12.66 0.00 0.00 2.29
2772 3373 9.946165 CATGACAATAAATAGAGTACTACGTGA 57.054 33.333 0.00 0.00 0.00 4.35
2773 3374 8.691727 GCATGACAATAAATAGAGTACTACGTG 58.308 37.037 0.00 0.00 0.00 4.49
2774 3375 8.410912 TGCATGACAATAAATAGAGTACTACGT 58.589 33.333 0.00 0.00 0.00 3.57
2775 3376 8.797266 TGCATGACAATAAATAGAGTACTACG 57.203 34.615 0.00 0.00 0.00 3.51
2794 3395 4.405116 TGCTACTATGTGTCATGCATGA 57.595 40.909 25.42 25.42 0.00 3.07
2795 3396 5.163884 GCTATGCTACTATGTGTCATGCATG 60.164 44.000 21.07 21.07 39.07 4.06
2796 3397 4.934001 GCTATGCTACTATGTGTCATGCAT 59.066 41.667 0.00 0.00 40.50 3.96
2797 3398 4.202243 TGCTATGCTACTATGTGTCATGCA 60.202 41.667 0.00 0.00 35.34 3.96
2798 3399 4.309933 TGCTATGCTACTATGTGTCATGC 58.690 43.478 0.00 0.00 0.00 4.06
2799 3400 7.430992 AAATGCTATGCTACTATGTGTCATG 57.569 36.000 0.00 0.00 0.00 3.07
2800 3401 9.730705 AATAAATGCTATGCTACTATGTGTCAT 57.269 29.630 0.00 0.00 0.00 3.06
2809 3410 9.838339 GGGTATCATAATAAATGCTATGCTACT 57.162 33.333 0.00 0.00 31.96 2.57
2810 3411 9.613428 TGGGTATCATAATAAATGCTATGCTAC 57.387 33.333 0.00 0.00 31.13 3.58
2811 3412 9.613428 GTGGGTATCATAATAAATGCTATGCTA 57.387 33.333 0.00 0.00 0.00 3.49
2812 3413 8.331740 AGTGGGTATCATAATAAATGCTATGCT 58.668 33.333 0.00 0.00 0.00 3.79
2813 3414 8.511604 AGTGGGTATCATAATAAATGCTATGC 57.488 34.615 0.00 0.00 0.00 3.14
2814 3415 9.113838 GGAGTGGGTATCATAATAAATGCTATG 57.886 37.037 0.00 0.00 0.00 2.23
2815 3416 9.062367 AGGAGTGGGTATCATAATAAATGCTAT 57.938 33.333 0.00 0.00 0.00 2.97
2816 3417 8.449423 AGGAGTGGGTATCATAATAAATGCTA 57.551 34.615 0.00 0.00 0.00 3.49
2817 3418 7.238514 AGAGGAGTGGGTATCATAATAAATGCT 59.761 37.037 0.00 0.00 0.00 3.79
2818 3419 7.398024 AGAGGAGTGGGTATCATAATAAATGC 58.602 38.462 0.00 0.00 0.00 3.56
2819 3420 9.799106 AAAGAGGAGTGGGTATCATAATAAATG 57.201 33.333 0.00 0.00 0.00 2.32
2856 3457 9.309516 GCAATTTTGATGATGTGTCATAGAATT 57.690 29.630 0.00 0.00 44.96 2.17
2857 3458 7.924412 GGCAATTTTGATGATGTGTCATAGAAT 59.076 33.333 0.00 0.00 44.96 2.40
2858 3459 7.123098 AGGCAATTTTGATGATGTGTCATAGAA 59.877 33.333 0.00 0.00 44.96 2.10
2859 3460 6.604396 AGGCAATTTTGATGATGTGTCATAGA 59.396 34.615 0.00 0.00 44.96 1.98
2860 3461 6.802608 AGGCAATTTTGATGATGTGTCATAG 58.197 36.000 0.00 0.00 44.96 2.23
2861 3462 6.778834 AGGCAATTTTGATGATGTGTCATA 57.221 33.333 0.00 0.00 44.96 2.15
2863 3464 5.711506 ACTAGGCAATTTTGATGATGTGTCA 59.288 36.000 0.00 0.00 39.04 3.58
2864 3465 6.199937 ACTAGGCAATTTTGATGATGTGTC 57.800 37.500 0.00 0.00 0.00 3.67
2865 3466 6.594788 AACTAGGCAATTTTGATGATGTGT 57.405 33.333 0.00 0.00 0.00 3.72
2866 3467 6.183360 GCAAACTAGGCAATTTTGATGATGTG 60.183 38.462 6.88 0.00 32.91 3.21
2867 3468 5.870978 GCAAACTAGGCAATTTTGATGATGT 59.129 36.000 6.88 0.00 32.91 3.06
2868 3469 5.870433 TGCAAACTAGGCAATTTTGATGATG 59.130 36.000 6.88 0.00 38.54 3.07
2869 3470 6.040209 TGCAAACTAGGCAATTTTGATGAT 57.960 33.333 6.88 0.00 38.54 2.45
2870 3471 5.465532 TGCAAACTAGGCAATTTTGATGA 57.534 34.783 6.88 0.00 38.54 2.92
2871 3472 5.446741 GCATGCAAACTAGGCAATTTTGATG 60.447 40.000 14.21 8.08 45.60 3.07
2872 3473 4.632688 GCATGCAAACTAGGCAATTTTGAT 59.367 37.500 14.21 0.00 45.60 2.57
2873 3474 3.995705 GCATGCAAACTAGGCAATTTTGA 59.004 39.130 14.21 0.00 45.60 2.69
2874 3475 3.747010 TGCATGCAAACTAGGCAATTTTG 59.253 39.130 20.30 0.00 45.60 2.44
2875 3476 4.005487 TGCATGCAAACTAGGCAATTTT 57.995 36.364 20.30 0.00 45.60 1.82
2876 3477 3.681593 TGCATGCAAACTAGGCAATTT 57.318 38.095 20.30 0.00 45.60 1.82
2877 3478 3.196039 TCATGCATGCAAACTAGGCAATT 59.804 39.130 26.68 0.00 45.60 2.32
2878 3479 2.761767 TCATGCATGCAAACTAGGCAAT 59.238 40.909 26.68 0.00 45.60 3.56
2879 3480 2.169330 TCATGCATGCAAACTAGGCAA 58.831 42.857 26.68 0.00 45.60 4.52
2880 3481 1.836802 TCATGCATGCAAACTAGGCA 58.163 45.000 26.68 0.00 46.66 4.75
2881 3482 3.567164 AGTATCATGCATGCAAACTAGGC 59.433 43.478 26.68 11.66 0.00 3.93
2882 3483 5.106791 GCTAGTATCATGCATGCAAACTAGG 60.107 44.000 34.47 25.57 36.15 3.02
2883 3484 5.699915 AGCTAGTATCATGCATGCAAACTAG 59.300 40.000 32.55 32.55 37.27 2.57
2884 3485 5.614308 AGCTAGTATCATGCATGCAAACTA 58.386 37.500 26.68 24.27 0.00 2.24
2885 3486 4.458397 AGCTAGTATCATGCATGCAAACT 58.542 39.130 26.68 24.45 0.00 2.66
2886 3487 4.825546 AGCTAGTATCATGCATGCAAAC 57.174 40.909 26.68 19.19 0.00 2.93
2887 3488 6.232692 TCATAGCTAGTATCATGCATGCAAA 58.767 36.000 26.68 16.55 0.00 3.68
2888 3489 5.797051 TCATAGCTAGTATCATGCATGCAA 58.203 37.500 26.68 9.94 0.00 4.08
2889 3490 5.410355 TCATAGCTAGTATCATGCATGCA 57.590 39.130 25.04 25.04 0.00 3.96
2890 3491 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
2891 3492 9.676195 GTAGTATCATAGCTAGTATCATGCATG 57.324 37.037 21.07 21.07 0.00 4.06
2892 3493 8.855110 GGTAGTATCATAGCTAGTATCATGCAT 58.145 37.037 0.00 0.00 0.00 3.96
2893 3494 7.834181 TGGTAGTATCATAGCTAGTATCATGCA 59.166 37.037 0.00 0.00 0.00 3.96
2894 3495 8.226819 TGGTAGTATCATAGCTAGTATCATGC 57.773 38.462 0.00 0.00 0.00 4.06
2900 3501 9.376075 GTCGTAATGGTAGTATCATAGCTAGTA 57.624 37.037 0.00 0.00 0.00 1.82
2901 3502 7.336427 GGTCGTAATGGTAGTATCATAGCTAGT 59.664 40.741 0.00 0.00 0.00 2.57
2902 3503 7.336176 TGGTCGTAATGGTAGTATCATAGCTAG 59.664 40.741 0.00 0.00 0.00 3.42
2903 3504 7.170277 TGGTCGTAATGGTAGTATCATAGCTA 58.830 38.462 0.00 0.00 0.00 3.32
2904 3505 6.008331 TGGTCGTAATGGTAGTATCATAGCT 58.992 40.000 0.00 0.00 0.00 3.32
2905 3506 6.263516 TGGTCGTAATGGTAGTATCATAGC 57.736 41.667 0.00 0.00 0.00 2.97
2906 3507 6.323266 GCTGGTCGTAATGGTAGTATCATAG 58.677 44.000 0.00 0.00 0.00 2.23
2907 3508 5.184479 GGCTGGTCGTAATGGTAGTATCATA 59.816 44.000 0.00 0.00 0.00 2.15
2908 3509 4.021368 GGCTGGTCGTAATGGTAGTATCAT 60.021 45.833 0.00 0.00 0.00 2.45
2909 3510 3.319972 GGCTGGTCGTAATGGTAGTATCA 59.680 47.826 0.00 0.00 0.00 2.15
2910 3511 3.573110 AGGCTGGTCGTAATGGTAGTATC 59.427 47.826 0.00 0.00 0.00 2.24
2911 3512 3.321111 CAGGCTGGTCGTAATGGTAGTAT 59.679 47.826 6.61 0.00 0.00 2.12
2912 3513 2.691526 CAGGCTGGTCGTAATGGTAGTA 59.308 50.000 6.61 0.00 0.00 1.82
2913 3514 1.480954 CAGGCTGGTCGTAATGGTAGT 59.519 52.381 6.61 0.00 0.00 2.73
2914 3515 1.754803 TCAGGCTGGTCGTAATGGTAG 59.245 52.381 15.73 0.00 0.00 3.18
2915 3516 1.855295 TCAGGCTGGTCGTAATGGTA 58.145 50.000 15.73 0.00 0.00 3.25
2916 3517 0.981183 TTCAGGCTGGTCGTAATGGT 59.019 50.000 15.73 0.00 0.00 3.55
2917 3518 1.656652 CTTCAGGCTGGTCGTAATGG 58.343 55.000 15.73 0.00 0.00 3.16
2918 3519 1.009829 GCTTCAGGCTGGTCGTAATG 58.990 55.000 15.73 0.00 38.06 1.90
2919 3520 0.460284 CGCTTCAGGCTGGTCGTAAT 60.460 55.000 15.73 0.00 39.13 1.89
2920 3521 1.080093 CGCTTCAGGCTGGTCGTAA 60.080 57.895 15.73 0.00 39.13 3.18
2921 3522 2.571757 CGCTTCAGGCTGGTCGTA 59.428 61.111 15.73 0.00 39.13 3.43
2924 3525 3.426568 GTGCGCTTCAGGCTGGTC 61.427 66.667 15.73 3.17 39.13 4.02
2925 3526 4.254709 TGTGCGCTTCAGGCTGGT 62.255 61.111 15.73 0.00 39.13 4.00
2926 3527 3.429141 CTGTGCGCTTCAGGCTGG 61.429 66.667 15.73 0.00 39.13 4.85
2927 3528 4.099170 GCTGTGCGCTTCAGGCTG 62.099 66.667 25.40 8.58 39.13 4.85
2949 3550 3.380320 AGGAAGTCAAACTGGGAAAAACG 59.620 43.478 0.00 0.00 0.00 3.60
2960 3561 3.978687 TGAAGACGAGAGGAAGTCAAAC 58.021 45.455 0.00 0.00 39.67 2.93
2993 3594 3.933722 CCATGCCGGGCGAGATCT 61.934 66.667 15.40 0.00 0.00 2.75
3002 3603 1.379044 AGGAGAAAAGCCATGCCGG 60.379 57.895 0.00 0.00 38.11 6.13
3003 3604 1.379642 GGAGGAGAAAAGCCATGCCG 61.380 60.000 0.00 0.00 0.00 5.69
3010 3611 0.391793 CCGGAGTGGAGGAGAAAAGC 60.392 60.000 0.00 0.00 42.00 3.51
3047 3648 3.880846 GCAGATTTCGGCCAGGCG 61.881 66.667 5.00 7.36 0.00 5.52
3051 3652 2.031919 ACGTGCAGATTTCGGCCA 59.968 55.556 2.24 0.00 36.20 5.36
3083 3684 1.152139 GAGGGAGAGGAGGGATGGG 60.152 68.421 0.00 0.00 0.00 4.00
3109 3710 0.180642 ATGTCTCTGCAGCATCAGGG 59.819 55.000 9.47 2.51 35.90 4.45
3110 3711 1.300481 CATGTCTCTGCAGCATCAGG 58.700 55.000 9.47 5.54 34.91 3.86
3119 3720 2.512515 GGTCCGGCATGTCTCTGC 60.513 66.667 0.00 0.00 41.53 4.26
3120 3721 1.448540 GTGGTCCGGCATGTCTCTG 60.449 63.158 0.00 0.00 0.00 3.35
3121 3722 2.660064 GGTGGTCCGGCATGTCTCT 61.660 63.158 0.00 0.00 0.00 3.10
3122 3723 2.125106 GGTGGTCCGGCATGTCTC 60.125 66.667 0.00 0.00 0.00 3.36
3132 3733 2.125512 CTGCAGCTACGGTGGTCC 60.126 66.667 0.00 0.00 0.00 4.46
3133 3734 1.153745 CTCTGCAGCTACGGTGGTC 60.154 63.158 9.47 0.00 0.00 4.02
3134 3735 1.606601 TCTCTGCAGCTACGGTGGT 60.607 57.895 9.47 0.00 0.00 4.16
3135 3736 1.153745 GTCTCTGCAGCTACGGTGG 60.154 63.158 9.47 0.00 0.00 4.61
3136 3737 0.734253 GTGTCTCTGCAGCTACGGTG 60.734 60.000 9.47 0.00 0.00 4.94
3137 3738 1.587054 GTGTCTCTGCAGCTACGGT 59.413 57.895 9.47 0.00 0.00 4.83
3138 3739 1.515088 CGTGTCTCTGCAGCTACGG 60.515 63.158 9.47 2.17 0.00 4.02
3139 3740 2.155194 GCGTGTCTCTGCAGCTACG 61.155 63.158 20.00 20.00 34.02 3.51
3140 3741 1.807573 GGCGTGTCTCTGCAGCTAC 60.808 63.158 9.47 10.03 0.00 3.58
3141 3742 2.573869 GGCGTGTCTCTGCAGCTA 59.426 61.111 9.47 0.00 0.00 3.32
3142 3743 4.731612 CGGCGTGTCTCTGCAGCT 62.732 66.667 9.47 0.00 0.00 4.24
3144 3745 4.056125 TCCGGCGTGTCTCTGCAG 62.056 66.667 7.63 7.63 0.00 4.41
3145 3746 4.357947 GTCCGGCGTGTCTCTGCA 62.358 66.667 6.01 0.00 0.00 4.41
3206 3807 0.177604 CTTCTTCTGCAGCTCCGGAT 59.822 55.000 9.47 0.00 0.00 4.18
3207 3808 0.900182 TCTTCTTCTGCAGCTCCGGA 60.900 55.000 9.47 2.93 0.00 5.14
3281 3882 2.832201 GGAGCTCCATTGCAGCCC 60.832 66.667 28.43 0.00 37.63 5.19
3302 3903 2.352805 CTGGTCCTTCACAGCCCC 59.647 66.667 0.00 0.00 0.00 5.80
3314 3915 2.260247 TGCATTGAAGCAGCTGGTC 58.740 52.632 20.46 13.03 40.11 4.02
3397 3998 1.658409 GTGGAAGTTGCAACGCAGC 60.658 57.895 23.21 13.43 40.61 5.25
3401 4002 2.184167 ACGGGTGGAAGTTGCAACG 61.184 57.895 23.21 17.19 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.