Multiple sequence alignment - TraesCS5D01G550500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G550500 chr5D 100.000 2915 0 0 1 2915 556999431 557002345 0.000000e+00 5384.0
1 TraesCS5D01G550500 chr5D 91.943 422 31 3 157 576 410251870 410252290 3.240000e-164 588.0
2 TraesCS5D01G550500 chr5B 90.117 2307 133 48 672 2915 709584903 709582629 0.000000e+00 2909.0
3 TraesCS5D01G550500 chr5B 92.025 163 8 5 1 159 709586130 709585969 1.050000e-54 224.0
4 TraesCS5D01G550500 chr5B 94.444 36 2 0 604 639 582158166 582158131 4.060000e-04 56.5
5 TraesCS5D01G550500 chr4A 90.189 2222 136 35 764 2915 605644676 605646885 0.000000e+00 2820.0
6 TraesCS5D01G550500 chr4A 87.037 162 7 9 1 159 605643162 605643312 1.390000e-38 171.0
7 TraesCS5D01G550500 chr4A 92.982 57 4 0 103 159 195969851 195969795 1.860000e-12 84.2
8 TraesCS5D01G550500 chrUn 93.780 418 24 1 160 575 224682581 224682164 6.860000e-176 627.0
9 TraesCS5D01G550500 chr3D 93.602 422 24 2 157 576 587940648 587941068 6.860000e-176 627.0
10 TraesCS5D01G550500 chr3D 91.924 421 28 4 160 576 511669462 511669880 4.190000e-163 584.0
11 TraesCS5D01G550500 chr3D 97.222 36 1 0 604 639 582778837 582778872 8.720000e-06 62.1
12 TraesCS5D01G550500 chr3D 100.000 31 0 0 604 634 86334276 86334306 1.130000e-04 58.4
13 TraesCS5D01G550500 chr3D 100.000 31 0 0 603 633 389910797 389910767 1.130000e-04 58.4
14 TraesCS5D01G550500 chr3D 97.059 34 0 1 604 637 457058502 457058470 4.060000e-04 56.5
15 TraesCS5D01G550500 chr1A 93.556 419 25 1 160 576 33217084 33216666 8.870000e-175 623.0
16 TraesCS5D01G550500 chr1A 100.000 31 0 0 603 633 593649295 593649265 1.130000e-04 58.4
17 TraesCS5D01G550500 chr1A 100.000 30 0 0 604 633 290124448 290124419 4.060000e-04 56.5
18 TraesCS5D01G550500 chr1A 100.000 30 0 0 604 633 382550744 382550773 4.060000e-04 56.5
19 TraesCS5D01G550500 chr7D 92.453 424 26 5 158 577 584772621 584772200 4.160000e-168 601.0
20 TraesCS5D01G550500 chr7D 94.737 57 3 0 110 166 258222765 258222821 4.000000e-14 89.8
21 TraesCS5D01G550500 chr7D 92.500 40 2 1 604 642 5041198 5041159 4.060000e-04 56.5
22 TraesCS5D01G550500 chr2D 92.671 423 22 4 157 576 24872079 24872495 4.160000e-168 601.0
23 TraesCS5D01G550500 chr2D 91.962 423 30 2 157 577 556347384 556347804 9.000000e-165 590.0
24 TraesCS5D01G550500 chr2B 92.143 420 27 4 160 577 742698166 742698581 3.240000e-164 588.0
25 TraesCS5D01G550500 chr2B 97.959 49 1 0 111 159 164904158 164904206 5.180000e-13 86.1
26 TraesCS5D01G550500 chr4B 86.735 98 10 3 10 107 17358127 17358221 3.970000e-19 106.0
27 TraesCS5D01G550500 chr7A 98.000 50 1 0 110 159 279180090 279180139 1.440000e-13 87.9
28 TraesCS5D01G550500 chr1D 97.959 49 1 0 111 159 338872383 338872431 5.180000e-13 86.1
29 TraesCS5D01G550500 chr1D 90.323 62 4 2 95 155 189655452 189655512 2.410000e-11 80.5
30 TraesCS5D01G550500 chr1D 91.379 58 3 2 577 633 320189590 320189646 8.660000e-11 78.7
31 TraesCS5D01G550500 chr1D 100.000 31 0 0 604 634 243461221 243461251 1.130000e-04 58.4
32 TraesCS5D01G550500 chr1D 100.000 30 0 0 604 633 223162302 223162273 4.060000e-04 56.5
33 TraesCS5D01G550500 chr1D 100.000 30 0 0 608 637 346679622 346679593 4.060000e-04 56.5
34 TraesCS5D01G550500 chr1B 91.935 62 3 2 95 155 263552307 263552367 5.180000e-13 86.1
35 TraesCS5D01G550500 chr3B 88.235 68 4 4 89 155 704578400 704578464 8.660000e-11 78.7
36 TraesCS5D01G550500 chr5A 90.385 52 5 0 583 634 291594533 291594482 5.210000e-08 69.4
37 TraesCS5D01G550500 chr5A 100.000 33 0 0 601 633 598812887 598812855 8.720000e-06 62.1
38 TraesCS5D01G550500 chr7B 97.143 35 1 0 604 638 113163386 113163420 3.140000e-05 60.2
39 TraesCS5D01G550500 chr6D 97.143 35 1 0 599 633 13994263 13994229 3.140000e-05 60.2
40 TraesCS5D01G550500 chr6D 96.875 32 0 1 604 634 305174028 305173997 5.000000e-03 52.8
41 TraesCS5D01G550500 chr6D 96.875 32 0 1 604 634 318346667 318346636 5.000000e-03 52.8
42 TraesCS5D01G550500 chr6D 100.000 28 0 0 608 635 340997449 340997476 5.000000e-03 52.8
43 TraesCS5D01G550500 chr6A 100.000 31 0 0 603 633 552171489 552171459 1.130000e-04 58.4
44 TraesCS5D01G550500 chr4D 100.000 31 0 0 604 634 320026997 320026967 1.130000e-04 58.4
45 TraesCS5D01G550500 chr4D 96.875 32 0 1 604 634 211051563 211051594 5.000000e-03 52.8
46 TraesCS5D01G550500 chr3A 97.143 35 0 1 604 638 131076569 131076602 1.130000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G550500 chr5D 556999431 557002345 2914 False 5384.0 5384 100.000 1 2915 1 chr5D.!!$F2 2914
1 TraesCS5D01G550500 chr5B 709582629 709586130 3501 True 1566.5 2909 91.071 1 2915 2 chr5B.!!$R2 2914
2 TraesCS5D01G550500 chr4A 605643162 605646885 3723 False 1495.5 2820 88.613 1 2915 2 chr4A.!!$F1 2914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 2087 0.030909 ACCACCCGACCCATACCATA 60.031 55.0 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 3723 0.382515 GGACGACTGGGAGAATCTCG 59.617 60.0 3.96 0.0 39.79 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.760660 CATTTTTACTAGTAGTTGATCTGTTGC 57.239 33.333 8.40 0.00 0.00 4.17
120 121 8.148351 TCATTGACTAATAATTTACTCCCTCCG 58.852 37.037 0.00 0.00 0.00 4.63
159 163 9.935241 AGATGTTATTACAGCCAATATACTCAG 57.065 33.333 0.00 0.00 41.57 3.35
160 164 9.929180 GATGTTATTACAGCCAATATACTCAGA 57.071 33.333 0.00 0.00 37.77 3.27
165 169 8.668510 ATTACAGCCAATATACTCAGAAACTG 57.331 34.615 0.00 0.00 0.00 3.16
166 170 4.878397 ACAGCCAATATACTCAGAAACTGC 59.122 41.667 0.00 0.00 0.00 4.40
167 171 4.274459 CAGCCAATATACTCAGAAACTGCC 59.726 45.833 0.00 0.00 0.00 4.85
168 172 4.164988 AGCCAATATACTCAGAAACTGCCT 59.835 41.667 0.00 0.00 0.00 4.75
169 173 4.884164 GCCAATATACTCAGAAACTGCCTT 59.116 41.667 0.00 0.00 0.00 4.35
170 174 5.358160 GCCAATATACTCAGAAACTGCCTTT 59.642 40.000 0.00 0.00 0.00 3.11
171 175 6.678900 GCCAATATACTCAGAAACTGCCTTTG 60.679 42.308 0.00 0.00 0.00 2.77
172 176 6.183360 CCAATATACTCAGAAACTGCCTTTGG 60.183 42.308 0.00 0.00 0.00 3.28
173 177 2.736670 ACTCAGAAACTGCCTTTGGT 57.263 45.000 0.00 0.00 0.00 3.67
174 178 2.301346 ACTCAGAAACTGCCTTTGGTG 58.699 47.619 0.00 0.00 0.00 4.17
175 179 2.092429 ACTCAGAAACTGCCTTTGGTGA 60.092 45.455 0.00 0.00 0.00 4.02
176 180 2.291741 CTCAGAAACTGCCTTTGGTGAC 59.708 50.000 0.00 0.00 0.00 3.67
177 181 1.338020 CAGAAACTGCCTTTGGTGACC 59.662 52.381 0.00 0.00 0.00 4.02
178 182 0.310854 GAAACTGCCTTTGGTGACCG 59.689 55.000 0.00 0.00 0.00 4.79
179 183 0.106918 AAACTGCCTTTGGTGACCGA 60.107 50.000 0.00 0.00 0.00 4.69
180 184 0.535102 AACTGCCTTTGGTGACCGAG 60.535 55.000 0.00 0.00 0.00 4.63
181 185 2.281484 TGCCTTTGGTGACCGAGC 60.281 61.111 0.00 0.00 0.00 5.03
182 186 2.032681 GCCTTTGGTGACCGAGCT 59.967 61.111 0.00 0.00 0.00 4.09
183 187 2.035442 GCCTTTGGTGACCGAGCTC 61.035 63.158 2.73 2.73 0.00 4.09
184 188 1.371183 CCTTTGGTGACCGAGCTCA 59.629 57.895 15.40 0.00 0.00 4.26
185 189 0.951040 CCTTTGGTGACCGAGCTCAC 60.951 60.000 15.40 4.81 40.02 3.51
186 190 0.034059 CTTTGGTGACCGAGCTCACT 59.966 55.000 15.40 0.00 40.50 3.41
187 191 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66
188 192 2.099652 TTGGTGACCGAGCTCACTGG 62.100 60.000 15.40 9.60 40.50 4.00
189 193 2.276116 GGTGACCGAGCTCACTGGA 61.276 63.158 15.40 0.00 40.50 3.86
190 194 1.214062 GTGACCGAGCTCACTGGAG 59.786 63.158 15.40 0.00 44.33 3.86
191 195 1.979155 TGACCGAGCTCACTGGAGG 60.979 63.158 15.40 8.04 41.67 4.30
192 196 3.363844 GACCGAGCTCACTGGAGGC 62.364 68.421 15.40 0.00 41.67 4.70
193 197 4.154347 CCGAGCTCACTGGAGGCC 62.154 72.222 15.40 0.00 41.67 5.19
194 198 3.073735 CGAGCTCACTGGAGGCCT 61.074 66.667 15.40 3.86 41.67 5.19
195 199 2.654079 CGAGCTCACTGGAGGCCTT 61.654 63.158 15.40 0.00 41.67 4.35
196 200 1.220477 GAGCTCACTGGAGGCCTTC 59.780 63.158 6.77 4.87 41.67 3.46
197 201 1.537397 AGCTCACTGGAGGCCTTCA 60.537 57.895 14.76 14.76 41.67 3.02
198 202 1.078567 GCTCACTGGAGGCCTTCAG 60.079 63.158 35.71 35.71 41.67 3.02
199 203 1.548357 GCTCACTGGAGGCCTTCAGA 61.548 60.000 42.24 23.44 41.67 3.27
200 204 1.202330 CTCACTGGAGGCCTTCAGAT 58.798 55.000 42.24 25.46 37.51 2.90
201 205 1.558756 CTCACTGGAGGCCTTCAGATT 59.441 52.381 42.24 22.29 37.51 2.40
202 206 1.556911 TCACTGGAGGCCTTCAGATTC 59.443 52.381 42.24 12.85 35.20 2.52
203 207 1.280133 CACTGGAGGCCTTCAGATTCA 59.720 52.381 42.24 8.24 35.20 2.57
204 208 1.988107 ACTGGAGGCCTTCAGATTCAA 59.012 47.619 42.24 6.42 35.20 2.69
205 209 2.376518 ACTGGAGGCCTTCAGATTCAAA 59.623 45.455 42.24 5.60 35.20 2.69
206 210 3.181429 ACTGGAGGCCTTCAGATTCAAAA 60.181 43.478 42.24 4.79 35.20 2.44
207 211 4.021916 CTGGAGGCCTTCAGATTCAAAAT 58.978 43.478 34.69 0.00 33.11 1.82
208 212 4.419282 TGGAGGCCTTCAGATTCAAAATT 58.581 39.130 10.69 0.00 0.00 1.82
209 213 4.463891 TGGAGGCCTTCAGATTCAAAATTC 59.536 41.667 10.69 0.00 0.00 2.17
210 214 4.463891 GGAGGCCTTCAGATTCAAAATTCA 59.536 41.667 6.77 0.00 0.00 2.57
211 215 5.047092 GGAGGCCTTCAGATTCAAAATTCAA 60.047 40.000 6.77 0.00 0.00 2.69
212 216 6.423776 AGGCCTTCAGATTCAAAATTCAAA 57.576 33.333 0.00 0.00 0.00 2.69
213 217 7.012661 AGGCCTTCAGATTCAAAATTCAAAT 57.987 32.000 0.00 0.00 0.00 2.32
214 218 7.455891 AGGCCTTCAGATTCAAAATTCAAATT 58.544 30.769 0.00 0.00 0.00 1.82
215 219 7.940688 AGGCCTTCAGATTCAAAATTCAAATTT 59.059 29.630 0.00 0.00 40.15 1.82
216 220 8.232513 GGCCTTCAGATTCAAAATTCAAATTTC 58.767 33.333 0.00 0.00 37.62 2.17
217 221 8.776470 GCCTTCAGATTCAAAATTCAAATTTCA 58.224 29.630 1.43 0.00 37.62 2.69
281 285 9.632638 AAAAAGTACAGATATACATGAAGGCAT 57.367 29.630 0.00 0.00 34.29 4.40
284 288 9.712305 AAGTACAGATATACATGAAGGCATAAC 57.288 33.333 0.00 0.00 32.27 1.89
285 289 8.870116 AGTACAGATATACATGAAGGCATAACA 58.130 33.333 0.00 0.00 32.27 2.41
286 290 7.969536 ACAGATATACATGAAGGCATAACAC 57.030 36.000 0.00 0.00 32.27 3.32
287 291 7.508687 ACAGATATACATGAAGGCATAACACA 58.491 34.615 0.00 0.00 32.27 3.72
288 292 7.442364 ACAGATATACATGAAGGCATAACACAC 59.558 37.037 0.00 0.00 32.27 3.82
289 293 7.442062 CAGATATACATGAAGGCATAACACACA 59.558 37.037 0.00 0.00 32.27 3.72
290 294 8.159447 AGATATACATGAAGGCATAACACACAT 58.841 33.333 0.00 0.00 32.27 3.21
291 295 4.707030 ACATGAAGGCATAACACACATG 57.293 40.909 0.00 0.00 39.27 3.21
292 296 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
293 297 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
294 298 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
295 299 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
309 313 4.685628 CACATGTGTGTAAATTTTCAGGGC 59.314 41.667 18.03 0.00 40.96 5.19
310 314 4.343526 ACATGTGTGTAAATTTTCAGGGCA 59.656 37.500 0.00 0.00 36.63 5.36
311 315 5.163364 ACATGTGTGTAAATTTTCAGGGCAA 60.163 36.000 0.00 0.00 36.63 4.52
312 316 5.344743 TGTGTGTAAATTTTCAGGGCAAA 57.655 34.783 0.00 0.00 0.00 3.68
313 317 5.734720 TGTGTGTAAATTTTCAGGGCAAAA 58.265 33.333 0.00 0.00 0.00 2.44
314 318 6.352516 TGTGTGTAAATTTTCAGGGCAAAAT 58.647 32.000 0.00 0.00 37.53 1.82
315 319 7.500992 TGTGTGTAAATTTTCAGGGCAAAATA 58.499 30.769 0.00 0.00 35.35 1.40
316 320 7.439655 TGTGTGTAAATTTTCAGGGCAAAATAC 59.560 33.333 0.00 0.00 35.35 1.89
317 321 6.642950 TGTGTAAATTTTCAGGGCAAAATACG 59.357 34.615 0.00 0.00 35.35 3.06
318 322 6.643360 GTGTAAATTTTCAGGGCAAAATACGT 59.357 34.615 0.00 0.00 35.35 3.57
319 323 7.170151 GTGTAAATTTTCAGGGCAAAATACGTT 59.830 33.333 0.00 0.00 35.35 3.99
320 324 6.538189 AAATTTTCAGGGCAAAATACGTTG 57.462 33.333 0.00 0.00 35.35 4.10
321 325 4.920640 TTTTCAGGGCAAAATACGTTGA 57.079 36.364 0.00 0.00 0.00 3.18
322 326 5.461032 TTTTCAGGGCAAAATACGTTGAT 57.539 34.783 0.00 0.00 0.00 2.57
323 327 6.576662 TTTTCAGGGCAAAATACGTTGATA 57.423 33.333 0.00 0.00 0.00 2.15
324 328 6.767524 TTTCAGGGCAAAATACGTTGATAT 57.232 33.333 0.00 0.00 0.00 1.63
325 329 5.749596 TCAGGGCAAAATACGTTGATATG 57.250 39.130 0.00 0.00 0.00 1.78
326 330 5.432645 TCAGGGCAAAATACGTTGATATGA 58.567 37.500 0.00 0.00 0.00 2.15
327 331 5.527214 TCAGGGCAAAATACGTTGATATGAG 59.473 40.000 0.00 0.00 0.00 2.90
328 332 4.821805 AGGGCAAAATACGTTGATATGAGG 59.178 41.667 0.00 0.00 0.00 3.86
329 333 4.023193 GGGCAAAATACGTTGATATGAGGG 60.023 45.833 0.00 0.00 0.00 4.30
330 334 4.537015 GCAAAATACGTTGATATGAGGGC 58.463 43.478 0.00 0.00 0.00 5.19
331 335 4.275936 GCAAAATACGTTGATATGAGGGCT 59.724 41.667 0.00 0.00 0.00 5.19
332 336 5.751680 CAAAATACGTTGATATGAGGGCTG 58.248 41.667 0.00 0.00 0.00 4.85
333 337 4.689612 AATACGTTGATATGAGGGCTGT 57.310 40.909 0.00 0.00 0.00 4.40
334 338 2.315925 ACGTTGATATGAGGGCTGTG 57.684 50.000 0.00 0.00 0.00 3.66
335 339 0.940126 CGTTGATATGAGGGCTGTGC 59.060 55.000 0.00 0.00 0.00 4.57
336 340 1.743431 CGTTGATATGAGGGCTGTGCA 60.743 52.381 0.00 0.00 0.00 4.57
337 341 2.368439 GTTGATATGAGGGCTGTGCAA 58.632 47.619 0.00 0.00 0.00 4.08
338 342 2.754552 GTTGATATGAGGGCTGTGCAAA 59.245 45.455 0.00 0.00 0.00 3.68
339 343 3.084536 TGATATGAGGGCTGTGCAAAA 57.915 42.857 0.00 0.00 0.00 2.44
340 344 3.429492 TGATATGAGGGCTGTGCAAAAA 58.571 40.909 0.00 0.00 0.00 1.94
364 368 9.487442 AAAAGATAAATCTGGGGCTATTTAACA 57.513 29.630 0.00 0.00 37.19 2.41
365 369 8.465273 AAGATAAATCTGGGGCTATTTAACAC 57.535 34.615 0.00 0.00 37.19 3.32
366 370 7.582719 AGATAAATCTGGGGCTATTTAACACA 58.417 34.615 0.00 0.00 35.42 3.72
367 371 8.227507 AGATAAATCTGGGGCTATTTAACACAT 58.772 33.333 0.00 0.00 35.42 3.21
368 372 6.469782 AAATCTGGGGCTATTTAACACATG 57.530 37.500 0.00 0.00 0.00 3.21
369 373 4.853468 TCTGGGGCTATTTAACACATGA 57.147 40.909 0.00 0.00 0.00 3.07
370 374 5.387113 TCTGGGGCTATTTAACACATGAT 57.613 39.130 0.00 0.00 0.00 2.45
371 375 6.508030 TCTGGGGCTATTTAACACATGATA 57.492 37.500 0.00 0.00 0.00 2.15
372 376 6.296026 TCTGGGGCTATTTAACACATGATAC 58.704 40.000 0.00 0.00 0.00 2.24
373 377 6.101150 TCTGGGGCTATTTAACACATGATACT 59.899 38.462 0.00 0.00 0.00 2.12
374 378 7.291416 TCTGGGGCTATTTAACACATGATACTA 59.709 37.037 0.00 0.00 0.00 1.82
375 379 7.984475 TGGGGCTATTTAACACATGATACTAT 58.016 34.615 0.00 0.00 0.00 2.12
376 380 8.444783 TGGGGCTATTTAACACATGATACTATT 58.555 33.333 0.00 0.00 0.00 1.73
377 381 8.947115 GGGGCTATTTAACACATGATACTATTC 58.053 37.037 0.00 0.00 0.00 1.75
378 382 9.502091 GGGCTATTTAACACATGATACTATTCA 57.498 33.333 0.00 0.00 0.00 2.57
384 388 9.778741 TTTAACACATGATACTATTCATCCTCC 57.221 33.333 0.00 0.00 34.09 4.30
385 389 6.365970 ACACATGATACTATTCATCCTCCC 57.634 41.667 0.00 0.00 34.09 4.30
386 390 5.846164 ACACATGATACTATTCATCCTCCCA 59.154 40.000 0.00 0.00 34.09 4.37
387 391 6.013898 ACACATGATACTATTCATCCTCCCAG 60.014 42.308 0.00 0.00 34.09 4.45
388 392 5.486775 ACATGATACTATTCATCCTCCCAGG 59.513 44.000 0.00 0.00 34.09 4.45
389 393 3.840666 TGATACTATTCATCCTCCCAGGC 59.159 47.826 0.00 0.00 34.61 4.85
390 394 1.439543 ACTATTCATCCTCCCAGGCC 58.560 55.000 0.00 0.00 34.61 5.19
391 395 1.345422 ACTATTCATCCTCCCAGGCCA 60.345 52.381 5.01 0.00 34.61 5.36
392 396 1.991070 CTATTCATCCTCCCAGGCCAT 59.009 52.381 5.01 0.00 34.61 4.40
393 397 0.481567 ATTCATCCTCCCAGGCCATG 59.518 55.000 5.01 0.00 34.61 3.66
394 398 0.624206 TTCATCCTCCCAGGCCATGA 60.624 55.000 5.01 0.00 34.61 3.07
395 399 0.624206 TCATCCTCCCAGGCCATGAA 60.624 55.000 5.01 0.00 34.61 2.57
396 400 0.481567 CATCCTCCCAGGCCATGAAT 59.518 55.000 5.01 0.00 34.61 2.57
397 401 1.133262 CATCCTCCCAGGCCATGAATT 60.133 52.381 5.01 0.00 34.61 2.17
398 402 1.009997 TCCTCCCAGGCCATGAATTT 58.990 50.000 5.01 0.00 34.61 1.82
399 403 2.213310 TCCTCCCAGGCCATGAATTTA 58.787 47.619 5.01 0.00 34.61 1.40
400 404 2.791179 TCCTCCCAGGCCATGAATTTAT 59.209 45.455 5.01 0.00 34.61 1.40
401 405 3.160269 CCTCCCAGGCCATGAATTTATC 58.840 50.000 5.01 0.00 0.00 1.75
402 406 3.181425 CCTCCCAGGCCATGAATTTATCT 60.181 47.826 5.01 0.00 0.00 1.98
403 407 4.477249 CTCCCAGGCCATGAATTTATCTT 58.523 43.478 5.01 0.00 0.00 2.40
404 408 4.882559 TCCCAGGCCATGAATTTATCTTT 58.117 39.130 5.01 0.00 0.00 2.52
405 409 5.279685 TCCCAGGCCATGAATTTATCTTTT 58.720 37.500 5.01 0.00 0.00 2.27
406 410 5.725822 TCCCAGGCCATGAATTTATCTTTTT 59.274 36.000 5.01 0.00 0.00 1.94
423 427 2.704725 TTTTGCAGAGGTCGCATTTC 57.295 45.000 0.00 0.00 39.58 2.17
424 428 1.603456 TTTGCAGAGGTCGCATTTCA 58.397 45.000 0.00 0.00 39.58 2.69
425 429 1.603456 TTGCAGAGGTCGCATTTCAA 58.397 45.000 0.00 0.00 39.58 2.69
426 430 0.874390 TGCAGAGGTCGCATTTCAAC 59.126 50.000 0.00 0.00 33.55 3.18
427 431 0.179215 GCAGAGGTCGCATTTCAACG 60.179 55.000 0.00 0.00 0.00 4.10
428 432 1.148310 CAGAGGTCGCATTTCAACGT 58.852 50.000 0.00 0.00 0.00 3.99
429 433 2.333926 CAGAGGTCGCATTTCAACGTA 58.666 47.619 0.00 0.00 0.00 3.57
430 434 2.930040 CAGAGGTCGCATTTCAACGTAT 59.070 45.455 0.00 0.00 0.00 3.06
431 435 3.370978 CAGAGGTCGCATTTCAACGTATT 59.629 43.478 0.00 0.00 0.00 1.89
432 436 4.000988 AGAGGTCGCATTTCAACGTATTT 58.999 39.130 0.00 0.00 0.00 1.40
433 437 4.092968 AGAGGTCGCATTTCAACGTATTTC 59.907 41.667 0.00 0.00 0.00 2.17
434 438 3.749088 AGGTCGCATTTCAACGTATTTCA 59.251 39.130 0.00 0.00 0.00 2.69
435 439 4.394920 AGGTCGCATTTCAACGTATTTCAT 59.605 37.500 0.00 0.00 0.00 2.57
436 440 4.728608 GGTCGCATTTCAACGTATTTCATC 59.271 41.667 0.00 0.00 0.00 2.92
437 441 5.320723 GTCGCATTTCAACGTATTTCATCA 58.679 37.500 0.00 0.00 0.00 3.07
438 442 5.965334 GTCGCATTTCAACGTATTTCATCAT 59.035 36.000 0.00 0.00 0.00 2.45
439 443 5.964751 TCGCATTTCAACGTATTTCATCATG 59.035 36.000 0.00 0.00 0.00 3.07
440 444 5.964751 CGCATTTCAACGTATTTCATCATGA 59.035 36.000 0.00 0.00 0.00 3.07
441 445 6.468637 CGCATTTCAACGTATTTCATCATGAA 59.531 34.615 0.00 0.00 34.03 2.57
456 460 9.761504 TTTCATCATGAAATTTTACACACATGT 57.238 25.926 8.85 0.00 41.02 3.21
457 461 9.194271 TTCATCATGAAATTTTACACACATGTG 57.806 29.630 24.25 24.25 41.50 3.21
461 465 6.227298 TGAAATTTTACACACATGTGGGTT 57.773 33.333 36.81 19.39 46.70 4.11
462 466 7.348080 TGAAATTTTACACACATGTGGGTTA 57.652 32.000 36.81 26.47 46.70 2.85
463 467 7.203910 TGAAATTTTACACACATGTGGGTTAC 58.796 34.615 36.81 16.85 46.70 2.50
464 468 6.716934 AATTTTACACACATGTGGGTTACA 57.283 33.333 36.81 22.52 46.70 2.41
465 469 6.909550 ATTTTACACACATGTGGGTTACAT 57.090 33.333 36.81 23.70 46.70 2.29
466 470 5.950758 TTTACACACATGTGGGTTACATC 57.049 39.130 36.81 0.00 46.70 3.06
467 471 2.790433 ACACACATGTGGGTTACATCC 58.210 47.619 28.06 0.00 46.70 3.51
468 472 2.375174 ACACACATGTGGGTTACATCCT 59.625 45.455 28.06 2.52 46.70 3.24
469 473 3.181434 ACACACATGTGGGTTACATCCTT 60.181 43.478 28.06 1.71 46.70 3.36
470 474 4.042311 ACACACATGTGGGTTACATCCTTA 59.958 41.667 28.06 0.00 46.70 2.69
471 475 6.033707 ACACACATGTGGGTTACATCCTTAC 61.034 44.000 28.06 0.00 46.70 2.34
472 476 8.383022 ACACACATGTGGGTTACATCCTTACA 62.383 42.308 28.06 0.00 46.70 2.41
473 477 9.598320 ACACACATGTGGGTTACATCCTTACAT 62.598 40.741 28.06 0.00 46.70 2.29
477 481 5.736813 TGTGGGTTACATCCTTACATACAC 58.263 41.667 0.00 0.00 33.42 2.90
478 482 4.807304 GTGGGTTACATCCTTACATACACG 59.193 45.833 0.00 0.00 0.00 4.49
479 483 3.805971 GGGTTACATCCTTACATACACGC 59.194 47.826 0.00 0.00 0.00 5.34
480 484 4.435425 GGTTACATCCTTACATACACGCA 58.565 43.478 0.00 0.00 0.00 5.24
481 485 5.054477 GGTTACATCCTTACATACACGCAT 58.946 41.667 0.00 0.00 0.00 4.73
482 486 6.218019 GGTTACATCCTTACATACACGCATA 58.782 40.000 0.00 0.00 0.00 3.14
483 487 6.872020 GGTTACATCCTTACATACACGCATAT 59.128 38.462 0.00 0.00 0.00 1.78
484 488 7.386848 GGTTACATCCTTACATACACGCATATT 59.613 37.037 0.00 0.00 0.00 1.28
485 489 8.770828 GTTACATCCTTACATACACGCATATTT 58.229 33.333 0.00 0.00 0.00 1.40
486 490 7.801716 ACATCCTTACATACACGCATATTTT 57.198 32.000 0.00 0.00 0.00 1.82
487 491 8.220755 ACATCCTTACATACACGCATATTTTT 57.779 30.769 0.00 0.00 0.00 1.94
542 546 8.815141 ATTTGAATTTTGCAAAAATAAAGGCC 57.185 26.923 27.10 7.77 38.57 5.19
543 547 7.579761 TTGAATTTTGCAAAAATAAAGGCCT 57.420 28.000 27.10 0.00 0.00 5.19
544 548 7.200778 TGAATTTTGCAAAAATAAAGGCCTC 57.799 32.000 27.10 12.73 0.00 4.70
545 549 6.206438 TGAATTTTGCAAAAATAAAGGCCTCC 59.794 34.615 27.10 5.76 0.00 4.30
546 550 4.696479 TTTGCAAAAATAAAGGCCTCCA 57.304 36.364 10.02 0.00 0.00 3.86
547 551 4.906747 TTGCAAAAATAAAGGCCTCCAT 57.093 36.364 5.23 0.00 0.00 3.41
548 552 4.205065 TGCAAAAATAAAGGCCTCCATG 57.795 40.909 5.23 0.00 0.00 3.66
549 553 3.055240 TGCAAAAATAAAGGCCTCCATGG 60.055 43.478 5.23 4.97 39.35 3.66
550 554 3.197549 GCAAAAATAAAGGCCTCCATGGA 59.802 43.478 15.27 15.27 38.35 3.41
551 555 4.141642 GCAAAAATAAAGGCCTCCATGGAT 60.142 41.667 16.63 1.02 38.35 3.41
552 556 5.604565 CAAAAATAAAGGCCTCCATGGATC 58.395 41.667 16.63 10.21 38.35 3.36
553 557 4.821532 AAATAAAGGCCTCCATGGATCT 57.178 40.909 16.63 10.56 38.35 2.75
554 558 4.379302 AATAAAGGCCTCCATGGATCTC 57.621 45.455 16.63 7.55 38.35 2.75
555 559 0.471617 AAAGGCCTCCATGGATCTCG 59.528 55.000 16.63 2.96 38.35 4.04
556 560 1.414061 AAGGCCTCCATGGATCTCGG 61.414 60.000 16.63 14.19 38.35 4.63
557 561 2.031768 GCCTCCATGGATCTCGGC 59.968 66.667 22.86 22.86 38.35 5.54
558 562 2.746359 CCTCCATGGATCTCGGCC 59.254 66.667 16.63 0.00 38.35 6.13
559 563 1.840650 CCTCCATGGATCTCGGCCT 60.841 63.158 16.63 0.00 38.35 5.19
560 564 1.670590 CTCCATGGATCTCGGCCTC 59.329 63.158 16.63 0.00 0.00 4.70
561 565 1.825281 CTCCATGGATCTCGGCCTCC 61.825 65.000 16.63 0.46 0.00 4.30
562 566 2.142761 CCATGGATCTCGGCCTCCA 61.143 63.158 13.47 13.47 45.27 3.86
563 567 1.699054 CCATGGATCTCGGCCTCCAA 61.699 60.000 14.93 0.23 44.41 3.53
564 568 0.181114 CATGGATCTCGGCCTCCAAA 59.819 55.000 14.93 0.00 44.41 3.28
565 569 0.918983 ATGGATCTCGGCCTCCAAAA 59.081 50.000 14.93 0.00 44.41 2.44
566 570 0.035439 TGGATCTCGGCCTCCAAAAC 60.035 55.000 8.96 0.00 38.59 2.43
567 571 1.090052 GGATCTCGGCCTCCAAAACG 61.090 60.000 0.00 0.00 0.00 3.60
568 572 1.078426 ATCTCGGCCTCCAAAACGG 60.078 57.895 0.00 0.00 0.00 4.44
569 573 3.431725 CTCGGCCTCCAAAACGGC 61.432 66.667 0.00 0.00 45.55 5.68
573 577 4.889427 GCCTCCAAAACGGCATTC 57.111 55.556 0.00 0.00 45.59 2.67
574 578 2.267045 GCCTCCAAAACGGCATTCT 58.733 52.632 0.00 0.00 45.59 2.40
575 579 0.171231 GCCTCCAAAACGGCATTCTC 59.829 55.000 0.00 0.00 45.59 2.87
589 593 3.997021 GGCATTCTCCCAATATACTCACG 59.003 47.826 0.00 0.00 0.00 4.35
595 599 7.591421 TTCTCCCAATATACTCACGTATTGA 57.409 36.000 7.82 0.00 39.50 2.57
633 668 0.613853 TTGTGGGACGGAGGGAGTAG 60.614 60.000 0.00 0.00 0.00 2.57
656 691 9.388506 GTAGCTTTGACTGCCATCATATATATT 57.611 33.333 0.00 0.00 0.00 1.28
658 693 9.610705 AGCTTTGACTGCCATCATATATATTAG 57.389 33.333 0.00 0.00 0.00 1.73
664 1798 9.474920 GACTGCCATCATATATATTAGAAGAGC 57.525 37.037 0.00 0.00 0.00 4.09
683 1817 2.838202 AGCTTTCAAGGATTCGGAGGTA 59.162 45.455 0.00 0.00 0.00 3.08
692 1826 2.640184 GATTCGGAGGTAAGGGTTTGG 58.360 52.381 0.00 0.00 0.00 3.28
695 1829 2.618794 TCGGAGGTAAGGGTTTGGTTA 58.381 47.619 0.00 0.00 0.00 2.85
726 1860 5.348451 GGCGTACGAGTTGAAGGTTTATTTA 59.652 40.000 21.65 0.00 0.00 1.40
771 1974 4.579127 GGTCAGTGTGGCCAAACT 57.421 55.556 23.80 23.80 42.98 2.66
783 1986 2.284112 CAAACTGGCTGGCCCCAT 60.284 61.111 9.28 0.00 33.64 4.00
785 1988 2.855770 AAACTGGCTGGCCCCATCA 61.856 57.895 9.28 0.00 33.64 3.07
828 2036 1.745115 CCATCCACGTGAACCGCAT 60.745 57.895 19.30 0.00 41.42 4.73
864 2075 4.966787 CCAACCCACCACCACCCG 62.967 72.222 0.00 0.00 0.00 5.28
865 2076 3.879885 CAACCCACCACCACCCGA 61.880 66.667 0.00 0.00 0.00 5.14
866 2077 3.881104 AACCCACCACCACCCGAC 61.881 66.667 0.00 0.00 0.00 4.79
872 2083 2.295602 ACCACCACCCGACCCATAC 61.296 63.158 0.00 0.00 0.00 2.39
873 2084 2.587889 CACCACCCGACCCATACC 59.412 66.667 0.00 0.00 0.00 2.73
874 2085 2.123180 ACCACCCGACCCATACCA 59.877 61.111 0.00 0.00 0.00 3.25
875 2086 1.307517 ACCACCCGACCCATACCAT 60.308 57.895 0.00 0.00 0.00 3.55
876 2087 0.030909 ACCACCCGACCCATACCATA 60.031 55.000 0.00 0.00 0.00 2.74
877 2088 0.395312 CCACCCGACCCATACCATAC 59.605 60.000 0.00 0.00 0.00 2.39
878 2089 1.420430 CACCCGACCCATACCATACT 58.580 55.000 0.00 0.00 0.00 2.12
879 2090 2.600790 CACCCGACCCATACCATACTA 58.399 52.381 0.00 0.00 0.00 1.82
880 2091 2.298163 CACCCGACCCATACCATACTAC 59.702 54.545 0.00 0.00 0.00 2.73
881 2092 1.897802 CCCGACCCATACCATACTACC 59.102 57.143 0.00 0.00 0.00 3.18
882 2093 1.897802 CCGACCCATACCATACTACCC 59.102 57.143 0.00 0.00 0.00 3.69
883 2094 1.897802 CGACCCATACCATACTACCCC 59.102 57.143 0.00 0.00 0.00 4.95
884 2095 2.263545 GACCCATACCATACTACCCCC 58.736 57.143 0.00 0.00 0.00 5.40
983 2212 1.330655 ATCCAGATCTGAACCGCCGT 61.331 55.000 24.62 0.00 0.00 5.68
984 2213 0.681887 TCCAGATCTGAACCGCCGTA 60.682 55.000 24.62 0.00 0.00 4.02
1371 2640 1.022903 ACCAGGAGGAGGAGGAAGAT 58.977 55.000 0.00 0.00 38.69 2.40
1393 2662 2.985957 AGATGAAGAAGAGCAGGAGC 57.014 50.000 0.00 0.00 42.56 4.70
1398 2667 0.903942 AAGAAGAGCAGGAGCAGGAG 59.096 55.000 0.00 0.00 45.49 3.69
1399 2668 0.977108 AGAAGAGCAGGAGCAGGAGG 60.977 60.000 0.00 0.00 45.49 4.30
1400 2669 0.975040 GAAGAGCAGGAGCAGGAGGA 60.975 60.000 0.00 0.00 45.49 3.71
1401 2670 0.546267 AAGAGCAGGAGCAGGAGGAA 60.546 55.000 0.00 0.00 45.49 3.36
1402 2671 0.977108 AGAGCAGGAGCAGGAGGAAG 60.977 60.000 0.00 0.00 45.49 3.46
1403 2672 0.975040 GAGCAGGAGCAGGAGGAAGA 60.975 60.000 0.00 0.00 45.49 2.87
1404 2673 0.977108 AGCAGGAGCAGGAGGAAGAG 60.977 60.000 0.00 0.00 45.49 2.85
1408 2677 1.334384 GGAGCAGGAGGAAGAGGACC 61.334 65.000 0.00 0.00 0.00 4.46
1410 2679 0.907230 AGCAGGAGGAAGAGGACCAC 60.907 60.000 0.00 0.00 0.00 4.16
1413 2682 0.612453 AGGAGGAAGAGGACCACGAC 60.612 60.000 0.00 0.00 0.00 4.34
1414 2683 1.507174 GAGGAAGAGGACCACGACG 59.493 63.158 0.00 0.00 0.00 5.12
1418 2687 1.935327 GAAGAGGACCACGACGAGGG 61.935 65.000 15.92 11.91 0.00 4.30
1446 2718 1.481772 CAAGAAGAGGAGGAGGAGCAG 59.518 57.143 0.00 0.00 0.00 4.24
1466 2738 2.811317 GCTCGTCGCCAGGAACAG 60.811 66.667 0.00 0.00 0.00 3.16
1701 2982 3.991051 CACCACTCCGTCGCAGGT 61.991 66.667 0.00 0.00 0.00 4.00
1821 3102 3.244491 GCAGTAATCAGATGCTCCAGGAT 60.244 47.826 0.00 0.00 37.00 3.24
2051 3343 8.486210 TGCTCAGGATGTATGTATTTAGTTCTT 58.514 33.333 0.00 0.00 37.40 2.52
2123 3420 3.265791 CATGCTTCTTACCAGACCAGTC 58.734 50.000 0.00 0.00 0.00 3.51
2138 3438 3.027412 ACCAGTCGCATTCAGTCTCTAT 58.973 45.455 0.00 0.00 0.00 1.98
2179 3483 5.125097 AGTGATTGATCTCTTGGACAATTGC 59.875 40.000 5.05 0.00 33.92 3.56
2180 3484 5.125097 GTGATTGATCTCTTGGACAATTGCT 59.875 40.000 5.05 0.00 33.92 3.91
2181 3485 5.713389 TGATTGATCTCTTGGACAATTGCTT 59.287 36.000 5.05 0.00 33.92 3.91
2182 3486 5.381174 TTGATCTCTTGGACAATTGCTTG 57.619 39.130 5.05 0.00 38.39 4.01
2317 3625 4.586001 TGAGCTGCTCATGTCATATGACTA 59.414 41.667 30.67 19.78 39.44 2.59
2394 3723 7.818446 ACATCATTCAGAGATACATGCTACATC 59.182 37.037 0.00 0.00 0.00 3.06
2397 3726 5.619625 TCAGAGATACATGCTACATCGAG 57.380 43.478 0.00 0.00 0.00 4.04
2412 3741 1.380524 TCGAGATTCTCCCAGTCGTC 58.619 55.000 8.09 0.00 32.49 4.20
2438 3767 9.927668 CCAAAAATCAAATAGAGGTAATGTGTT 57.072 29.630 0.00 0.00 0.00 3.32
2446 3775 9.743057 CAAATAGAGGTAATGTGTTTTTGTCAA 57.257 29.630 0.00 0.00 0.00 3.18
2449 3778 7.581213 AGAGGTAATGTGTTTTTGTCAATGA 57.419 32.000 0.00 0.00 0.00 2.57
2495 3828 6.848451 TCTAAGTTTCACCAAATATTTCGGC 58.152 36.000 13.42 2.05 0.00 5.54
2498 3831 4.082245 AGTTTCACCAAATATTTCGGCCTG 60.082 41.667 0.00 0.00 0.00 4.85
2519 3852 9.952188 GGCCTGTTTGTATCTAATAAGATTTTC 57.048 33.333 0.00 0.00 39.55 2.29
2619 3952 7.987649 CGGAAGGAGGTATATACAGTCTATTC 58.012 42.308 14.70 15.20 0.00 1.75
2663 3997 4.963276 TGCCTTTTATTCCATTGACTCG 57.037 40.909 0.00 0.00 0.00 4.18
2665 4000 4.394920 TGCCTTTTATTCCATTGACTCGTC 59.605 41.667 0.00 0.00 0.00 4.20
2673 4008 5.506686 TTCCATTGACTCGTCTATCTCAG 57.493 43.478 0.00 0.00 0.00 3.35
2674 4009 4.781934 TCCATTGACTCGTCTATCTCAGA 58.218 43.478 0.00 0.00 0.00 3.27
2877 4216 1.067250 GGATCTGAGGAGCTGCGAC 59.933 63.158 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.559231 TGAGAATGTACGTACAGGTGCA 59.441 45.455 30.15 22.05 39.92 4.57
47 48 3.428999 CCCTGAGAATGTACGTACAGGTG 60.429 52.174 30.15 17.00 41.98 4.00
145 149 4.164988 AGGCAGTTTCTGAGTATATTGGCT 59.835 41.667 0.66 0.00 35.69 4.75
146 150 4.455606 AGGCAGTTTCTGAGTATATTGGC 58.544 43.478 0.66 0.00 32.44 4.52
147 151 6.183360 CCAAAGGCAGTTTCTGAGTATATTGG 60.183 42.308 0.66 0.00 32.44 3.16
148 152 6.375455 ACCAAAGGCAGTTTCTGAGTATATTG 59.625 38.462 0.66 0.00 32.44 1.90
149 153 6.375455 CACCAAAGGCAGTTTCTGAGTATATT 59.625 38.462 0.66 0.00 32.44 1.28
150 154 5.882557 CACCAAAGGCAGTTTCTGAGTATAT 59.117 40.000 0.66 0.00 32.44 0.86
151 155 5.012664 TCACCAAAGGCAGTTTCTGAGTATA 59.987 40.000 0.66 0.00 32.44 1.47
152 156 4.074970 CACCAAAGGCAGTTTCTGAGTAT 58.925 43.478 0.66 0.00 32.44 2.12
153 157 3.135712 TCACCAAAGGCAGTTTCTGAGTA 59.864 43.478 0.66 0.00 32.44 2.59
154 158 2.092429 TCACCAAAGGCAGTTTCTGAGT 60.092 45.455 0.66 0.00 32.44 3.41
155 159 2.291741 GTCACCAAAGGCAGTTTCTGAG 59.708 50.000 0.66 0.00 32.44 3.35
156 160 2.297701 GTCACCAAAGGCAGTTTCTGA 58.702 47.619 0.66 0.00 32.44 3.27
157 161 1.338020 GGTCACCAAAGGCAGTTTCTG 59.662 52.381 0.00 0.00 34.12 3.02
158 162 1.692411 GGTCACCAAAGGCAGTTTCT 58.308 50.000 0.00 0.00 0.00 2.52
159 163 0.310854 CGGTCACCAAAGGCAGTTTC 59.689 55.000 0.00 0.00 0.00 2.78
160 164 0.106918 TCGGTCACCAAAGGCAGTTT 60.107 50.000 0.00 0.00 0.00 2.66
161 165 0.535102 CTCGGTCACCAAAGGCAGTT 60.535 55.000 0.00 0.00 0.00 3.16
162 166 1.071471 CTCGGTCACCAAAGGCAGT 59.929 57.895 0.00 0.00 0.00 4.40
163 167 2.328099 GCTCGGTCACCAAAGGCAG 61.328 63.158 0.00 0.00 0.00 4.85
164 168 2.281484 GCTCGGTCACCAAAGGCA 60.281 61.111 0.00 0.00 0.00 4.75
165 169 2.032681 AGCTCGGTCACCAAAGGC 59.967 61.111 0.00 0.00 0.00 4.35
166 170 0.951040 GTGAGCTCGGTCACCAAAGG 60.951 60.000 16.18 0.00 40.96 3.11
167 171 0.034059 AGTGAGCTCGGTCACCAAAG 59.966 55.000 21.54 0.00 46.94 2.77
168 172 0.249868 CAGTGAGCTCGGTCACCAAA 60.250 55.000 21.54 0.00 46.94 3.28
169 173 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
170 174 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
171 175 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
172 176 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
173 177 1.979155 CCTCCAGTGAGCTCGGTCA 60.979 63.158 9.64 0.00 37.29 4.02
174 178 2.888863 CCTCCAGTGAGCTCGGTC 59.111 66.667 9.64 2.22 37.29 4.79
175 179 3.386237 GCCTCCAGTGAGCTCGGT 61.386 66.667 9.64 0.00 37.29 4.69
176 180 4.154347 GGCCTCCAGTGAGCTCGG 62.154 72.222 9.64 4.39 37.29 4.63
177 181 2.570582 GAAGGCCTCCAGTGAGCTCG 62.571 65.000 5.23 0.00 37.29 5.03
178 182 1.220477 GAAGGCCTCCAGTGAGCTC 59.780 63.158 5.23 6.82 37.29 4.09
179 183 1.537397 TGAAGGCCTCCAGTGAGCT 60.537 57.895 5.23 0.00 37.29 4.09
180 184 1.078567 CTGAAGGCCTCCAGTGAGC 60.079 63.158 11.59 0.00 37.29 4.26
181 185 1.202330 ATCTGAAGGCCTCCAGTGAG 58.798 55.000 19.66 0.00 38.42 3.51
182 186 1.556911 GAATCTGAAGGCCTCCAGTGA 59.443 52.381 19.66 0.25 0.00 3.41
183 187 1.280133 TGAATCTGAAGGCCTCCAGTG 59.720 52.381 19.66 0.00 0.00 3.66
184 188 1.661463 TGAATCTGAAGGCCTCCAGT 58.339 50.000 19.66 0.00 0.00 4.00
185 189 2.795231 TTGAATCTGAAGGCCTCCAG 57.205 50.000 13.90 13.90 0.00 3.86
186 190 3.524095 TTTTGAATCTGAAGGCCTCCA 57.476 42.857 5.23 0.00 0.00 3.86
187 191 4.463891 TGAATTTTGAATCTGAAGGCCTCC 59.536 41.667 5.23 0.00 0.00 4.30
188 192 5.649782 TGAATTTTGAATCTGAAGGCCTC 57.350 39.130 5.23 0.00 0.00 4.70
189 193 6.423776 TTTGAATTTTGAATCTGAAGGCCT 57.576 33.333 0.00 0.00 0.00 5.19
190 194 7.677454 AATTTGAATTTTGAATCTGAAGGCC 57.323 32.000 0.00 0.00 0.00 5.19
191 195 8.776470 TGAAATTTGAATTTTGAATCTGAAGGC 58.224 29.630 0.00 0.00 38.64 4.35
255 259 9.632638 ATGCCTTCATGTATATCTGTACTTTTT 57.367 29.630 0.00 0.00 0.00 1.94
258 262 9.712305 GTTATGCCTTCATGTATATCTGTACTT 57.288 33.333 0.00 0.00 34.22 2.24
259 263 8.870116 TGTTATGCCTTCATGTATATCTGTACT 58.130 33.333 0.00 0.00 34.22 2.73
260 264 8.926710 GTGTTATGCCTTCATGTATATCTGTAC 58.073 37.037 0.00 0.00 34.22 2.90
261 265 8.646900 TGTGTTATGCCTTCATGTATATCTGTA 58.353 33.333 0.00 0.00 34.22 2.74
262 266 7.442364 GTGTGTTATGCCTTCATGTATATCTGT 59.558 37.037 0.00 0.00 34.22 3.41
263 267 7.442062 TGTGTGTTATGCCTTCATGTATATCTG 59.558 37.037 0.00 0.00 34.22 2.90
264 268 7.508687 TGTGTGTTATGCCTTCATGTATATCT 58.491 34.615 0.00 0.00 34.22 1.98
265 269 7.728847 TGTGTGTTATGCCTTCATGTATATC 57.271 36.000 0.00 0.00 34.22 1.63
266 270 7.720957 ACATGTGTGTTATGCCTTCATGTATAT 59.279 33.333 0.00 0.00 41.23 0.86
267 271 7.012232 CACATGTGTGTTATGCCTTCATGTATA 59.988 37.037 18.03 0.00 41.14 1.47
268 272 5.887598 ACATGTGTGTTATGCCTTCATGTAT 59.112 36.000 0.00 0.00 41.23 2.29
269 273 5.123661 CACATGTGTGTTATGCCTTCATGTA 59.876 40.000 18.03 0.00 41.14 2.29
270 274 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
271 275 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
272 276 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
287 291 4.343526 TGCCCTGAAAATTTACACACATGT 59.656 37.500 0.00 0.00 43.30 3.21
288 292 4.880759 TGCCCTGAAAATTTACACACATG 58.119 39.130 0.00 0.00 0.00 3.21
289 293 5.543507 TTGCCCTGAAAATTTACACACAT 57.456 34.783 0.00 0.00 0.00 3.21
290 294 5.344743 TTTGCCCTGAAAATTTACACACA 57.655 34.783 0.00 0.00 0.00 3.72
291 295 6.859420 ATTTTGCCCTGAAAATTTACACAC 57.141 33.333 0.00 0.00 32.70 3.82
292 296 6.642950 CGTATTTTGCCCTGAAAATTTACACA 59.357 34.615 0.00 0.00 36.94 3.72
293 297 6.643360 ACGTATTTTGCCCTGAAAATTTACAC 59.357 34.615 0.00 0.00 36.94 2.90
294 298 6.750148 ACGTATTTTGCCCTGAAAATTTACA 58.250 32.000 0.00 0.00 36.94 2.41
295 299 7.382759 TCAACGTATTTTGCCCTGAAAATTTAC 59.617 33.333 0.00 0.00 36.94 2.01
296 300 7.434492 TCAACGTATTTTGCCCTGAAAATTTA 58.566 30.769 0.00 0.00 36.94 1.40
297 301 6.284459 TCAACGTATTTTGCCCTGAAAATTT 58.716 32.000 0.00 0.00 36.94 1.82
298 302 5.848406 TCAACGTATTTTGCCCTGAAAATT 58.152 33.333 0.00 0.00 36.94 1.82
299 303 5.461032 TCAACGTATTTTGCCCTGAAAAT 57.539 34.783 0.00 0.00 38.69 1.82
300 304 4.920640 TCAACGTATTTTGCCCTGAAAA 57.079 36.364 0.00 0.00 0.00 2.29
301 305 6.375736 TCATATCAACGTATTTTGCCCTGAAA 59.624 34.615 0.00 0.00 0.00 2.69
302 306 5.883115 TCATATCAACGTATTTTGCCCTGAA 59.117 36.000 0.00 0.00 0.00 3.02
303 307 5.432645 TCATATCAACGTATTTTGCCCTGA 58.567 37.500 0.00 0.00 0.00 3.86
304 308 5.277974 CCTCATATCAACGTATTTTGCCCTG 60.278 44.000 0.00 0.00 0.00 4.45
305 309 4.821805 CCTCATATCAACGTATTTTGCCCT 59.178 41.667 0.00 0.00 0.00 5.19
306 310 4.023193 CCCTCATATCAACGTATTTTGCCC 60.023 45.833 0.00 0.00 0.00 5.36
307 311 4.556699 GCCCTCATATCAACGTATTTTGCC 60.557 45.833 0.00 0.00 0.00 4.52
308 312 4.275936 AGCCCTCATATCAACGTATTTTGC 59.724 41.667 0.00 0.00 0.00 3.68
309 313 5.296780 ACAGCCCTCATATCAACGTATTTTG 59.703 40.000 0.00 0.00 0.00 2.44
310 314 5.296780 CACAGCCCTCATATCAACGTATTTT 59.703 40.000 0.00 0.00 0.00 1.82
311 315 4.816385 CACAGCCCTCATATCAACGTATTT 59.184 41.667 0.00 0.00 0.00 1.40
312 316 4.380531 CACAGCCCTCATATCAACGTATT 58.619 43.478 0.00 0.00 0.00 1.89
313 317 3.803715 GCACAGCCCTCATATCAACGTAT 60.804 47.826 0.00 0.00 0.00 3.06
314 318 2.483013 GCACAGCCCTCATATCAACGTA 60.483 50.000 0.00 0.00 0.00 3.57
315 319 1.743772 GCACAGCCCTCATATCAACGT 60.744 52.381 0.00 0.00 0.00 3.99
316 320 0.940126 GCACAGCCCTCATATCAACG 59.060 55.000 0.00 0.00 0.00 4.10
317 321 2.042686 TGCACAGCCCTCATATCAAC 57.957 50.000 0.00 0.00 0.00 3.18
318 322 2.804986 TTGCACAGCCCTCATATCAA 57.195 45.000 0.00 0.00 0.00 2.57
319 323 2.804986 TTTGCACAGCCCTCATATCA 57.195 45.000 0.00 0.00 0.00 2.15
338 342 9.487442 TGTTAAATAGCCCCAGATTTATCTTTT 57.513 29.630 0.00 0.00 34.22 2.27
339 343 8.914011 GTGTTAAATAGCCCCAGATTTATCTTT 58.086 33.333 0.00 0.00 34.22 2.52
340 344 8.058847 TGTGTTAAATAGCCCCAGATTTATCTT 58.941 33.333 0.00 0.00 34.22 2.40
341 345 7.582719 TGTGTTAAATAGCCCCAGATTTATCT 58.417 34.615 0.00 0.00 37.72 1.98
342 346 7.817418 TGTGTTAAATAGCCCCAGATTTATC 57.183 36.000 0.00 0.00 29.87 1.75
343 347 8.004215 TCATGTGTTAAATAGCCCCAGATTTAT 58.996 33.333 0.00 0.00 29.87 1.40
344 348 7.350382 TCATGTGTTAAATAGCCCCAGATTTA 58.650 34.615 0.00 0.00 0.00 1.40
345 349 6.194235 TCATGTGTTAAATAGCCCCAGATTT 58.806 36.000 0.00 0.00 0.00 2.17
346 350 5.765510 TCATGTGTTAAATAGCCCCAGATT 58.234 37.500 0.00 0.00 0.00 2.40
347 351 5.387113 TCATGTGTTAAATAGCCCCAGAT 57.613 39.130 0.00 0.00 0.00 2.90
348 352 4.853468 TCATGTGTTAAATAGCCCCAGA 57.147 40.909 0.00 0.00 0.00 3.86
349 353 6.299141 AGTATCATGTGTTAAATAGCCCCAG 58.701 40.000 0.00 0.00 0.00 4.45
350 354 6.260700 AGTATCATGTGTTAAATAGCCCCA 57.739 37.500 0.00 0.00 0.00 4.96
351 355 8.863872 AATAGTATCATGTGTTAAATAGCCCC 57.136 34.615 0.00 0.00 0.00 5.80
352 356 9.502091 TGAATAGTATCATGTGTTAAATAGCCC 57.498 33.333 0.00 0.00 0.00 5.19
358 362 9.778741 GGAGGATGAATAGTATCATGTGTTAAA 57.221 33.333 0.00 0.00 40.08 1.52
359 363 8.375506 GGGAGGATGAATAGTATCATGTGTTAA 58.624 37.037 0.00 0.00 40.08 2.01
360 364 7.512402 TGGGAGGATGAATAGTATCATGTGTTA 59.488 37.037 0.00 0.00 40.08 2.41
361 365 6.329986 TGGGAGGATGAATAGTATCATGTGTT 59.670 38.462 0.00 0.00 40.08 3.32
362 366 5.846164 TGGGAGGATGAATAGTATCATGTGT 59.154 40.000 0.00 0.00 40.08 3.72
363 367 6.364568 TGGGAGGATGAATAGTATCATGTG 57.635 41.667 0.00 0.00 40.08 3.21
364 368 5.486775 CCTGGGAGGATGAATAGTATCATGT 59.513 44.000 0.00 0.00 40.08 3.21
365 369 5.628666 GCCTGGGAGGATGAATAGTATCATG 60.629 48.000 0.00 0.00 40.08 3.07
366 370 4.472833 GCCTGGGAGGATGAATAGTATCAT 59.527 45.833 0.00 0.00 42.62 2.45
367 371 3.840666 GCCTGGGAGGATGAATAGTATCA 59.159 47.826 0.00 0.00 37.67 2.15
368 372 3.198853 GGCCTGGGAGGATGAATAGTATC 59.801 52.174 0.00 0.00 37.67 2.24
369 373 3.185455 GGCCTGGGAGGATGAATAGTAT 58.815 50.000 0.00 0.00 37.67 2.12
370 374 2.090210 TGGCCTGGGAGGATGAATAGTA 60.090 50.000 3.32 0.00 37.67 1.82
371 375 1.345422 TGGCCTGGGAGGATGAATAGT 60.345 52.381 3.32 0.00 37.67 2.12
372 376 1.438469 TGGCCTGGGAGGATGAATAG 58.562 55.000 3.32 0.00 37.67 1.73
373 377 1.706866 CATGGCCTGGGAGGATGAATA 59.293 52.381 3.32 0.00 37.67 1.75
374 378 0.481567 CATGGCCTGGGAGGATGAAT 59.518 55.000 3.32 0.00 37.67 2.57
375 379 0.624206 TCATGGCCTGGGAGGATGAA 60.624 55.000 3.32 0.00 37.67 2.57
376 380 0.624206 TTCATGGCCTGGGAGGATGA 60.624 55.000 3.32 0.00 37.67 2.92
377 381 0.481567 ATTCATGGCCTGGGAGGATG 59.518 55.000 3.32 0.00 37.67 3.51
378 382 1.238615 AATTCATGGCCTGGGAGGAT 58.761 50.000 3.32 0.00 37.67 3.24
379 383 1.009997 AAATTCATGGCCTGGGAGGA 58.990 50.000 3.32 0.00 37.67 3.71
380 384 2.754012 TAAATTCATGGCCTGGGAGG 57.246 50.000 3.32 0.00 38.80 4.30
381 385 4.109877 AGATAAATTCATGGCCTGGGAG 57.890 45.455 3.32 0.00 0.00 4.30
382 386 4.541250 AAGATAAATTCATGGCCTGGGA 57.459 40.909 3.32 0.00 0.00 4.37
383 387 5.619132 AAAAGATAAATTCATGGCCTGGG 57.381 39.130 3.32 0.00 0.00 4.45
403 407 2.360483 TGAAATGCGACCTCTGCAAAAA 59.640 40.909 0.00 0.00 46.87 1.94
404 408 1.952990 TGAAATGCGACCTCTGCAAAA 59.047 42.857 0.00 0.00 46.87 2.44
405 409 1.603456 TGAAATGCGACCTCTGCAAA 58.397 45.000 0.00 0.00 46.87 3.68
406 410 1.266718 GTTGAAATGCGACCTCTGCAA 59.733 47.619 0.00 0.00 46.87 4.08
408 412 0.179215 CGTTGAAATGCGACCTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
409 413 1.148310 ACGTTGAAATGCGACCTCTG 58.852 50.000 0.00 0.00 0.00 3.35
410 414 2.736144 TACGTTGAAATGCGACCTCT 57.264 45.000 0.00 0.00 0.00 3.69
411 415 4.142988 TGAAATACGTTGAAATGCGACCTC 60.143 41.667 0.00 0.00 0.00 3.85
412 416 3.749088 TGAAATACGTTGAAATGCGACCT 59.251 39.130 0.00 0.00 0.00 3.85
413 417 4.073169 TGAAATACGTTGAAATGCGACC 57.927 40.909 0.00 0.00 0.00 4.79
414 418 5.320723 TGATGAAATACGTTGAAATGCGAC 58.679 37.500 0.00 0.00 0.00 5.19
415 419 5.538067 TGATGAAATACGTTGAAATGCGA 57.462 34.783 0.00 0.00 0.00 5.10
416 420 5.964751 TCATGATGAAATACGTTGAAATGCG 59.035 36.000 0.00 0.00 0.00 4.73
417 421 7.739022 TTCATGATGAAATACGTTGAAATGC 57.261 32.000 5.21 0.00 32.71 3.56
430 434 9.761504 ACATGTGTGTAAAATTTCATGATGAAA 57.238 25.926 21.39 21.39 42.56 2.69
431 435 9.194271 CACATGTGTGTAAAATTTCATGATGAA 57.806 29.630 18.03 3.29 40.96 2.57
432 436 7.813627 CCACATGTGTGTAAAATTTCATGATGA 59.186 33.333 23.79 0.00 44.21 2.92
433 437 7.063662 CCCACATGTGTGTAAAATTTCATGATG 59.936 37.037 23.79 12.60 44.21 3.07
434 438 7.098477 CCCACATGTGTGTAAAATTTCATGAT 58.902 34.615 23.79 4.46 44.21 2.45
435 439 6.041409 ACCCACATGTGTGTAAAATTTCATGA 59.959 34.615 23.79 0.00 44.21 3.07
436 440 6.222389 ACCCACATGTGTGTAAAATTTCATG 58.778 36.000 23.79 11.64 44.21 3.07
437 441 6.418057 ACCCACATGTGTGTAAAATTTCAT 57.582 33.333 23.79 0.00 44.21 2.57
438 442 5.860941 ACCCACATGTGTGTAAAATTTCA 57.139 34.783 23.79 0.00 44.21 2.69
439 443 7.203910 TGTAACCCACATGTGTGTAAAATTTC 58.796 34.615 23.79 2.88 44.21 2.17
440 444 7.113658 TGTAACCCACATGTGTGTAAAATTT 57.886 32.000 23.79 5.77 44.21 1.82
441 445 6.716934 TGTAACCCACATGTGTGTAAAATT 57.283 33.333 23.79 6.47 44.21 1.82
442 446 6.909550 ATGTAACCCACATGTGTGTAAAAT 57.090 33.333 23.79 10.24 46.41 1.82
454 458 5.624967 CGTGTATGTAAGGATGTAACCCACA 60.625 44.000 0.00 0.00 42.69 4.17
455 459 4.807304 CGTGTATGTAAGGATGTAACCCAC 59.193 45.833 0.00 0.00 0.00 4.61
456 460 4.681244 GCGTGTATGTAAGGATGTAACCCA 60.681 45.833 0.00 0.00 0.00 4.51
457 461 3.805971 GCGTGTATGTAAGGATGTAACCC 59.194 47.826 0.00 0.00 0.00 4.11
458 462 4.435425 TGCGTGTATGTAAGGATGTAACC 58.565 43.478 0.00 0.00 0.00 2.85
459 463 7.884816 ATATGCGTGTATGTAAGGATGTAAC 57.115 36.000 0.00 0.00 0.00 2.50
460 464 8.896320 AAATATGCGTGTATGTAAGGATGTAA 57.104 30.769 0.00 0.00 0.00 2.41
461 465 8.896320 AAAATATGCGTGTATGTAAGGATGTA 57.104 30.769 0.00 0.00 0.00 2.29
462 466 7.801716 AAAATATGCGTGTATGTAAGGATGT 57.198 32.000 0.00 0.00 0.00 3.06
516 520 9.258826 GGCCTTTATTTTTGCAAAATTCAAATT 57.741 25.926 24.39 7.26 33.94 1.82
517 521 8.640651 AGGCCTTTATTTTTGCAAAATTCAAAT 58.359 25.926 24.39 16.44 33.94 2.32
518 522 8.005192 AGGCCTTTATTTTTGCAAAATTCAAA 57.995 26.923 24.39 20.28 0.00 2.69
519 523 7.255416 GGAGGCCTTTATTTTTGCAAAATTCAA 60.255 33.333 24.39 16.60 0.00 2.69
520 524 6.206438 GGAGGCCTTTATTTTTGCAAAATTCA 59.794 34.615 24.39 11.11 0.00 2.57
521 525 6.206438 TGGAGGCCTTTATTTTTGCAAAATTC 59.794 34.615 24.39 6.58 0.00 2.17
522 526 6.067350 TGGAGGCCTTTATTTTTGCAAAATT 58.933 32.000 24.39 21.79 0.00 1.82
523 527 5.629125 TGGAGGCCTTTATTTTTGCAAAAT 58.371 33.333 24.39 16.25 0.00 1.82
524 528 5.041191 TGGAGGCCTTTATTTTTGCAAAA 57.959 34.783 20.46 20.46 0.00 2.44
525 529 4.696479 TGGAGGCCTTTATTTTTGCAAA 57.304 36.364 6.77 8.05 0.00 3.68
526 530 4.565236 CCATGGAGGCCTTTATTTTTGCAA 60.565 41.667 6.77 0.00 0.00 4.08
527 531 3.055240 CCATGGAGGCCTTTATTTTTGCA 60.055 43.478 6.77 0.00 0.00 4.08
528 532 3.197549 TCCATGGAGGCCTTTATTTTTGC 59.802 43.478 11.44 0.00 37.29 3.68
529 533 5.364735 AGATCCATGGAGGCCTTTATTTTTG 59.635 40.000 21.33 0.00 37.29 2.44
530 534 5.532155 AGATCCATGGAGGCCTTTATTTTT 58.468 37.500 21.33 0.00 37.29 1.94
531 535 5.143369 GAGATCCATGGAGGCCTTTATTTT 58.857 41.667 21.33 0.00 37.29 1.82
532 536 4.734266 GAGATCCATGGAGGCCTTTATTT 58.266 43.478 21.33 0.00 37.29 1.40
533 537 3.244700 CGAGATCCATGGAGGCCTTTATT 60.245 47.826 21.33 0.00 37.29 1.40
534 538 2.304180 CGAGATCCATGGAGGCCTTTAT 59.696 50.000 21.33 0.95 37.29 1.40
535 539 1.694150 CGAGATCCATGGAGGCCTTTA 59.306 52.381 21.33 0.00 37.29 1.85
536 540 0.471617 CGAGATCCATGGAGGCCTTT 59.528 55.000 21.33 1.01 37.29 3.11
537 541 1.414061 CCGAGATCCATGGAGGCCTT 61.414 60.000 21.33 1.87 37.29 4.35
538 542 1.840650 CCGAGATCCATGGAGGCCT 60.841 63.158 21.33 16.20 37.29 5.19
539 543 2.746359 CCGAGATCCATGGAGGCC 59.254 66.667 21.33 11.64 37.29 5.19
540 544 2.031768 GCCGAGATCCATGGAGGC 59.968 66.667 22.86 22.86 37.29 4.70
541 545 1.825281 GAGGCCGAGATCCATGGAGG 61.825 65.000 21.33 16.45 39.47 4.30
542 546 1.670590 GAGGCCGAGATCCATGGAG 59.329 63.158 21.33 7.10 0.00 3.86
543 547 1.838846 GGAGGCCGAGATCCATGGA 60.839 63.158 18.88 18.88 35.54 3.41
544 548 1.699054 TTGGAGGCCGAGATCCATGG 61.699 60.000 11.99 4.97 44.87 3.66
545 549 0.181114 TTTGGAGGCCGAGATCCATG 59.819 55.000 11.99 0.00 44.87 3.66
546 550 0.918983 TTTTGGAGGCCGAGATCCAT 59.081 50.000 11.99 0.00 44.87 3.41
547 551 0.035439 GTTTTGGAGGCCGAGATCCA 60.035 55.000 7.35 7.35 43.87 3.41
548 552 1.090052 CGTTTTGGAGGCCGAGATCC 61.090 60.000 0.00 0.00 36.05 3.36
549 553 1.090052 CCGTTTTGGAGGCCGAGATC 61.090 60.000 0.00 0.00 42.00 2.75
550 554 1.078426 CCGTTTTGGAGGCCGAGAT 60.078 57.895 0.00 0.00 42.00 2.75
551 555 2.345991 CCGTTTTGGAGGCCGAGA 59.654 61.111 0.00 0.00 42.00 4.04
557 561 0.811281 GGAGAATGCCGTTTTGGAGG 59.189 55.000 0.00 0.00 42.00 4.30
558 562 0.811281 GGGAGAATGCCGTTTTGGAG 59.189 55.000 0.00 0.00 36.28 3.86
559 563 2.955609 GGGAGAATGCCGTTTTGGA 58.044 52.632 0.00 0.00 36.28 3.53
568 572 4.632153 ACGTGAGTATATTGGGAGAATGC 58.368 43.478 0.00 0.00 46.88 3.56
608 643 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
616 651 2.424733 GCTACTCCCTCCGTCCCAC 61.425 68.421 0.00 0.00 0.00 4.61
618 653 0.976590 AAAGCTACTCCCTCCGTCCC 60.977 60.000 0.00 0.00 0.00 4.46
622 657 1.134965 CAGTCAAAGCTACTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
633 668 9.605275 TCTAATATATATGATGGCAGTCAAAGC 57.395 33.333 0.00 0.00 0.00 3.51
656 691 4.466370 TCCGAATCCTTGAAAGCTCTTCTA 59.534 41.667 9.17 2.84 0.00 2.10
657 692 3.261897 TCCGAATCCTTGAAAGCTCTTCT 59.738 43.478 9.17 0.00 0.00 2.85
658 693 3.600388 TCCGAATCCTTGAAAGCTCTTC 58.400 45.455 0.00 0.00 0.00 2.87
660 695 2.093235 CCTCCGAATCCTTGAAAGCTCT 60.093 50.000 0.00 0.00 0.00 4.09
661 696 2.284190 CCTCCGAATCCTTGAAAGCTC 58.716 52.381 0.00 0.00 0.00 4.09
664 1798 4.192317 CCTTACCTCCGAATCCTTGAAAG 58.808 47.826 0.00 0.00 0.00 2.62
670 1804 2.238898 CAAACCCTTACCTCCGAATCCT 59.761 50.000 0.00 0.00 0.00 3.24
683 1817 2.578786 CCTTGTCGTAACCAAACCCTT 58.421 47.619 0.00 0.00 0.00 3.95
692 1826 1.253999 CTCGTACGCCTTGTCGTAAC 58.746 55.000 11.24 0.00 45.07 2.50
695 1829 0.662374 CAACTCGTACGCCTTGTCGT 60.662 55.000 11.24 0.00 45.49 4.34
753 1944 0.751277 CAGTTTGGCCACACTGACCA 60.751 55.000 37.93 5.73 42.74 4.02
771 1974 3.731728 GACTGATGGGGCCAGCCA 61.732 66.667 11.50 3.54 37.98 4.75
848 2059 3.879885 TCGGGTGGTGGTGGGTTG 61.880 66.667 0.00 0.00 0.00 3.77
864 2075 2.263545 GGGGGTAGTATGGTATGGGTC 58.736 57.143 0.00 0.00 0.00 4.46
865 2076 1.483686 CGGGGGTAGTATGGTATGGGT 60.484 57.143 0.00 0.00 0.00 4.51
866 2077 1.272807 CGGGGGTAGTATGGTATGGG 58.727 60.000 0.00 0.00 0.00 4.00
868 2079 0.245539 CGCGGGGGTAGTATGGTATG 59.754 60.000 0.00 0.00 0.00 2.39
872 2083 4.309950 GCCGCGGGGGTAGTATGG 62.310 72.222 29.38 0.00 38.44 2.74
873 2084 4.309950 GGCCGCGGGGGTAGTATG 62.310 72.222 29.38 0.00 38.44 2.39
874 2085 4.551960 AGGCCGCGGGGGTAGTAT 62.552 66.667 29.38 0.00 38.44 2.12
1371 2640 3.369261 GCTCCTGCTCTTCTTCATCTTCA 60.369 47.826 0.00 0.00 36.03 3.02
1393 2662 0.612174 TCGTGGTCCTCTTCCTCCTG 60.612 60.000 0.00 0.00 0.00 3.86
1398 2667 1.507174 CTCGTCGTGGTCCTCTTCC 59.493 63.158 0.00 0.00 0.00 3.46
1399 2668 1.507174 CCTCGTCGTGGTCCTCTTC 59.493 63.158 5.15 0.00 0.00 2.87
1400 2669 1.977544 CCCTCGTCGTGGTCCTCTT 60.978 63.158 12.10 0.00 0.00 2.85
1401 2670 2.361357 CCCTCGTCGTGGTCCTCT 60.361 66.667 12.10 0.00 0.00 3.69
1402 2671 3.450115 CCCCTCGTCGTGGTCCTC 61.450 72.222 12.10 0.00 0.00 3.71
1408 2677 3.450115 GTCCTCCCCCTCGTCGTG 61.450 72.222 0.00 0.00 0.00 4.35
1410 2679 4.753662 TGGTCCTCCCCCTCGTCG 62.754 72.222 0.00 0.00 0.00 5.12
1413 2682 1.612442 TTCTTGGTCCTCCCCCTCG 60.612 63.158 0.00 0.00 0.00 4.63
1414 2683 0.252742 TCTTCTTGGTCCTCCCCCTC 60.253 60.000 0.00 0.00 0.00 4.30
1418 2687 1.199615 CTCCTCTTCTTGGTCCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
1566 2844 3.406361 GTGGACAGCGTGACAGCG 61.406 66.667 0.00 0.00 43.00 5.18
1650 2928 1.621672 CCTCCTCAGCCTTGACCCTC 61.622 65.000 0.00 0.00 0.00 4.30
1674 2955 4.451150 GAGTGGTGATCCGCCGCA 62.451 66.667 16.17 0.00 45.75 5.69
1701 2982 1.003839 GCCGATGTCCCTCAACACA 60.004 57.895 0.00 0.00 30.55 3.72
2097 3394 4.042311 TGGTCTGGTAAGAAGCATGGTTTA 59.958 41.667 12.13 0.00 33.05 2.01
2123 3420 5.327091 CAACCAAAATAGAGACTGAATGCG 58.673 41.667 0.00 0.00 0.00 4.73
2138 3438 2.828520 TCACTGCAAAGACCAACCAAAA 59.171 40.909 0.00 0.00 0.00 2.44
2179 3483 6.417635 CAGGCATACAATTAAATTACGGCAAG 59.582 38.462 0.00 0.00 0.00 4.01
2180 3484 6.269315 CAGGCATACAATTAAATTACGGCAA 58.731 36.000 0.00 0.00 0.00 4.52
2181 3485 5.734786 GCAGGCATACAATTAAATTACGGCA 60.735 40.000 0.00 0.00 0.00 5.69
2182 3486 4.679654 GCAGGCATACAATTAAATTACGGC 59.320 41.667 0.00 0.00 0.00 5.68
2394 3723 0.382515 GGACGACTGGGAGAATCTCG 59.617 60.000 3.96 0.00 39.79 4.04
2397 3726 2.762535 TTTGGACGACTGGGAGAATC 57.237 50.000 0.00 0.00 0.00 2.52
2412 3741 9.927668 AACACATTACCTCTATTTGATTTTTGG 57.072 29.630 0.00 0.00 0.00 3.28
2470 3802 7.416326 GGCCGAAATATTTGGTGAAACTTAGAT 60.416 37.037 5.17 0.00 36.74 1.98
2493 3826 9.952188 GAAAATCTTATTAGATACAAACAGGCC 57.048 33.333 0.00 0.00 40.26 5.19
2519 3852 6.543831 TGGAGTCCAGAAAGAAAGAAAGAAAG 59.456 38.462 8.12 0.00 0.00 2.62
2522 3855 5.630415 TGGAGTCCAGAAAGAAAGAAAGA 57.370 39.130 8.12 0.00 0.00 2.52
2655 3988 5.301551 AGCATTCTGAGATAGACGAGTCAAT 59.698 40.000 5.99 0.00 34.43 2.57
2673 4008 3.365465 GCAGCAGATCATCATCAGCATTC 60.365 47.826 0.00 0.00 42.61 2.67
2674 4009 2.554462 GCAGCAGATCATCATCAGCATT 59.446 45.455 0.00 0.00 42.61 3.56
2877 4216 0.738975 TCTTCATCAGTCCTACGGCG 59.261 55.000 4.80 4.80 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.