Multiple sequence alignment - TraesCS5D01G548300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G548300 chr5D 100.000 5218 0 0 1 5218 555932953 555927736 0.000000e+00 9636.0
1 TraesCS5D01G548300 chr5D 91.820 2005 160 4 2135 4137 555070359 555068357 0.000000e+00 2791.0
2 TraesCS5D01G548300 chr5D 86.160 1857 237 11 2172 4021 555659573 555657730 0.000000e+00 1988.0
3 TraesCS5D01G548300 chr5D 88.484 1016 105 7 1006 2018 556035826 556034820 0.000000e+00 1218.0
4 TraesCS5D01G548300 chr5D 86.888 1083 131 7 1012 2086 555071574 555070495 0.000000e+00 1203.0
5 TraesCS5D01G548300 chr5D 76.016 1968 401 63 2183 4118 558718906 558720834 0.000000e+00 953.0
6 TraesCS5D01G548300 chr5D 84.217 830 124 7 1012 1838 555660820 555659995 0.000000e+00 800.0
7 TraesCS5D01G548300 chr5D 80.526 1027 194 5 2168 3192 556109824 556108802 0.000000e+00 784.0
8 TraesCS5D01G548300 chr5D 84.806 645 43 16 4197 4820 555068339 555067729 9.670000e-167 597.0
9 TraesCS5D01G548300 chr5D 79.361 814 162 6 1035 1845 555916793 555915983 7.580000e-158 568.0
10 TraesCS5D01G548300 chr5B 95.915 4137 140 7 506 4622 695989327 695993454 0.000000e+00 6676.0
11 TraesCS5D01G548300 chr5B 90.970 2104 170 11 2135 4231 695704663 695706753 0.000000e+00 2815.0
12 TraesCS5D01G548300 chr5B 86.014 1859 235 15 2168 4015 695963004 695964848 0.000000e+00 1969.0
13 TraesCS5D01G548300 chr5B 86.590 1305 143 20 854 2138 695703276 695704568 0.000000e+00 1411.0
14 TraesCS5D01G548300 chr5B 78.438 1498 300 19 2157 3642 710344210 710345696 0.000000e+00 955.0
15 TraesCS5D01G548300 chr5B 84.345 824 121 8 1012 1831 695961092 695961911 0.000000e+00 800.0
16 TraesCS5D01G548300 chr5B 84.845 772 101 4 996 1764 695834549 695835307 0.000000e+00 763.0
17 TraesCS5D01G548300 chr5B 94.227 485 22 2 1 485 695988660 695989138 0.000000e+00 736.0
18 TraesCS5D01G548300 chr5B 79.208 808 160 8 1028 1831 695422403 695423206 5.900000e-154 555.0
19 TraesCS5D01G548300 chr5B 87.245 392 46 4 4656 5045 695718857 695719246 1.330000e-120 444.0
20 TraesCS5D01G548300 chr5B 81.132 477 75 7 1013 1488 695501913 695502375 8.250000e-98 368.0
21 TraesCS5D01G548300 chr5B 81.886 403 38 19 4263 4649 695706759 695707142 1.830000e-79 307.0
22 TraesCS5D01G548300 chr5B 77.725 211 28 10 5006 5203 695427493 695427697 1.540000e-20 111.0
23 TraesCS5D01G548300 chr5B 95.455 66 2 1 461 526 695989149 695989213 2.570000e-18 104.0
24 TraesCS5D01G548300 chr5B 87.719 57 7 0 5003 5059 710346996 710347052 3.370000e-07 67.6
25 TraesCS5D01G548300 chr4A 90.750 2519 182 19 2135 4648 613766327 613768799 0.000000e+00 3314.0
26 TraesCS5D01G548300 chr4A 89.725 1382 119 15 693 2064 613764859 613766227 0.000000e+00 1744.0
27 TraesCS5D01G548300 chr4A 86.400 375 30 10 250 608 613764476 613764845 1.760000e-104 390.0
28 TraesCS5D01G548300 chr1B 77.530 1976 393 42 2176 4125 597535582 597537532 0.000000e+00 1142.0
29 TraesCS5D01G548300 chr2B 86.408 103 9 5 597 696 547862112 547862212 1.990000e-19 108.0
30 TraesCS5D01G548300 chr2B 88.235 85 9 1 606 689 335527263 335527179 3.320000e-17 100.0
31 TraesCS5D01G548300 chr2B 85.263 95 13 1 606 699 646110927 646111021 4.300000e-16 97.1
32 TraesCS5D01G548300 chr7B 87.097 93 9 3 605 696 15307970 15307880 9.240000e-18 102.0
33 TraesCS5D01G548300 chr7A 88.235 85 9 1 606 689 112977552 112977468 3.320000e-17 100.0
34 TraesCS5D01G548300 chr3B 85.417 96 13 1 598 692 651725132 651725037 1.200000e-16 99.0
35 TraesCS5D01G548300 chr4B 87.209 86 10 1 605 689 504081646 504081731 4.300000e-16 97.1
36 TraesCS5D01G548300 chr4B 87.059 85 10 1 606 689 461693544 461693460 1.550000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G548300 chr5D 555927736 555932953 5217 True 9636.000000 9636 100.000000 1 5218 1 chr5D.!!$R2 5217
1 TraesCS5D01G548300 chr5D 555067729 555071574 3845 True 1530.333333 2791 87.838000 1012 4820 3 chr5D.!!$R5 3808
2 TraesCS5D01G548300 chr5D 555657730 555660820 3090 True 1394.000000 1988 85.188500 1012 4021 2 chr5D.!!$R6 3009
3 TraesCS5D01G548300 chr5D 556034820 556035826 1006 True 1218.000000 1218 88.484000 1006 2018 1 chr5D.!!$R3 1012
4 TraesCS5D01G548300 chr5D 558718906 558720834 1928 False 953.000000 953 76.016000 2183 4118 1 chr5D.!!$F1 1935
5 TraesCS5D01G548300 chr5D 556108802 556109824 1022 True 784.000000 784 80.526000 2168 3192 1 chr5D.!!$R4 1024
6 TraesCS5D01G548300 chr5D 555915983 555916793 810 True 568.000000 568 79.361000 1035 1845 1 chr5D.!!$R1 810
7 TraesCS5D01G548300 chr5B 695988660 695993454 4794 False 2505.333333 6676 95.199000 1 4622 3 chr5B.!!$F8 4621
8 TraesCS5D01G548300 chr5B 695703276 695707142 3866 False 1511.000000 2815 86.482000 854 4649 3 chr5B.!!$F6 3795
9 TraesCS5D01G548300 chr5B 695961092 695964848 3756 False 1384.500000 1969 85.179500 1012 4015 2 chr5B.!!$F7 3003
10 TraesCS5D01G548300 chr5B 695834549 695835307 758 False 763.000000 763 84.845000 996 1764 1 chr5B.!!$F5 768
11 TraesCS5D01G548300 chr5B 695422403 695423206 803 False 555.000000 555 79.208000 1028 1831 1 chr5B.!!$F1 803
12 TraesCS5D01G548300 chr5B 710344210 710347052 2842 False 511.300000 955 83.078500 2157 5059 2 chr5B.!!$F9 2902
13 TraesCS5D01G548300 chr4A 613764476 613768799 4323 False 1816.000000 3314 88.958333 250 4648 3 chr4A.!!$F1 4398
14 TraesCS5D01G548300 chr1B 597535582 597537532 1950 False 1142.000000 1142 77.530000 2176 4125 1 chr1B.!!$F1 1949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.030705 TTGAGGGAGAGGAGGGATGG 60.031 60.000 0.0 0.0 0.00 3.51 F
160 161 0.839853 GAGAGGAGGGATGGATGGGG 60.840 65.000 0.0 0.0 0.00 4.96 F
905 1086 1.492599 CCTTTCCTCTTCCTCCATCCC 59.507 57.143 0.0 0.0 0.00 3.85 F
1186 1377 1.751351 TGCTAGAAGACCCTGATGTCG 59.249 52.381 0.0 0.0 40.26 4.35 F
2990 4000 1.506493 GGCGACTATCAATCCAGCAG 58.494 55.000 0.0 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1186 1377 2.922758 GCGATATCCACGTCATCACCTC 60.923 54.545 0.0 0.0 0.00 3.85 R
1402 1593 4.757149 ACTCAGCTTGTAACAATCCTTGAC 59.243 41.667 0.0 0.0 0.00 3.18 R
2741 3751 2.693069 CTTTGTCCACGCTCTTCAGAT 58.307 47.619 0.0 0.0 0.00 2.90 R
3061 4071 1.064060 AGTGTTTGACGCAAGCTGAAC 59.936 47.619 0.0 0.0 45.62 3.18 R
4812 6211 0.027194 GCATGTCAGTAGCACGCATG 59.973 55.000 0.0 0.0 39.68 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.893727 ACAATGCCGGTCAGGTTTCC 60.894 55.000 1.90 0.00 43.70 3.13
80 81 0.815095 GGAAATTTGTAGGTGGCCGG 59.185 55.000 0.00 0.00 0.00 6.13
83 84 3.655350 ATTTGTAGGTGGCCGGGGC 62.655 63.158 14.65 14.65 41.06 5.80
100 101 2.180204 GCGTGATTGATGGGGACGG 61.180 63.158 0.00 0.00 0.00 4.79
105 106 2.550699 GATTGATGGGGACGGTGCCA 62.551 60.000 20.72 7.11 0.00 4.92
108 109 3.014538 ATGGGGACGGTGCCATCA 61.015 61.111 20.72 10.37 0.00 3.07
154 155 0.030705 TTGAGGGAGAGGAGGGATGG 60.031 60.000 0.00 0.00 0.00 3.51
160 161 0.839853 GAGAGGAGGGATGGATGGGG 60.840 65.000 0.00 0.00 0.00 4.96
187 188 3.044894 AGGGAGAGATCATGGAGTTTCC 58.955 50.000 0.00 0.00 36.96 3.13
200 201 2.695147 GGAGTTTCCTGCAAATATGGGG 59.305 50.000 0.00 0.00 32.53 4.96
441 442 4.207891 TGGAGCACTCACTTATTCCTTC 57.792 45.455 0.00 0.00 0.00 3.46
474 504 3.840078 TGATGAGGACAATTCTCTCCACA 59.160 43.478 0.00 0.00 32.51 4.17
565 743 5.200368 AGTTTCCTTACCAACATTTGCAG 57.800 39.130 0.00 0.00 0.00 4.41
566 744 4.039124 AGTTTCCTTACCAACATTTGCAGG 59.961 41.667 0.00 0.00 0.00 4.85
574 752 4.506758 ACCAACATTTGCAGGCATAATTC 58.493 39.130 0.00 0.00 0.00 2.17
609 787 7.704472 ACTCGTCATCTTCATTCTGAAATACTC 59.296 37.037 0.00 0.00 35.73 2.59
610 788 6.980978 TCGTCATCTTCATTCTGAAATACTCC 59.019 38.462 0.00 0.00 35.73 3.85
612 790 7.050377 GTCATCTTCATTCTGAAATACTCCCA 58.950 38.462 0.00 0.00 35.73 4.37
619 797 3.170717 TCTGAAATACTCCCACCGTCTT 58.829 45.455 0.00 0.00 0.00 3.01
678 856 4.976224 AAAACATCTTACATTACGGGGC 57.024 40.909 0.00 0.00 0.00 5.80
735 916 5.112686 CGCTTACTAAAGGAGCAAGATTCT 58.887 41.667 7.92 0.00 36.22 2.40
785 966 9.394767 TCTAAAACAGTGCATGTATATCATTGT 57.605 29.630 0.00 0.00 43.00 2.71
786 967 9.655769 CTAAAACAGTGCATGTATATCATTGTC 57.344 33.333 0.00 0.00 43.00 3.18
850 1031 2.363038 CACATGCCATTCCCACCTATTG 59.637 50.000 0.00 0.00 0.00 1.90
883 1064 2.035066 GCAGCACCCAATTATTGCCTAG 59.965 50.000 0.00 0.00 36.91 3.02
905 1086 1.492599 CCTTTCCTCTTCCTCCATCCC 59.507 57.143 0.00 0.00 0.00 3.85
962 1152 3.254470 TGACAAACACCAACGAGAGAA 57.746 42.857 0.00 0.00 0.00 2.87
1124 1315 2.573915 GTGAGATCCTTTCCCTCCAAGT 59.426 50.000 0.00 0.00 0.00 3.16
1186 1377 1.751351 TGCTAGAAGACCCTGATGTCG 59.249 52.381 0.00 0.00 40.26 4.35
1402 1593 2.477357 CGCATCAAGCATGTCAAAGAGG 60.477 50.000 0.00 0.00 46.13 3.69
2358 3368 4.629634 GTGATGACCGTGTGTATGAAATGA 59.370 41.667 0.00 0.00 0.00 2.57
2741 3751 4.081862 CGGTGGATAGCGGAAGGATTTATA 60.082 45.833 0.00 0.00 43.63 0.98
2990 4000 1.506493 GGCGACTATCAATCCAGCAG 58.494 55.000 0.00 0.00 0.00 4.24
3061 4071 5.402398 TGTTCGATCTCTGACAGTAACATG 58.598 41.667 1.59 0.00 0.00 3.21
3298 4311 1.145738 ACCAGTGGAAGAGTTGCCAAT 59.854 47.619 18.40 0.00 35.63 3.16
3448 4464 1.826024 CGGTGGAGGATCTTGGGAG 59.174 63.158 0.00 0.00 33.73 4.30
3665 4690 9.273016 CAAGAATTTTATATGGTCGGTGACTAT 57.727 33.333 1.46 1.46 37.50 2.12
3689 4714 3.536956 TTCACGAAAGTTCCAGAGTGT 57.463 42.857 0.00 0.00 46.40 3.55
3800 4825 5.063880 CCAGCTTTACTTCACCTTGTACTT 58.936 41.667 0.00 0.00 0.00 2.24
3978 5012 2.094234 ACGGCAAAAACATATGGCTTCC 60.094 45.455 7.80 0.00 39.74 3.46
4084 5118 1.908340 GCAGAGGCTGTGATCAGGGT 61.908 60.000 16.83 0.00 41.57 4.34
4130 5164 4.481368 TCCCGCAGTTACTATTTGTGAT 57.519 40.909 0.00 0.00 0.00 3.06
4137 5171 7.345192 CGCAGTTACTATTTGTGATGAATACC 58.655 38.462 0.00 0.00 0.00 2.73
4163 5197 4.202161 TGTTCTGAAGAGGACAGTGAAGAC 60.202 45.833 0.00 0.00 32.18 3.01
4165 5199 4.155709 TCTGAAGAGGACAGTGAAGACAT 58.844 43.478 0.00 0.00 36.81 3.06
4167 5201 5.070981 TCTGAAGAGGACAGTGAAGACATTT 59.929 40.000 0.00 0.00 36.81 2.32
4360 5443 5.117745 CGCTAATATATAGGATGATGTGCGC 59.882 44.000 0.00 0.00 0.00 6.09
4479 5619 5.597806 CGATAGTGGTCTGGTTGCTAATTA 58.402 41.667 0.00 0.00 0.00 1.40
4509 5813 7.938563 TTCAATTCCCATTGTTTACTTTTCG 57.061 32.000 0.00 0.00 40.78 3.46
4550 5854 0.776810 TCTGTTTGGGCATCCTGGAA 59.223 50.000 0.00 0.00 0.00 3.53
4636 6034 5.332656 CCGCTCGAGAATTAAGCTATGTTTC 60.333 44.000 18.75 0.00 33.83 2.78
4663 6061 1.793134 GACCGAGGCGTCGTATGGAT 61.793 60.000 25.31 5.51 45.30 3.41
4666 6065 1.201647 CCGAGGCGTCGTATGGATAAT 59.798 52.381 25.31 0.00 45.30 1.28
4672 6071 5.120399 AGGCGTCGTATGGATAATTTTTCA 58.880 37.500 0.00 0.00 0.00 2.69
4721 6120 5.525012 TCAACGCGTCTACTAGCTAGATTAA 59.475 40.000 27.45 8.46 33.82 1.40
4723 6122 4.213059 ACGCGTCTACTAGCTAGATTAACC 59.787 45.833 27.45 9.82 33.82 2.85
4741 6140 1.291877 CCGGTCCTTTTGTGAGCTCG 61.292 60.000 9.64 0.00 0.00 5.03
4745 6144 3.335579 GGTCCTTTTGTGAGCTCGTTAT 58.664 45.455 9.64 0.00 0.00 1.89
4752 6151 2.881074 TGTGAGCTCGTTATCTGAAGC 58.119 47.619 9.64 0.00 0.00 3.86
4767 6166 6.915544 ATCTGAAGCAGTGTACATGTATTG 57.084 37.500 9.18 9.32 32.61 1.90
4775 6174 8.615878 AGCAGTGTACATGTATTGTTTTTCTA 57.384 30.769 9.18 0.00 39.87 2.10
4808 6207 3.119137 TCACACACAGCGCATCTATTAGT 60.119 43.478 11.47 0.00 0.00 2.24
4809 6208 3.000623 CACACACAGCGCATCTATTAGTG 59.999 47.826 11.47 9.00 0.00 2.74
4810 6209 2.033407 CACACAGCGCATCTATTAGTGC 60.033 50.000 11.47 7.69 41.35 4.40
4811 6210 2.204237 CACAGCGCATCTATTAGTGCA 58.796 47.619 11.47 0.00 43.35 4.57
4812 6211 2.033407 CACAGCGCATCTATTAGTGCAC 60.033 50.000 11.47 9.40 43.35 4.57
4813 6212 2.204237 CAGCGCATCTATTAGTGCACA 58.796 47.619 21.04 0.00 43.35 4.57
4814 6213 2.804527 CAGCGCATCTATTAGTGCACAT 59.195 45.455 21.04 7.30 43.35 3.21
4815 6214 2.804527 AGCGCATCTATTAGTGCACATG 59.195 45.455 21.04 13.52 43.35 3.21
4816 6215 2.663879 GCGCATCTATTAGTGCACATGC 60.664 50.000 21.04 21.28 41.32 4.06
4828 6227 2.826277 CACATGCGTGCTACTGACA 58.174 52.632 5.64 0.00 36.06 3.58
4829 6228 1.362768 CACATGCGTGCTACTGACAT 58.637 50.000 5.64 0.00 36.06 3.06
4830 6229 1.061566 CACATGCGTGCTACTGACATG 59.938 52.381 5.64 0.00 42.92 3.21
4832 6231 4.192000 GCGTGCTACTGACATGCT 57.808 55.556 0.00 0.00 44.79 3.79
4833 6232 2.460330 GCGTGCTACTGACATGCTT 58.540 52.632 0.00 0.00 44.79 3.91
4834 6233 0.371645 GCGTGCTACTGACATGCTTC 59.628 55.000 0.00 0.00 44.79 3.86
4835 6234 0.642291 CGTGCTACTGACATGCTTCG 59.358 55.000 0.00 0.00 0.00 3.79
4836 6235 1.714794 GTGCTACTGACATGCTTCGT 58.285 50.000 0.00 0.00 0.00 3.85
4837 6236 2.069273 GTGCTACTGACATGCTTCGTT 58.931 47.619 0.00 0.00 0.00 3.85
4838 6237 2.068519 TGCTACTGACATGCTTCGTTG 58.931 47.619 0.00 0.00 0.00 4.10
4839 6238 1.201965 GCTACTGACATGCTTCGTTGC 60.202 52.381 0.00 0.00 0.00 4.17
4840 6239 2.341257 CTACTGACATGCTTCGTTGCT 58.659 47.619 0.00 0.00 0.00 3.91
4841 6240 1.597742 ACTGACATGCTTCGTTGCTT 58.402 45.000 0.00 0.00 0.00 3.91
4842 6241 1.265095 ACTGACATGCTTCGTTGCTTG 59.735 47.619 13.32 13.32 41.81 4.01
4843 6242 0.592637 TGACATGCTTCGTTGCTTGG 59.407 50.000 16.98 5.62 40.83 3.61
4844 6243 0.874390 GACATGCTTCGTTGCTTGGA 59.126 50.000 16.98 0.00 40.83 3.53
4845 6244 1.266718 GACATGCTTCGTTGCTTGGAA 59.733 47.619 16.98 0.00 40.83 3.53
4846 6245 1.888512 ACATGCTTCGTTGCTTGGAAT 59.111 42.857 16.98 1.19 40.83 3.01
4847 6246 2.256174 CATGCTTCGTTGCTTGGAATG 58.744 47.619 9.20 0.00 35.37 2.67
4848 6247 1.317613 TGCTTCGTTGCTTGGAATGT 58.682 45.000 4.36 0.00 0.00 2.71
4849 6248 1.266718 TGCTTCGTTGCTTGGAATGTC 59.733 47.619 4.36 0.00 0.00 3.06
4850 6249 1.266718 GCTTCGTTGCTTGGAATGTCA 59.733 47.619 0.00 0.00 0.00 3.58
4851 6250 2.095059 GCTTCGTTGCTTGGAATGTCAT 60.095 45.455 0.00 0.00 0.00 3.06
4852 6251 3.495193 CTTCGTTGCTTGGAATGTCATG 58.505 45.455 0.00 0.00 0.00 3.07
4853 6252 1.811965 TCGTTGCTTGGAATGTCATGG 59.188 47.619 0.00 0.00 0.00 3.66
4854 6253 1.541147 CGTTGCTTGGAATGTCATGGT 59.459 47.619 0.00 0.00 0.00 3.55
4855 6254 2.669113 CGTTGCTTGGAATGTCATGGTG 60.669 50.000 0.00 0.00 0.00 4.17
4856 6255 2.557924 GTTGCTTGGAATGTCATGGTGA 59.442 45.455 0.00 0.00 0.00 4.02
4857 6256 3.090210 TGCTTGGAATGTCATGGTGAT 57.910 42.857 0.00 0.00 0.00 3.06
4858 6257 3.433343 TGCTTGGAATGTCATGGTGATT 58.567 40.909 0.00 0.00 0.00 2.57
4859 6258 3.193903 TGCTTGGAATGTCATGGTGATTG 59.806 43.478 0.00 0.00 0.00 2.67
4860 6259 3.429822 GCTTGGAATGTCATGGTGATTGG 60.430 47.826 0.00 0.00 0.00 3.16
4861 6260 3.454719 TGGAATGTCATGGTGATTGGT 57.545 42.857 0.00 0.00 0.00 3.67
4862 6261 3.090790 TGGAATGTCATGGTGATTGGTG 58.909 45.455 0.00 0.00 0.00 4.17
4863 6262 3.245193 TGGAATGTCATGGTGATTGGTGA 60.245 43.478 0.00 0.00 0.00 4.02
4864 6263 3.763360 GGAATGTCATGGTGATTGGTGAA 59.237 43.478 0.00 0.00 0.00 3.18
4865 6264 4.142315 GGAATGTCATGGTGATTGGTGAAG 60.142 45.833 0.00 0.00 0.00 3.02
4866 6265 2.794103 TGTCATGGTGATTGGTGAAGG 58.206 47.619 0.00 0.00 0.00 3.46
4867 6266 2.374839 TGTCATGGTGATTGGTGAAGGA 59.625 45.455 0.00 0.00 0.00 3.36
4868 6267 3.012518 GTCATGGTGATTGGTGAAGGAG 58.987 50.000 0.00 0.00 0.00 3.69
4869 6268 2.912295 TCATGGTGATTGGTGAAGGAGA 59.088 45.455 0.00 0.00 0.00 3.71
4870 6269 3.524789 TCATGGTGATTGGTGAAGGAGAT 59.475 43.478 0.00 0.00 0.00 2.75
4871 6270 3.354948 TGGTGATTGGTGAAGGAGATG 57.645 47.619 0.00 0.00 0.00 2.90
4872 6271 2.644299 TGGTGATTGGTGAAGGAGATGT 59.356 45.455 0.00 0.00 0.00 3.06
4873 6272 3.012518 GGTGATTGGTGAAGGAGATGTG 58.987 50.000 0.00 0.00 0.00 3.21
4874 6273 3.012518 GTGATTGGTGAAGGAGATGTGG 58.987 50.000 0.00 0.00 0.00 4.17
4875 6274 2.912295 TGATTGGTGAAGGAGATGTGGA 59.088 45.455 0.00 0.00 0.00 4.02
4876 6275 3.054875 TGATTGGTGAAGGAGATGTGGAG 60.055 47.826 0.00 0.00 0.00 3.86
4877 6276 0.615331 TGGTGAAGGAGATGTGGAGC 59.385 55.000 0.00 0.00 0.00 4.70
4878 6277 0.908198 GGTGAAGGAGATGTGGAGCT 59.092 55.000 0.00 0.00 0.00 4.09
4879 6278 2.111384 GGTGAAGGAGATGTGGAGCTA 58.889 52.381 0.00 0.00 0.00 3.32
4880 6279 2.159028 GGTGAAGGAGATGTGGAGCTAC 60.159 54.545 0.00 0.00 0.00 3.58
4881 6280 2.763448 GTGAAGGAGATGTGGAGCTACT 59.237 50.000 0.00 0.00 25.75 2.57
4882 6281 3.196685 GTGAAGGAGATGTGGAGCTACTT 59.803 47.826 0.00 0.00 41.76 2.24
4883 6282 4.053469 GAAGGAGATGTGGAGCTACTTC 57.947 50.000 0.00 0.00 45.93 3.01
4884 6283 2.393646 AGGAGATGTGGAGCTACTTCC 58.606 52.381 0.00 0.00 37.77 3.46
4885 6284 1.414550 GGAGATGTGGAGCTACTTCCC 59.585 57.143 0.00 0.00 36.35 3.97
4886 6285 2.393646 GAGATGTGGAGCTACTTCCCT 58.606 52.381 0.00 0.00 36.35 4.20
4887 6286 2.769095 GAGATGTGGAGCTACTTCCCTT 59.231 50.000 0.00 0.00 36.35 3.95
4888 6287 3.185455 AGATGTGGAGCTACTTCCCTTT 58.815 45.455 0.00 0.00 36.35 3.11
4889 6288 2.859165 TGTGGAGCTACTTCCCTTTG 57.141 50.000 0.00 0.00 36.35 2.77
4890 6289 2.054799 TGTGGAGCTACTTCCCTTTGT 58.945 47.619 0.00 0.00 36.35 2.83
4891 6290 2.224523 TGTGGAGCTACTTCCCTTTGTG 60.225 50.000 0.00 0.00 36.35 3.33
4892 6291 1.271379 TGGAGCTACTTCCCTTTGTGC 60.271 52.381 0.00 0.00 36.35 4.57
4893 6292 1.003696 GGAGCTACTTCCCTTTGTGCT 59.996 52.381 0.00 0.00 0.00 4.40
4894 6293 2.553247 GGAGCTACTTCCCTTTGTGCTT 60.553 50.000 0.00 0.00 0.00 3.91
4895 6294 3.149981 GAGCTACTTCCCTTTGTGCTTT 58.850 45.455 0.00 0.00 0.00 3.51
4896 6295 3.149981 AGCTACTTCCCTTTGTGCTTTC 58.850 45.455 0.00 0.00 0.00 2.62
4897 6296 2.884639 GCTACTTCCCTTTGTGCTTTCA 59.115 45.455 0.00 0.00 0.00 2.69
4898 6297 3.057946 GCTACTTCCCTTTGTGCTTTCAG 60.058 47.826 0.00 0.00 0.00 3.02
4899 6298 3.297134 ACTTCCCTTTGTGCTTTCAGA 57.703 42.857 0.00 0.00 0.00 3.27
4900 6299 3.837355 ACTTCCCTTTGTGCTTTCAGAT 58.163 40.909 0.00 0.00 0.00 2.90
4901 6300 4.985538 ACTTCCCTTTGTGCTTTCAGATA 58.014 39.130 0.00 0.00 0.00 1.98
4902 6301 5.006386 ACTTCCCTTTGTGCTTTCAGATAG 58.994 41.667 0.00 0.00 0.00 2.08
4903 6302 4.908601 TCCCTTTGTGCTTTCAGATAGA 57.091 40.909 0.00 0.00 0.00 1.98
4904 6303 4.836825 TCCCTTTGTGCTTTCAGATAGAG 58.163 43.478 0.00 0.00 0.00 2.43
4905 6304 4.532126 TCCCTTTGTGCTTTCAGATAGAGA 59.468 41.667 0.00 0.00 0.00 3.10
4906 6305 4.633565 CCCTTTGTGCTTTCAGATAGAGAC 59.366 45.833 0.00 0.00 0.00 3.36
4907 6306 5.240891 CCTTTGTGCTTTCAGATAGAGACA 58.759 41.667 0.00 0.00 0.00 3.41
4908 6307 5.350914 CCTTTGTGCTTTCAGATAGAGACAG 59.649 44.000 0.00 0.00 0.00 3.51
4909 6308 4.462508 TGTGCTTTCAGATAGAGACAGG 57.537 45.455 0.00 0.00 0.00 4.00
4910 6309 4.089361 TGTGCTTTCAGATAGAGACAGGA 58.911 43.478 0.00 0.00 0.00 3.86
4911 6310 4.528206 TGTGCTTTCAGATAGAGACAGGAA 59.472 41.667 0.00 0.00 0.00 3.36
4912 6311 5.012046 TGTGCTTTCAGATAGAGACAGGAAA 59.988 40.000 0.00 0.00 0.00 3.13
4913 6312 5.934625 GTGCTTTCAGATAGAGACAGGAAAA 59.065 40.000 0.00 0.00 0.00 2.29
4914 6313 6.428159 GTGCTTTCAGATAGAGACAGGAAAAA 59.572 38.462 0.00 0.00 0.00 1.94
4915 6314 6.428159 TGCTTTCAGATAGAGACAGGAAAAAC 59.572 38.462 0.00 0.00 0.00 2.43
4916 6315 6.428159 GCTTTCAGATAGAGACAGGAAAAACA 59.572 38.462 0.00 0.00 0.00 2.83
4917 6316 7.120432 GCTTTCAGATAGAGACAGGAAAAACAT 59.880 37.037 0.00 0.00 0.00 2.71
4918 6317 9.658799 CTTTCAGATAGAGACAGGAAAAACATA 57.341 33.333 0.00 0.00 0.00 2.29
4920 6319 9.605275 TTCAGATAGAGACAGGAAAAACATATG 57.395 33.333 0.00 0.00 0.00 1.78
4921 6320 7.712639 TCAGATAGAGACAGGAAAAACATATGC 59.287 37.037 1.58 0.00 0.00 3.14
4922 6321 7.496920 CAGATAGAGACAGGAAAAACATATGCA 59.503 37.037 1.58 0.00 0.00 3.96
4923 6322 7.714377 AGATAGAGACAGGAAAAACATATGCAG 59.286 37.037 1.58 0.00 0.00 4.41
4924 6323 5.809001 AGAGACAGGAAAAACATATGCAGA 58.191 37.500 1.58 0.00 0.00 4.26
4925 6324 6.240894 AGAGACAGGAAAAACATATGCAGAA 58.759 36.000 1.58 0.00 0.00 3.02
4926 6325 6.716628 AGAGACAGGAAAAACATATGCAGAAA 59.283 34.615 1.58 0.00 0.00 2.52
4927 6326 6.681777 AGACAGGAAAAACATATGCAGAAAC 58.318 36.000 1.58 0.00 0.00 2.78
4928 6327 6.265196 AGACAGGAAAAACATATGCAGAAACA 59.735 34.615 1.58 0.00 0.00 2.83
4929 6328 6.449698 ACAGGAAAAACATATGCAGAAACAG 58.550 36.000 1.58 0.00 0.00 3.16
4930 6329 5.865552 CAGGAAAAACATATGCAGAAACAGG 59.134 40.000 1.58 0.00 0.00 4.00
4931 6330 5.047092 AGGAAAAACATATGCAGAAACAGGG 60.047 40.000 1.58 0.00 0.00 4.45
4932 6331 4.806640 AAAACATATGCAGAAACAGGGG 57.193 40.909 1.58 0.00 0.00 4.79
4933 6332 3.737559 AACATATGCAGAAACAGGGGA 57.262 42.857 1.58 0.00 0.00 4.81
4934 6333 3.004752 ACATATGCAGAAACAGGGGAC 57.995 47.619 1.58 0.00 0.00 4.46
4935 6334 2.308570 ACATATGCAGAAACAGGGGACA 59.691 45.455 1.58 0.00 0.00 4.02
4936 6335 2.489938 TATGCAGAAACAGGGGACAC 57.510 50.000 0.00 0.00 0.00 3.67
4937 6336 0.251341 ATGCAGAAACAGGGGACACC 60.251 55.000 0.00 0.00 40.67 4.16
4947 6346 2.773458 GGGGACACCTCCAAAGAGA 58.227 57.895 0.00 0.00 43.39 3.10
4948 6347 1.064825 GGGGACACCTCCAAAGAGAA 58.935 55.000 0.00 0.00 43.39 2.87
4949 6348 1.003696 GGGGACACCTCCAAAGAGAAG 59.996 57.143 0.00 0.00 43.39 2.85
4950 6349 1.611936 GGGACACCTCCAAAGAGAAGC 60.612 57.143 0.00 0.00 43.39 3.86
4951 6350 1.611936 GGACACCTCCAAAGAGAAGCC 60.612 57.143 0.00 0.00 43.39 4.35
4952 6351 1.072331 GACACCTCCAAAGAGAAGCCA 59.928 52.381 0.00 0.00 43.39 4.75
4953 6352 1.707427 ACACCTCCAAAGAGAAGCCAT 59.293 47.619 0.00 0.00 43.39 4.40
4954 6353 2.290577 ACACCTCCAAAGAGAAGCCATC 60.291 50.000 0.00 0.00 43.39 3.51
4955 6354 2.026449 CACCTCCAAAGAGAAGCCATCT 60.026 50.000 0.00 0.00 43.39 2.90
4965 6364 3.608316 AGAAGCCATCTCTCAACTCAC 57.392 47.619 0.00 0.00 30.46 3.51
4966 6365 2.094286 AGAAGCCATCTCTCAACTCACG 60.094 50.000 0.00 0.00 30.46 4.35
4967 6366 1.261480 AGCCATCTCTCAACTCACGT 58.739 50.000 0.00 0.00 0.00 4.49
4968 6367 1.620819 AGCCATCTCTCAACTCACGTT 59.379 47.619 0.00 0.00 0.00 3.99
4969 6368 2.826128 AGCCATCTCTCAACTCACGTTA 59.174 45.455 0.00 0.00 0.00 3.18
4970 6369 2.924290 GCCATCTCTCAACTCACGTTAC 59.076 50.000 0.00 0.00 0.00 2.50
4971 6370 3.172050 CCATCTCTCAACTCACGTTACG 58.828 50.000 2.19 2.19 0.00 3.18
4972 6371 3.366070 CCATCTCTCAACTCACGTTACGT 60.366 47.826 3.95 3.95 42.36 3.57
4973 6372 3.976793 TCTCTCAACTCACGTTACGTT 57.023 42.857 7.98 0.00 38.32 3.99
4974 6373 3.624900 TCTCTCAACTCACGTTACGTTG 58.375 45.455 7.98 4.14 38.32 4.10
4975 6374 2.121786 TCTCAACTCACGTTACGTTGC 58.878 47.619 7.98 0.00 38.32 4.17
4976 6375 2.124903 CTCAACTCACGTTACGTTGCT 58.875 47.619 7.98 0.00 38.32 3.91
4977 6376 1.855978 TCAACTCACGTTACGTTGCTG 59.144 47.619 7.98 6.22 38.32 4.41
4978 6377 0.580104 AACTCACGTTACGTTGCTGC 59.420 50.000 7.98 0.00 38.32 5.25
4979 6378 0.249322 ACTCACGTTACGTTGCTGCT 60.249 50.000 7.98 0.00 38.32 4.24
4980 6379 0.859232 CTCACGTTACGTTGCTGCTT 59.141 50.000 7.98 0.00 38.32 3.91
4981 6380 0.579630 TCACGTTACGTTGCTGCTTG 59.420 50.000 7.98 0.00 38.32 4.01
4982 6381 0.991770 CACGTTACGTTGCTGCTTGC 60.992 55.000 7.98 0.00 38.32 4.01
4983 6382 1.157870 ACGTTACGTTGCTGCTTGCT 61.158 50.000 3.95 0.00 36.35 3.91
4984 6383 0.041312 CGTTACGTTGCTGCTTGCTT 60.041 50.000 0.00 0.00 43.37 3.91
4985 6384 1.398595 GTTACGTTGCTGCTTGCTTG 58.601 50.000 0.00 0.00 43.37 4.01
4986 6385 0.317770 TTACGTTGCTGCTTGCTTGC 60.318 50.000 0.00 0.00 43.37 4.01
4987 6386 1.165907 TACGTTGCTGCTTGCTTGCT 61.166 50.000 0.00 0.00 43.37 3.91
4988 6387 1.165907 ACGTTGCTGCTTGCTTGCTA 61.166 50.000 0.00 3.18 43.37 3.49
4989 6388 0.040157 CGTTGCTGCTTGCTTGCTAA 60.040 50.000 0.00 3.81 43.37 3.09
4990 6389 1.401931 CGTTGCTGCTTGCTTGCTAAT 60.402 47.619 0.00 0.00 43.37 1.73
4991 6390 2.159531 CGTTGCTGCTTGCTTGCTAATA 60.160 45.455 0.00 0.00 43.37 0.98
4992 6391 3.174375 GTTGCTGCTTGCTTGCTAATAC 58.826 45.455 0.00 3.47 43.37 1.89
4993 6392 2.715046 TGCTGCTTGCTTGCTAATACT 58.285 42.857 0.00 0.00 43.37 2.12
4994 6393 3.872696 TGCTGCTTGCTTGCTAATACTA 58.127 40.909 0.00 0.00 43.37 1.82
4995 6394 3.623060 TGCTGCTTGCTTGCTAATACTAC 59.377 43.478 0.00 0.00 43.37 2.73
4996 6395 3.302740 GCTGCTTGCTTGCTAATACTACG 60.303 47.826 0.00 0.00 38.95 3.51
4997 6396 3.857052 TGCTTGCTTGCTAATACTACGT 58.143 40.909 0.00 0.00 0.00 3.57
4998 6397 5.001237 TGCTTGCTTGCTAATACTACGTA 57.999 39.130 0.00 0.00 0.00 3.57
4999 6398 5.597806 TGCTTGCTTGCTAATACTACGTAT 58.402 37.500 0.00 0.00 0.00 3.06
5000 6399 6.741109 TGCTTGCTTGCTAATACTACGTATA 58.259 36.000 0.00 0.00 0.00 1.47
5001 6400 7.375834 TGCTTGCTTGCTAATACTACGTATAT 58.624 34.615 0.00 0.00 0.00 0.86
5002 6401 8.517056 TGCTTGCTTGCTAATACTACGTATATA 58.483 33.333 0.00 0.00 0.00 0.86
5003 6402 9.517609 GCTTGCTTGCTAATACTACGTATATAT 57.482 33.333 0.00 0.00 0.00 0.86
5046 6445 7.292591 TGGGTTTCCCTTATTCCAAATACAAAA 59.707 33.333 6.38 0.00 45.70 2.44
5050 6449 8.950007 TTCCCTTATTCCAAATACAAAACTCT 57.050 30.769 0.00 0.00 0.00 3.24
5052 6451 7.335924 TCCCTTATTCCAAATACAAAACTCTCG 59.664 37.037 0.00 0.00 0.00 4.04
5059 6458 7.974675 TCCAAATACAAAACTCTCGAATGATC 58.025 34.615 0.00 0.00 0.00 2.92
5060 6459 7.065803 TCCAAATACAAAACTCTCGAATGATCC 59.934 37.037 0.00 0.00 0.00 3.36
5061 6460 7.066284 CCAAATACAAAACTCTCGAATGATCCT 59.934 37.037 0.00 0.00 0.00 3.24
5062 6461 9.098355 CAAATACAAAACTCTCGAATGATCCTA 57.902 33.333 0.00 0.00 0.00 2.94
5063 6462 8.649973 AATACAAAACTCTCGAATGATCCTAC 57.350 34.615 0.00 0.00 0.00 3.18
5064 6463 6.287589 ACAAAACTCTCGAATGATCCTACT 57.712 37.500 0.00 0.00 0.00 2.57
5065 6464 6.102663 ACAAAACTCTCGAATGATCCTACTG 58.897 40.000 0.00 0.00 0.00 2.74
5066 6465 4.314740 AACTCTCGAATGATCCTACTGC 57.685 45.455 0.00 0.00 0.00 4.40
5067 6466 3.291584 ACTCTCGAATGATCCTACTGCA 58.708 45.455 0.00 0.00 0.00 4.41
5068 6467 3.701542 ACTCTCGAATGATCCTACTGCAA 59.298 43.478 0.00 0.00 0.00 4.08
5069 6468 4.343526 ACTCTCGAATGATCCTACTGCAAT 59.656 41.667 0.00 0.00 0.00 3.56
5070 6469 4.876125 TCTCGAATGATCCTACTGCAATC 58.124 43.478 0.00 0.00 0.00 2.67
5071 6470 4.342092 TCTCGAATGATCCTACTGCAATCA 59.658 41.667 0.69 0.69 34.17 2.57
5072 6471 4.625028 TCGAATGATCCTACTGCAATCAG 58.375 43.478 4.48 0.00 45.71 2.90
5101 6500 5.162794 TGAAACACAGATAAACATGCATGC 58.837 37.500 26.53 11.82 0.00 4.06
5102 6501 3.788333 ACACAGATAAACATGCATGCC 57.212 42.857 26.53 10.51 0.00 4.40
5103 6502 3.359033 ACACAGATAAACATGCATGCCT 58.641 40.909 26.53 15.70 0.00 4.75
5104 6503 3.129813 ACACAGATAAACATGCATGCCTG 59.870 43.478 26.53 23.30 0.00 4.85
5131 6530 2.036958 TGCTGCGGCATAAATACAGT 57.963 45.000 18.37 0.00 44.28 3.55
5132 6531 3.186702 TGCTGCGGCATAAATACAGTA 57.813 42.857 18.37 0.00 44.28 2.74
5133 6532 3.536570 TGCTGCGGCATAAATACAGTAA 58.463 40.909 18.37 0.00 44.28 2.24
5134 6533 3.311322 TGCTGCGGCATAAATACAGTAAC 59.689 43.478 18.37 0.00 44.28 2.50
5135 6534 3.560068 GCTGCGGCATAAATACAGTAACT 59.440 43.478 14.08 0.00 38.54 2.24
5136 6535 4.552767 GCTGCGGCATAAATACAGTAACTG 60.553 45.833 14.08 0.00 38.54 3.16
5137 6536 4.760878 TGCGGCATAAATACAGTAACTGA 58.239 39.130 0.00 0.00 35.18 3.41
5138 6537 5.179533 TGCGGCATAAATACAGTAACTGAA 58.820 37.500 0.00 0.00 35.18 3.02
5139 6538 5.293324 TGCGGCATAAATACAGTAACTGAAG 59.707 40.000 0.00 0.00 35.18 3.02
5140 6539 5.522460 GCGGCATAAATACAGTAACTGAAGA 59.478 40.000 0.00 0.00 35.18 2.87
5141 6540 6.202954 GCGGCATAAATACAGTAACTGAAGAT 59.797 38.462 0.00 0.00 35.18 2.40
5142 6541 7.567571 CGGCATAAATACAGTAACTGAAGATG 58.432 38.462 0.00 0.00 35.18 2.90
5143 6542 7.438160 CGGCATAAATACAGTAACTGAAGATGA 59.562 37.037 0.00 0.00 35.18 2.92
5144 6543 9.109393 GGCATAAATACAGTAACTGAAGATGAA 57.891 33.333 0.00 0.00 35.18 2.57
5150 6549 8.873215 ATACAGTAACTGAAGATGAATTACCG 57.127 34.615 0.00 0.00 35.18 4.02
5151 6550 6.698380 ACAGTAACTGAAGATGAATTACCGT 58.302 36.000 0.00 0.00 35.18 4.83
5152 6551 7.159372 ACAGTAACTGAAGATGAATTACCGTT 58.841 34.615 0.00 0.00 35.18 4.44
5153 6552 7.660208 ACAGTAACTGAAGATGAATTACCGTTT 59.340 33.333 0.00 0.00 35.18 3.60
5154 6553 7.957484 CAGTAACTGAAGATGAATTACCGTTTG 59.043 37.037 0.00 0.00 32.44 2.93
5155 6554 5.880054 ACTGAAGATGAATTACCGTTTGG 57.120 39.130 0.00 0.00 42.84 3.28
5166 6565 4.639171 CGTTTGGTTGGCGGGCAC 62.639 66.667 2.73 0.00 0.00 5.01
5179 6578 2.667199 GGCACCCAAACGTACGCT 60.667 61.111 16.72 0.00 0.00 5.07
5180 6579 2.554272 GCACCCAAACGTACGCTG 59.446 61.111 16.72 12.92 0.00 5.18
5181 6580 2.554272 CACCCAAACGTACGCTGC 59.446 61.111 16.72 0.00 0.00 5.25
5182 6581 2.109387 ACCCAAACGTACGCTGCA 59.891 55.556 16.72 0.00 0.00 4.41
5183 6582 1.959226 ACCCAAACGTACGCTGCAG 60.959 57.895 16.72 10.11 0.00 4.41
5184 6583 2.677003 CCCAAACGTACGCTGCAGG 61.677 63.158 16.72 10.27 0.00 4.85
5185 6584 2.173382 CAAACGTACGCTGCAGGC 59.827 61.111 16.72 6.97 37.64 4.85
5211 6610 4.445545 GCGCCGCCGAGAACTTTG 62.446 66.667 0.00 0.00 36.29 2.77
5212 6611 4.445545 CGCCGCCGAGAACTTTGC 62.446 66.667 0.00 0.00 36.29 3.68
5213 6612 4.103103 GCCGCCGAGAACTTTGCC 62.103 66.667 0.00 0.00 0.00 4.52
5214 6613 2.358737 CCGCCGAGAACTTTGCCT 60.359 61.111 0.00 0.00 0.00 4.75
5215 6614 2.391389 CCGCCGAGAACTTTGCCTC 61.391 63.158 0.00 0.00 0.00 4.70
5216 6615 2.391389 CGCCGAGAACTTTGCCTCC 61.391 63.158 0.00 0.00 0.00 4.30
5217 6616 1.302511 GCCGAGAACTTTGCCTCCA 60.303 57.895 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.823899 GTCCCCATCAATCACGCCC 60.824 63.158 0.00 0.00 0.00 6.13
83 84 1.089481 CACCGTCCCCATCAATCACG 61.089 60.000 0.00 0.00 0.00 4.35
87 88 1.936767 ATGGCACCGTCCCCATCAAT 61.937 55.000 0.00 0.00 37.24 2.57
100 101 1.001641 ACCTCAAGGCTGATGGCAC 60.002 57.895 0.00 0.00 44.01 5.01
105 106 0.252881 TCCTCCACCTCAAGGCTGAT 60.253 55.000 0.00 0.00 39.32 2.90
108 109 1.614824 CCTCCTCCACCTCAAGGCT 60.615 63.158 0.00 0.00 39.32 4.58
154 155 1.916181 TCTCTCCCTTTCAACCCCATC 59.084 52.381 0.00 0.00 0.00 3.51
160 161 4.080638 ACTCCATGATCTCTCCCTTTCAAC 60.081 45.833 0.00 0.00 0.00 3.18
187 188 1.737355 CGCCACCCCCATATTTGCAG 61.737 60.000 0.00 0.00 0.00 4.41
200 201 2.050442 CAAAAAGACGCCGCCACC 60.050 61.111 0.00 0.00 0.00 4.61
361 362 1.336240 GGTCCAGCATGTTGAAAGCAC 60.336 52.381 11.60 0.00 0.00 4.40
441 442 2.235650 TGTCCTCATCAGAGCAAGAAGG 59.764 50.000 0.00 0.00 40.68 3.46
474 504 6.046593 CACAATATACGTACTGTGTGGGAAT 58.953 40.000 19.34 0.00 35.52 3.01
548 726 1.617850 TGCCTGCAAATGTTGGTAAGG 59.382 47.619 0.00 0.00 0.00 2.69
550 728 5.674052 ATTATGCCTGCAAATGTTGGTAA 57.326 34.783 0.00 0.00 0.00 2.85
565 743 6.806249 TGACGAGTTTTCAAATGAATTATGCC 59.194 34.615 0.00 0.00 33.54 4.40
566 744 7.795431 TGACGAGTTTTCAAATGAATTATGC 57.205 32.000 0.00 0.00 33.54 3.14
574 752 8.019669 AGAATGAAGATGACGAGTTTTCAAATG 58.980 33.333 0.00 0.00 32.21 2.32
609 787 5.587388 TTCTTACACTATAAGACGGTGGG 57.413 43.478 0.00 0.00 33.73 4.61
610 788 8.488651 AAAATTCTTACACTATAAGACGGTGG 57.511 34.615 0.00 0.00 33.73 4.61
678 856 6.712179 ACTTATTAAGAAGTACTCCCTCCG 57.288 41.667 13.67 0.00 37.90 4.63
735 916 0.681733 GAGTGCACAGAGGGACAGAA 59.318 55.000 21.04 0.00 0.00 3.02
784 965 2.166459 TCATGAGTGGATCAAGGACGAC 59.834 50.000 0.00 0.00 42.53 4.34
785 966 2.456577 TCATGAGTGGATCAAGGACGA 58.543 47.619 0.00 0.00 42.53 4.20
786 967 2.967599 TCATGAGTGGATCAAGGACG 57.032 50.000 0.00 0.00 42.53 4.79
883 1064 2.171659 GGATGGAGGAAGAGGAAAGGAC 59.828 54.545 0.00 0.00 0.00 3.85
905 1086 1.609501 TGGAGACGGAGAAGTGGGG 60.610 63.158 0.00 0.00 0.00 4.96
962 1152 2.625314 TCTGCTAGCTATGATGCTCGTT 59.375 45.455 17.23 0.00 42.97 3.85
1186 1377 2.922758 GCGATATCCACGTCATCACCTC 60.923 54.545 0.00 0.00 0.00 3.85
1402 1593 4.757149 ACTCAGCTTGTAACAATCCTTGAC 59.243 41.667 0.00 0.00 0.00 3.18
2074 2981 7.903995 ACTACACAAGTCTACTAGTACTCAC 57.096 40.000 0.00 0.00 30.33 3.51
2358 3368 3.618690 GTGAAGATCACTTAGGGCTGT 57.381 47.619 3.31 0.00 43.73 4.40
2741 3751 2.693069 CTTTGTCCACGCTCTTCAGAT 58.307 47.619 0.00 0.00 0.00 2.90
2782 3792 9.719355 TTTTGTTGACAAGCTCATAGAAGTATA 57.281 29.630 0.00 0.00 37.15 1.47
2990 4000 8.454106 AGTAAATGTACAAGCTCAACATCAATC 58.546 33.333 0.00 2.67 32.80 2.67
2997 4007 4.151689 TGCGAGTAAATGTACAAGCTCAAC 59.848 41.667 0.00 1.95 36.47 3.18
2998 4008 4.151689 GTGCGAGTAAATGTACAAGCTCAA 59.848 41.667 0.00 0.00 36.47 3.02
3061 4071 1.064060 AGTGTTTGACGCAAGCTGAAC 59.936 47.619 0.00 0.00 45.62 3.18
3298 4311 0.391661 GGTCAGCTGAGCGAATCCAA 60.392 55.000 28.44 0.00 32.58 3.53
3448 4464 2.677875 CCTCCAAACCTGGCAGGC 60.678 66.667 33.04 0.00 43.17 4.85
3497 4513 0.803768 CATGCCTCCTGAACTCGTCG 60.804 60.000 0.00 0.00 0.00 5.12
3665 4690 4.094294 CACTCTGGAACTTTCGTGAAACAA 59.906 41.667 0.00 0.00 35.74 2.83
3800 4825 5.935945 TCATCAGGTCTTGTTCTAAACCAA 58.064 37.500 0.00 0.00 34.09 3.67
3935 4966 6.857964 CCGTTGATACATTGATAAGCAAATCC 59.142 38.462 0.00 0.00 40.48 3.01
3978 5012 4.337274 TGTGAGATGCTCAATGCCTAAATG 59.663 41.667 0.00 0.00 42.46 2.32
4075 5109 1.067295 ACCTGCTTCAACCCTGATCA 58.933 50.000 0.00 0.00 0.00 2.92
4130 5164 4.838423 TCCTCTTCAGAACACTGGTATTCA 59.162 41.667 0.00 0.00 33.04 2.57
4137 5171 3.068732 TCACTGTCCTCTTCAGAACACTG 59.931 47.826 0.00 0.00 36.81 3.66
4163 5197 5.168526 TCTTTTTCTCGTCACCACAAATG 57.831 39.130 0.00 0.00 0.00 2.32
4165 5199 3.064820 GCTCTTTTTCTCGTCACCACAAA 59.935 43.478 0.00 0.00 0.00 2.83
4167 5201 2.210116 GCTCTTTTTCTCGTCACCACA 58.790 47.619 0.00 0.00 0.00 4.17
4235 5269 0.830648 TGGTGATGAGGATCGTTCCC 59.169 55.000 8.95 1.97 43.76 3.97
4340 5423 5.819379 CCAAGCGCACATCATCCTATATATT 59.181 40.000 11.47 0.00 0.00 1.28
4360 5443 1.351017 TCTCCAAGTAACCCAGCCAAG 59.649 52.381 0.00 0.00 0.00 3.61
4453 5592 0.249120 CAACCAGACCACTATCGCCA 59.751 55.000 0.00 0.00 0.00 5.69
4479 5619 8.650143 AGTAAACAATGGGAATTGAATGTAGT 57.350 30.769 5.49 0.00 35.60 2.73
4550 5854 8.216423 AGAGTATTCAGCAGAAATAATCCACAT 58.784 33.333 0.00 0.00 37.29 3.21
4612 6006 3.643763 ACATAGCTTAATTCTCGAGCGG 58.356 45.455 7.81 0.00 41.19 5.52
4636 6034 2.824041 CGCCTCGGTCCCAAATGG 60.824 66.667 0.00 0.00 0.00 3.16
4649 6047 5.007332 GTGAAAAATTATCCATACGACGCCT 59.993 40.000 0.00 0.00 0.00 5.52
4701 6100 4.666149 CGGTTAATCTAGCTAGTAGACGCG 60.666 50.000 20.10 3.53 40.76 6.01
4721 6120 0.250338 GAGCTCACAAAAGGACCGGT 60.250 55.000 6.92 6.92 0.00 5.28
4723 6122 0.600255 ACGAGCTCACAAAAGGACCG 60.600 55.000 15.40 0.00 0.00 4.79
4741 6140 8.331022 CAATACATGTACACTGCTTCAGATAAC 58.669 37.037 7.96 0.00 35.18 1.89
4745 6144 5.793817 ACAATACATGTACACTGCTTCAGA 58.206 37.500 7.96 0.00 41.63 3.27
4775 6174 4.539870 CGCTGTGTGTGAAAATCAAATCT 58.460 39.130 0.00 0.00 0.00 2.40
4785 6184 2.385013 ATAGATGCGCTGTGTGTGAA 57.615 45.000 9.73 0.00 0.00 3.18
4786 6185 2.385013 AATAGATGCGCTGTGTGTGA 57.615 45.000 9.73 0.00 0.00 3.58
4787 6186 3.000623 CACTAATAGATGCGCTGTGTGTG 59.999 47.826 9.73 4.08 0.00 3.82
4811 6210 1.362768 CATGTCAGTAGCACGCATGT 58.637 50.000 0.00 0.00 34.10 3.21
4812 6211 0.027194 GCATGTCAGTAGCACGCATG 59.973 55.000 0.00 0.00 39.68 4.06
4813 6212 0.107993 AGCATGTCAGTAGCACGCAT 60.108 50.000 0.00 0.00 0.00 4.73
4814 6213 0.320683 AAGCATGTCAGTAGCACGCA 60.321 50.000 0.00 0.00 0.00 5.24
4815 6214 0.371645 GAAGCATGTCAGTAGCACGC 59.628 55.000 0.00 0.00 0.00 5.34
4816 6215 0.642291 CGAAGCATGTCAGTAGCACG 59.358 55.000 0.00 0.00 0.00 5.34
4820 6219 2.341257 AGCAACGAAGCATGTCAGTAG 58.659 47.619 6.62 0.00 36.85 2.57
4821 6220 2.455674 AGCAACGAAGCATGTCAGTA 57.544 45.000 6.62 0.00 36.85 2.74
4822 6221 1.265095 CAAGCAACGAAGCATGTCAGT 59.735 47.619 6.62 0.00 36.85 3.41
4823 6222 1.400629 CCAAGCAACGAAGCATGTCAG 60.401 52.381 6.62 0.00 36.85 3.51
4824 6223 0.592637 CCAAGCAACGAAGCATGTCA 59.407 50.000 6.62 0.00 36.85 3.58
4825 6224 0.874390 TCCAAGCAACGAAGCATGTC 59.126 50.000 6.62 0.00 36.85 3.06
4826 6225 1.317613 TTCCAAGCAACGAAGCATGT 58.682 45.000 6.62 0.00 36.85 3.21
4827 6226 2.256174 CATTCCAAGCAACGAAGCATG 58.744 47.619 6.62 4.69 36.85 4.06
4828 6227 1.888512 ACATTCCAAGCAACGAAGCAT 59.111 42.857 6.62 0.00 36.85 3.79
4829 6228 1.266718 GACATTCCAAGCAACGAAGCA 59.733 47.619 6.62 0.00 36.85 3.91
4830 6229 1.266718 TGACATTCCAAGCAACGAAGC 59.733 47.619 0.00 0.00 0.00 3.86
4831 6230 3.495193 CATGACATTCCAAGCAACGAAG 58.505 45.455 0.00 0.00 0.00 3.79
4832 6231 2.228582 CCATGACATTCCAAGCAACGAA 59.771 45.455 0.00 0.00 0.00 3.85
4833 6232 1.811965 CCATGACATTCCAAGCAACGA 59.188 47.619 0.00 0.00 0.00 3.85
4834 6233 1.541147 ACCATGACATTCCAAGCAACG 59.459 47.619 0.00 0.00 0.00 4.10
4835 6234 2.557924 TCACCATGACATTCCAAGCAAC 59.442 45.455 0.00 0.00 0.00 4.17
4836 6235 2.874014 TCACCATGACATTCCAAGCAA 58.126 42.857 0.00 0.00 0.00 3.91
4837 6236 2.583024 TCACCATGACATTCCAAGCA 57.417 45.000 0.00 0.00 0.00 3.91
4838 6237 3.429822 CCAATCACCATGACATTCCAAGC 60.430 47.826 0.00 0.00 0.00 4.01
4839 6238 3.765511 ACCAATCACCATGACATTCCAAG 59.234 43.478 0.00 0.00 0.00 3.61
4840 6239 3.510753 CACCAATCACCATGACATTCCAA 59.489 43.478 0.00 0.00 0.00 3.53
4841 6240 3.090790 CACCAATCACCATGACATTCCA 58.909 45.455 0.00 0.00 0.00 3.53
4842 6241 3.355378 TCACCAATCACCATGACATTCC 58.645 45.455 0.00 0.00 0.00 3.01
4843 6242 4.142315 CCTTCACCAATCACCATGACATTC 60.142 45.833 0.00 0.00 0.00 2.67
4844 6243 3.765511 CCTTCACCAATCACCATGACATT 59.234 43.478 0.00 0.00 0.00 2.71
4845 6244 3.010472 TCCTTCACCAATCACCATGACAT 59.990 43.478 0.00 0.00 0.00 3.06
4846 6245 2.374839 TCCTTCACCAATCACCATGACA 59.625 45.455 0.00 0.00 0.00 3.58
4847 6246 3.012518 CTCCTTCACCAATCACCATGAC 58.987 50.000 0.00 0.00 0.00 3.06
4848 6247 2.912295 TCTCCTTCACCAATCACCATGA 59.088 45.455 0.00 0.00 0.00 3.07
4849 6248 3.354948 TCTCCTTCACCAATCACCATG 57.645 47.619 0.00 0.00 0.00 3.66
4850 6249 3.267812 ACATCTCCTTCACCAATCACCAT 59.732 43.478 0.00 0.00 0.00 3.55
4851 6250 2.644299 ACATCTCCTTCACCAATCACCA 59.356 45.455 0.00 0.00 0.00 4.17
4852 6251 3.012518 CACATCTCCTTCACCAATCACC 58.987 50.000 0.00 0.00 0.00 4.02
4853 6252 3.012518 CCACATCTCCTTCACCAATCAC 58.987 50.000 0.00 0.00 0.00 3.06
4854 6253 2.912295 TCCACATCTCCTTCACCAATCA 59.088 45.455 0.00 0.00 0.00 2.57
4855 6254 3.539604 CTCCACATCTCCTTCACCAATC 58.460 50.000 0.00 0.00 0.00 2.67
4856 6255 2.356535 GCTCCACATCTCCTTCACCAAT 60.357 50.000 0.00 0.00 0.00 3.16
4857 6256 1.003580 GCTCCACATCTCCTTCACCAA 59.996 52.381 0.00 0.00 0.00 3.67
4858 6257 0.615331 GCTCCACATCTCCTTCACCA 59.385 55.000 0.00 0.00 0.00 4.17
4859 6258 0.908198 AGCTCCACATCTCCTTCACC 59.092 55.000 0.00 0.00 0.00 4.02
4860 6259 2.763448 AGTAGCTCCACATCTCCTTCAC 59.237 50.000 0.00 0.00 0.00 3.18
4861 6260 3.107402 AGTAGCTCCACATCTCCTTCA 57.893 47.619 0.00 0.00 0.00 3.02
4862 6261 3.181470 GGAAGTAGCTCCACATCTCCTTC 60.181 52.174 0.00 0.00 35.36 3.46
4863 6262 2.769095 GGAAGTAGCTCCACATCTCCTT 59.231 50.000 0.00 0.00 35.36 3.36
4864 6263 2.393646 GGAAGTAGCTCCACATCTCCT 58.606 52.381 0.00 0.00 35.36 3.69
4865 6264 1.414550 GGGAAGTAGCTCCACATCTCC 59.585 57.143 0.00 0.00 37.20 3.71
4866 6265 2.393646 AGGGAAGTAGCTCCACATCTC 58.606 52.381 0.00 0.00 37.20 2.75
4867 6266 2.559381 AGGGAAGTAGCTCCACATCT 57.441 50.000 0.00 0.00 37.20 2.90
4868 6267 3.274288 CAAAGGGAAGTAGCTCCACATC 58.726 50.000 0.00 0.00 37.20 3.06
4869 6268 2.644798 ACAAAGGGAAGTAGCTCCACAT 59.355 45.455 0.00 0.00 37.20 3.21
4870 6269 2.054799 ACAAAGGGAAGTAGCTCCACA 58.945 47.619 0.00 0.00 37.20 4.17
4871 6270 2.427506 CACAAAGGGAAGTAGCTCCAC 58.572 52.381 0.00 0.00 37.20 4.02
4872 6271 1.271379 GCACAAAGGGAAGTAGCTCCA 60.271 52.381 0.00 0.00 37.20 3.86
4873 6272 1.003696 AGCACAAAGGGAAGTAGCTCC 59.996 52.381 0.00 0.00 34.41 4.70
4874 6273 2.481289 AGCACAAAGGGAAGTAGCTC 57.519 50.000 0.00 0.00 0.00 4.09
4875 6274 2.959465 AAGCACAAAGGGAAGTAGCT 57.041 45.000 0.00 0.00 0.00 3.32
4876 6275 2.884639 TGAAAGCACAAAGGGAAGTAGC 59.115 45.455 0.00 0.00 0.00 3.58
4877 6276 4.389374 TCTGAAAGCACAAAGGGAAGTAG 58.611 43.478 0.00 0.00 0.00 2.57
4878 6277 4.431416 TCTGAAAGCACAAAGGGAAGTA 57.569 40.909 0.00 0.00 0.00 2.24
4879 6278 3.297134 TCTGAAAGCACAAAGGGAAGT 57.703 42.857 0.00 0.00 0.00 3.01
4880 6279 5.248640 TCTATCTGAAAGCACAAAGGGAAG 58.751 41.667 0.00 0.00 0.00 3.46
4881 6280 5.013079 TCTCTATCTGAAAGCACAAAGGGAA 59.987 40.000 0.00 0.00 0.00 3.97
4882 6281 4.532126 TCTCTATCTGAAAGCACAAAGGGA 59.468 41.667 0.00 0.00 0.00 4.20
4883 6282 4.633565 GTCTCTATCTGAAAGCACAAAGGG 59.366 45.833 0.00 0.00 0.00 3.95
4884 6283 5.240891 TGTCTCTATCTGAAAGCACAAAGG 58.759 41.667 0.00 0.00 0.00 3.11
4885 6284 5.350914 CCTGTCTCTATCTGAAAGCACAAAG 59.649 44.000 0.00 0.00 0.00 2.77
4886 6285 5.012046 TCCTGTCTCTATCTGAAAGCACAAA 59.988 40.000 0.00 0.00 0.00 2.83
4887 6286 4.528206 TCCTGTCTCTATCTGAAAGCACAA 59.472 41.667 0.00 0.00 0.00 3.33
4888 6287 4.089361 TCCTGTCTCTATCTGAAAGCACA 58.911 43.478 0.00 0.00 0.00 4.57
4889 6288 4.727507 TCCTGTCTCTATCTGAAAGCAC 57.272 45.455 0.00 0.00 0.00 4.40
4890 6289 5.745312 TTTCCTGTCTCTATCTGAAAGCA 57.255 39.130 0.00 0.00 0.00 3.91
4891 6290 6.428159 TGTTTTTCCTGTCTCTATCTGAAAGC 59.572 38.462 0.00 0.00 0.00 3.51
4892 6291 7.969536 TGTTTTTCCTGTCTCTATCTGAAAG 57.030 36.000 0.00 0.00 0.00 2.62
4894 6293 9.605275 CATATGTTTTTCCTGTCTCTATCTGAA 57.395 33.333 0.00 0.00 0.00 3.02
4895 6294 7.712639 GCATATGTTTTTCCTGTCTCTATCTGA 59.287 37.037 4.29 0.00 0.00 3.27
4896 6295 7.496920 TGCATATGTTTTTCCTGTCTCTATCTG 59.503 37.037 4.29 0.00 0.00 2.90
4897 6296 7.568349 TGCATATGTTTTTCCTGTCTCTATCT 58.432 34.615 4.29 0.00 0.00 1.98
4898 6297 7.712639 TCTGCATATGTTTTTCCTGTCTCTATC 59.287 37.037 4.29 0.00 0.00 2.08
4899 6298 7.568349 TCTGCATATGTTTTTCCTGTCTCTAT 58.432 34.615 4.29 0.00 0.00 1.98
4900 6299 6.946340 TCTGCATATGTTTTTCCTGTCTCTA 58.054 36.000 4.29 0.00 0.00 2.43
4901 6300 5.809001 TCTGCATATGTTTTTCCTGTCTCT 58.191 37.500 4.29 0.00 0.00 3.10
4902 6301 6.500684 TTCTGCATATGTTTTTCCTGTCTC 57.499 37.500 4.29 0.00 0.00 3.36
4903 6302 6.265196 TGTTTCTGCATATGTTTTTCCTGTCT 59.735 34.615 4.29 0.00 0.00 3.41
4904 6303 6.446318 TGTTTCTGCATATGTTTTTCCTGTC 58.554 36.000 4.29 0.00 0.00 3.51
4905 6304 6.403866 TGTTTCTGCATATGTTTTTCCTGT 57.596 33.333 4.29 0.00 0.00 4.00
4906 6305 5.865552 CCTGTTTCTGCATATGTTTTTCCTG 59.134 40.000 4.29 0.00 0.00 3.86
4907 6306 5.047092 CCCTGTTTCTGCATATGTTTTTCCT 60.047 40.000 4.29 0.00 0.00 3.36
4908 6307 5.170748 CCCTGTTTCTGCATATGTTTTTCC 58.829 41.667 4.29 0.00 0.00 3.13
4909 6308 5.047377 TCCCCTGTTTCTGCATATGTTTTTC 60.047 40.000 4.29 0.00 0.00 2.29
4910 6309 4.837860 TCCCCTGTTTCTGCATATGTTTTT 59.162 37.500 4.29 0.00 0.00 1.94
4911 6310 4.220602 GTCCCCTGTTTCTGCATATGTTTT 59.779 41.667 4.29 0.00 0.00 2.43
4912 6311 3.763897 GTCCCCTGTTTCTGCATATGTTT 59.236 43.478 4.29 0.00 0.00 2.83
4913 6312 3.245229 TGTCCCCTGTTTCTGCATATGTT 60.245 43.478 4.29 0.00 0.00 2.71
4914 6313 2.308570 TGTCCCCTGTTTCTGCATATGT 59.691 45.455 4.29 0.00 0.00 2.29
4915 6314 2.684881 GTGTCCCCTGTTTCTGCATATG 59.315 50.000 0.00 0.00 0.00 1.78
4916 6315 2.357154 GGTGTCCCCTGTTTCTGCATAT 60.357 50.000 0.00 0.00 0.00 1.78
4917 6316 1.004277 GGTGTCCCCTGTTTCTGCATA 59.996 52.381 0.00 0.00 0.00 3.14
4918 6317 0.251341 GGTGTCCCCTGTTTCTGCAT 60.251 55.000 0.00 0.00 0.00 3.96
4919 6318 1.150536 GGTGTCCCCTGTTTCTGCA 59.849 57.895 0.00 0.00 0.00 4.41
4920 6319 0.606673 GAGGTGTCCCCTGTTTCTGC 60.607 60.000 0.00 0.00 46.51 4.26
4921 6320 0.036875 GGAGGTGTCCCCTGTTTCTG 59.963 60.000 0.00 0.00 46.51 3.02
4922 6321 0.401395 TGGAGGTGTCCCCTGTTTCT 60.401 55.000 0.00 0.00 46.51 2.52
4923 6322 0.476771 TTGGAGGTGTCCCCTGTTTC 59.523 55.000 0.00 0.00 46.51 2.78
4924 6323 0.930726 TTTGGAGGTGTCCCCTGTTT 59.069 50.000 0.00 0.00 46.51 2.83
4925 6324 0.478507 CTTTGGAGGTGTCCCCTGTT 59.521 55.000 0.00 0.00 46.51 3.16
4926 6325 0.401395 TCTTTGGAGGTGTCCCCTGT 60.401 55.000 0.00 0.00 46.51 4.00
4927 6326 0.326264 CTCTTTGGAGGTGTCCCCTG 59.674 60.000 0.00 0.00 46.51 4.45
4929 6328 1.003696 CTTCTCTTTGGAGGTGTCCCC 59.996 57.143 0.00 0.00 43.15 4.81
4930 6329 1.611936 GCTTCTCTTTGGAGGTGTCCC 60.612 57.143 0.00 0.00 43.15 4.46
4931 6330 1.611936 GGCTTCTCTTTGGAGGTGTCC 60.612 57.143 0.00 0.00 44.24 4.02
4932 6331 1.072331 TGGCTTCTCTTTGGAGGTGTC 59.928 52.381 0.00 0.00 39.86 3.67
4933 6332 1.140312 TGGCTTCTCTTTGGAGGTGT 58.860 50.000 0.00 0.00 39.86 4.16
4934 6333 2.026449 AGATGGCTTCTCTTTGGAGGTG 60.026 50.000 0.00 0.00 39.86 4.00
4935 6334 2.238395 GAGATGGCTTCTCTTTGGAGGT 59.762 50.000 19.91 0.00 46.33 3.85
4936 6335 2.916640 GAGATGGCTTCTCTTTGGAGG 58.083 52.381 19.91 0.00 46.33 4.30
4945 6344 2.094286 CGTGAGTTGAGAGATGGCTTCT 60.094 50.000 2.05 2.05 37.41 2.85
4946 6345 2.266554 CGTGAGTTGAGAGATGGCTTC 58.733 52.381 0.00 0.00 0.00 3.86
4947 6346 1.620819 ACGTGAGTTGAGAGATGGCTT 59.379 47.619 0.00 0.00 46.40 4.35
4948 6347 1.261480 ACGTGAGTTGAGAGATGGCT 58.739 50.000 0.00 0.00 46.40 4.75
4949 6348 3.822607 ACGTGAGTTGAGAGATGGC 57.177 52.632 0.00 0.00 46.40 4.40
4961 6360 0.859232 AAGCAGCAACGTAACGTGAG 59.141 50.000 0.00 0.00 39.99 3.51
4962 6361 0.579630 CAAGCAGCAACGTAACGTGA 59.420 50.000 0.00 0.00 39.99 4.35
4963 6362 0.991770 GCAAGCAGCAACGTAACGTG 60.992 55.000 0.00 0.00 44.79 4.49
4964 6363 1.278637 GCAAGCAGCAACGTAACGT 59.721 52.632 0.00 0.00 44.79 3.99
4965 6364 4.115287 GCAAGCAGCAACGTAACG 57.885 55.556 0.00 0.00 44.79 3.18
4973 6372 8.774605 TACGTAGTATTAGCAAGCAAGCAGCA 62.775 42.308 11.14 0.00 45.24 4.41
4974 6373 3.302740 CGTAGTATTAGCAAGCAAGCAGC 60.303 47.826 3.19 0.00 46.19 5.25
4975 6374 3.865745 ACGTAGTATTAGCAAGCAAGCAG 59.134 43.478 3.19 0.00 41.94 4.24
4976 6375 3.857052 ACGTAGTATTAGCAAGCAAGCA 58.143 40.909 3.19 0.00 41.94 3.91
4994 6393 9.502091 AGCACCATTTTTCATACATATATACGT 57.498 29.630 0.00 0.00 0.00 3.57
4995 6394 9.759259 CAGCACCATTTTTCATACATATATACG 57.241 33.333 0.00 0.00 0.00 3.06
4997 6396 9.241919 CCCAGCACCATTTTTCATACATATATA 57.758 33.333 0.00 0.00 0.00 0.86
4998 6397 7.729881 ACCCAGCACCATTTTTCATACATATAT 59.270 33.333 0.00 0.00 0.00 0.86
4999 6398 7.066142 ACCCAGCACCATTTTTCATACATATA 58.934 34.615 0.00 0.00 0.00 0.86
5000 6399 5.898972 ACCCAGCACCATTTTTCATACATAT 59.101 36.000 0.00 0.00 0.00 1.78
5001 6400 5.268387 ACCCAGCACCATTTTTCATACATA 58.732 37.500 0.00 0.00 0.00 2.29
5002 6401 4.095946 ACCCAGCACCATTTTTCATACAT 58.904 39.130 0.00 0.00 0.00 2.29
5003 6402 3.505386 ACCCAGCACCATTTTTCATACA 58.495 40.909 0.00 0.00 0.00 2.29
5004 6403 4.535526 AACCCAGCACCATTTTTCATAC 57.464 40.909 0.00 0.00 0.00 2.39
5046 6445 3.291584 TGCAGTAGGATCATTCGAGAGT 58.708 45.455 0.00 0.00 0.00 3.24
5050 6449 4.625028 CTGATTGCAGTAGGATCATTCGA 58.375 43.478 0.00 0.00 37.37 3.71
5070 6469 5.207768 GTTTATCTGTGTTTCAGCACACTG 58.792 41.667 6.60 6.18 46.29 3.66
5071 6470 4.881273 TGTTTATCTGTGTTTCAGCACACT 59.119 37.500 6.60 0.00 46.29 3.55
5072 6471 5.168526 TGTTTATCTGTGTTTCAGCACAC 57.831 39.130 0.00 0.00 46.32 3.82
5073 6472 5.761003 CATGTTTATCTGTGTTTCAGCACA 58.239 37.500 0.00 0.00 45.85 4.57
5074 6473 4.618489 GCATGTTTATCTGTGTTTCAGCAC 59.382 41.667 0.00 0.00 43.32 4.40
5075 6474 4.277921 TGCATGTTTATCTGTGTTTCAGCA 59.722 37.500 0.00 0.00 43.32 4.41
5076 6475 4.797471 TGCATGTTTATCTGTGTTTCAGC 58.203 39.130 0.00 0.00 43.32 4.26
5077 6476 5.287752 GCATGCATGTTTATCTGTGTTTCAG 59.712 40.000 26.79 0.00 44.85 3.02
5078 6477 5.162794 GCATGCATGTTTATCTGTGTTTCA 58.837 37.500 26.79 0.00 0.00 2.69
5079 6478 4.563976 GGCATGCATGTTTATCTGTGTTTC 59.436 41.667 26.79 5.67 0.00 2.78
5080 6479 4.221262 AGGCATGCATGTTTATCTGTGTTT 59.779 37.500 26.79 0.00 0.00 2.83
5081 6480 3.765511 AGGCATGCATGTTTATCTGTGTT 59.234 39.130 26.79 0.00 0.00 3.32
5082 6481 3.129813 CAGGCATGCATGTTTATCTGTGT 59.870 43.478 26.79 0.00 0.00 3.72
5083 6482 3.702330 CAGGCATGCATGTTTATCTGTG 58.298 45.455 26.79 9.70 0.00 3.66
5113 6512 3.560068 AGTTACTGTATTTATGCCGCAGC 59.440 43.478 0.00 0.00 40.48 5.25
5114 6513 4.808895 TCAGTTACTGTATTTATGCCGCAG 59.191 41.667 12.41 0.00 32.61 5.18
5115 6514 4.760878 TCAGTTACTGTATTTATGCCGCA 58.239 39.130 12.41 0.00 32.61 5.69
5116 6515 5.522460 TCTTCAGTTACTGTATTTATGCCGC 59.478 40.000 12.41 0.00 32.61 6.53
5117 6516 7.438160 TCATCTTCAGTTACTGTATTTATGCCG 59.562 37.037 12.41 0.00 32.61 5.69
5118 6517 8.662781 TCATCTTCAGTTACTGTATTTATGCC 57.337 34.615 12.41 0.00 32.61 4.40
5124 6523 9.314321 CGGTAATTCATCTTCAGTTACTGTATT 57.686 33.333 12.41 5.13 32.61 1.89
5125 6524 8.475639 ACGGTAATTCATCTTCAGTTACTGTAT 58.524 33.333 12.41 2.47 40.89 2.29
5126 6525 7.833786 ACGGTAATTCATCTTCAGTTACTGTA 58.166 34.615 12.41 1.60 40.89 2.74
5127 6526 6.698380 ACGGTAATTCATCTTCAGTTACTGT 58.302 36.000 12.41 0.00 39.03 3.55
5128 6527 7.596749 AACGGTAATTCATCTTCAGTTACTG 57.403 36.000 5.94 5.94 37.55 2.74
5129 6528 7.119262 CCAAACGGTAATTCATCTTCAGTTACT 59.881 37.037 0.00 0.00 0.00 2.24
5130 6529 7.094933 ACCAAACGGTAATTCATCTTCAGTTAC 60.095 37.037 0.00 0.00 33.92 2.50
5131 6530 6.938030 ACCAAACGGTAATTCATCTTCAGTTA 59.062 34.615 0.00 0.00 33.92 2.24
5132 6531 5.768164 ACCAAACGGTAATTCATCTTCAGTT 59.232 36.000 0.00 0.00 33.92 3.16
5133 6532 5.313712 ACCAAACGGTAATTCATCTTCAGT 58.686 37.500 0.00 0.00 33.92 3.41
5134 6533 5.880054 ACCAAACGGTAATTCATCTTCAG 57.120 39.130 0.00 0.00 33.92 3.02
5135 6534 5.048364 CCAACCAAACGGTAATTCATCTTCA 60.048 40.000 0.00 0.00 34.92 3.02
5136 6535 5.399013 CCAACCAAACGGTAATTCATCTTC 58.601 41.667 0.00 0.00 34.92 2.87
5137 6536 4.321675 GCCAACCAAACGGTAATTCATCTT 60.322 41.667 0.00 0.00 34.92 2.40
5138 6537 3.192633 GCCAACCAAACGGTAATTCATCT 59.807 43.478 0.00 0.00 34.92 2.90
5139 6538 3.507786 GCCAACCAAACGGTAATTCATC 58.492 45.455 0.00 0.00 34.92 2.92
5140 6539 2.094957 CGCCAACCAAACGGTAATTCAT 60.095 45.455 0.00 0.00 34.92 2.57
5141 6540 1.267261 CGCCAACCAAACGGTAATTCA 59.733 47.619 0.00 0.00 34.92 2.57
5142 6541 1.401800 CCGCCAACCAAACGGTAATTC 60.402 52.381 0.00 0.00 42.01 2.17
5143 6542 0.599060 CCGCCAACCAAACGGTAATT 59.401 50.000 0.00 0.00 42.01 1.40
5144 6543 1.245376 CCCGCCAACCAAACGGTAAT 61.245 55.000 0.00 0.00 45.49 1.89
5145 6544 1.897615 CCCGCCAACCAAACGGTAA 60.898 57.895 0.00 0.00 45.49 2.85
5146 6545 2.281622 CCCGCCAACCAAACGGTA 60.282 61.111 0.00 0.00 45.49 4.02
5149 6548 4.639171 GTGCCCGCCAACCAAACG 62.639 66.667 0.00 0.00 0.00 3.60
5150 6549 4.293648 GGTGCCCGCCAACCAAAC 62.294 66.667 0.00 0.00 0.00 2.93
5155 6554 4.293648 GTTTGGGTGCCCGCCAAC 62.294 66.667 2.44 2.39 39.42 3.77
5159 6558 3.729698 GTACGTTTGGGTGCCCGC 61.730 66.667 0.00 0.00 39.42 6.13
5160 6559 3.416382 CGTACGTTTGGGTGCCCG 61.416 66.667 7.22 0.00 39.42 6.13
5161 6560 3.729698 GCGTACGTTTGGGTGCCC 61.730 66.667 17.90 0.00 0.00 5.36
5162 6561 2.667199 AGCGTACGTTTGGGTGCC 60.667 61.111 17.90 0.00 0.00 5.01
5163 6562 2.554272 CAGCGTACGTTTGGGTGC 59.446 61.111 17.90 0.00 0.00 5.01
5164 6563 2.170260 CTGCAGCGTACGTTTGGGTG 62.170 60.000 17.90 4.86 0.00 4.61
5165 6564 1.959226 CTGCAGCGTACGTTTGGGT 60.959 57.895 17.90 0.00 0.00 4.51
5166 6565 2.677003 CCTGCAGCGTACGTTTGGG 61.677 63.158 17.90 8.56 0.00 4.12
5167 6566 2.860293 CCTGCAGCGTACGTTTGG 59.140 61.111 17.90 8.94 0.00 3.28
5168 6567 2.173382 GCCTGCAGCGTACGTTTG 59.827 61.111 17.90 16.10 0.00 2.93
5194 6593 4.445545 CAAAGTTCTCGGCGGCGC 62.446 66.667 28.25 26.17 0.00 6.53
5195 6594 4.445545 GCAAAGTTCTCGGCGGCG 62.446 66.667 27.15 27.15 0.00 6.46
5196 6595 4.103103 GGCAAAGTTCTCGGCGGC 62.103 66.667 7.21 0.00 0.00 6.53
5197 6596 2.358737 AGGCAAAGTTCTCGGCGG 60.359 61.111 7.21 0.00 0.00 6.13
5198 6597 2.391389 GGAGGCAAAGTTCTCGGCG 61.391 63.158 0.00 0.00 0.00 6.46
5199 6598 1.302511 TGGAGGCAAAGTTCTCGGC 60.303 57.895 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.