Multiple sequence alignment - TraesCS5D01G548200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G548200 chr5D 100.000 5557 0 0 1 5557 555917827 555912271 0.000000e+00 10262.0
1 TraesCS5D01G548200 chr5D 84.032 2029 276 25 2525 4535 559982724 559984722 0.000000e+00 1908.0
2 TraesCS5D01G548200 chr5D 82.485 2101 314 33 2459 4535 559917400 559919470 0.000000e+00 1792.0
3 TraesCS5D01G548200 chr5D 80.332 1327 208 34 643 1938 559915340 559916644 0.000000e+00 955.0
4 TraesCS5D01G548200 chr5D 84.964 838 104 16 1348 2169 556110968 556110137 0.000000e+00 830.0
5 TraesCS5D01G548200 chr5D 93.900 541 25 2 863 1399 556111510 556110974 0.000000e+00 809.0
6 TraesCS5D01G548200 chr5D 91.042 614 22 10 269 872 556112122 556111532 0.000000e+00 798.0
7 TraesCS5D01G548200 chr5D 81.809 940 149 16 905 1835 555456722 555455796 0.000000e+00 769.0
8 TraesCS5D01G548200 chr5D 83.043 861 132 10 1010 1860 559981542 559982398 0.000000e+00 769.0
9 TraesCS5D01G548200 chr5D 91.071 280 22 2 4987 5265 555341635 555341358 5.260000e-100 375.0
10 TraesCS5D01G548200 chr5D 75.032 793 142 31 3696 4468 555042143 555041387 3.230000e-82 316.0
11 TraesCS5D01G548200 chr5D 91.781 146 8 4 5397 5542 555341312 555341171 3.400000e-47 200.0
12 TraesCS5D01G548200 chr5B 94.808 3794 185 6 744 4527 695775188 695778979 0.000000e+00 5904.0
13 TraesCS5D01G548200 chr5B 93.294 2192 138 7 2289 4473 695423528 695425717 0.000000e+00 3225.0
14 TraesCS5D01G548200 chr5B 81.953 3923 553 88 631 4485 710342356 710346191 0.000000e+00 3179.0
15 TraesCS5D01G548200 chr5B 91.588 1902 103 27 211 2104 695421607 695423459 0.000000e+00 2573.0
16 TraesCS5D01G548200 chr5B 75.856 1665 359 35 2495 4142 695962992 695964630 0.000000e+00 808.0
17 TraesCS5D01G548200 chr5B 88.109 513 26 10 211 715 695774709 695775194 1.340000e-160 577.0
18 TraesCS5D01G548200 chr5B 87.164 335 34 7 4965 5293 695779482 695779813 6.800000e-99 372.0
19 TraesCS5D01G548200 chr5B 82.153 353 34 8 4586 4911 695779117 695779467 5.480000e-70 276.0
20 TraesCS5D01G548200 chr5B 89.286 140 11 2 5397 5536 695779851 695779986 7.400000e-39 172.0
21 TraesCS5D01G548200 chr5B 89.908 109 11 0 5449 5557 695780229 695780337 2.090000e-29 141.0
22 TraesCS5D01G548200 chr5B 85.393 89 7 3 505 592 710342006 710342089 2.760000e-13 87.9
23 TraesCS5D01G548200 chr4A 83.200 2000 299 20 2508 4494 604849257 604847282 0.000000e+00 1797.0
24 TraesCS5D01G548200 chr4A 83.624 1722 236 29 2459 4159 604774706 604776402 0.000000e+00 1576.0
25 TraesCS5D01G548200 chr4A 83.719 1167 180 7 2436 3594 604390778 604389614 0.000000e+00 1094.0
26 TraesCS5D01G548200 chr4A 80.222 1350 217 39 625 1939 604772518 604773852 0.000000e+00 968.0
27 TraesCS5D01G548200 chr4A 87.969 640 59 13 4921 5554 703465692 703465065 0.000000e+00 739.0
28 TraesCS5D01G548200 chr4A 78.441 821 160 14 1035 1845 613765199 613766012 2.290000e-143 520.0
29 TraesCS5D01G548200 chr4A 91.197 284 24 1 4983 5265 613738559 613738842 8.730000e-103 385.0
30 TraesCS5D01G548200 chr4A 83.228 316 48 5 4225 4537 604776405 604776718 9.110000e-73 285.0
31 TraesCS5D01G548200 chr4A 87.081 209 15 7 5350 5557 613738847 613739044 5.600000e-55 226.0
32 TraesCS5D01G548200 chr4A 81.982 111 12 5 4828 4931 604677322 604677213 2.760000e-13 87.9
33 TraesCS5D01G548200 chr7A 87.580 628 63 11 4921 5546 125592325 125591711 0.000000e+00 713.0
34 TraesCS5D01G548200 chrUn 86.593 634 59 15 4921 5549 103245981 103246593 0.000000e+00 676.0
35 TraesCS5D01G548200 chr2A 94.393 214 12 0 1 214 748715342 748715555 4.150000e-86 329.0
36 TraesCS5D01G548200 chr3D 93.925 214 13 0 1 214 3296192 3295979 1.930000e-84 324.0
37 TraesCS5D01G548200 chr3D 81.429 140 17 4 629 760 592962298 592962160 7.610000e-19 106.0
38 TraesCS5D01G548200 chr2D 93.213 221 14 1 1 221 18176194 18175975 1.930000e-84 324.0
39 TraesCS5D01G548200 chr2B 93.925 214 13 0 1 214 292857254 292857041 1.930000e-84 324.0
40 TraesCS5D01G548200 chr2B 93.548 217 14 0 1 217 651612252 651612036 1.930000e-84 324.0
41 TraesCS5D01G548200 chr7B 93.519 216 14 0 2 217 686889996 686889781 6.940000e-84 322.0
42 TraesCS5D01G548200 chr1D 93.488 215 14 0 1 215 725267 725481 2.500000e-83 320.0
43 TraesCS5D01G548200 chr6D 93.458 214 14 0 1 214 446432366 446432579 8.980000e-83 318.0
44 TraesCS5D01G548200 chr3A 91.667 228 18 1 1 228 106762707 106762481 1.160000e-81 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G548200 chr5D 555912271 555917827 5556 True 10262.000000 10262 100.000000 1 5557 1 chr5D.!!$R3 5556
1 TraesCS5D01G548200 chr5D 559915340 559919470 4130 False 1373.500000 1792 81.408500 643 4535 2 chr5D.!!$F1 3892
2 TraesCS5D01G548200 chr5D 559981542 559984722 3180 False 1338.500000 1908 83.537500 1010 4535 2 chr5D.!!$F2 3525
3 TraesCS5D01G548200 chr5D 556110137 556112122 1985 True 812.333333 830 89.968667 269 2169 3 chr5D.!!$R5 1900
4 TraesCS5D01G548200 chr5D 555455796 555456722 926 True 769.000000 769 81.809000 905 1835 1 chr5D.!!$R2 930
5 TraesCS5D01G548200 chr5D 555041387 555042143 756 True 316.000000 316 75.032000 3696 4468 1 chr5D.!!$R1 772
6 TraesCS5D01G548200 chr5B 695421607 695425717 4110 False 2899.000000 3225 92.441000 211 4473 2 chr5B.!!$F2 4262
7 TraesCS5D01G548200 chr5B 710342006 710346191 4185 False 1633.450000 3179 83.673000 505 4485 2 chr5B.!!$F4 3980
8 TraesCS5D01G548200 chr5B 695774709 695780337 5628 False 1240.333333 5904 88.571333 211 5557 6 chr5B.!!$F3 5346
9 TraesCS5D01G548200 chr5B 695962992 695964630 1638 False 808.000000 808 75.856000 2495 4142 1 chr5B.!!$F1 1647
10 TraesCS5D01G548200 chr4A 604847282 604849257 1975 True 1797.000000 1797 83.200000 2508 4494 1 chr4A.!!$R3 1986
11 TraesCS5D01G548200 chr4A 604389614 604390778 1164 True 1094.000000 1094 83.719000 2436 3594 1 chr4A.!!$R1 1158
12 TraesCS5D01G548200 chr4A 604772518 604776718 4200 False 943.000000 1576 82.358000 625 4537 3 chr4A.!!$F2 3912
13 TraesCS5D01G548200 chr4A 703465065 703465692 627 True 739.000000 739 87.969000 4921 5554 1 chr4A.!!$R4 633
14 TraesCS5D01G548200 chr4A 613765199 613766012 813 False 520.000000 520 78.441000 1035 1845 1 chr4A.!!$F1 810
15 TraesCS5D01G548200 chr7A 125591711 125592325 614 True 713.000000 713 87.580000 4921 5546 1 chr7A.!!$R1 625
16 TraesCS5D01G548200 chrUn 103245981 103246593 612 False 676.000000 676 86.593000 4921 5549 1 chrUn.!!$F1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.249489 CTAATAAGCGTCGCCAGCCT 60.249 55.000 14.86 0.0 34.64 4.58 F
1701 2101 0.234884 CGGTCTCGCAAAAACCAGAC 59.765 55.000 0.00 0.0 35.49 3.51 F
2863 3787 3.396560 GTTTACTAGCAAACCGACCAGT 58.603 45.455 7.26 0.0 33.21 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2364 1.247567 AGGATTGTTCAAGCCAACCG 58.752 50.0 19.58 0.00 0.00 4.44 R
3152 4078 0.478072 AGCCAATGTCCACTGGTTGA 59.522 50.0 0.00 0.00 34.97 3.18 R
4749 5832 0.316442 CAACGACAAGTGTGCTGCAG 60.316 55.0 10.11 10.11 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.070115 TTAGTACCGGTTGGAGCCA 57.930 52.632 15.04 0.00 39.21 4.75
19 20 0.609662 TTAGTACCGGTTGGAGCCAC 59.390 55.000 15.04 1.99 39.21 5.01
20 21 1.259840 TAGTACCGGTTGGAGCCACC 61.260 60.000 15.04 0.00 39.21 4.61
28 29 3.552219 TGGAGCCACCAACACGTA 58.448 55.556 0.00 0.00 46.75 3.57
29 30 1.070105 TGGAGCCACCAACACGTAC 59.930 57.895 0.00 0.00 46.75 3.67
30 31 1.370064 GGAGCCACCAACACGTACT 59.630 57.895 0.00 0.00 38.79 2.73
31 32 0.604578 GGAGCCACCAACACGTACTA 59.395 55.000 0.00 0.00 38.79 1.82
32 33 1.001181 GGAGCCACCAACACGTACTAA 59.999 52.381 0.00 0.00 38.79 2.24
33 34 2.548493 GGAGCCACCAACACGTACTAAA 60.548 50.000 0.00 0.00 38.79 1.85
34 35 2.735134 GAGCCACCAACACGTACTAAAG 59.265 50.000 0.00 0.00 0.00 1.85
35 36 1.802365 GCCACCAACACGTACTAAAGG 59.198 52.381 0.00 0.00 0.00 3.11
36 37 1.802365 CCACCAACACGTACTAAAGGC 59.198 52.381 0.00 0.00 0.00 4.35
37 38 1.802365 CACCAACACGTACTAAAGGCC 59.198 52.381 0.00 0.00 0.00 5.19
38 39 1.417145 ACCAACACGTACTAAAGGCCA 59.583 47.619 5.01 0.00 0.00 5.36
39 40 1.802365 CCAACACGTACTAAAGGCCAC 59.198 52.381 5.01 0.00 0.00 5.01
40 41 1.802365 CAACACGTACTAAAGGCCACC 59.198 52.381 5.01 0.00 0.00 4.61
41 42 1.050204 ACACGTACTAAAGGCCACCA 58.950 50.000 5.01 0.00 0.00 4.17
42 43 1.270465 ACACGTACTAAAGGCCACCAC 60.270 52.381 5.01 0.00 0.00 4.16
43 44 0.322648 ACGTACTAAAGGCCACCACC 59.677 55.000 5.01 0.00 0.00 4.61
44 45 0.611714 CGTACTAAAGGCCACCACCT 59.388 55.000 5.01 0.00 43.91 4.00
45 46 1.405121 CGTACTAAAGGCCACCACCTC 60.405 57.143 5.01 0.00 39.93 3.85
46 47 1.907255 GTACTAAAGGCCACCACCTCT 59.093 52.381 5.01 0.00 39.93 3.69
47 48 1.446016 ACTAAAGGCCACCACCTCTT 58.554 50.000 5.01 0.00 39.93 2.85
48 49 1.780919 ACTAAAGGCCACCACCTCTTT 59.219 47.619 5.01 0.00 39.93 2.52
49 50 2.983898 ACTAAAGGCCACCACCTCTTTA 59.016 45.455 5.01 0.00 39.93 1.85
50 51 2.586648 AAAGGCCACCACCTCTTTAG 57.413 50.000 5.01 0.00 39.93 1.85
51 52 1.446016 AAGGCCACCACCTCTTTAGT 58.554 50.000 5.01 0.00 39.93 2.24
52 53 2.337359 AGGCCACCACCTCTTTAGTA 57.663 50.000 5.01 0.00 33.62 1.82
53 54 2.846950 AGGCCACCACCTCTTTAGTAT 58.153 47.619 5.01 0.00 33.62 2.12
54 55 2.772515 AGGCCACCACCTCTTTAGTATC 59.227 50.000 5.01 0.00 33.62 2.24
55 56 2.483188 GGCCACCACCTCTTTAGTATCG 60.483 54.545 0.00 0.00 0.00 2.92
56 57 2.483188 GCCACCACCTCTTTAGTATCGG 60.483 54.545 0.00 0.00 0.00 4.18
57 58 2.764572 CCACCACCTCTTTAGTATCGGT 59.235 50.000 0.00 0.00 0.00 4.69
58 59 3.197116 CCACCACCTCTTTAGTATCGGTT 59.803 47.826 0.00 0.00 0.00 4.44
59 60 4.430908 CACCACCTCTTTAGTATCGGTTC 58.569 47.826 0.00 0.00 0.00 3.62
60 61 3.129988 ACCACCTCTTTAGTATCGGTTCG 59.870 47.826 0.00 0.00 0.00 3.95
61 62 3.129988 CCACCTCTTTAGTATCGGTTCGT 59.870 47.826 0.00 0.00 0.00 3.85
62 63 4.103357 CACCTCTTTAGTATCGGTTCGTG 58.897 47.826 0.00 0.00 0.00 4.35
63 64 3.129988 ACCTCTTTAGTATCGGTTCGTGG 59.870 47.826 0.00 0.00 0.00 4.94
64 65 3.114065 CTCTTTAGTATCGGTTCGTGGC 58.886 50.000 0.00 0.00 0.00 5.01
65 66 2.492881 TCTTTAGTATCGGTTCGTGGCA 59.507 45.455 0.00 0.00 0.00 4.92
66 67 3.131577 TCTTTAGTATCGGTTCGTGGCAT 59.868 43.478 0.00 0.00 0.00 4.40
67 68 2.502213 TAGTATCGGTTCGTGGCATG 57.498 50.000 0.00 0.00 0.00 4.06
68 69 0.821517 AGTATCGGTTCGTGGCATGA 59.178 50.000 5.03 5.03 0.00 3.07
69 70 1.206132 AGTATCGGTTCGTGGCATGAA 59.794 47.619 17.86 17.86 0.00 2.57
70 71 1.326548 GTATCGGTTCGTGGCATGAAC 59.673 52.381 34.08 34.08 42.00 3.18
73 74 3.960237 GTTCGTGGCATGAACCGA 58.040 55.556 32.65 15.99 37.98 4.69
74 75 2.466867 GTTCGTGGCATGAACCGAT 58.533 52.632 32.65 0.00 37.98 4.18
75 76 1.647346 GTTCGTGGCATGAACCGATA 58.353 50.000 32.65 6.85 37.98 2.92
76 77 1.326548 GTTCGTGGCATGAACCGATAC 59.673 52.381 32.65 14.67 37.98 2.24
77 78 0.821517 TCGTGGCATGAACCGATACT 59.178 50.000 7.00 0.00 0.00 2.12
78 79 2.025898 TCGTGGCATGAACCGATACTA 58.974 47.619 7.00 0.00 0.00 1.82
79 80 2.427812 TCGTGGCATGAACCGATACTAA 59.572 45.455 7.00 0.00 0.00 2.24
80 81 3.119065 TCGTGGCATGAACCGATACTAAA 60.119 43.478 7.00 0.00 0.00 1.85
81 82 3.245284 CGTGGCATGAACCGATACTAAAG 59.755 47.826 0.00 0.00 0.00 1.85
82 83 3.560068 GTGGCATGAACCGATACTAAAGG 59.440 47.826 0.00 0.00 0.00 3.11
83 84 3.199071 TGGCATGAACCGATACTAAAGGT 59.801 43.478 0.00 0.00 40.50 3.50
88 89 2.591571 ACCGATACTAAAGGTTCGCC 57.408 50.000 0.00 0.00 33.96 5.54
89 90 1.826720 ACCGATACTAAAGGTTCGCCA 59.173 47.619 0.00 0.00 40.60 5.69
90 91 2.199236 CCGATACTAAAGGTTCGCCAC 58.801 52.381 0.00 0.00 40.60 5.01
91 92 1.850441 CGATACTAAAGGTTCGCCACG 59.150 52.381 0.00 0.00 40.60 4.94
92 93 2.478370 CGATACTAAAGGTTCGCCACGA 60.478 50.000 0.00 0.00 40.60 4.35
93 94 3.514645 GATACTAAAGGTTCGCCACGAA 58.485 45.455 0.00 0.00 43.75 3.85
100 101 4.481870 TTCGCCACGAACCGATAC 57.518 55.556 0.00 0.00 41.05 2.24
101 102 1.885157 TTCGCCACGAACCGATACT 59.115 52.632 0.00 0.00 41.05 2.12
102 103 1.093972 TTCGCCACGAACCGATACTA 58.906 50.000 0.00 0.00 41.05 1.82
103 104 1.093972 TCGCCACGAACCGATACTAA 58.906 50.000 0.00 0.00 31.06 2.24
104 105 1.677576 TCGCCACGAACCGATACTAAT 59.322 47.619 0.00 0.00 31.06 1.73
105 106 2.877786 TCGCCACGAACCGATACTAATA 59.122 45.455 0.00 0.00 31.06 0.98
106 107 3.314913 TCGCCACGAACCGATACTAATAA 59.685 43.478 0.00 0.00 31.06 1.40
107 108 3.667261 CGCCACGAACCGATACTAATAAG 59.333 47.826 0.00 0.00 0.00 1.73
108 109 3.427863 GCCACGAACCGATACTAATAAGC 59.572 47.826 0.00 0.00 0.00 3.09
109 110 3.667261 CCACGAACCGATACTAATAAGCG 59.333 47.826 0.00 0.00 0.00 4.68
110 111 4.285292 CACGAACCGATACTAATAAGCGT 58.715 43.478 0.00 0.00 0.00 5.07
111 112 4.378030 CACGAACCGATACTAATAAGCGTC 59.622 45.833 0.00 0.00 0.00 5.19
112 113 3.596982 CGAACCGATACTAATAAGCGTCG 59.403 47.826 0.00 0.00 34.48 5.12
113 114 2.926165 ACCGATACTAATAAGCGTCGC 58.074 47.619 9.80 9.80 33.79 5.19
114 115 2.248487 CCGATACTAATAAGCGTCGCC 58.752 52.381 14.86 0.00 33.79 5.54
115 116 2.351060 CCGATACTAATAAGCGTCGCCA 60.351 50.000 14.86 2.04 33.79 5.69
116 117 2.909244 CGATACTAATAAGCGTCGCCAG 59.091 50.000 14.86 6.25 0.00 4.85
117 118 2.129823 TACTAATAAGCGTCGCCAGC 57.870 50.000 14.86 0.00 0.00 4.85
118 119 0.529992 ACTAATAAGCGTCGCCAGCC 60.530 55.000 14.86 0.00 34.64 4.85
119 120 0.249489 CTAATAAGCGTCGCCAGCCT 60.249 55.000 14.86 0.00 34.64 4.58
120 121 1.000607 CTAATAAGCGTCGCCAGCCTA 60.001 52.381 14.86 0.00 34.64 3.93
121 122 0.249489 AATAAGCGTCGCCAGCCTAG 60.249 55.000 14.86 0.00 34.64 3.02
122 123 2.701163 ATAAGCGTCGCCAGCCTAGC 62.701 60.000 14.86 0.00 34.64 3.42
126 127 4.452733 GTCGCCAGCCTAGCCGTT 62.453 66.667 0.00 0.00 0.00 4.44
127 128 4.451150 TCGCCAGCCTAGCCGTTG 62.451 66.667 0.00 0.00 0.00 4.10
129 130 4.096003 GCCAGCCTAGCCGTTGGA 62.096 66.667 6.14 0.00 32.34 3.53
130 131 2.668632 CCAGCCTAGCCGTTGGAA 59.331 61.111 0.00 0.00 32.34 3.53
131 132 1.745489 CCAGCCTAGCCGTTGGAAC 60.745 63.158 0.00 0.00 32.34 3.62
132 133 1.745489 CAGCCTAGCCGTTGGAACC 60.745 63.158 0.00 0.00 0.00 3.62
133 134 2.818274 GCCTAGCCGTTGGAACCG 60.818 66.667 0.00 0.00 0.00 4.44
139 140 2.344500 CCGTTGGAACCGGCACTA 59.656 61.111 0.00 0.00 38.85 2.74
140 141 1.301874 CCGTTGGAACCGGCACTAA 60.302 57.895 0.00 0.00 38.85 2.24
141 142 1.571215 CCGTTGGAACCGGCACTAAC 61.571 60.000 0.00 9.48 38.85 2.34
142 143 1.864176 GTTGGAACCGGCACTAACG 59.136 57.895 0.00 0.00 0.00 3.18
148 149 2.340809 CCGGCACTAACGGTCACA 59.659 61.111 0.00 0.00 46.03 3.58
149 150 1.079405 CCGGCACTAACGGTCACAT 60.079 57.895 0.00 0.00 46.03 3.21
150 151 0.672401 CCGGCACTAACGGTCACATT 60.672 55.000 0.00 0.00 46.03 2.71
151 152 1.404449 CCGGCACTAACGGTCACATTA 60.404 52.381 0.00 0.00 46.03 1.90
152 153 1.924524 CGGCACTAACGGTCACATTAG 59.075 52.381 0.00 0.00 35.03 1.73
153 154 2.673043 CGGCACTAACGGTCACATTAGT 60.673 50.000 0.00 0.00 41.31 2.24
155 156 3.991605 CACTAACGGTCACATTAGTGC 57.008 47.619 14.88 0.00 46.70 4.40
156 157 2.671396 CACTAACGGTCACATTAGTGCC 59.329 50.000 14.88 0.00 46.70 5.01
160 161 3.243128 GGTCACATTAGTGCCGGTT 57.757 52.632 1.90 0.00 45.49 4.44
161 162 1.084289 GGTCACATTAGTGCCGGTTC 58.916 55.000 1.90 0.00 45.49 3.62
162 163 1.609580 GGTCACATTAGTGCCGGTTCA 60.610 52.381 1.90 0.00 45.49 3.18
163 164 2.147958 GTCACATTAGTGCCGGTTCAA 58.852 47.619 1.90 0.00 45.49 2.69
164 165 2.747446 GTCACATTAGTGCCGGTTCAAT 59.253 45.455 1.90 0.00 45.49 2.57
165 166 3.190535 GTCACATTAGTGCCGGTTCAATT 59.809 43.478 1.90 0.00 45.49 2.32
166 167 4.393680 GTCACATTAGTGCCGGTTCAATTA 59.606 41.667 1.90 0.00 45.49 1.40
167 168 4.393680 TCACATTAGTGCCGGTTCAATTAC 59.606 41.667 1.90 0.00 45.49 1.89
168 169 4.155099 CACATTAGTGCCGGTTCAATTACA 59.845 41.667 1.90 0.00 39.21 2.41
169 170 4.762765 ACATTAGTGCCGGTTCAATTACAA 59.237 37.500 1.90 0.00 0.00 2.41
170 171 5.241949 ACATTAGTGCCGGTTCAATTACAAA 59.758 36.000 1.90 0.00 0.00 2.83
171 172 3.636282 AGTGCCGGTTCAATTACAAAC 57.364 42.857 1.90 0.00 0.00 2.93
172 173 2.295070 AGTGCCGGTTCAATTACAAACC 59.705 45.455 1.90 6.53 41.28 3.27
178 179 4.841443 GGTTCAATTACAAACCGGAACT 57.159 40.909 9.46 0.00 35.93 3.01
179 180 5.945466 GGTTCAATTACAAACCGGAACTA 57.055 39.130 9.46 0.00 35.93 2.24
180 181 6.316440 GGTTCAATTACAAACCGGAACTAA 57.684 37.500 9.46 0.00 35.93 2.24
181 182 6.916440 GGTTCAATTACAAACCGGAACTAAT 58.084 36.000 9.46 0.38 35.93 1.73
182 183 6.804783 GGTTCAATTACAAACCGGAACTAATG 59.195 38.462 9.46 0.00 35.93 1.90
183 184 7.308710 GGTTCAATTACAAACCGGAACTAATGA 60.309 37.037 9.46 0.00 35.93 2.57
184 185 7.372451 TCAATTACAAACCGGAACTAATGAG 57.628 36.000 9.46 1.29 0.00 2.90
185 186 6.938030 TCAATTACAAACCGGAACTAATGAGT 59.062 34.615 9.46 0.00 37.59 3.41
187 188 7.754851 ATTACAAACCGGAACTAATGAGTTT 57.245 32.000 9.46 0.00 46.23 2.66
188 189 5.684550 ACAAACCGGAACTAATGAGTTTC 57.315 39.130 9.46 0.00 46.23 2.78
189 190 5.127491 ACAAACCGGAACTAATGAGTTTCA 58.873 37.500 9.46 0.00 46.23 2.69
190 191 5.008316 ACAAACCGGAACTAATGAGTTTCAC 59.992 40.000 9.46 0.00 46.23 3.18
191 192 4.345859 ACCGGAACTAATGAGTTTCACA 57.654 40.909 9.46 0.00 46.23 3.58
192 193 4.906618 ACCGGAACTAATGAGTTTCACAT 58.093 39.130 9.46 0.00 46.23 3.21
193 194 5.313712 ACCGGAACTAATGAGTTTCACATT 58.686 37.500 9.46 0.00 46.23 2.71
194 195 6.469410 ACCGGAACTAATGAGTTTCACATTA 58.531 36.000 9.46 0.00 46.23 1.90
199 200 5.757850 CTAATGAGTTTCACATTAGGCCC 57.242 43.478 15.51 0.00 46.13 5.80
200 201 4.322057 AATGAGTTTCACATTAGGCCCT 57.678 40.909 0.00 0.00 36.40 5.19
201 202 3.806949 TGAGTTTCACATTAGGCCCTT 57.193 42.857 0.00 0.00 0.00 3.95
202 203 4.112634 TGAGTTTCACATTAGGCCCTTT 57.887 40.909 0.00 0.00 0.00 3.11
203 204 4.479158 TGAGTTTCACATTAGGCCCTTTT 58.521 39.130 0.00 0.00 0.00 2.27
204 205 4.898861 TGAGTTTCACATTAGGCCCTTTTT 59.101 37.500 0.00 0.00 0.00 1.94
205 206 5.010617 TGAGTTTCACATTAGGCCCTTTTTC 59.989 40.000 0.00 0.00 0.00 2.29
206 207 5.147767 AGTTTCACATTAGGCCCTTTTTCT 58.852 37.500 0.00 0.00 0.00 2.52
207 208 6.311735 AGTTTCACATTAGGCCCTTTTTCTA 58.688 36.000 0.00 0.00 0.00 2.10
208 209 6.208797 AGTTTCACATTAGGCCCTTTTTCTAC 59.791 38.462 0.00 0.00 0.00 2.59
209 210 5.514500 TCACATTAGGCCCTTTTTCTACT 57.486 39.130 0.00 0.00 0.00 2.57
210 211 6.630203 TCACATTAGGCCCTTTTTCTACTA 57.370 37.500 0.00 0.00 0.00 1.82
211 212 6.650120 TCACATTAGGCCCTTTTTCTACTAG 58.350 40.000 0.00 0.00 0.00 2.57
212 213 6.214819 TCACATTAGGCCCTTTTTCTACTAGT 59.785 38.462 0.00 0.00 0.00 2.57
213 214 6.316390 CACATTAGGCCCTTTTTCTACTAGTG 59.684 42.308 5.39 0.00 0.00 2.74
214 215 5.431179 TTAGGCCCTTTTTCTACTAGTGG 57.569 43.478 5.39 1.87 0.00 4.00
215 216 3.257578 AGGCCCTTTTTCTACTAGTGGT 58.742 45.455 5.39 0.00 0.00 4.16
216 217 3.656264 AGGCCCTTTTTCTACTAGTGGTT 59.344 43.478 5.39 0.00 0.00 3.67
217 218 4.848086 AGGCCCTTTTTCTACTAGTGGTTA 59.152 41.667 5.39 0.00 0.00 2.85
218 219 5.311385 AGGCCCTTTTTCTACTAGTGGTTAA 59.689 40.000 5.39 0.00 0.00 2.01
219 220 5.413833 GGCCCTTTTTCTACTAGTGGTTAAC 59.586 44.000 5.39 0.00 0.00 2.01
220 221 5.413833 GCCCTTTTTCTACTAGTGGTTAACC 59.586 44.000 18.27 18.27 0.00 2.85
221 222 6.536447 CCCTTTTTCTACTAGTGGTTAACCA 58.464 40.000 23.69 23.69 45.30 3.67
241 242 5.557866 ACCAACCTTACAAAGACACTATCC 58.442 41.667 0.00 0.00 0.00 2.59
248 249 7.558444 ACCTTACAAAGACACTATCCACAAAAA 59.442 33.333 0.00 0.00 0.00 1.94
255 256 8.463930 AAGACACTATCCACAAAAATGAAAGA 57.536 30.769 0.00 0.00 0.00 2.52
308 309 4.840680 AGCATGGATCTAGCACTTGGTATA 59.159 41.667 0.00 0.00 0.00 1.47
324 325 5.258456 TGGTATACTGACCAGATTTCGAC 57.742 43.478 3.76 0.00 44.79 4.20
340 341 0.803380 CGACCCGGGCTTAAACGTAG 60.803 60.000 24.08 0.00 0.00 3.51
361 362 2.283101 TGGCCGGCAAGATGCTTT 60.283 55.556 30.85 0.00 44.28 3.51
366 367 1.701704 CCGGCAAGATGCTTTGTTTC 58.298 50.000 2.00 0.00 44.28 2.78
374 375 5.507985 GCAAGATGCTTTGTTTCACTAACCT 60.508 40.000 0.00 0.00 40.96 3.50
463 464 2.240667 ACATGCTAATTCACTGCTCCCT 59.759 45.455 0.00 0.00 0.00 4.20
530 534 3.152261 AGCTTGCAACTACTAGCTACG 57.848 47.619 6.54 0.00 45.05 3.51
537 541 1.677942 ACTACTAGCTACGAGCACCC 58.322 55.000 9.09 0.00 45.56 4.61
584 607 5.105917 GCTAGCTATATGTCCTCTTCCTGTC 60.106 48.000 7.70 0.00 0.00 3.51
612 635 0.934496 GAGCGTAACAAGCACACACA 59.066 50.000 0.00 0.00 37.01 3.72
613 636 0.655733 AGCGTAACAAGCACACACAC 59.344 50.000 0.00 0.00 37.01 3.82
614 637 0.653323 GCGTAACAAGCACACACACG 60.653 55.000 0.00 0.00 34.19 4.49
615 638 0.648441 CGTAACAAGCACACACACGT 59.352 50.000 0.00 0.00 0.00 4.49
884 1192 3.568538 CCAAAGAAATCTTGCTTGGTCG 58.431 45.455 0.00 0.00 36.12 4.79
1119 1456 1.735376 GCCGTGAGATTCGCTCCCTA 61.735 60.000 0.00 0.00 43.26 3.53
1234 1571 1.630369 GGGAGCTGGCATATGATACCA 59.370 52.381 6.97 3.57 0.00 3.25
1701 2101 0.234884 CGGTCTCGCAAAAACCAGAC 59.765 55.000 0.00 0.00 35.49 3.51
1945 2364 6.242829 CACACAAAGAAAACAACTCAATTGC 58.757 36.000 0.00 0.00 42.62 3.56
1949 2368 4.385358 AGAAAACAACTCAATTGCGGTT 57.615 36.364 0.00 5.75 42.62 4.44
1979 2416 8.523915 TGAACAATCCTTACAATCAATGCTAT 57.476 30.769 0.00 0.00 0.00 2.97
2472 3384 5.300034 TGATATTGGAGTTTCATGGCATGTC 59.700 40.000 25.62 15.92 0.00 3.06
2588 3512 4.708726 AGCATGGAAAACTATCAAGTGC 57.291 40.909 0.00 0.00 35.62 4.40
2863 3787 3.396560 GTTTACTAGCAAACCGACCAGT 58.603 45.455 7.26 0.00 33.21 4.00
3152 4078 7.759489 TGAGCTTATCAACAAAAGTATGGTT 57.241 32.000 0.00 0.00 34.02 3.67
3282 4211 0.555769 AGGTGGAGGCCAAAGTTTGA 59.444 50.000 17.33 0.00 34.18 2.69
3290 4219 5.122519 GGAGGCCAAAGTTTGAAAAATCAA 58.877 37.500 17.33 0.00 0.00 2.57
3408 4337 2.502213 AATGCCATCATGTTGCATCG 57.498 45.000 15.88 0.00 44.49 3.84
3414 4343 2.162008 CCATCATGTTGCATCGAACACA 59.838 45.455 0.00 0.00 38.64 3.72
3419 4348 0.240678 GTTGCATCGAACACATGCCA 59.759 50.000 5.55 0.00 45.25 4.92
3422 4351 0.179156 GCATCGAACACATGCCAAGG 60.179 55.000 0.00 0.00 40.79 3.61
3430 4359 1.272313 ACACATGCCAAGGCTTGATCT 60.272 47.619 28.18 9.01 45.43 2.75
3541 4470 2.983898 AGTACCTCAACTTTAGGGGCAA 59.016 45.455 0.00 0.00 38.54 4.52
3580 4509 4.722203 CATCAGGAATCGTGATGCTAAC 57.278 45.455 26.24 0.00 45.26 2.34
3616 4545 5.881443 CCCTAATTTTTGGGTATACACGTGA 59.119 40.000 25.01 6.34 38.26 4.35
3617 4546 6.544564 CCCTAATTTTTGGGTATACACGTGAT 59.455 38.462 25.01 13.62 38.26 3.06
3625 4554 4.097437 TGGGTATACACGTGATCAAGAGTC 59.903 45.833 25.01 2.21 0.00 3.36
3666 4595 5.119743 CGGCTAACTAAACTTGAACACCTAC 59.880 44.000 0.00 0.00 0.00 3.18
3683 4612 5.250774 ACACCTACAAGGATATTGGTTGACT 59.749 40.000 0.00 0.00 37.67 3.41
3687 4619 7.569111 ACCTACAAGGATATTGGTTGACTCTAT 59.431 37.037 0.00 0.00 37.67 1.98
3838 4779 4.818546 CCTTGCAAACGGAATATCTGATCT 59.181 41.667 0.00 0.00 0.00 2.75
3967 4921 5.645497 CCCTTGACTTCTTAGATTCTTGGTG 59.355 44.000 0.00 0.00 0.00 4.17
4009 4963 4.817464 TCAAAGGTTTTACACGCACTACAT 59.183 37.500 0.00 0.00 0.00 2.29
4080 5043 4.100084 CCGACCTGGGCATCTGCA 62.100 66.667 0.00 0.00 44.36 4.41
4176 5141 5.295950 CATCAAATAAGTTGGTTGGCACAA 58.704 37.500 0.00 0.00 40.08 3.33
4230 5195 7.935210 AGGTTTTGGACTTCGAATTTAAGACTA 59.065 33.333 0.00 0.00 0.00 2.59
4254 5219 3.369756 ACGAGCATATGTTACGTTTGTGG 59.630 43.478 14.46 0.00 33.48 4.17
4366 5337 6.698008 TCTCTCATCTCTCAAAGAAGCTAG 57.302 41.667 0.00 0.00 37.61 3.42
4497 5474 0.036294 GGAACCAAAGGGAGAGGACG 60.036 60.000 0.00 0.00 38.05 4.79
4506 5483 1.036707 GGGAGAGGACGATGAAGAGG 58.963 60.000 0.00 0.00 0.00 3.69
4518 5495 2.615986 TGAAGAGGCCAGTGGTAGTA 57.384 50.000 11.74 0.00 0.00 1.82
4540 5568 1.567357 GAGGAGAAGAGCAAGGGAGT 58.433 55.000 0.00 0.00 0.00 3.85
4541 5569 1.905894 GAGGAGAAGAGCAAGGGAGTT 59.094 52.381 0.00 0.00 0.00 3.01
4542 5570 2.304470 GAGGAGAAGAGCAAGGGAGTTT 59.696 50.000 0.00 0.00 0.00 2.66
4551 5585 2.026449 AGCAAGGGAGTTTCTGATGAGG 60.026 50.000 0.00 0.00 0.00 3.86
4552 5586 2.290577 GCAAGGGAGTTTCTGATGAGGT 60.291 50.000 0.00 0.00 0.00 3.85
4553 5587 3.812167 GCAAGGGAGTTTCTGATGAGGTT 60.812 47.826 0.00 0.00 0.00 3.50
4566 5600 5.893255 TCTGATGAGGTTTAAAATGGGATGG 59.107 40.000 0.00 0.00 0.00 3.51
4569 5603 5.004361 TGAGGTTTAAAATGGGATGGTCA 57.996 39.130 0.00 0.00 0.00 4.02
4570 5604 4.770010 TGAGGTTTAAAATGGGATGGTCAC 59.230 41.667 0.00 0.00 0.00 3.67
4571 5605 4.746466 AGGTTTAAAATGGGATGGTCACA 58.254 39.130 0.00 0.00 32.34 3.58
4572 5606 5.341169 AGGTTTAAAATGGGATGGTCACAT 58.659 37.500 0.00 0.00 43.53 3.21
4578 5612 2.512692 TGGGATGGTCACATTTCTGG 57.487 50.000 0.00 0.00 37.47 3.86
4579 5613 1.710244 TGGGATGGTCACATTTCTGGT 59.290 47.619 0.00 0.00 37.47 4.00
4580 5614 2.109834 TGGGATGGTCACATTTCTGGTT 59.890 45.455 0.00 0.00 37.47 3.67
4581 5615 2.755103 GGGATGGTCACATTTCTGGTTC 59.245 50.000 0.00 0.00 37.47 3.62
4582 5616 3.420893 GGATGGTCACATTTCTGGTTCA 58.579 45.455 0.00 0.00 37.47 3.18
4583 5617 3.826157 GGATGGTCACATTTCTGGTTCAA 59.174 43.478 0.00 0.00 37.47 2.69
4584 5618 4.321230 GGATGGTCACATTTCTGGTTCAAC 60.321 45.833 0.00 0.00 37.47 3.18
4601 5657 6.882140 TGGTTCAACTTTCTCTTGTAAGAACA 59.118 34.615 0.00 0.00 35.06 3.18
4608 5664 8.819643 ACTTTCTCTTGTAAGAACATAGTCAC 57.180 34.615 0.00 0.00 35.06 3.67
4639 5698 5.975693 TTTCCCCAAAATACATCTGTGTC 57.024 39.130 0.00 0.00 39.77 3.67
4647 5706 0.613572 TACATCTGTGTCCCGAGCCA 60.614 55.000 0.00 0.00 39.77 4.75
4655 5714 3.003173 TCCCGAGCCACTTCTGGG 61.003 66.667 0.00 0.00 41.43 4.45
4673 5732 2.622942 TGGGTTTTTCAGACTCACATGC 59.377 45.455 0.00 0.00 0.00 4.06
4679 5738 4.990543 TTTCAGACTCACATGCTTTACG 57.009 40.909 0.00 0.00 0.00 3.18
4681 5740 1.394917 CAGACTCACATGCTTTACGGC 59.605 52.381 0.00 0.00 0.00 5.68
4696 5755 1.660264 CGGCTTCCGTTTTGCCAAC 60.660 57.895 0.00 0.00 46.39 3.77
4700 5759 0.461961 CTTCCGTTTTGCCAACCCAA 59.538 50.000 0.00 0.00 0.00 4.12
4710 5769 0.611896 GCCAACCCAAGGTATGCTGT 60.612 55.000 0.00 0.00 33.12 4.40
4729 5788 2.768492 GCGGCTGGAGCTTGGAATG 61.768 63.158 0.00 0.00 41.70 2.67
4732 5791 0.322816 GGCTGGAGCTTGGAATGTCA 60.323 55.000 0.00 0.00 41.70 3.58
4737 5796 2.092429 TGGAGCTTGGAATGTCATACCC 60.092 50.000 0.00 0.00 0.00 3.69
4767 5850 0.461870 TCTGCAGCACACTTGTCGTT 60.462 50.000 9.47 0.00 0.00 3.85
4802 5885 2.972713 AGCTAAAACAGAGACACCTCCA 59.027 45.455 0.00 0.00 40.30 3.86
4803 5886 3.391296 AGCTAAAACAGAGACACCTCCAA 59.609 43.478 0.00 0.00 40.30 3.53
4811 5894 3.251972 CAGAGACACCTCCAAGAAAAAGC 59.748 47.826 0.00 0.00 40.30 3.51
4817 5900 2.230660 CCTCCAAGAAAAAGCGGTCTT 58.769 47.619 0.00 0.00 34.37 3.01
4818 5901 3.181448 ACCTCCAAGAAAAAGCGGTCTTA 60.181 43.478 0.00 0.00 32.79 2.10
4819 5902 4.010349 CCTCCAAGAAAAAGCGGTCTTAT 58.990 43.478 0.00 0.00 32.79 1.73
4822 5905 4.825085 TCCAAGAAAAAGCGGTCTTATGTT 59.175 37.500 0.00 0.00 32.79 2.71
4826 5909 6.002062 AGAAAAAGCGGTCTTATGTTTCTG 57.998 37.500 0.00 0.00 36.39 3.02
4911 5994 7.849804 TGATTCAGATTTAAGCTCTGTTACC 57.150 36.000 13.68 6.13 40.79 2.85
4912 5995 6.535150 TGATTCAGATTTAAGCTCTGTTACCG 59.465 38.462 13.68 0.00 40.79 4.02
4913 5996 4.181578 TCAGATTTAAGCTCTGTTACCGC 58.818 43.478 13.68 0.00 40.79 5.68
4914 5997 4.081642 TCAGATTTAAGCTCTGTTACCGCT 60.082 41.667 13.68 0.00 40.79 5.52
4919 6002 8.202137 AGATTTAAGCTCTGTTACCGCTAATAA 58.798 33.333 0.00 0.00 32.90 1.40
4923 6006 9.820725 TTAAGCTCTGTTACCGCTAATAATTAA 57.179 29.630 0.00 0.00 32.90 1.40
4974 6057 6.717413 TGAAAACGTACGCTGTTCTTTATTT 58.283 32.000 16.72 1.11 0.00 1.40
5026 6109 3.809905 CATTTGGTAGGACCTAAGCTCC 58.190 50.000 1.75 0.63 36.49 4.70
5046 6129 5.924825 GCTCCATTTGCATTCAGGAATATTC 59.075 40.000 6.93 6.93 0.00 1.75
5117 6204 2.104170 GGTTGTGTTTCCCTTGTTCCA 58.896 47.619 0.00 0.00 0.00 3.53
5120 6207 3.593442 TGTGTTTCCCTTGTTCCAGAT 57.407 42.857 0.00 0.00 0.00 2.90
5126 6213 7.393234 TGTGTTTCCCTTGTTCCAGATATTTAG 59.607 37.037 0.00 0.00 0.00 1.85
5133 6220 7.012799 CCCTTGTTCCAGATATTTAGAGCTTTC 59.987 40.741 0.00 0.00 0.00 2.62
5134 6221 7.012799 CCTTGTTCCAGATATTTAGAGCTTTCC 59.987 40.741 0.00 0.00 0.00 3.13
5168 6256 3.629855 ACAGTGATCAGATCGACTCGATT 59.370 43.478 15.02 0.00 47.00 3.34
5257 6346 3.562141 TGTCACATACCCTTCACGTTTTG 59.438 43.478 0.00 0.00 0.00 2.44
5258 6347 3.058501 GTCACATACCCTTCACGTTTTGG 60.059 47.826 0.00 0.00 0.00 3.28
5268 6359 3.980646 TCACGTTTTGGAGGTGAAATG 57.019 42.857 0.00 0.00 46.77 2.32
5271 6363 3.066064 CACGTTTTGGAGGTGAAATGTCA 59.934 43.478 0.00 0.00 44.82 3.58
5272 6364 3.315191 ACGTTTTGGAGGTGAAATGTCAG 59.685 43.478 0.00 0.00 33.27 3.51
5293 6385 2.794350 GGGAACGAATTTTGTTGTGCTG 59.206 45.455 6.75 0.00 0.00 4.41
5294 6386 2.794350 GGAACGAATTTTGTTGTGCTGG 59.206 45.455 6.75 0.00 0.00 4.85
5323 6415 3.619483 CCAAGTTAAATGACGCCGTATGA 59.381 43.478 0.00 0.00 0.00 2.15
5327 6421 2.755836 AAATGACGCCGTATGAATGC 57.244 45.000 0.00 0.00 0.00 3.56
5351 6445 6.831769 CACATACTTGTGTTGGACTGTTATC 58.168 40.000 0.00 0.00 46.68 1.75
5354 6448 7.500892 ACATACTTGTGTTGGACTGTTATCAAA 59.499 33.333 0.00 0.00 33.85 2.69
5381 6475 8.580720 CATATATTCAGCCACAGTTAGTAGACT 58.419 37.037 0.00 0.00 0.00 3.24
5414 6508 2.629002 GTGCATTCACGAACCACCT 58.371 52.632 0.00 0.00 32.98 4.00
5419 6513 3.206150 GCATTCACGAACCACCTGATAT 58.794 45.455 0.00 0.00 0.00 1.63
5420 6514 3.002656 GCATTCACGAACCACCTGATATG 59.997 47.826 0.00 0.00 0.00 1.78
5422 6516 3.245518 TCACGAACCACCTGATATGTG 57.754 47.619 0.00 0.00 0.00 3.21
5446 6541 5.105675 GGTACCCTGTTTGTTTTCTTCACAA 60.106 40.000 0.00 0.00 32.16 3.33
5447 6542 5.476091 ACCCTGTTTGTTTTCTTCACAAA 57.524 34.783 0.00 0.00 40.93 2.83
5511 6606 2.061773 CGGTCACTTGTGTAAGCTCTG 58.938 52.381 0.46 0.00 37.43 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.527123 TGGTGGCTCCAACCGGTA 60.527 61.111 8.00 0.00 44.12 4.02
11 12 1.070105 GTACGTGTTGGTGGCTCCA 59.930 57.895 3.73 3.73 45.60 3.86
12 13 0.604578 TAGTACGTGTTGGTGGCTCC 59.395 55.000 0.00 0.00 0.00 4.70
13 14 2.443887 TTAGTACGTGTTGGTGGCTC 57.556 50.000 0.00 0.00 0.00 4.70
15 16 1.802365 CCTTTAGTACGTGTTGGTGGC 59.198 52.381 0.00 0.00 0.00 5.01
16 17 1.802365 GCCTTTAGTACGTGTTGGTGG 59.198 52.381 0.00 0.00 0.00 4.61
17 18 1.802365 GGCCTTTAGTACGTGTTGGTG 59.198 52.381 0.00 0.00 0.00 4.17
18 19 1.417145 TGGCCTTTAGTACGTGTTGGT 59.583 47.619 3.32 0.00 0.00 3.67
19 20 1.802365 GTGGCCTTTAGTACGTGTTGG 59.198 52.381 3.32 0.00 0.00 3.77
20 21 1.802365 GGTGGCCTTTAGTACGTGTTG 59.198 52.381 3.32 0.00 0.00 3.33
21 22 1.417145 TGGTGGCCTTTAGTACGTGTT 59.583 47.619 3.32 0.00 0.00 3.32
22 23 1.050204 TGGTGGCCTTTAGTACGTGT 58.950 50.000 3.32 0.00 0.00 4.49
23 24 1.435577 GTGGTGGCCTTTAGTACGTG 58.564 55.000 3.32 0.00 0.00 4.49
24 25 0.322648 GGTGGTGGCCTTTAGTACGT 59.677 55.000 3.32 0.00 0.00 3.57
25 26 0.611714 AGGTGGTGGCCTTTAGTACG 59.388 55.000 3.32 0.00 34.71 3.67
26 27 1.907255 AGAGGTGGTGGCCTTTAGTAC 59.093 52.381 3.32 0.00 39.34 2.73
27 28 2.337359 AGAGGTGGTGGCCTTTAGTA 57.663 50.000 3.32 0.00 39.34 1.82
28 29 1.446016 AAGAGGTGGTGGCCTTTAGT 58.554 50.000 3.32 0.00 39.34 2.24
29 30 2.586648 AAAGAGGTGGTGGCCTTTAG 57.413 50.000 3.32 0.00 39.34 1.85
30 31 2.983898 ACTAAAGAGGTGGTGGCCTTTA 59.016 45.455 3.32 0.00 39.34 1.85
31 32 1.780919 ACTAAAGAGGTGGTGGCCTTT 59.219 47.619 3.32 0.00 39.34 3.11
32 33 1.446016 ACTAAAGAGGTGGTGGCCTT 58.554 50.000 3.32 0.00 39.34 4.35
33 34 2.337359 TACTAAAGAGGTGGTGGCCT 57.663 50.000 3.32 0.00 42.53 5.19
34 35 2.483188 CGATACTAAAGAGGTGGTGGCC 60.483 54.545 0.00 0.00 0.00 5.36
35 36 2.483188 CCGATACTAAAGAGGTGGTGGC 60.483 54.545 0.00 0.00 0.00 5.01
36 37 2.764572 ACCGATACTAAAGAGGTGGTGG 59.235 50.000 0.00 0.00 33.37 4.61
37 38 4.430908 GAACCGATACTAAAGAGGTGGTG 58.569 47.826 0.00 0.00 35.08 4.17
38 39 3.129988 CGAACCGATACTAAAGAGGTGGT 59.870 47.826 0.00 0.00 35.08 4.16
39 40 3.129988 ACGAACCGATACTAAAGAGGTGG 59.870 47.826 0.00 0.00 35.08 4.61
40 41 4.103357 CACGAACCGATACTAAAGAGGTG 58.897 47.826 0.00 0.00 35.08 4.00
41 42 3.129988 CCACGAACCGATACTAAAGAGGT 59.870 47.826 0.00 0.00 36.66 3.85
42 43 3.703420 CCACGAACCGATACTAAAGAGG 58.297 50.000 0.00 0.00 0.00 3.69
43 44 3.114065 GCCACGAACCGATACTAAAGAG 58.886 50.000 0.00 0.00 0.00 2.85
44 45 2.492881 TGCCACGAACCGATACTAAAGA 59.507 45.455 0.00 0.00 0.00 2.52
45 46 2.883574 TGCCACGAACCGATACTAAAG 58.116 47.619 0.00 0.00 0.00 1.85
46 47 3.119065 TCATGCCACGAACCGATACTAAA 60.119 43.478 0.00 0.00 0.00 1.85
47 48 2.427812 TCATGCCACGAACCGATACTAA 59.572 45.455 0.00 0.00 0.00 2.24
48 49 2.025898 TCATGCCACGAACCGATACTA 58.974 47.619 0.00 0.00 0.00 1.82
49 50 0.821517 TCATGCCACGAACCGATACT 59.178 50.000 0.00 0.00 0.00 2.12
50 51 1.326548 GTTCATGCCACGAACCGATAC 59.673 52.381 0.00 0.00 37.40 2.24
51 52 1.647346 GTTCATGCCACGAACCGATA 58.353 50.000 0.00 0.00 37.40 2.92
52 53 2.466867 GTTCATGCCACGAACCGAT 58.533 52.632 0.00 0.00 37.40 4.18
53 54 3.960237 GTTCATGCCACGAACCGA 58.040 55.556 0.00 0.00 37.40 4.69
56 57 1.326548 GTATCGGTTCATGCCACGAAC 59.673 52.381 0.00 0.00 41.66 3.95
57 58 1.206132 AGTATCGGTTCATGCCACGAA 59.794 47.619 8.96 0.00 38.94 3.85
58 59 0.821517 AGTATCGGTTCATGCCACGA 59.178 50.000 7.66 7.66 39.85 4.35
59 60 2.502213 TAGTATCGGTTCATGCCACG 57.498 50.000 0.00 0.00 0.00 4.94
60 61 3.560068 CCTTTAGTATCGGTTCATGCCAC 59.440 47.826 0.00 0.00 0.00 5.01
61 62 3.199071 ACCTTTAGTATCGGTTCATGCCA 59.801 43.478 0.00 0.00 0.00 4.92
62 63 3.805207 ACCTTTAGTATCGGTTCATGCC 58.195 45.455 0.00 0.00 0.00 4.40
68 69 2.234414 TGGCGAACCTTTAGTATCGGTT 59.766 45.455 3.91 3.91 43.32 4.44
69 70 1.826720 TGGCGAACCTTTAGTATCGGT 59.173 47.619 0.00 0.00 35.91 4.69
70 71 2.199236 GTGGCGAACCTTTAGTATCGG 58.801 52.381 0.00 0.00 35.91 4.18
71 72 1.850441 CGTGGCGAACCTTTAGTATCG 59.150 52.381 0.00 0.00 38.28 2.92
72 73 3.155093 TCGTGGCGAACCTTTAGTATC 57.845 47.619 0.00 0.00 36.63 2.24
73 74 3.598019 TTCGTGGCGAACCTTTAGTAT 57.402 42.857 0.00 0.00 41.05 2.12
75 76 3.993382 TTCGTGGCGAACCTTTAGT 57.007 47.368 0.00 0.00 41.05 2.24
83 84 1.093972 TAGTATCGGTTCGTGGCGAA 58.906 50.000 0.00 0.00 43.75 4.70
84 85 1.093972 TTAGTATCGGTTCGTGGCGA 58.906 50.000 0.00 0.00 0.00 5.54
85 86 2.129823 ATTAGTATCGGTTCGTGGCG 57.870 50.000 0.00 0.00 0.00 5.69
86 87 3.427863 GCTTATTAGTATCGGTTCGTGGC 59.572 47.826 0.00 0.00 0.00 5.01
87 88 3.667261 CGCTTATTAGTATCGGTTCGTGG 59.333 47.826 0.00 0.00 0.00 4.94
88 89 4.285292 ACGCTTATTAGTATCGGTTCGTG 58.715 43.478 0.00 0.00 0.00 4.35
89 90 4.531332 GACGCTTATTAGTATCGGTTCGT 58.469 43.478 0.00 0.00 0.00 3.85
90 91 3.596982 CGACGCTTATTAGTATCGGTTCG 59.403 47.826 0.00 0.00 31.39 3.95
91 92 3.360168 GCGACGCTTATTAGTATCGGTTC 59.640 47.826 13.73 0.00 33.89 3.62
92 93 3.303406 GCGACGCTTATTAGTATCGGTT 58.697 45.455 13.73 0.00 33.89 4.44
93 94 2.351157 GGCGACGCTTATTAGTATCGGT 60.351 50.000 20.77 0.00 33.89 4.69
94 95 2.248487 GGCGACGCTTATTAGTATCGG 58.752 52.381 20.77 0.00 33.89 4.18
95 96 2.909244 CTGGCGACGCTTATTAGTATCG 59.091 50.000 20.77 3.38 35.37 2.92
96 97 2.662156 GCTGGCGACGCTTATTAGTATC 59.338 50.000 20.77 0.00 0.00 2.24
97 98 2.609737 GGCTGGCGACGCTTATTAGTAT 60.610 50.000 20.77 0.00 0.00 2.12
98 99 1.269413 GGCTGGCGACGCTTATTAGTA 60.269 52.381 20.77 0.00 0.00 1.82
99 100 0.529992 GGCTGGCGACGCTTATTAGT 60.530 55.000 20.77 0.00 0.00 2.24
100 101 0.249489 AGGCTGGCGACGCTTATTAG 60.249 55.000 20.77 11.20 0.00 1.73
101 102 1.000607 CTAGGCTGGCGACGCTTATTA 60.001 52.381 20.77 5.73 0.00 0.98
102 103 0.249489 CTAGGCTGGCGACGCTTATT 60.249 55.000 20.77 4.83 0.00 1.40
103 104 1.364171 CTAGGCTGGCGACGCTTAT 59.636 57.895 20.77 4.43 0.00 1.73
104 105 2.805546 CTAGGCTGGCGACGCTTA 59.194 61.111 20.77 8.44 0.00 3.09
105 106 4.821589 GCTAGGCTGGCGACGCTT 62.822 66.667 20.77 3.41 0.00 4.68
112 113 3.622060 TTCCAACGGCTAGGCTGGC 62.622 63.158 15.25 15.25 39.57 4.85
113 114 1.745489 GTTCCAACGGCTAGGCTGG 60.745 63.158 16.16 16.16 39.57 4.85
114 115 1.745489 GGTTCCAACGGCTAGGCTG 60.745 63.158 15.11 10.34 41.29 4.85
115 116 2.669240 GGTTCCAACGGCTAGGCT 59.331 61.111 15.11 0.00 0.00 4.58
116 117 2.818274 CGGTTCCAACGGCTAGGC 60.818 66.667 6.15 6.15 0.00 3.93
117 118 2.125269 CCGGTTCCAACGGCTAGG 60.125 66.667 0.00 0.00 45.34 3.02
123 124 1.864176 GTTAGTGCCGGTTCCAACG 59.136 57.895 1.90 0.00 0.00 4.10
124 125 1.571215 CCGTTAGTGCCGGTTCCAAC 61.571 60.000 1.90 2.15 40.59 3.77
125 126 1.301874 CCGTTAGTGCCGGTTCCAA 60.302 57.895 1.90 0.00 40.59 3.53
126 127 2.344500 CCGTTAGTGCCGGTTCCA 59.656 61.111 1.90 0.00 40.59 3.53
131 132 5.775513 ACTAATGTGACCGTTAGTGCCGG 62.776 52.174 0.00 0.00 46.67 6.13
132 133 1.924524 CTAATGTGACCGTTAGTGCCG 59.075 52.381 0.00 0.00 36.04 5.69
133 134 2.968675 ACTAATGTGACCGTTAGTGCC 58.031 47.619 8.94 0.00 46.67 5.01
144 145 2.552599 TTGAACCGGCACTAATGTGA 57.447 45.000 0.00 0.00 46.55 3.58
145 146 3.848272 AATTGAACCGGCACTAATGTG 57.152 42.857 0.00 0.00 46.37 3.21
146 147 4.328536 TGTAATTGAACCGGCACTAATGT 58.671 39.130 0.00 0.00 0.00 2.71
147 148 4.955925 TGTAATTGAACCGGCACTAATG 57.044 40.909 0.00 0.00 0.00 1.90
148 149 5.336134 GGTTTGTAATTGAACCGGCACTAAT 60.336 40.000 0.00 0.00 36.31 1.73
149 150 4.023021 GGTTTGTAATTGAACCGGCACTAA 60.023 41.667 0.00 0.00 36.31 2.24
150 151 3.502979 GGTTTGTAATTGAACCGGCACTA 59.497 43.478 0.00 0.00 36.31 2.74
151 152 2.295070 GGTTTGTAATTGAACCGGCACT 59.705 45.455 0.00 0.00 36.31 4.40
152 153 2.668250 GGTTTGTAATTGAACCGGCAC 58.332 47.619 0.00 0.00 36.31 5.01
157 158 4.841443 AGTTCCGGTTTGTAATTGAACC 57.159 40.909 0.00 9.10 41.47 3.62
158 159 7.586747 TCATTAGTTCCGGTTTGTAATTGAAC 58.413 34.615 0.00 0.00 33.94 3.18
159 160 7.446013 ACTCATTAGTTCCGGTTTGTAATTGAA 59.554 33.333 0.00 0.00 29.00 2.69
160 161 6.938030 ACTCATTAGTTCCGGTTTGTAATTGA 59.062 34.615 0.00 0.00 29.00 2.57
161 162 7.141100 ACTCATTAGTTCCGGTTTGTAATTG 57.859 36.000 0.00 0.44 29.00 2.32
162 163 7.754851 AACTCATTAGTTCCGGTTTGTAATT 57.245 32.000 0.00 0.00 42.42 1.40
163 164 7.446013 TGAAACTCATTAGTTCCGGTTTGTAAT 59.554 33.333 0.00 0.00 45.37 1.89
164 165 6.766944 TGAAACTCATTAGTTCCGGTTTGTAA 59.233 34.615 0.00 0.00 45.37 2.41
165 166 6.203338 GTGAAACTCATTAGTTCCGGTTTGTA 59.797 38.462 0.00 0.00 45.37 2.41
166 167 5.008316 GTGAAACTCATTAGTTCCGGTTTGT 59.992 40.000 0.00 0.00 45.37 2.83
167 168 5.008217 TGTGAAACTCATTAGTTCCGGTTTG 59.992 40.000 0.00 0.00 45.37 2.93
168 169 5.127491 TGTGAAACTCATTAGTTCCGGTTT 58.873 37.500 0.00 0.00 45.37 3.27
169 170 4.710324 TGTGAAACTCATTAGTTCCGGTT 58.290 39.130 0.00 0.00 45.37 4.44
170 171 4.345859 TGTGAAACTCATTAGTTCCGGT 57.654 40.909 0.00 0.00 45.37 5.28
171 172 5.880054 AATGTGAAACTCATTAGTTCCGG 57.120 39.130 0.00 0.00 45.37 5.14
172 173 6.456988 GCCTAATGTGAAACTCATTAGTTCCG 60.457 42.308 21.18 12.95 45.37 4.30
173 174 6.183360 GGCCTAATGTGAAACTCATTAGTTCC 60.183 42.308 21.18 18.59 45.37 3.62
174 175 6.183360 GGGCCTAATGTGAAACTCATTAGTTC 60.183 42.308 21.18 15.70 45.37 3.01
176 177 5.044846 AGGGCCTAATGTGAAACTCATTAGT 60.045 40.000 2.82 9.05 46.13 2.24
177 178 5.440610 AGGGCCTAATGTGAAACTCATTAG 58.559 41.667 2.82 18.45 46.64 1.73
178 179 5.450818 AGGGCCTAATGTGAAACTCATTA 57.549 39.130 2.82 0.00 38.04 1.90
179 180 4.322057 AGGGCCTAATGTGAAACTCATT 57.678 40.909 2.82 0.00 38.04 2.57
180 181 4.322057 AAGGGCCTAATGTGAAACTCAT 57.678 40.909 6.41 0.00 38.04 2.90
181 182 3.806949 AAGGGCCTAATGTGAAACTCA 57.193 42.857 6.41 0.00 38.04 3.41
182 183 5.243954 AGAAAAAGGGCCTAATGTGAAACTC 59.756 40.000 6.41 0.00 38.04 3.01
183 184 5.147767 AGAAAAAGGGCCTAATGTGAAACT 58.852 37.500 6.41 0.00 38.04 2.66
184 185 5.468540 AGAAAAAGGGCCTAATGTGAAAC 57.531 39.130 6.41 0.00 37.35 2.78
185 186 6.311735 AGTAGAAAAAGGGCCTAATGTGAAA 58.688 36.000 6.41 0.00 0.00 2.69
186 187 5.887754 AGTAGAAAAAGGGCCTAATGTGAA 58.112 37.500 6.41 0.00 0.00 3.18
187 188 5.514500 AGTAGAAAAAGGGCCTAATGTGA 57.486 39.130 6.41 0.00 0.00 3.58
188 189 6.316390 CACTAGTAGAAAAAGGGCCTAATGTG 59.684 42.308 6.41 1.23 0.00 3.21
189 190 6.415573 CACTAGTAGAAAAAGGGCCTAATGT 58.584 40.000 6.41 0.00 0.00 2.71
190 191 5.823045 CCACTAGTAGAAAAAGGGCCTAATG 59.177 44.000 6.41 0.00 0.00 1.90
191 192 5.491439 ACCACTAGTAGAAAAAGGGCCTAAT 59.509 40.000 6.41 0.00 0.00 1.73
192 193 4.848086 ACCACTAGTAGAAAAAGGGCCTAA 59.152 41.667 6.41 0.00 0.00 2.69
193 194 4.432316 ACCACTAGTAGAAAAAGGGCCTA 58.568 43.478 6.41 0.00 0.00 3.93
194 195 3.257578 ACCACTAGTAGAAAAAGGGCCT 58.742 45.455 0.00 0.00 0.00 5.19
195 196 3.715638 ACCACTAGTAGAAAAAGGGCC 57.284 47.619 3.59 0.00 0.00 5.80
196 197 5.413833 GGTTAACCACTAGTAGAAAAAGGGC 59.586 44.000 20.12 0.00 35.64 5.19
197 198 6.536447 TGGTTAACCACTAGTAGAAAAAGGG 58.464 40.000 23.69 0.00 42.01 3.95
214 215 6.688637 AGTGTCTTTGTAAGGTTGGTTAAC 57.311 37.500 0.00 0.00 36.04 2.01
215 216 7.662669 GGATAGTGTCTTTGTAAGGTTGGTTAA 59.337 37.037 0.00 0.00 0.00 2.01
216 217 7.163441 GGATAGTGTCTTTGTAAGGTTGGTTA 58.837 38.462 0.00 0.00 0.00 2.85
217 218 6.002082 GGATAGTGTCTTTGTAAGGTTGGTT 58.998 40.000 0.00 0.00 0.00 3.67
218 219 5.072600 TGGATAGTGTCTTTGTAAGGTTGGT 59.927 40.000 0.00 0.00 0.00 3.67
219 220 5.411669 GTGGATAGTGTCTTTGTAAGGTTGG 59.588 44.000 0.00 0.00 0.00 3.77
220 221 5.995282 TGTGGATAGTGTCTTTGTAAGGTTG 59.005 40.000 0.00 0.00 0.00 3.77
221 222 6.182507 TGTGGATAGTGTCTTTGTAAGGTT 57.817 37.500 0.00 0.00 0.00 3.50
222 223 5.818678 TGTGGATAGTGTCTTTGTAAGGT 57.181 39.130 0.00 0.00 0.00 3.50
223 224 7.504924 TTTTGTGGATAGTGTCTTTGTAAGG 57.495 36.000 0.00 0.00 0.00 2.69
224 225 9.398170 CATTTTTGTGGATAGTGTCTTTGTAAG 57.602 33.333 0.00 0.00 0.00 2.34
225 226 9.126151 TCATTTTTGTGGATAGTGTCTTTGTAA 57.874 29.630 0.00 0.00 0.00 2.41
226 227 8.684386 TCATTTTTGTGGATAGTGTCTTTGTA 57.316 30.769 0.00 0.00 0.00 2.41
227 228 7.581213 TCATTTTTGTGGATAGTGTCTTTGT 57.419 32.000 0.00 0.00 0.00 2.83
228 229 8.870160 TTTCATTTTTGTGGATAGTGTCTTTG 57.130 30.769 0.00 0.00 0.00 2.77
229 230 8.912988 TCTTTCATTTTTGTGGATAGTGTCTTT 58.087 29.630 0.00 0.00 0.00 2.52
236 237 7.546667 CCATGGTTCTTTCATTTTTGTGGATAG 59.453 37.037 2.57 0.00 0.00 2.08
241 242 6.047870 TGACCATGGTTCTTTCATTTTTGTG 58.952 36.000 20.85 0.00 0.00 3.33
248 249 5.447778 AGAGATGACCATGGTTCTTTCAT 57.552 39.130 20.85 16.96 0.00 2.57
255 256 4.271807 TCCTCTAGAGATGACCATGGTT 57.728 45.455 20.85 3.15 0.00 3.67
308 309 0.246635 CGGGTCGAAATCTGGTCAGT 59.753 55.000 0.00 0.00 0.00 3.41
321 322 0.803380 CTACGTTTAAGCCCGGGTCG 60.803 60.000 24.63 18.31 0.00 4.79
322 323 0.532115 TCTACGTTTAAGCCCGGGTC 59.468 55.000 24.63 14.90 0.00 4.46
323 324 0.975887 TTCTACGTTTAAGCCCGGGT 59.024 50.000 24.63 5.39 0.00 5.28
324 325 1.066645 ACTTCTACGTTTAAGCCCGGG 60.067 52.381 19.09 19.09 0.00 5.73
340 341 3.056313 GCATCTTGCCGGCCACTTC 62.056 63.158 26.77 4.85 37.42 3.01
463 464 7.334671 TGGCTCAATGATGTTATTTTACGTACA 59.665 33.333 0.00 0.00 0.00 2.90
499 502 4.045636 AGTTGCAAGCTTTGGTTAACAG 57.954 40.909 8.10 0.00 0.00 3.16
530 534 2.124507 TAACTGGGTGCTGGGTGCTC 62.125 60.000 0.00 0.00 43.37 4.26
537 541 1.303317 GGTGGGTAACTGGGTGCTG 60.303 63.158 0.00 0.00 0.00 4.41
612 635 6.054295 ACTACTCAAGATAATCTCCGTACGT 58.946 40.000 15.21 0.00 0.00 3.57
613 636 6.542574 ACTACTCAAGATAATCTCCGTACG 57.457 41.667 8.69 8.69 0.00 3.67
829 1100 1.682451 GCAGGCACATGAATGGCCAT 61.682 55.000 14.09 14.09 46.05 4.40
1119 1456 1.273759 TGCTGGTGAGCTCAGATTCT 58.726 50.000 18.89 0.00 46.39 2.40
1234 1571 4.336889 TGAACTTGTCGAAGATGTCCTT 57.663 40.909 0.00 0.00 40.67 3.36
1587 1987 6.295802 CCAATCCACCAAAACCAACAATAGAT 60.296 38.462 0.00 0.00 0.00 1.98
1655 2055 5.163513 CGAAAGCCTTACAATCAAATTGCT 58.836 37.500 0.00 0.00 43.98 3.91
1945 2364 1.247567 AGGATTGTTCAAGCCAACCG 58.752 50.000 19.58 0.00 0.00 4.44
1949 2368 5.076182 TGATTGTAAGGATTGTTCAAGCCA 58.924 37.500 19.58 1.64 0.00 4.75
2041 2513 8.253113 AGTTAATGAAGGATTTAGGCACAAATG 58.747 33.333 2.28 0.00 0.00 2.32
2249 3104 6.835488 ACTGGATCACAAGCAACCATAATATT 59.165 34.615 0.00 0.00 0.00 1.28
2588 3512 2.669391 GCAATTGTTCTCTGGGAAAGCG 60.669 50.000 7.40 0.00 35.51 4.68
2863 3787 4.471386 CCTTCTCCCACTCTTCCTTGATAA 59.529 45.833 0.00 0.00 0.00 1.75
3152 4078 0.478072 AGCCAATGTCCACTGGTTGA 59.522 50.000 0.00 0.00 34.97 3.18
3258 4184 0.625849 CTTTGGCCTCCACCTACCAT 59.374 55.000 3.32 0.00 30.78 3.55
3282 4211 5.699001 GCCGAATAAAACCCTGTTGATTTTT 59.301 36.000 0.00 0.00 0.00 1.94
3290 4219 1.310216 GCCGCCGAATAAAACCCTGT 61.310 55.000 0.00 0.00 0.00 4.00
3357 4286 5.837437 AGTTCGAACATGGCTTAGATCTAG 58.163 41.667 28.78 0.00 0.00 2.43
3408 4337 0.961019 TCAAGCCTTGGCATGTGTTC 59.039 50.000 14.54 0.00 0.00 3.18
3414 4343 2.226962 AACAGATCAAGCCTTGGCAT 57.773 45.000 14.54 0.00 0.00 4.40
3419 4348 3.494332 AGCTTCAAACAGATCAAGCCTT 58.506 40.909 9.01 0.00 41.92 4.35
3422 4351 4.848299 CGTAAAGCTTCAAACAGATCAAGC 59.152 41.667 0.00 5.32 41.38 4.01
3430 4359 5.122554 TCAAGAACACGTAAAGCTTCAAACA 59.877 36.000 0.00 0.00 0.00 2.83
3566 4495 8.293867 GTCTCTAGATTAGTTAGCATCACGATT 58.706 37.037 0.00 0.00 0.00 3.34
3580 4509 8.910351 CCCAAAAATTAGGGTCTCTAGATTAG 57.090 38.462 0.00 0.00 40.34 1.73
3616 4545 1.220206 CCAGCAGGCGACTCTTGAT 59.780 57.895 0.00 0.00 40.21 2.57
3617 4546 2.659016 CCAGCAGGCGACTCTTGA 59.341 61.111 0.00 0.00 40.21 3.02
3666 4595 7.730084 TCTGATAGAGTCAACCAATATCCTTG 58.270 38.462 0.00 0.00 36.14 3.61
3683 4612 3.654146 TCCCCAATCCCATCTGATAGA 57.346 47.619 0.00 0.00 0.00 1.98
3687 4619 3.885669 TCATATCCCCAATCCCATCTGA 58.114 45.455 0.00 0.00 0.00 3.27
3967 4921 0.545646 AAGAGAAGATGGCAGAGGGC 59.454 55.000 0.00 0.00 43.74 5.19
4009 4963 2.882137 GGAAACTTGGTGAACGAATCCA 59.118 45.455 0.00 0.00 0.00 3.41
4080 5043 7.658167 CAGATCATCTTCTGTCATTTCAGCTAT 59.342 37.037 0.00 0.00 38.64 2.97
4176 5141 3.420893 TCAGGAAAGAATTGCGTTGGAT 58.579 40.909 0.00 0.00 31.21 3.41
4366 5337 7.924947 TCGCATCTTCATCATCAAGATATATCC 59.075 37.037 9.18 0.00 38.33 2.59
4497 5474 1.834263 ACTACCACTGGCCTCTTCATC 59.166 52.381 3.32 0.00 0.00 2.92
4506 5483 1.134560 CTCCTCGTTACTACCACTGGC 59.865 57.143 0.00 0.00 0.00 4.85
4518 5495 0.610687 CCCTTGCTCTTCTCCTCGTT 59.389 55.000 0.00 0.00 0.00 3.85
4540 5568 7.093377 CCATCCCATTTTAAACCTCATCAGAAA 60.093 37.037 0.00 0.00 0.00 2.52
4541 5569 6.380846 CCATCCCATTTTAAACCTCATCAGAA 59.619 38.462 0.00 0.00 0.00 3.02
4542 5570 5.893255 CCATCCCATTTTAAACCTCATCAGA 59.107 40.000 0.00 0.00 0.00 3.27
4551 5585 7.331687 CAGAAATGTGACCATCCCATTTTAAAC 59.668 37.037 1.63 0.00 38.53 2.01
4552 5586 7.385267 CAGAAATGTGACCATCCCATTTTAAA 58.615 34.615 1.63 0.00 38.53 1.52
4553 5587 6.070881 CCAGAAATGTGACCATCCCATTTTAA 60.071 38.462 1.63 0.00 38.53 1.52
4566 5600 6.038714 AGAGAAAGTTGAACCAGAAATGTGAC 59.961 38.462 0.00 0.00 0.00 3.67
4569 5603 6.378280 ACAAGAGAAAGTTGAACCAGAAATGT 59.622 34.615 0.00 0.00 0.00 2.71
4570 5604 6.799512 ACAAGAGAAAGTTGAACCAGAAATG 58.200 36.000 0.00 0.00 0.00 2.32
4571 5605 8.519799 TTACAAGAGAAAGTTGAACCAGAAAT 57.480 30.769 0.00 0.00 0.00 2.17
4572 5606 7.827236 TCTTACAAGAGAAAGTTGAACCAGAAA 59.173 33.333 0.00 0.00 0.00 2.52
4574 5608 6.884832 TCTTACAAGAGAAAGTTGAACCAGA 58.115 36.000 0.00 0.00 0.00 3.86
4575 5609 7.065803 TGTTCTTACAAGAGAAAGTTGAACCAG 59.934 37.037 0.00 0.00 37.40 4.00
4576 5610 6.882140 TGTTCTTACAAGAGAAAGTTGAACCA 59.118 34.615 0.00 0.00 37.40 3.67
4577 5611 7.316544 TGTTCTTACAAGAGAAAGTTGAACC 57.683 36.000 0.00 0.00 37.40 3.62
4579 5613 9.832445 ACTATGTTCTTACAAGAGAAAGTTGAA 57.168 29.630 0.00 0.00 37.40 2.69
4580 5614 9.477484 GACTATGTTCTTACAAGAGAAAGTTGA 57.523 33.333 0.00 0.00 37.40 3.18
4581 5615 9.261180 TGACTATGTTCTTACAAGAGAAAGTTG 57.739 33.333 0.00 0.00 37.40 3.16
4582 5616 9.262358 GTGACTATGTTCTTACAAGAGAAAGTT 57.738 33.333 0.00 0.00 37.40 2.66
4583 5617 8.421784 TGTGACTATGTTCTTACAAGAGAAAGT 58.578 33.333 0.00 0.00 37.40 2.66
4584 5618 8.818141 TGTGACTATGTTCTTACAAGAGAAAG 57.182 34.615 0.00 0.00 37.40 2.62
4630 5689 2.981302 TGGCTCGGGACACAGATG 59.019 61.111 0.00 0.00 0.00 2.90
4639 5698 2.411765 AAACCCAGAAGTGGCTCGGG 62.412 60.000 0.00 0.00 43.44 5.14
4647 5706 4.200092 GTGAGTCTGAAAAACCCAGAAGT 58.800 43.478 0.00 0.00 41.72 3.01
4655 5714 5.621228 CGTAAAGCATGTGAGTCTGAAAAAC 59.379 40.000 0.00 0.00 0.00 2.43
4659 5718 3.325870 CCGTAAAGCATGTGAGTCTGAA 58.674 45.455 0.00 0.00 0.00 3.02
4681 5740 0.461961 TTGGGTTGGCAAAACGGAAG 59.538 50.000 0.00 0.00 0.00 3.46
4686 5745 2.870035 GCATACCTTGGGTTGGCAAAAC 60.870 50.000 0.00 0.00 37.09 2.43
4691 5750 0.611896 ACAGCATACCTTGGGTTGGC 60.612 55.000 0.00 0.00 37.09 4.52
4696 5755 2.114670 CCGCACAGCATACCTTGGG 61.115 63.158 0.00 0.00 0.00 4.12
4700 5759 2.124983 CAGCCGCACAGCATACCT 60.125 61.111 0.00 0.00 34.23 3.08
4710 5769 3.272364 ATTCCAAGCTCCAGCCGCA 62.272 57.895 0.00 0.00 43.38 5.69
4722 5781 3.053693 CCTCCTTGGGTATGACATTCCAA 60.054 47.826 12.61 15.11 37.65 3.53
4729 5788 0.912486 AGTGCCTCCTTGGGTATGAC 59.088 55.000 0.00 0.00 36.00 3.06
4732 5791 1.207791 CAGAGTGCCTCCTTGGGTAT 58.792 55.000 0.00 0.00 36.00 2.73
4737 5796 2.039405 GCTGCAGAGTGCCTCCTTG 61.039 63.158 20.43 0.00 44.23 3.61
4748 5831 0.461870 AACGACAAGTGTGCTGCAGA 60.462 50.000 20.43 0.00 0.00 4.26
4749 5832 0.316442 CAACGACAAGTGTGCTGCAG 60.316 55.000 10.11 10.11 0.00 4.41
4753 5836 1.137086 AGACTCAACGACAAGTGTGCT 59.863 47.619 0.00 0.00 0.00 4.40
4755 5838 2.809446 TGAGACTCAACGACAAGTGTG 58.191 47.619 1.64 0.00 0.00 3.82
4756 5839 3.187700 GTTGAGACTCAACGACAAGTGT 58.812 45.455 27.76 0.00 45.88 3.55
4767 5850 7.497595 TCTGTTTTAGCTTTAGTTGAGACTCA 58.502 34.615 0.00 0.00 37.33 3.41
4779 5862 4.141482 TGGAGGTGTCTCTGTTTTAGCTTT 60.141 41.667 0.00 0.00 39.86 3.51
4783 5866 5.215252 TCTTGGAGGTGTCTCTGTTTTAG 57.785 43.478 0.00 0.00 39.86 1.85
4785 5868 4.503714 TTCTTGGAGGTGTCTCTGTTTT 57.496 40.909 0.00 0.00 39.86 2.43
4789 5872 3.251972 GCTTTTTCTTGGAGGTGTCTCTG 59.748 47.826 0.00 0.00 39.86 3.35
4802 5885 6.039382 ACAGAAACATAAGACCGCTTTTTCTT 59.961 34.615 0.00 0.00 36.94 2.52
4803 5886 5.531287 ACAGAAACATAAGACCGCTTTTTCT 59.469 36.000 0.00 0.00 38.38 2.52
4811 5894 4.988540 TCAGTTGACAGAAACATAAGACCG 59.011 41.667 0.00 0.00 32.21 4.79
4846 5929 4.334443 GCAATCAAACACTGTATGTAGCG 58.666 43.478 0.00 0.00 42.31 4.26
4847 5930 4.155826 TGGCAATCAAACACTGTATGTAGC 59.844 41.667 0.00 0.00 42.31 3.58
4923 6006 8.989811 GACTACAATGTCTGATAGTGGGAACCT 61.990 44.444 6.79 0.00 40.84 3.50
4974 6057 3.709834 TGGGGACAGAGTATGAGCA 57.290 52.632 0.00 0.00 35.01 4.26
5046 6129 6.237942 CGTACAGAAATCAAGTATTCAGCAGG 60.238 42.308 0.00 0.00 0.00 4.85
5102 6189 7.695055 TCTAAATATCTGGAACAAGGGAAACA 58.305 34.615 0.00 0.00 38.70 2.83
5126 6213 6.091441 CACTGTACAGTAATTCAGGAAAGCTC 59.909 42.308 27.48 0.00 40.20 4.09
5133 6220 6.867550 TCTGATCACTGTACAGTAATTCAGG 58.132 40.000 33.94 24.76 40.20 3.86
5134 6221 7.378194 CGATCTGATCACTGTACAGTAATTCAG 59.622 40.741 31.92 31.92 40.20 3.02
5168 6256 0.179006 TAACACACAGGCCATGCACA 60.179 50.000 5.01 0.00 0.00 4.57
5257 6346 2.437413 GTTCCCTGACATTTCACCTCC 58.563 52.381 0.00 0.00 0.00 4.30
5258 6347 2.076863 CGTTCCCTGACATTTCACCTC 58.923 52.381 0.00 0.00 0.00 3.85
5268 6359 4.041723 CACAACAAAATTCGTTCCCTGAC 58.958 43.478 0.00 0.00 0.00 3.51
5271 6363 2.693074 AGCACAACAAAATTCGTTCCCT 59.307 40.909 0.00 0.00 0.00 4.20
5272 6364 2.794350 CAGCACAACAAAATTCGTTCCC 59.206 45.455 0.00 0.00 0.00 3.97
5351 6445 8.213518 ACTAACTGTGGCTGAATATATGTTTG 57.786 34.615 0.00 0.00 0.00 2.93
5354 6448 8.361139 GTCTACTAACTGTGGCTGAATATATGT 58.639 37.037 0.00 0.00 0.00 2.29
5381 6475 2.337170 CACGCGACCCTGTGTACA 59.663 61.111 15.93 0.00 0.00 2.90
5383 6477 2.443260 AATGCACGCGACCCTGTGTA 62.443 55.000 15.93 0.00 38.36 2.90
5385 6479 3.027170 GAATGCACGCGACCCTGTG 62.027 63.158 15.93 0.00 39.10 3.66
5386 6480 2.742372 GAATGCACGCGACCCTGT 60.742 61.111 15.93 0.00 0.00 4.00
5387 6481 2.741985 TGAATGCACGCGACCCTG 60.742 61.111 15.93 0.22 0.00 4.45
5388 6482 2.742372 GTGAATGCACGCGACCCT 60.742 61.111 15.93 0.00 34.94 4.34
5420 6514 9.395898 TTGTGAAGAAAACAAACAGGGTACCAC 62.396 40.741 15.35 3.04 42.60 4.16
5422 6516 5.105675 TTGTGAAGAAAACAAACAGGGTACC 60.106 40.000 2.17 2.17 41.25 3.34
5511 6606 3.488310 CAGAAATAATCGCCAATGCAAGC 59.512 43.478 0.00 0.00 37.32 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.