Multiple sequence alignment - TraesCS5D01G547700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G547700 chr5D 100.000 2804 0 0 1 2804 555650929 555648126 0.000000e+00 5179.0
1 TraesCS5D01G547700 chr5D 92.278 1787 126 6 503 2287 556061537 556059761 0.000000e+00 2525.0
2 TraesCS5D01G547700 chr5D 86.815 493 33 18 2283 2755 556054304 556053824 3.200000e-144 521.0
3 TraesCS5D01G547700 chr5D 97.674 43 1 0 459 501 41889046 41889088 1.080000e-09 75.0
4 TraesCS5D01G547700 chr5B 91.465 2062 151 17 503 2543 695659151 695661208 0.000000e+00 2809.0
5 TraesCS5D01G547700 chr5B 75.146 515 73 27 3 506 79421677 79422147 1.030000e-44 191.0
6 TraesCS5D01G547700 chr5B 87.931 116 14 0 392 507 115631968 115631853 1.350000e-28 137.0
7 TraesCS5D01G547700 chr4A 82.205 1270 202 17 503 1755 740060826 740059564 0.000000e+00 1072.0
8 TraesCS5D01G547700 chr4A 82.126 1270 203 17 503 1755 733926673 733925411 0.000000e+00 1066.0
9 TraesCS5D01G547700 chr4A 81.761 1272 204 19 503 1755 742269217 742267955 0.000000e+00 1038.0
10 TraesCS5D01G547700 chr7D 81.761 1272 202 21 504 1755 2430486 2431747 0.000000e+00 1037.0
11 TraesCS5D01G547700 chrUn 79.030 1278 248 14 503 1768 309401243 309399974 0.000000e+00 857.0
12 TraesCS5D01G547700 chrUn 79.317 967 190 9 503 1462 90571004 90570041 0.000000e+00 669.0
13 TraesCS5D01G547700 chrUn 79.111 967 192 9 503 1462 342775350 342776313 0.000000e+00 658.0
14 TraesCS5D01G547700 chr2B 92.287 376 21 6 1 376 794150648 794151015 6.880000e-146 527.0
15 TraesCS5D01G547700 chr2B 91.209 273 9 9 252 512 794151014 794151283 9.550000e-95 357.0
16 TraesCS5D01G547700 chr2B 95.238 42 2 0 460 501 200645444 200645403 1.800000e-07 67.6
17 TraesCS5D01G547700 chr1B 86.282 503 41 11 3 501 645271724 645272202 3.200000e-144 521.0
18 TraesCS5D01G547700 chr2D 85.789 380 42 7 3 374 37026614 37026989 2.620000e-105 392.0
19 TraesCS5D01G547700 chr2D 86.345 249 31 3 106 352 469114297 469114544 4.600000e-68 268.0
20 TraesCS5D01G547700 chr1A 90.991 222 16 3 283 503 575233482 575233264 2.110000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G547700 chr5D 555648126 555650929 2803 True 5179 5179 100.000 1 2804 1 chr5D.!!$R1 2803
1 TraesCS5D01G547700 chr5D 556059761 556061537 1776 True 2525 2525 92.278 503 2287 1 chr5D.!!$R3 1784
2 TraesCS5D01G547700 chr5B 695659151 695661208 2057 False 2809 2809 91.465 503 2543 1 chr5B.!!$F2 2040
3 TraesCS5D01G547700 chr4A 740059564 740060826 1262 True 1072 1072 82.205 503 1755 1 chr4A.!!$R2 1252
4 TraesCS5D01G547700 chr4A 733925411 733926673 1262 True 1066 1066 82.126 503 1755 1 chr4A.!!$R1 1252
5 TraesCS5D01G547700 chr4A 742267955 742269217 1262 True 1038 1038 81.761 503 1755 1 chr4A.!!$R3 1252
6 TraesCS5D01G547700 chr7D 2430486 2431747 1261 False 1037 1037 81.761 504 1755 1 chr7D.!!$F1 1251
7 TraesCS5D01G547700 chrUn 309399974 309401243 1269 True 857 857 79.030 503 1768 1 chrUn.!!$R2 1265
8 TraesCS5D01G547700 chrUn 90570041 90571004 963 True 669 669 79.317 503 1462 1 chrUn.!!$R1 959
9 TraesCS5D01G547700 chrUn 342775350 342776313 963 False 658 658 79.111 503 1462 1 chrUn.!!$F1 959
10 TraesCS5D01G547700 chr2B 794150648 794151283 635 False 442 527 91.748 1 512 2 chr2B.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.179067 AAACCGACCAGCGAAGAACA 60.179 50.0 0.0 0.0 44.57 3.18 F
429 561 0.396695 GGAGACCATACGGAGGTGGA 60.397 60.0 0.0 0.0 40.09 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1228 1.414181 GATGGAGGCTTGCTACAGCTA 59.586 52.381 2.44 0.0 42.66 3.32 R
2408 2568 0.478072 TCTGCAAAGAAAGGCCAGGA 59.522 50.000 5.01 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 0.942252 AAAACCGACCAGCGAAGAAC 59.058 50.000 0.00 0.00 44.57 3.01
158 159 0.179067 AAACCGACCAGCGAAGAACA 60.179 50.000 0.00 0.00 44.57 3.18
201 202 1.224965 TGTAACCCAAAACGTACGCC 58.775 50.000 16.72 0.00 0.00 5.68
205 206 2.385091 CCCAAAACGTACGCCTCCG 61.385 63.158 16.72 0.00 41.14 4.63
211 212 1.518056 AACGTACGCCTCCGAGTTGA 61.518 55.000 16.72 0.00 38.29 3.18
215 216 2.478370 CGTACGCCTCCGAGTTGATTAA 60.478 50.000 0.52 0.00 38.29 1.40
253 254 0.602638 TTGAGGTTGCGTGCTCGAAT 60.603 50.000 13.13 0.00 39.71 3.34
267 268 3.386402 TGCTCGAATCCCATATGTGTACA 59.614 43.478 1.24 0.00 0.00 2.90
346 468 1.918293 ACACTGGATGGGAAGGCGA 60.918 57.895 0.00 0.00 0.00 5.54
380 502 6.869388 TGCAAACGAGTATGTGTACAATTCTA 59.131 34.615 0.00 0.00 33.09 2.10
429 561 0.396695 GGAGACCATACGGAGGTGGA 60.397 60.000 0.00 0.00 40.09 4.02
460 592 3.118956 CCTCTCAAAAGACGATACTGCCT 60.119 47.826 0.00 0.00 0.00 4.75
508 641 3.536158 CGAAGCGGAACTCAAAAATCA 57.464 42.857 0.00 0.00 0.00 2.57
514 647 5.464168 AGCGGAACTCAAAAATCATTCAAG 58.536 37.500 0.00 0.00 0.00 3.02
565 698 5.391523 CGTGTCCAAGTCAAGTGAAGAAAAA 60.392 40.000 0.00 0.00 0.00 1.94
642 775 0.445436 CGACTCTCCATGCAAAGCAC 59.555 55.000 0.00 0.00 43.04 4.40
692 825 3.141398 GGCATGAACTTGTCTCAAGTGA 58.859 45.455 14.48 6.51 0.00 3.41
820 956 9.159364 CATAACCATCTGAATGACATATGTAGG 57.841 37.037 8.71 2.88 34.61 3.18
847 983 5.412904 GCTTGTACTGAAGTATTTGAGCCTT 59.587 40.000 0.00 0.00 32.54 4.35
874 1010 1.707427 ACAGAGGTTGCCAAGATTCCT 59.293 47.619 0.00 0.00 0.00 3.36
875 1011 2.912956 ACAGAGGTTGCCAAGATTCCTA 59.087 45.455 0.00 0.00 0.00 2.94
916 1052 9.515020 CTTCAGTATCTAGAAACTCTTGACATC 57.485 37.037 0.00 0.00 31.55 3.06
925 1061 1.821753 ACTCTTGACATCAGGGAGACG 59.178 52.381 15.91 0.00 34.26 4.18
994 1130 1.211457 AGCATGCTTGGAGGGAGTAAG 59.789 52.381 16.30 0.00 0.00 2.34
1036 1172 5.659440 AGTTGCCTCAAGAGAAAAACAAA 57.341 34.783 0.00 0.00 0.00 2.83
1091 1228 0.755686 GAGATCACCGAGGGCTCAAT 59.244 55.000 0.00 0.00 0.00 2.57
1152 1289 4.935352 ACTTGCCATTTACAAGCTCAAA 57.065 36.364 3.52 0.00 46.81 2.69
1153 1290 4.874970 ACTTGCCATTTACAAGCTCAAAG 58.125 39.130 3.52 0.00 46.81 2.77
1156 1293 5.371115 TGCCATTTACAAGCTCAAAGTAC 57.629 39.130 0.00 0.00 0.00 2.73
1182 1319 1.546476 GGTAGTCAGACCTCCACACAG 59.454 57.143 0.00 0.00 36.47 3.66
1232 1369 3.753434 CGGCCTGCAGACTCTCGT 61.753 66.667 17.39 0.00 0.00 4.18
1233 1370 2.659610 GGCCTGCAGACTCTCGTT 59.340 61.111 17.39 0.00 0.00 3.85
1308 1445 1.417890 CCAAGATACCTCATCGCCCTT 59.582 52.381 0.00 0.00 38.81 3.95
1339 1476 1.538950 GCAAGTTGGAAAGAGCTCCAG 59.461 52.381 10.93 0.00 46.20 3.86
1359 1496 6.644347 TCCAGAGTGGATCAAGAATCTTAAC 58.356 40.000 0.00 0.00 42.67 2.01
1430 1567 0.323908 AAGCTCCTCTGCGACCTACT 60.324 55.000 0.00 0.00 38.13 2.57
1485 1622 0.603707 CGAAGCAGCACCAGAAGGAA 60.604 55.000 0.00 0.00 38.69 3.36
1513 1650 6.894103 AGAGGACATGCTTCAGGAAAATAAAT 59.106 34.615 0.00 0.00 0.00 1.40
1648 1797 2.560542 GCACTGGAGAGGATCGATATGT 59.439 50.000 0.00 0.00 42.67 2.29
1670 1819 0.831711 TTCCAAGCCTTTGAAGGGGC 60.832 55.000 11.53 0.00 46.56 5.80
1745 1894 2.156917 TCAAGCAGATGAAGCAACCAG 58.843 47.619 0.00 0.00 0.00 4.00
1775 1924 7.831691 TGGTTGGATATCTGAAGAAAAACAA 57.168 32.000 2.05 0.00 0.00 2.83
1890 2039 4.053983 CAGAGGATATGACATGTGGTTCG 58.946 47.826 1.15 0.00 0.00 3.95
1896 2045 3.896648 ATGACATGTGGTTCGTCAAAC 57.103 42.857 1.15 0.00 42.53 2.93
1931 2082 3.066380 CGACATGGATTTGAGTGTGACA 58.934 45.455 0.00 0.00 0.00 3.58
1973 2133 9.886132 AAAATTACGTTGATCTTACTATGTCCT 57.114 29.630 0.00 0.00 0.00 3.85
2025 2185 7.378181 TCATTTCCAGACCTTTTGCTTTTATC 58.622 34.615 0.00 0.00 0.00 1.75
2058 2218 6.573664 TTGTTCCATAAACTCTGGATTGTG 57.426 37.500 0.00 0.00 42.26 3.33
2078 2238 0.887933 CTGTGGCCGGCTGTAAAAAT 59.112 50.000 28.56 0.00 0.00 1.82
2201 2361 3.127721 GCTTCCATTAGTGACTGCCTTTC 59.872 47.826 0.00 0.00 0.00 2.62
2250 2410 4.522789 GGGAGCTTTGTTTTCACTTCCATA 59.477 41.667 0.00 0.00 0.00 2.74
2251 2411 5.335976 GGGAGCTTTGTTTTCACTTCCATAG 60.336 44.000 0.00 0.00 0.00 2.23
2279 2439 8.367156 TGAAAAATCCTTACTCCATTTGAAAGG 58.633 33.333 0.00 0.00 38.44 3.11
2287 2447 8.971073 CCTTACTCCATTTGAAAGGTTATCATT 58.029 33.333 0.00 0.00 33.50 2.57
2327 2487 7.594015 CCTTCATTTGCAGATCATAAAGTATGC 59.406 37.037 0.00 0.00 36.14 3.14
2332 2492 5.059161 TGCAGATCATAAAGTATGCTCCAC 58.941 41.667 0.00 0.00 33.07 4.02
2361 2521 7.167635 GCTGATCTTTATGTTCATTGATTGCAG 59.832 37.037 0.00 0.00 0.00 4.41
2408 2568 9.331282 GGAGTATGTATGAAGTATTTTTCTGCT 57.669 33.333 0.00 0.00 0.00 4.24
2414 2574 3.758554 TGAAGTATTTTTCTGCTCCTGGC 59.241 43.478 0.00 0.00 42.22 4.85
2421 2581 0.773644 TTCTGCTCCTGGCCTTTCTT 59.226 50.000 3.32 0.00 40.92 2.52
2425 2585 1.181098 GCTCCTGGCCTTTCTTTGCA 61.181 55.000 3.32 0.00 34.27 4.08
2426 2586 0.886563 CTCCTGGCCTTTCTTTGCAG 59.113 55.000 3.32 0.00 0.00 4.41
2442 2618 6.172630 TCTTTGCAGAGCAGTGATAATAACA 58.827 36.000 0.00 0.00 40.61 2.41
2451 2627 6.162079 AGCAGTGATAATAACATCAGATCCG 58.838 40.000 0.00 0.00 35.63 4.18
2457 2633 9.347934 GTGATAATAACATCAGATCCGAGTTAG 57.652 37.037 0.00 0.00 35.63 2.34
2458 2634 8.029522 TGATAATAACATCAGATCCGAGTTAGC 58.970 37.037 0.00 0.00 31.34 3.09
2474 2650 5.921408 CGAGTTAGCTCTGTCTGTTTAGTTT 59.079 40.000 4.99 0.00 39.53 2.66
2475 2651 6.088350 CGAGTTAGCTCTGTCTGTTTAGTTTC 59.912 42.308 4.99 0.00 39.53 2.78
2478 2654 7.439655 AGTTAGCTCTGTCTGTTTAGTTTCAAG 59.560 37.037 0.00 0.00 0.00 3.02
2479 2655 5.918608 AGCTCTGTCTGTTTAGTTTCAAGA 58.081 37.500 0.00 0.00 0.00 3.02
2480 2656 6.529220 AGCTCTGTCTGTTTAGTTTCAAGAT 58.471 36.000 0.00 0.00 0.00 2.40
2481 2657 7.671302 AGCTCTGTCTGTTTAGTTTCAAGATA 58.329 34.615 0.00 0.00 0.00 1.98
2483 2659 8.224437 GCTCTGTCTGTTTAGTTTCAAGATAAC 58.776 37.037 0.00 0.00 0.00 1.89
2484 2660 9.482627 CTCTGTCTGTTTAGTTTCAAGATAACT 57.517 33.333 0.00 0.00 39.13 2.24
2485 2661 9.477484 TCTGTCTGTTTAGTTTCAAGATAACTC 57.523 33.333 0.00 0.00 37.12 3.01
2486 2662 8.603242 TGTCTGTTTAGTTTCAAGATAACTCC 57.397 34.615 0.00 0.00 37.12 3.85
2487 2663 8.208224 TGTCTGTTTAGTTTCAAGATAACTCCA 58.792 33.333 0.00 0.00 37.12 3.86
2519 2695 9.893305 ATTTTTCACTTACTTTAATTCTGGACG 57.107 29.630 0.00 0.00 0.00 4.79
2522 2698 9.545105 TTTCACTTACTTTAATTCTGGACGTTA 57.455 29.630 0.00 0.00 0.00 3.18
2535 2711 3.538634 GGACGTTATCCCTTGCTTACT 57.461 47.619 0.00 0.00 42.46 2.24
2543 2719 6.514376 CGTTATCCCTTGCTTACTTGTTGTTT 60.514 38.462 0.00 0.00 0.00 2.83
2544 2720 5.869649 ATCCCTTGCTTACTTGTTGTTTT 57.130 34.783 0.00 0.00 0.00 2.43
2545 2721 5.004922 TCCCTTGCTTACTTGTTGTTTTG 57.995 39.130 0.00 0.00 0.00 2.44
2546 2722 4.119136 CCCTTGCTTACTTGTTGTTTTGG 58.881 43.478 0.00 0.00 0.00 3.28
2547 2723 4.382577 CCCTTGCTTACTTGTTGTTTTGGT 60.383 41.667 0.00 0.00 0.00 3.67
2548 2724 5.163499 CCCTTGCTTACTTGTTGTTTTGGTA 60.163 40.000 0.00 0.00 0.00 3.25
2549 2725 6.334202 CCTTGCTTACTTGTTGTTTTGGTAA 58.666 36.000 0.00 0.00 0.00 2.85
2550 2726 6.983890 CCTTGCTTACTTGTTGTTTTGGTAAT 59.016 34.615 0.00 0.00 0.00 1.89
2551 2727 7.494298 CCTTGCTTACTTGTTGTTTTGGTAATT 59.506 33.333 0.00 0.00 0.00 1.40
2552 2728 8.779354 TTGCTTACTTGTTGTTTTGGTAATTT 57.221 26.923 0.00 0.00 0.00 1.82
2553 2729 8.190888 TGCTTACTTGTTGTTTTGGTAATTTG 57.809 30.769 0.00 0.00 0.00 2.32
2554 2730 7.278868 TGCTTACTTGTTGTTTTGGTAATTTGG 59.721 33.333 0.00 0.00 0.00 3.28
2555 2731 7.279090 GCTTACTTGTTGTTTTGGTAATTTGGT 59.721 33.333 0.00 0.00 0.00 3.67
2556 2732 9.804758 CTTACTTGTTGTTTTGGTAATTTGGTA 57.195 29.630 0.00 0.00 0.00 3.25
2559 2735 9.503399 ACTTGTTGTTTTGGTAATTTGGTAAAA 57.497 25.926 0.00 0.00 0.00 1.52
2562 2738 9.503399 TGTTGTTTTGGTAATTTGGTAAAAAGT 57.497 25.926 0.00 0.00 0.00 2.66
2565 2741 8.947115 TGTTTTGGTAATTTGGTAAAAAGTTGG 58.053 29.630 0.00 0.00 0.00 3.77
2566 2742 9.163899 GTTTTGGTAATTTGGTAAAAAGTTGGA 57.836 29.630 0.00 0.00 0.00 3.53
2567 2743 9.734984 TTTTGGTAATTTGGTAAAAAGTTGGAA 57.265 25.926 0.00 0.00 0.00 3.53
2568 2744 9.734984 TTTGGTAATTTGGTAAAAAGTTGGAAA 57.265 25.926 0.00 0.00 0.00 3.13
2587 2763 9.109393 GTTGGAAACTAGCAGAATTATACATGA 57.891 33.333 0.00 0.00 45.32 3.07
2588 2764 8.893219 TGGAAACTAGCAGAATTATACATGAG 57.107 34.615 0.00 0.00 0.00 2.90
2589 2765 7.442364 TGGAAACTAGCAGAATTATACATGAGC 59.558 37.037 0.00 0.00 0.00 4.26
2590 2766 7.659390 GGAAACTAGCAGAATTATACATGAGCT 59.341 37.037 0.00 0.00 35.06 4.09
2591 2767 9.698309 GAAACTAGCAGAATTATACATGAGCTA 57.302 33.333 0.00 0.00 32.70 3.32
2593 2769 7.754069 CTAGCAGAATTATACATGAGCTAGC 57.246 40.000 6.62 6.62 42.32 3.42
2594 2770 6.106648 AGCAGAATTATACATGAGCTAGCA 57.893 37.500 18.83 0.00 0.00 3.49
2595 2771 6.709281 AGCAGAATTATACATGAGCTAGCAT 58.291 36.000 18.83 2.63 0.00 3.79
2596 2772 6.817641 AGCAGAATTATACATGAGCTAGCATC 59.182 38.462 18.83 11.93 0.00 3.91
2597 2773 6.592994 GCAGAATTATACATGAGCTAGCATCA 59.407 38.462 18.83 17.11 0.00 3.07
2598 2774 7.201539 GCAGAATTATACATGAGCTAGCATCAG 60.202 40.741 18.83 12.72 0.00 2.90
2599 2775 8.033626 CAGAATTATACATGAGCTAGCATCAGA 58.966 37.037 18.83 7.81 0.00 3.27
2600 2776 8.034215 AGAATTATACATGAGCTAGCATCAGAC 58.966 37.037 18.83 1.62 0.00 3.51
2601 2777 2.906691 ACATGAGCTAGCATCAGACC 57.093 50.000 18.83 0.00 0.00 3.85
2602 2778 2.113807 ACATGAGCTAGCATCAGACCA 58.886 47.619 18.83 3.30 0.00 4.02
2603 2779 2.502947 ACATGAGCTAGCATCAGACCAA 59.497 45.455 18.83 0.00 0.00 3.67
2604 2780 3.054875 ACATGAGCTAGCATCAGACCAAA 60.055 43.478 18.83 0.00 0.00 3.28
2605 2781 3.701205 TGAGCTAGCATCAGACCAAAA 57.299 42.857 18.83 0.00 0.00 2.44
2606 2782 4.226427 TGAGCTAGCATCAGACCAAAAT 57.774 40.909 18.83 0.00 0.00 1.82
2607 2783 3.943381 TGAGCTAGCATCAGACCAAAATG 59.057 43.478 18.83 0.00 0.00 2.32
2608 2784 4.194640 GAGCTAGCATCAGACCAAAATGA 58.805 43.478 18.83 0.00 0.00 2.57
2609 2785 4.789807 AGCTAGCATCAGACCAAAATGAT 58.210 39.130 18.83 0.00 36.60 2.45
2610 2786 5.198965 AGCTAGCATCAGACCAAAATGATT 58.801 37.500 18.83 0.00 33.91 2.57
2611 2787 5.067413 AGCTAGCATCAGACCAAAATGATTG 59.933 40.000 18.83 0.00 33.91 2.67
2612 2788 4.730949 AGCATCAGACCAAAATGATTGG 57.269 40.909 5.69 5.69 44.91 3.16
2613 2789 3.449737 AGCATCAGACCAAAATGATTGGG 59.550 43.478 11.58 0.00 43.71 4.12
2614 2790 3.448301 GCATCAGACCAAAATGATTGGGA 59.552 43.478 11.58 0.52 43.71 4.37
2615 2791 4.081531 GCATCAGACCAAAATGATTGGGAA 60.082 41.667 11.58 0.00 43.71 3.97
2616 2792 5.395990 GCATCAGACCAAAATGATTGGGAAT 60.396 40.000 11.58 0.00 43.71 3.01
2617 2793 6.646267 CATCAGACCAAAATGATTGGGAATT 58.354 36.000 11.58 0.00 43.71 2.17
2618 2794 6.684897 TCAGACCAAAATGATTGGGAATTT 57.315 33.333 11.58 0.00 43.71 1.82
2619 2795 6.700352 TCAGACCAAAATGATTGGGAATTTC 58.300 36.000 11.58 0.39 43.71 2.17
2620 2796 6.269538 TCAGACCAAAATGATTGGGAATTTCA 59.730 34.615 11.58 0.00 43.71 2.69
2621 2797 6.935771 CAGACCAAAATGATTGGGAATTTCAA 59.064 34.615 11.58 0.00 43.71 2.69
2622 2798 6.936335 AGACCAAAATGATTGGGAATTTCAAC 59.064 34.615 11.58 0.00 43.71 3.18
2623 2799 6.599445 ACCAAAATGATTGGGAATTTCAACA 58.401 32.000 11.58 0.00 43.71 3.33
2624 2800 7.232910 ACCAAAATGATTGGGAATTTCAACAT 58.767 30.769 11.58 0.00 43.71 2.71
2625 2801 7.175293 ACCAAAATGATTGGGAATTTCAACATG 59.825 33.333 11.58 0.00 43.71 3.21
2626 2802 7.175293 CCAAAATGATTGGGAATTTCAACATGT 59.825 33.333 0.00 0.00 35.96 3.21
2627 2803 7.675962 AAATGATTGGGAATTTCAACATGTG 57.324 32.000 0.00 0.00 0.00 3.21
2628 2804 4.567971 TGATTGGGAATTTCAACATGTGC 58.432 39.130 0.00 0.00 0.00 4.57
2629 2805 4.283978 TGATTGGGAATTTCAACATGTGCT 59.716 37.500 0.00 0.00 0.00 4.40
2630 2806 3.940209 TGGGAATTTCAACATGTGCTC 57.060 42.857 0.00 0.00 0.00 4.26
2631 2807 2.562298 TGGGAATTTCAACATGTGCTCC 59.438 45.455 0.00 0.00 0.00 4.70
2632 2808 2.827921 GGGAATTTCAACATGTGCTCCT 59.172 45.455 0.00 0.00 0.00 3.69
2633 2809 3.119352 GGGAATTTCAACATGTGCTCCTC 60.119 47.826 0.00 0.00 0.00 3.71
2634 2810 3.760684 GGAATTTCAACATGTGCTCCTCT 59.239 43.478 0.00 0.00 0.00 3.69
2635 2811 4.219288 GGAATTTCAACATGTGCTCCTCTT 59.781 41.667 0.00 0.00 0.00 2.85
2636 2812 4.778534 ATTTCAACATGTGCTCCTCTTG 57.221 40.909 0.00 0.00 0.00 3.02
2637 2813 2.936919 TCAACATGTGCTCCTCTTGT 57.063 45.000 0.00 0.00 0.00 3.16
2638 2814 3.213206 TCAACATGTGCTCCTCTTGTT 57.787 42.857 0.00 0.00 34.89 2.83
2639 2815 3.554934 TCAACATGTGCTCCTCTTGTTT 58.445 40.909 0.00 0.00 33.20 2.83
2640 2816 3.565482 TCAACATGTGCTCCTCTTGTTTC 59.435 43.478 0.00 0.00 33.20 2.78
2641 2817 3.498774 ACATGTGCTCCTCTTGTTTCT 57.501 42.857 0.00 0.00 0.00 2.52
2642 2818 3.406764 ACATGTGCTCCTCTTGTTTCTC 58.593 45.455 0.00 0.00 0.00 2.87
2643 2819 2.550830 TGTGCTCCTCTTGTTTCTCC 57.449 50.000 0.00 0.00 0.00 3.71
2644 2820 2.050144 TGTGCTCCTCTTGTTTCTCCT 58.950 47.619 0.00 0.00 0.00 3.69
2645 2821 3.239449 TGTGCTCCTCTTGTTTCTCCTA 58.761 45.455 0.00 0.00 0.00 2.94
2646 2822 3.259374 TGTGCTCCTCTTGTTTCTCCTAG 59.741 47.826 0.00 0.00 0.00 3.02
2647 2823 2.234908 TGCTCCTCTTGTTTCTCCTAGC 59.765 50.000 0.00 0.00 0.00 3.42
2648 2824 2.234908 GCTCCTCTTGTTTCTCCTAGCA 59.765 50.000 0.00 0.00 0.00 3.49
2649 2825 3.855858 CTCCTCTTGTTTCTCCTAGCAC 58.144 50.000 0.00 0.00 0.00 4.40
2650 2826 3.511477 TCCTCTTGTTTCTCCTAGCACT 58.489 45.455 0.00 0.00 0.00 4.40
2651 2827 4.673968 TCCTCTTGTTTCTCCTAGCACTA 58.326 43.478 0.00 0.00 0.00 2.74
2652 2828 4.707448 TCCTCTTGTTTCTCCTAGCACTAG 59.293 45.833 0.00 0.00 0.00 2.57
2653 2829 4.429108 CTCTTGTTTCTCCTAGCACTAGC 58.571 47.826 0.00 0.00 42.56 3.42
2654 2830 3.832490 TCTTGTTTCTCCTAGCACTAGCA 59.168 43.478 0.00 0.00 45.49 3.49
2655 2831 3.876274 TGTTTCTCCTAGCACTAGCAG 57.124 47.619 0.00 0.00 45.49 4.24
2656 2832 2.497675 TGTTTCTCCTAGCACTAGCAGG 59.502 50.000 0.00 0.00 45.49 4.85
2657 2833 2.761208 GTTTCTCCTAGCACTAGCAGGA 59.239 50.000 0.00 0.00 45.49 3.86
2658 2834 2.060050 TCTCCTAGCACTAGCAGGAC 57.940 55.000 0.00 0.00 45.49 3.85
2659 2835 1.285078 TCTCCTAGCACTAGCAGGACA 59.715 52.381 0.00 0.00 45.49 4.02
2660 2836 2.091610 TCTCCTAGCACTAGCAGGACAT 60.092 50.000 0.00 0.00 45.49 3.06
2661 2837 3.138468 TCTCCTAGCACTAGCAGGACATA 59.862 47.826 0.00 0.00 45.49 2.29
2662 2838 3.891977 CTCCTAGCACTAGCAGGACATAA 59.108 47.826 0.00 0.00 45.49 1.90
2663 2839 4.286707 TCCTAGCACTAGCAGGACATAAA 58.713 43.478 0.00 0.00 45.49 1.40
2664 2840 4.901849 TCCTAGCACTAGCAGGACATAAAT 59.098 41.667 0.00 0.00 45.49 1.40
2665 2841 5.366768 TCCTAGCACTAGCAGGACATAAATT 59.633 40.000 0.00 0.00 45.49 1.82
2666 2842 5.468072 CCTAGCACTAGCAGGACATAAATTG 59.532 44.000 0.00 0.00 45.49 2.32
2667 2843 4.848357 AGCACTAGCAGGACATAAATTGT 58.152 39.130 0.00 0.00 45.49 2.71
2668 2844 5.989477 AGCACTAGCAGGACATAAATTGTA 58.011 37.500 0.00 0.00 45.49 2.41
2669 2845 5.817816 AGCACTAGCAGGACATAAATTGTAC 59.182 40.000 0.00 0.00 45.49 2.90
2670 2846 5.584649 GCACTAGCAGGACATAAATTGTACA 59.415 40.000 0.00 0.00 42.18 2.90
2671 2847 6.260936 GCACTAGCAGGACATAAATTGTACAT 59.739 38.462 0.00 0.00 42.18 2.29
2672 2848 7.201732 GCACTAGCAGGACATAAATTGTACATT 60.202 37.037 0.00 0.00 42.18 2.71
2673 2849 8.124823 CACTAGCAGGACATAAATTGTACATTG 58.875 37.037 0.00 0.00 42.18 2.82
2674 2850 8.046708 ACTAGCAGGACATAAATTGTACATTGA 58.953 33.333 0.00 0.00 42.18 2.57
2675 2851 7.325660 AGCAGGACATAAATTGTACATTGAG 57.674 36.000 0.00 0.00 42.18 3.02
2676 2852 6.319658 AGCAGGACATAAATTGTACATTGAGG 59.680 38.462 0.00 0.00 42.18 3.86
2677 2853 6.460123 GCAGGACATAAATTGTACATTGAGGG 60.460 42.308 0.00 0.00 42.18 4.30
2678 2854 6.828273 CAGGACATAAATTGTACATTGAGGGA 59.172 38.462 0.00 0.00 42.18 4.20
2679 2855 7.503566 CAGGACATAAATTGTACATTGAGGGAT 59.496 37.037 0.00 0.00 42.18 3.85
2680 2856 8.061304 AGGACATAAATTGTACATTGAGGGATT 58.939 33.333 0.00 0.00 42.18 3.01
2681 2857 8.137437 GGACATAAATTGTACATTGAGGGATTG 58.863 37.037 0.00 0.00 39.20 2.67
2682 2858 7.491682 ACATAAATTGTACATTGAGGGATTGC 58.508 34.615 0.00 0.00 36.57 3.56
2683 2859 5.999205 AAATTGTACATTGAGGGATTGCA 57.001 34.783 0.00 0.00 0.00 4.08
2684 2860 5.999205 AATTGTACATTGAGGGATTGCAA 57.001 34.783 0.00 0.00 0.00 4.08
2685 2861 5.587388 ATTGTACATTGAGGGATTGCAAG 57.413 39.130 4.94 0.00 0.00 4.01
2686 2862 3.355378 TGTACATTGAGGGATTGCAAGG 58.645 45.455 4.94 0.00 32.58 3.61
2687 2863 1.856629 ACATTGAGGGATTGCAAGGG 58.143 50.000 4.94 0.00 30.75 3.95
2688 2864 1.117150 CATTGAGGGATTGCAAGGGG 58.883 55.000 4.94 0.00 0.00 4.79
2689 2865 0.688749 ATTGAGGGATTGCAAGGGGC 60.689 55.000 4.94 0.00 45.13 5.80
2698 2874 4.756630 GCAAGGGGCAAACACAAG 57.243 55.556 0.00 0.00 43.97 3.16
2699 2875 1.069596 GCAAGGGGCAAACACAAGG 59.930 57.895 0.00 0.00 43.97 3.61
2700 2876 1.398958 GCAAGGGGCAAACACAAGGA 61.399 55.000 0.00 0.00 43.97 3.36
2701 2877 1.118838 CAAGGGGCAAACACAAGGAA 58.881 50.000 0.00 0.00 0.00 3.36
2702 2878 1.119684 AAGGGGCAAACACAAGGAAC 58.880 50.000 0.00 0.00 0.00 3.62
2703 2879 0.032615 AGGGGCAAACACAAGGAACA 60.033 50.000 0.00 0.00 0.00 3.18
2704 2880 1.047801 GGGGCAAACACAAGGAACAT 58.952 50.000 0.00 0.00 0.00 2.71
2705 2881 1.000843 GGGGCAAACACAAGGAACATC 59.999 52.381 0.00 0.00 0.00 3.06
2706 2882 1.963515 GGGCAAACACAAGGAACATCT 59.036 47.619 0.00 0.00 0.00 2.90
2707 2883 2.288395 GGGCAAACACAAGGAACATCTG 60.288 50.000 0.00 0.00 0.00 2.90
2708 2884 2.362077 GGCAAACACAAGGAACATCTGT 59.638 45.455 0.00 0.00 0.00 3.41
2709 2885 3.550842 GGCAAACACAAGGAACATCTGTC 60.551 47.826 0.00 0.00 0.00 3.51
2710 2886 3.066621 GCAAACACAAGGAACATCTGTCA 59.933 43.478 0.00 0.00 0.00 3.58
2711 2887 4.261741 GCAAACACAAGGAACATCTGTCAT 60.262 41.667 0.00 0.00 0.00 3.06
2712 2888 5.455392 CAAACACAAGGAACATCTGTCATC 58.545 41.667 0.00 0.00 0.00 2.92
2713 2889 4.630644 ACACAAGGAACATCTGTCATCT 57.369 40.909 0.00 0.00 0.00 2.90
2714 2890 4.321718 ACACAAGGAACATCTGTCATCTG 58.678 43.478 0.00 0.00 0.00 2.90
2715 2891 4.202398 ACACAAGGAACATCTGTCATCTGT 60.202 41.667 0.00 0.00 0.00 3.41
2716 2892 4.153655 CACAAGGAACATCTGTCATCTGTG 59.846 45.833 0.00 0.00 0.00 3.66
2717 2893 2.983229 AGGAACATCTGTCATCTGTGC 58.017 47.619 0.00 0.00 0.00 4.57
2718 2894 2.570752 AGGAACATCTGTCATCTGTGCT 59.429 45.455 0.00 0.00 0.00 4.40
2719 2895 3.008813 AGGAACATCTGTCATCTGTGCTT 59.991 43.478 0.00 0.00 0.00 3.91
2720 2896 3.755378 GGAACATCTGTCATCTGTGCTTT 59.245 43.478 0.00 0.00 0.00 3.51
2721 2897 4.142730 GGAACATCTGTCATCTGTGCTTTC 60.143 45.833 0.00 0.00 0.00 2.62
2722 2898 4.011966 ACATCTGTCATCTGTGCTTTCA 57.988 40.909 0.00 0.00 0.00 2.69
2723 2899 4.392047 ACATCTGTCATCTGTGCTTTCAA 58.608 39.130 0.00 0.00 0.00 2.69
2724 2900 5.008331 ACATCTGTCATCTGTGCTTTCAAT 58.992 37.500 0.00 0.00 0.00 2.57
2725 2901 5.123502 ACATCTGTCATCTGTGCTTTCAATC 59.876 40.000 0.00 0.00 0.00 2.67
2726 2902 4.644498 TCTGTCATCTGTGCTTTCAATCA 58.356 39.130 0.00 0.00 0.00 2.57
2727 2903 5.250982 TCTGTCATCTGTGCTTTCAATCAT 58.749 37.500 0.00 0.00 0.00 2.45
2728 2904 5.708697 TCTGTCATCTGTGCTTTCAATCATT 59.291 36.000 0.00 0.00 0.00 2.57
2729 2905 5.705902 TGTCATCTGTGCTTTCAATCATTG 58.294 37.500 0.00 0.00 0.00 2.82
2730 2906 5.242171 TGTCATCTGTGCTTTCAATCATTGT 59.758 36.000 0.00 0.00 0.00 2.71
2731 2907 5.571741 GTCATCTGTGCTTTCAATCATTGTG 59.428 40.000 0.00 0.00 0.00 3.33
2732 2908 5.474189 TCATCTGTGCTTTCAATCATTGTGA 59.526 36.000 0.00 0.00 0.00 3.58
2733 2909 5.771153 TCTGTGCTTTCAATCATTGTGAA 57.229 34.783 0.00 0.00 33.21 3.18
2734 2910 5.765176 TCTGTGCTTTCAATCATTGTGAAG 58.235 37.500 0.00 4.84 36.41 3.02
2735 2911 5.532032 TCTGTGCTTTCAATCATTGTGAAGA 59.468 36.000 15.81 2.66 36.41 2.87
2736 2912 6.208007 TCTGTGCTTTCAATCATTGTGAAGAT 59.792 34.615 15.81 0.00 36.41 2.40
2737 2913 6.153756 TGTGCTTTCAATCATTGTGAAGATG 58.846 36.000 15.81 0.00 36.41 2.90
2738 2914 5.575606 GTGCTTTCAATCATTGTGAAGATGG 59.424 40.000 15.81 0.00 36.41 3.51
2739 2915 4.565564 GCTTTCAATCATTGTGAAGATGGC 59.434 41.667 15.81 3.08 36.41 4.40
2740 2916 5.716094 CTTTCAATCATTGTGAAGATGGCA 58.284 37.500 9.36 0.00 36.41 4.92
2741 2917 5.725325 TTCAATCATTGTGAAGATGGCAA 57.275 34.783 0.00 0.00 31.45 4.52
2742 2918 5.319140 TCAATCATTGTGAAGATGGCAAG 57.681 39.130 0.00 0.00 0.00 4.01
2743 2919 5.011586 TCAATCATTGTGAAGATGGCAAGA 58.988 37.500 0.00 0.00 0.00 3.02
2744 2920 5.124936 TCAATCATTGTGAAGATGGCAAGAG 59.875 40.000 0.00 0.00 0.00 2.85
2745 2921 4.290711 TCATTGTGAAGATGGCAAGAGA 57.709 40.909 0.00 0.00 0.00 3.10
2746 2922 4.005650 TCATTGTGAAGATGGCAAGAGAC 58.994 43.478 0.00 0.00 0.00 3.36
2747 2923 3.490439 TTGTGAAGATGGCAAGAGACA 57.510 42.857 0.00 0.00 37.03 3.41
2748 2924 3.490439 TGTGAAGATGGCAAGAGACAA 57.510 42.857 0.00 0.00 35.50 3.18
2749 2925 3.819368 TGTGAAGATGGCAAGAGACAAA 58.181 40.909 0.00 0.00 35.50 2.83
2750 2926 4.206375 TGTGAAGATGGCAAGAGACAAAA 58.794 39.130 0.00 0.00 35.50 2.44
2751 2927 4.036734 TGTGAAGATGGCAAGAGACAAAAC 59.963 41.667 0.00 0.00 35.50 2.43
2752 2928 4.036734 GTGAAGATGGCAAGAGACAAAACA 59.963 41.667 0.00 0.00 35.50 2.83
2753 2929 4.828939 TGAAGATGGCAAGAGACAAAACAT 59.171 37.500 0.00 0.00 35.50 2.71
2754 2930 4.778534 AGATGGCAAGAGACAAAACATG 57.221 40.909 0.00 0.00 35.50 3.21
2756 2932 5.316167 AGATGGCAAGAGACAAAACATGTA 58.684 37.500 0.00 0.00 44.12 2.29
2757 2933 4.829064 TGGCAAGAGACAAAACATGTAC 57.171 40.909 0.00 0.00 44.12 2.90
2758 2934 4.203226 TGGCAAGAGACAAAACATGTACA 58.797 39.130 0.00 0.00 44.12 2.90
2759 2935 4.826733 TGGCAAGAGACAAAACATGTACAT 59.173 37.500 1.41 1.41 44.12 2.29
2760 2936 5.156355 GGCAAGAGACAAAACATGTACATG 58.844 41.667 29.97 29.97 44.12 3.21
2761 2937 8.873490 ATGGCAAGAGACAAAACATGTACATGT 61.873 37.037 31.29 31.29 45.13 3.21
2774 2950 6.106877 CATGTACATGTACTGCTGTTAACC 57.893 41.667 30.69 6.22 37.00 2.85
2775 2951 5.477607 TGTACATGTACTGCTGTTAACCT 57.522 39.130 30.69 0.00 37.00 3.50
2776 2952 6.593268 TGTACATGTACTGCTGTTAACCTA 57.407 37.500 30.69 8.35 37.00 3.08
2777 2953 6.627243 TGTACATGTACTGCTGTTAACCTAG 58.373 40.000 30.69 1.50 37.00 3.02
2778 2954 4.504858 ACATGTACTGCTGTTAACCTAGC 58.495 43.478 10.26 10.26 40.29 3.42
2779 2955 4.020573 ACATGTACTGCTGTTAACCTAGCA 60.021 41.667 17.00 17.00 46.79 3.49
2784 2960 3.485463 TGCTGTTAACCTAGCAACTGT 57.515 42.857 15.99 0.00 46.06 3.55
2785 2961 3.399330 TGCTGTTAACCTAGCAACTGTC 58.601 45.455 15.99 0.00 46.06 3.51
2786 2962 3.071023 TGCTGTTAACCTAGCAACTGTCT 59.929 43.478 15.99 0.00 46.06 3.41
2787 2963 3.680458 GCTGTTAACCTAGCAACTGTCTC 59.320 47.826 11.89 0.00 39.67 3.36
2788 2964 4.799586 GCTGTTAACCTAGCAACTGTCTCA 60.800 45.833 11.89 0.00 39.67 3.27
2789 2965 5.482908 CTGTTAACCTAGCAACTGTCTCAT 58.517 41.667 2.48 0.00 0.00 2.90
2790 2966 5.237815 TGTTAACCTAGCAACTGTCTCATG 58.762 41.667 2.48 0.00 0.00 3.07
2791 2967 3.340814 AACCTAGCAACTGTCTCATGG 57.659 47.619 0.00 0.00 0.00 3.66
2792 2968 2.260822 ACCTAGCAACTGTCTCATGGT 58.739 47.619 0.00 0.00 0.00 3.55
2793 2969 2.234908 ACCTAGCAACTGTCTCATGGTC 59.765 50.000 0.00 0.00 0.00 4.02
2794 2970 2.499289 CCTAGCAACTGTCTCATGGTCT 59.501 50.000 0.00 0.00 0.00 3.85
2795 2971 3.055530 CCTAGCAACTGTCTCATGGTCTT 60.056 47.826 0.00 0.00 0.00 3.01
2796 2972 3.498774 AGCAACTGTCTCATGGTCTTT 57.501 42.857 0.00 0.00 0.00 2.52
2797 2973 3.406764 AGCAACTGTCTCATGGTCTTTC 58.593 45.455 0.00 0.00 0.00 2.62
2798 2974 2.485814 GCAACTGTCTCATGGTCTTTCC 59.514 50.000 0.00 0.00 0.00 3.13
2799 2975 3.808618 GCAACTGTCTCATGGTCTTTCCT 60.809 47.826 0.00 0.00 37.07 3.36
2800 2976 4.392940 CAACTGTCTCATGGTCTTTCCTT 58.607 43.478 0.00 0.00 37.07 3.36
2801 2977 5.551233 CAACTGTCTCATGGTCTTTCCTTA 58.449 41.667 0.00 0.00 37.07 2.69
2802 2978 5.153950 ACTGTCTCATGGTCTTTCCTTAC 57.846 43.478 0.00 0.00 37.07 2.34
2803 2979 4.841246 ACTGTCTCATGGTCTTTCCTTACT 59.159 41.667 0.00 0.00 37.07 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.449934 TTTTTCTTTTCAAATCTCTGCGAAC 57.550 32.000 0.00 0.00 0.00 3.95
178 179 3.227948 CGTACGTTTTGGGTTACAATGC 58.772 45.455 7.22 0.00 39.21 3.56
182 183 1.202627 AGGCGTACGTTTTGGGTTACA 60.203 47.619 17.90 0.00 0.00 2.41
189 190 0.665369 ACTCGGAGGCGTACGTTTTG 60.665 55.000 17.90 3.85 0.00 2.44
201 202 3.834610 ACTCGTGTTAATCAACTCGGAG 58.165 45.455 2.83 2.83 46.41 4.63
215 216 2.396590 AGGTTCACAACAACTCGTGT 57.603 45.000 0.00 0.00 44.64 4.49
243 244 1.794701 CACATATGGGATTCGAGCACG 59.205 52.381 7.80 0.00 41.26 5.34
247 248 4.944048 TGTGTACACATATGGGATTCGAG 58.056 43.478 24.62 0.00 36.21 4.04
336 337 4.020617 CAGCTGGTCGCCTTCCCA 62.021 66.667 5.57 0.00 40.39 4.37
346 468 0.748005 ACTCGTTTGCAACAGCTGGT 60.748 50.000 19.93 9.19 0.00 4.00
429 561 6.446781 TCGTCTTTTGAGAGGAACGTATAT 57.553 37.500 0.00 0.00 30.92 0.86
460 592 4.727677 ACCCCCTTCACAAAACGTATAAA 58.272 39.130 0.00 0.00 0.00 1.40
501 634 8.369424 TCATGTCATGAACCTTGAATGATTTTT 58.631 29.630 13.25 0.00 36.11 1.94
565 698 3.258123 GGCCACCAACAACAGTAATGATT 59.742 43.478 0.00 0.00 0.00 2.57
566 699 2.825532 GGCCACCAACAACAGTAATGAT 59.174 45.455 0.00 0.00 0.00 2.45
595 728 2.438254 TTGCTAGGTGCCGGCATG 60.438 61.111 35.23 22.75 42.00 4.06
601 734 0.881796 GGACTTTGTTGCTAGGTGCC 59.118 55.000 0.00 0.00 42.00 5.01
658 791 3.502211 AGTTCATGCCTTTCGTCGAATTT 59.498 39.130 8.78 0.00 0.00 1.82
667 800 4.276926 ACTTGAGACAAGTTCATGCCTTTC 59.723 41.667 10.73 0.00 0.00 2.62
820 956 6.457528 GGCTCAAATACTTCAGTACAAGCATC 60.458 42.308 0.00 0.00 32.72 3.91
847 983 0.756294 TGGCAACCTCTGTTCTTCGA 59.244 50.000 0.00 0.00 30.42 3.71
874 1010 3.764434 ACTGAAGCTTCTCGATCTTGGTA 59.236 43.478 26.09 1.46 0.00 3.25
875 1011 2.564947 ACTGAAGCTTCTCGATCTTGGT 59.435 45.455 26.09 8.76 0.00 3.67
916 1052 1.270839 ACACCAACATTCGTCTCCCTG 60.271 52.381 0.00 0.00 0.00 4.45
925 1061 1.290009 GGGCAGCACACCAACATTC 59.710 57.895 0.00 0.00 0.00 2.67
1001 1137 3.591979 GCAACTTCAATGCCTTGCA 57.408 47.368 0.00 0.00 44.86 4.08
1036 1172 2.498167 ACGAGTGCTTTCATTTGCTCT 58.502 42.857 0.00 0.00 36.01 4.09
1091 1228 1.414181 GATGGAGGCTTGCTACAGCTA 59.586 52.381 2.44 0.00 42.66 3.32
1125 1262 5.532557 AGCTTGTAAATGGCAAGTTTTCTC 58.467 37.500 0.00 0.00 43.65 2.87
1152 1289 3.334280 AGGTCTGACTACCCTTCTGTACT 59.666 47.826 7.85 0.00 40.71 2.73
1153 1290 3.695556 GAGGTCTGACTACCCTTCTGTAC 59.304 52.174 7.85 0.00 40.71 2.90
1156 1293 2.104170 GGAGGTCTGACTACCCTTCTG 58.896 57.143 7.85 0.00 40.71 3.02
1201 1338 2.758089 GGCCGCAACTGCAGAGATG 61.758 63.158 23.35 16.63 42.21 2.90
1230 1367 5.359756 TCAGAACCCTCATCATTGATAACG 58.640 41.667 0.00 0.00 0.00 3.18
1232 1369 8.827832 AAAATCAGAACCCTCATCATTGATAA 57.172 30.769 0.00 0.00 0.00 1.75
1308 1445 1.597854 CAACTTGCCCGACAGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
1339 1476 6.881602 AGGTTGTTAAGATTCTTGATCCACTC 59.118 38.462 9.22 0.00 35.21 3.51
1356 1493 4.842380 AGGGTTAGCTTGTAGAGGTTGTTA 59.158 41.667 0.00 0.00 37.30 2.41
1359 1496 3.983044 AGGGTTAGCTTGTAGAGGTTG 57.017 47.619 0.00 0.00 37.30 3.77
1430 1567 6.127168 TGAGAAGGTGAGACAGAACAGTTTAA 60.127 38.462 0.00 0.00 0.00 1.52
1485 1622 5.441718 TTTCCTGAAGCATGTCCTCTATT 57.558 39.130 0.00 0.00 0.00 1.73
1648 1797 1.703411 CCTTCAAAGGCTTGGAACCA 58.297 50.000 13.08 0.00 39.76 3.67
1670 1819 2.279582 AAGTCTGTCGATGCCGTAAG 57.720 50.000 0.00 0.00 37.05 2.34
1745 1894 8.964476 TTTCTTCAGATATCCAACCAAGTATC 57.036 34.615 0.00 0.00 0.00 2.24
1775 1924 7.288810 TCAGTGATTATTTTTGGCTTCTGTT 57.711 32.000 0.00 0.00 0.00 3.16
1904 2055 2.170607 ACTCAAATCCATGTCGTAGGGG 59.829 50.000 0.00 0.00 0.00 4.79
1996 2156 4.400567 AGCAAAAGGTCTGGAAATGATAGC 59.599 41.667 0.00 0.00 0.00 2.97
2002 2162 7.301868 TGATAAAAGCAAAAGGTCTGGAAAT 57.698 32.000 0.00 0.00 0.00 2.17
2058 2218 1.801309 TTTTTACAGCCGGCCACAGC 61.801 55.000 26.15 1.61 38.76 4.40
2201 2361 9.755064 CGGTAAAACACAATAGAAGTATGAAAG 57.245 33.333 0.00 0.00 0.00 2.62
2250 2410 6.721208 TCAAATGGAGTAAGGATTTTTCAGCT 59.279 34.615 0.00 0.00 0.00 4.24
2251 2411 6.924111 TCAAATGGAGTAAGGATTTTTCAGC 58.076 36.000 0.00 0.00 0.00 4.26
2304 2464 7.812690 AGCATACTTTATGATCTGCAAATGA 57.187 32.000 0.00 0.00 38.45 2.57
2327 2487 3.525537 ACATAAAGATCAGCACGTGGAG 58.474 45.455 18.88 0.00 0.00 3.86
2332 2492 6.110543 TCAATGAACATAAAGATCAGCACG 57.889 37.500 0.00 0.00 32.14 5.34
2361 2521 4.038642 TCCAAATGTGGTTTGCCTAGTTTC 59.961 41.667 0.65 0.00 46.11 2.78
2406 2566 1.181098 TGCAAAGAAAGGCCAGGAGC 61.181 55.000 5.01 0.00 42.60 4.70
2408 2568 0.478072 TCTGCAAAGAAAGGCCAGGA 59.522 50.000 5.01 0.00 0.00 3.86
2414 2574 2.224606 TCACTGCTCTGCAAAGAAAGG 58.775 47.619 0.00 0.00 38.41 3.11
2421 2581 6.114767 TGATGTTATTATCACTGCTCTGCAA 58.885 36.000 0.00 0.00 33.37 4.08
2425 2585 7.385267 GGATCTGATGTTATTATCACTGCTCT 58.615 38.462 0.00 0.00 33.71 4.09
2426 2586 6.309980 CGGATCTGATGTTATTATCACTGCTC 59.690 42.308 0.00 0.00 33.71 4.26
2442 2618 3.561143 ACAGAGCTAACTCGGATCTGAT 58.439 45.455 14.42 0.00 46.29 2.90
2451 2627 6.924060 TGAAACTAAACAGACAGAGCTAACTC 59.076 38.462 0.00 0.00 43.82 3.01
2457 2633 6.793492 ATCTTGAAACTAAACAGACAGAGC 57.207 37.500 0.00 0.00 0.00 4.09
2458 2634 9.482627 AGTTATCTTGAAACTAAACAGACAGAG 57.517 33.333 0.00 0.00 35.44 3.35
2495 2671 8.441312 ACGTCCAGAATTAAAGTAAGTGAAAA 57.559 30.769 0.00 0.00 0.00 2.29
2516 2692 4.251268 ACAAGTAAGCAAGGGATAACGTC 58.749 43.478 0.00 0.00 0.00 4.34
2519 2695 5.959618 ACAACAAGTAAGCAAGGGATAAC 57.040 39.130 0.00 0.00 0.00 1.89
2522 2698 5.453198 CCAAAACAACAAGTAAGCAAGGGAT 60.453 40.000 0.00 0.00 0.00 3.85
2543 2719 9.163899 GTTTCCAACTTTTTACCAAATTACCAA 57.836 29.630 0.00 0.00 0.00 3.67
2544 2720 8.541234 AGTTTCCAACTTTTTACCAAATTACCA 58.459 29.630 0.00 0.00 39.04 3.25
2545 2721 8.951787 AGTTTCCAACTTTTTACCAAATTACC 57.048 30.769 0.00 0.00 39.04 2.85
2547 2723 9.752961 GCTAGTTTCCAACTTTTTACCAAATTA 57.247 29.630 0.00 0.00 42.81 1.40
2548 2724 8.261522 TGCTAGTTTCCAACTTTTTACCAAATT 58.738 29.630 0.00 0.00 42.81 1.82
2549 2725 7.787028 TGCTAGTTTCCAACTTTTTACCAAAT 58.213 30.769 0.00 0.00 42.81 2.32
2550 2726 7.122948 TCTGCTAGTTTCCAACTTTTTACCAAA 59.877 33.333 0.00 0.00 42.81 3.28
2551 2727 6.603997 TCTGCTAGTTTCCAACTTTTTACCAA 59.396 34.615 0.00 0.00 42.81 3.67
2552 2728 6.123651 TCTGCTAGTTTCCAACTTTTTACCA 58.876 36.000 0.00 0.00 42.81 3.25
2553 2729 6.628919 TCTGCTAGTTTCCAACTTTTTACC 57.371 37.500 0.00 0.00 42.81 2.85
2558 2734 9.515226 TGTATAATTCTGCTAGTTTCCAACTTT 57.485 29.630 0.00 0.00 42.81 2.66
2559 2735 9.686683 ATGTATAATTCTGCTAGTTTCCAACTT 57.313 29.630 0.00 0.00 42.81 2.66
2560 2736 9.113838 CATGTATAATTCTGCTAGTTTCCAACT 57.886 33.333 0.00 0.00 45.40 3.16
2561 2737 9.109393 TCATGTATAATTCTGCTAGTTTCCAAC 57.891 33.333 0.00 0.00 0.00 3.77
2562 2738 9.330063 CTCATGTATAATTCTGCTAGTTTCCAA 57.670 33.333 0.00 0.00 0.00 3.53
2563 2739 7.442364 GCTCATGTATAATTCTGCTAGTTTCCA 59.558 37.037 0.00 0.00 0.00 3.53
2564 2740 7.659390 AGCTCATGTATAATTCTGCTAGTTTCC 59.341 37.037 0.00 0.00 0.00 3.13
2565 2741 8.600449 AGCTCATGTATAATTCTGCTAGTTTC 57.400 34.615 0.00 0.00 0.00 2.78
2566 2742 9.703892 CTAGCTCATGTATAATTCTGCTAGTTT 57.296 33.333 0.00 0.00 41.90 2.66
2567 2743 7.816995 GCTAGCTCATGTATAATTCTGCTAGTT 59.183 37.037 7.70 0.00 45.87 2.24
2568 2744 7.039434 TGCTAGCTCATGTATAATTCTGCTAGT 60.039 37.037 17.23 0.00 45.87 2.57
2569 2745 7.318893 TGCTAGCTCATGTATAATTCTGCTAG 58.681 38.462 17.23 12.55 46.47 3.42
2570 2746 7.232118 TGCTAGCTCATGTATAATTCTGCTA 57.768 36.000 17.23 0.00 0.00 3.49
2571 2747 6.106648 TGCTAGCTCATGTATAATTCTGCT 57.893 37.500 17.23 0.00 0.00 4.24
2572 2748 6.592994 TGATGCTAGCTCATGTATAATTCTGC 59.407 38.462 17.23 0.00 0.00 4.26
2573 2749 8.033626 TCTGATGCTAGCTCATGTATAATTCTG 58.966 37.037 17.23 1.81 0.00 3.02
2574 2750 8.034215 GTCTGATGCTAGCTCATGTATAATTCT 58.966 37.037 17.23 0.00 0.00 2.40
2575 2751 7.277539 GGTCTGATGCTAGCTCATGTATAATTC 59.722 40.741 17.23 0.00 0.00 2.17
2576 2752 7.102346 GGTCTGATGCTAGCTCATGTATAATT 58.898 38.462 17.23 0.00 0.00 1.40
2577 2753 6.212187 TGGTCTGATGCTAGCTCATGTATAAT 59.788 38.462 17.23 0.00 0.00 1.28
2578 2754 5.539955 TGGTCTGATGCTAGCTCATGTATAA 59.460 40.000 17.23 0.00 0.00 0.98
2579 2755 5.079643 TGGTCTGATGCTAGCTCATGTATA 58.920 41.667 17.23 0.00 0.00 1.47
2580 2756 3.899980 TGGTCTGATGCTAGCTCATGTAT 59.100 43.478 17.23 0.00 0.00 2.29
2581 2757 3.299503 TGGTCTGATGCTAGCTCATGTA 58.700 45.455 17.23 0.00 0.00 2.29
2582 2758 2.113807 TGGTCTGATGCTAGCTCATGT 58.886 47.619 17.23 0.00 0.00 3.21
2583 2759 2.904697 TGGTCTGATGCTAGCTCATG 57.095 50.000 17.23 10.52 0.00 3.07
2584 2760 3.920231 TTTGGTCTGATGCTAGCTCAT 57.080 42.857 17.23 1.03 0.00 2.90
2585 2761 3.701205 TTTTGGTCTGATGCTAGCTCA 57.299 42.857 17.23 15.15 0.00 4.26
2586 2762 4.194640 TCATTTTGGTCTGATGCTAGCTC 58.805 43.478 17.23 11.33 0.00 4.09
2587 2763 4.226427 TCATTTTGGTCTGATGCTAGCT 57.774 40.909 17.23 0.83 0.00 3.32
2588 2764 5.279384 CAATCATTTTGGTCTGATGCTAGC 58.721 41.667 8.10 8.10 32.56 3.42
2589 2765 5.221185 CCCAATCATTTTGGTCTGATGCTAG 60.221 44.000 3.86 0.00 37.88 3.42
2590 2766 4.646040 CCCAATCATTTTGGTCTGATGCTA 59.354 41.667 3.86 0.00 37.88 3.49
2591 2767 3.449737 CCCAATCATTTTGGTCTGATGCT 59.550 43.478 3.86 0.00 37.88 3.79
2592 2768 3.448301 TCCCAATCATTTTGGTCTGATGC 59.552 43.478 3.86 0.00 37.88 3.91
2593 2769 5.664294 TTCCCAATCATTTTGGTCTGATG 57.336 39.130 3.86 0.00 37.88 3.07
2594 2770 6.879367 AATTCCCAATCATTTTGGTCTGAT 57.121 33.333 3.86 0.00 37.88 2.90
2595 2771 6.269538 TGAAATTCCCAATCATTTTGGTCTGA 59.730 34.615 3.86 0.00 37.88 3.27
2596 2772 6.465948 TGAAATTCCCAATCATTTTGGTCTG 58.534 36.000 3.86 0.00 37.88 3.51
2597 2773 6.684897 TGAAATTCCCAATCATTTTGGTCT 57.315 33.333 3.86 0.00 37.88 3.85
2598 2774 6.709846 TGTTGAAATTCCCAATCATTTTGGTC 59.290 34.615 3.86 0.00 37.88 4.02
2599 2775 6.599445 TGTTGAAATTCCCAATCATTTTGGT 58.401 32.000 3.86 0.00 37.88 3.67
2600 2776 7.175293 ACATGTTGAAATTCCCAATCATTTTGG 59.825 33.333 0.00 0.00 39.25 3.28
2601 2777 8.018520 CACATGTTGAAATTCCCAATCATTTTG 58.981 33.333 0.00 0.00 0.00 2.44
2602 2778 7.308710 GCACATGTTGAAATTCCCAATCATTTT 60.309 33.333 0.00 0.00 0.00 1.82
2603 2779 6.149807 GCACATGTTGAAATTCCCAATCATTT 59.850 34.615 0.00 0.00 0.00 2.32
2604 2780 5.644636 GCACATGTTGAAATTCCCAATCATT 59.355 36.000 0.00 0.00 0.00 2.57
2605 2781 5.046159 AGCACATGTTGAAATTCCCAATCAT 60.046 36.000 0.00 1.81 0.00 2.45
2606 2782 4.283978 AGCACATGTTGAAATTCCCAATCA 59.716 37.500 0.00 0.00 0.00 2.57
2607 2783 4.824289 AGCACATGTTGAAATTCCCAATC 58.176 39.130 0.00 0.00 0.00 2.67
2608 2784 4.322953 GGAGCACATGTTGAAATTCCCAAT 60.323 41.667 0.00 0.00 0.00 3.16
2609 2785 3.006752 GGAGCACATGTTGAAATTCCCAA 59.993 43.478 0.00 0.00 0.00 4.12
2610 2786 2.562298 GGAGCACATGTTGAAATTCCCA 59.438 45.455 0.00 0.00 0.00 4.37
2611 2787 2.827921 AGGAGCACATGTTGAAATTCCC 59.172 45.455 0.00 0.00 0.00 3.97
2612 2788 3.760684 AGAGGAGCACATGTTGAAATTCC 59.239 43.478 0.00 0.00 0.00 3.01
2613 2789 5.159209 CAAGAGGAGCACATGTTGAAATTC 58.841 41.667 0.00 0.00 33.92 2.17
2614 2790 4.586001 ACAAGAGGAGCACATGTTGAAATT 59.414 37.500 12.24 0.00 35.27 1.82
2615 2791 4.147321 ACAAGAGGAGCACATGTTGAAAT 58.853 39.130 12.24 0.00 35.27 2.17
2616 2792 3.554934 ACAAGAGGAGCACATGTTGAAA 58.445 40.909 12.24 0.00 35.27 2.69
2617 2793 3.213206 ACAAGAGGAGCACATGTTGAA 57.787 42.857 12.24 0.00 35.27 2.69
2618 2794 2.936919 ACAAGAGGAGCACATGTTGA 57.063 45.000 12.24 0.00 35.27 3.18
2619 2795 3.567164 AGAAACAAGAGGAGCACATGTTG 59.433 43.478 4.24 4.24 37.17 3.33
2620 2796 3.817647 GAGAAACAAGAGGAGCACATGTT 59.182 43.478 0.00 0.00 35.86 2.71
2621 2797 3.406764 GAGAAACAAGAGGAGCACATGT 58.593 45.455 0.00 0.00 0.00 3.21
2622 2798 2.746362 GGAGAAACAAGAGGAGCACATG 59.254 50.000 0.00 0.00 0.00 3.21
2623 2799 2.641815 AGGAGAAACAAGAGGAGCACAT 59.358 45.455 0.00 0.00 0.00 3.21
2624 2800 2.050144 AGGAGAAACAAGAGGAGCACA 58.950 47.619 0.00 0.00 0.00 4.57
2625 2801 2.849294 AGGAGAAACAAGAGGAGCAC 57.151 50.000 0.00 0.00 0.00 4.40
2626 2802 2.234908 GCTAGGAGAAACAAGAGGAGCA 59.765 50.000 0.00 0.00 0.00 4.26
2627 2803 2.234908 TGCTAGGAGAAACAAGAGGAGC 59.765 50.000 0.00 0.00 0.00 4.70
2628 2804 3.513515 AGTGCTAGGAGAAACAAGAGGAG 59.486 47.826 0.00 0.00 0.00 3.69
2629 2805 3.511477 AGTGCTAGGAGAAACAAGAGGA 58.489 45.455 0.00 0.00 0.00 3.71
2630 2806 3.971245 AGTGCTAGGAGAAACAAGAGG 57.029 47.619 0.00 0.00 0.00 3.69
2631 2807 4.081972 TGCTAGTGCTAGGAGAAACAAGAG 60.082 45.833 8.16 0.00 40.48 2.85
2632 2808 3.832490 TGCTAGTGCTAGGAGAAACAAGA 59.168 43.478 8.16 0.00 40.48 3.02
2633 2809 4.193826 TGCTAGTGCTAGGAGAAACAAG 57.806 45.455 8.16 0.00 40.48 3.16
2640 2816 1.769026 TGTCCTGCTAGTGCTAGGAG 58.231 55.000 17.35 17.35 46.91 3.69
2641 2817 2.461300 ATGTCCTGCTAGTGCTAGGA 57.539 50.000 8.16 4.53 41.07 2.94
2642 2818 4.672587 TTTATGTCCTGCTAGTGCTAGG 57.327 45.455 8.16 0.00 40.48 3.02
2643 2819 6.051717 ACAATTTATGTCCTGCTAGTGCTAG 58.948 40.000 2.04 2.04 37.96 3.42
2644 2820 5.989477 ACAATTTATGTCCTGCTAGTGCTA 58.011 37.500 0.00 0.00 37.96 3.49
2645 2821 4.848357 ACAATTTATGTCCTGCTAGTGCT 58.152 39.130 0.00 0.00 37.96 4.40
2646 2822 5.584649 TGTACAATTTATGTCCTGCTAGTGC 59.415 40.000 0.00 0.00 42.70 4.40
2647 2823 7.792374 ATGTACAATTTATGTCCTGCTAGTG 57.208 36.000 0.00 0.00 42.70 2.74
2648 2824 8.046708 TCAATGTACAATTTATGTCCTGCTAGT 58.953 33.333 0.00 0.00 42.70 2.57
2649 2825 8.437360 TCAATGTACAATTTATGTCCTGCTAG 57.563 34.615 0.00 0.00 42.70 3.42
2650 2826 7.498900 CCTCAATGTACAATTTATGTCCTGCTA 59.501 37.037 0.00 0.00 42.70 3.49
2651 2827 6.319658 CCTCAATGTACAATTTATGTCCTGCT 59.680 38.462 0.00 0.00 42.70 4.24
2652 2828 6.460123 CCCTCAATGTACAATTTATGTCCTGC 60.460 42.308 0.00 0.00 42.70 4.85
2653 2829 6.828273 TCCCTCAATGTACAATTTATGTCCTG 59.172 38.462 0.00 0.00 42.70 3.86
2654 2830 6.969043 TCCCTCAATGTACAATTTATGTCCT 58.031 36.000 0.00 0.00 42.70 3.85
2655 2831 7.823745 ATCCCTCAATGTACAATTTATGTCC 57.176 36.000 0.00 0.00 42.70 4.02
2656 2832 7.649306 GCAATCCCTCAATGTACAATTTATGTC 59.351 37.037 0.00 0.00 42.70 3.06
2657 2833 7.123997 TGCAATCCCTCAATGTACAATTTATGT 59.876 33.333 0.00 0.00 46.36 2.29
2658 2834 7.490840 TGCAATCCCTCAATGTACAATTTATG 58.509 34.615 0.00 0.00 0.00 1.90
2659 2835 7.658525 TGCAATCCCTCAATGTACAATTTAT 57.341 32.000 0.00 0.00 0.00 1.40
2660 2836 7.363705 CCTTGCAATCCCTCAATGTACAATTTA 60.364 37.037 0.00 0.00 0.00 1.40
2661 2837 5.999205 TGCAATCCCTCAATGTACAATTT 57.001 34.783 0.00 0.00 0.00 1.82
2662 2838 5.105228 CCTTGCAATCCCTCAATGTACAATT 60.105 40.000 0.00 0.00 0.00 2.32
2663 2839 4.403432 CCTTGCAATCCCTCAATGTACAAT 59.597 41.667 0.00 0.00 0.00 2.71
2664 2840 3.763360 CCTTGCAATCCCTCAATGTACAA 59.237 43.478 0.00 0.00 0.00 2.41
2665 2841 3.355378 CCTTGCAATCCCTCAATGTACA 58.645 45.455 0.00 0.00 0.00 2.90
2666 2842 2.689983 CCCTTGCAATCCCTCAATGTAC 59.310 50.000 0.00 0.00 0.00 2.90
2667 2843 2.358090 CCCCTTGCAATCCCTCAATGTA 60.358 50.000 0.00 0.00 0.00 2.29
2668 2844 1.620524 CCCCTTGCAATCCCTCAATGT 60.621 52.381 0.00 0.00 0.00 2.71
2669 2845 1.117150 CCCCTTGCAATCCCTCAATG 58.883 55.000 0.00 0.00 0.00 2.82
2670 2846 0.688749 GCCCCTTGCAATCCCTCAAT 60.689 55.000 0.00 0.00 40.77 2.57
2671 2847 1.305213 GCCCCTTGCAATCCCTCAA 60.305 57.895 0.00 0.00 40.77 3.02
2672 2848 2.360191 GCCCCTTGCAATCCCTCA 59.640 61.111 0.00 0.00 40.77 3.86
2681 2857 1.069596 CCTTGTGTTTGCCCCTTGC 59.930 57.895 0.00 0.00 41.77 4.01
2682 2858 1.118838 TTCCTTGTGTTTGCCCCTTG 58.881 50.000 0.00 0.00 0.00 3.61
2683 2859 1.119684 GTTCCTTGTGTTTGCCCCTT 58.880 50.000 0.00 0.00 0.00 3.95
2684 2860 0.032615 TGTTCCTTGTGTTTGCCCCT 60.033 50.000 0.00 0.00 0.00 4.79
2685 2861 1.000843 GATGTTCCTTGTGTTTGCCCC 59.999 52.381 0.00 0.00 0.00 5.80
2686 2862 1.963515 AGATGTTCCTTGTGTTTGCCC 59.036 47.619 0.00 0.00 0.00 5.36
2687 2863 2.362077 ACAGATGTTCCTTGTGTTTGCC 59.638 45.455 0.00 0.00 0.00 4.52
2688 2864 3.066621 TGACAGATGTTCCTTGTGTTTGC 59.933 43.478 0.00 0.00 0.00 3.68
2689 2865 4.898829 TGACAGATGTTCCTTGTGTTTG 57.101 40.909 0.00 0.00 0.00 2.93
2690 2866 5.240183 CAGATGACAGATGTTCCTTGTGTTT 59.760 40.000 0.00 0.00 0.00 2.83
2691 2867 4.758674 CAGATGACAGATGTTCCTTGTGTT 59.241 41.667 0.00 0.00 0.00 3.32
2692 2868 4.202398 ACAGATGACAGATGTTCCTTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
2693 2869 4.153655 CACAGATGACAGATGTTCCTTGTG 59.846 45.833 7.00 7.00 0.00 3.33
2694 2870 4.321718 CACAGATGACAGATGTTCCTTGT 58.678 43.478 0.00 0.00 0.00 3.16
2695 2871 3.126514 GCACAGATGACAGATGTTCCTTG 59.873 47.826 0.00 0.00 0.00 3.61
2696 2872 3.008813 AGCACAGATGACAGATGTTCCTT 59.991 43.478 0.00 0.00 0.00 3.36
2697 2873 2.570752 AGCACAGATGACAGATGTTCCT 59.429 45.455 0.00 0.00 0.00 3.36
2698 2874 2.983229 AGCACAGATGACAGATGTTCC 58.017 47.619 0.00 0.00 0.00 3.62
2699 2875 4.453478 TGAAAGCACAGATGACAGATGTTC 59.547 41.667 0.00 0.00 0.00 3.18
2700 2876 4.392047 TGAAAGCACAGATGACAGATGTT 58.608 39.130 0.00 0.00 0.00 2.71
2701 2877 4.011966 TGAAAGCACAGATGACAGATGT 57.988 40.909 0.00 0.00 0.00 3.06
2702 2878 5.123344 TGATTGAAAGCACAGATGACAGATG 59.877 40.000 0.00 0.00 0.00 2.90
2703 2879 5.250982 TGATTGAAAGCACAGATGACAGAT 58.749 37.500 0.00 0.00 0.00 2.90
2704 2880 4.644498 TGATTGAAAGCACAGATGACAGA 58.356 39.130 0.00 0.00 0.00 3.41
2705 2881 5.562506 ATGATTGAAAGCACAGATGACAG 57.437 39.130 0.00 0.00 0.00 3.51
2706 2882 5.242171 ACAATGATTGAAAGCACAGATGACA 59.758 36.000 12.80 0.00 0.00 3.58
2707 2883 5.571741 CACAATGATTGAAAGCACAGATGAC 59.428 40.000 12.80 0.00 0.00 3.06
2708 2884 5.474189 TCACAATGATTGAAAGCACAGATGA 59.526 36.000 12.80 0.00 0.00 2.92
2709 2885 5.705902 TCACAATGATTGAAAGCACAGATG 58.294 37.500 12.80 0.00 0.00 2.90
2710 2886 5.970317 TCACAATGATTGAAAGCACAGAT 57.030 34.783 12.80 0.00 0.00 2.90
2711 2887 5.532032 TCTTCACAATGATTGAAAGCACAGA 59.468 36.000 12.80 0.90 32.61 3.41
2712 2888 5.765176 TCTTCACAATGATTGAAAGCACAG 58.235 37.500 12.80 0.00 32.61 3.66
2713 2889 5.771153 TCTTCACAATGATTGAAAGCACA 57.229 34.783 12.80 0.00 32.61 4.57
2714 2890 5.575606 CCATCTTCACAATGATTGAAAGCAC 59.424 40.000 12.80 0.00 32.61 4.40
2715 2891 5.716094 CCATCTTCACAATGATTGAAAGCA 58.284 37.500 12.80 6.09 32.61 3.91
2716 2892 4.565564 GCCATCTTCACAATGATTGAAAGC 59.434 41.667 12.80 2.55 32.61 3.51
2717 2893 5.716094 TGCCATCTTCACAATGATTGAAAG 58.284 37.500 12.80 13.86 32.61 2.62
2718 2894 5.725325 TGCCATCTTCACAATGATTGAAA 57.275 34.783 12.80 5.04 32.61 2.69
2719 2895 5.477637 TCTTGCCATCTTCACAATGATTGAA 59.522 36.000 12.80 0.00 0.00 2.69
2720 2896 5.011586 TCTTGCCATCTTCACAATGATTGA 58.988 37.500 12.80 0.00 0.00 2.57
2721 2897 5.124936 TCTCTTGCCATCTTCACAATGATTG 59.875 40.000 3.16 3.16 0.00 2.67
2722 2898 5.125097 GTCTCTTGCCATCTTCACAATGATT 59.875 40.000 0.00 0.00 0.00 2.57
2723 2899 4.639310 GTCTCTTGCCATCTTCACAATGAT 59.361 41.667 0.00 0.00 0.00 2.45
2724 2900 4.005650 GTCTCTTGCCATCTTCACAATGA 58.994 43.478 0.00 0.00 0.00 2.57
2725 2901 3.754850 TGTCTCTTGCCATCTTCACAATG 59.245 43.478 0.00 0.00 0.00 2.82
2726 2902 4.025040 TGTCTCTTGCCATCTTCACAAT 57.975 40.909 0.00 0.00 0.00 2.71
2727 2903 3.490439 TGTCTCTTGCCATCTTCACAA 57.510 42.857 0.00 0.00 0.00 3.33
2728 2904 3.490439 TTGTCTCTTGCCATCTTCACA 57.510 42.857 0.00 0.00 0.00 3.58
2729 2905 4.036734 TGTTTTGTCTCTTGCCATCTTCAC 59.963 41.667 0.00 0.00 0.00 3.18
2730 2906 4.206375 TGTTTTGTCTCTTGCCATCTTCA 58.794 39.130 0.00 0.00 0.00 3.02
2731 2907 4.836125 TGTTTTGTCTCTTGCCATCTTC 57.164 40.909 0.00 0.00 0.00 2.87
2732 2908 4.586001 ACATGTTTTGTCTCTTGCCATCTT 59.414 37.500 0.00 0.00 30.89 2.40
2733 2909 4.147321 ACATGTTTTGTCTCTTGCCATCT 58.853 39.130 0.00 0.00 30.89 2.90
2734 2910 4.510038 ACATGTTTTGTCTCTTGCCATC 57.490 40.909 0.00 0.00 30.89 3.51
2735 2911 4.826733 TGTACATGTTTTGTCTCTTGCCAT 59.173 37.500 2.30 0.00 39.87 4.40
2736 2912 4.203226 TGTACATGTTTTGTCTCTTGCCA 58.797 39.130 2.30 0.00 39.87 4.92
2737 2913 4.829064 TGTACATGTTTTGTCTCTTGCC 57.171 40.909 2.30 0.00 39.87 4.52
2751 2927 5.874810 AGGTTAACAGCAGTACATGTACATG 59.125 40.000 32.02 29.97 44.15 3.21
2752 2928 6.049955 AGGTTAACAGCAGTACATGTACAT 57.950 37.500 32.02 17.82 38.48 2.29
2753 2929 5.477607 AGGTTAACAGCAGTACATGTACA 57.522 39.130 32.02 11.58 38.48 2.90
2754 2930 5.519206 GCTAGGTTAACAGCAGTACATGTAC 59.481 44.000 25.51 25.51 37.73 2.90
2755 2931 5.186215 TGCTAGGTTAACAGCAGTACATGTA 59.814 40.000 14.73 0.08 42.68 2.29
2756 2932 4.020573 TGCTAGGTTAACAGCAGTACATGT 60.021 41.667 14.73 2.69 42.68 3.21
2757 2933 4.503910 TGCTAGGTTAACAGCAGTACATG 58.496 43.478 14.73 0.00 42.68 3.21
2758 2934 4.819105 TGCTAGGTTAACAGCAGTACAT 57.181 40.909 14.73 0.00 42.68 2.29
2764 2940 3.071023 AGACAGTTGCTAGGTTAACAGCA 59.929 43.478 14.73 14.73 45.72 4.41
2765 2941 3.665190 AGACAGTTGCTAGGTTAACAGC 58.335 45.455 8.10 9.34 38.31 4.40
2766 2942 4.883083 TGAGACAGTTGCTAGGTTAACAG 58.117 43.478 8.10 0.00 0.00 3.16
2767 2943 4.948341 TGAGACAGTTGCTAGGTTAACA 57.052 40.909 8.10 0.00 0.00 2.41
2768 2944 4.631813 CCATGAGACAGTTGCTAGGTTAAC 59.368 45.833 0.00 0.00 0.00 2.01
2769 2945 4.286032 ACCATGAGACAGTTGCTAGGTTAA 59.714 41.667 0.00 0.00 0.00 2.01
2770 2946 3.838317 ACCATGAGACAGTTGCTAGGTTA 59.162 43.478 0.00 0.00 0.00 2.85
2771 2947 2.639839 ACCATGAGACAGTTGCTAGGTT 59.360 45.455 0.00 0.00 0.00 3.50
2772 2948 2.234908 GACCATGAGACAGTTGCTAGGT 59.765 50.000 0.00 0.00 0.00 3.08
2773 2949 2.499289 AGACCATGAGACAGTTGCTAGG 59.501 50.000 0.00 0.00 0.00 3.02
2774 2950 3.883830 AGACCATGAGACAGTTGCTAG 57.116 47.619 0.00 0.00 0.00 3.42
2775 2951 4.563580 GGAAAGACCATGAGACAGTTGCTA 60.564 45.833 0.00 0.00 38.79 3.49
2776 2952 3.406764 GAAAGACCATGAGACAGTTGCT 58.593 45.455 0.00 0.00 0.00 3.91
2777 2953 2.485814 GGAAAGACCATGAGACAGTTGC 59.514 50.000 0.00 0.00 38.79 4.17
2778 2954 4.013267 AGGAAAGACCATGAGACAGTTG 57.987 45.455 0.00 0.00 42.04 3.16
2779 2955 4.713792 AAGGAAAGACCATGAGACAGTT 57.286 40.909 0.00 0.00 42.04 3.16
2780 2956 4.841246 AGTAAGGAAAGACCATGAGACAGT 59.159 41.667 0.00 0.00 42.04 3.55
2781 2957 5.413309 AGTAAGGAAAGACCATGAGACAG 57.587 43.478 0.00 0.00 42.04 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.