Multiple sequence alignment - TraesCS5D01G547500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G547500 chr5D 100.000 5847 0 0 1 5847 555554759 555560605 0.000000e+00 10798.0
1 TraesCS5D01G547500 chr5D 87.115 3966 489 18 363 4319 555635445 555639397 0.000000e+00 4473.0
2 TraesCS5D01G547500 chr5D 79.960 3528 680 23 700 4215 495551890 495548378 0.000000e+00 2573.0
3 TraesCS5D01G547500 chr5D 79.471 3439 638 55 775 4186 555062245 555065642 0.000000e+00 2377.0
4 TraesCS5D01G547500 chr5D 79.503 3303 642 30 881 4168 555906874 555910156 0.000000e+00 2316.0
5 TraesCS5D01G547500 chr5D 78.709 3485 678 55 775 4224 555501378 555504833 0.000000e+00 2266.0
6 TraesCS5D01G547500 chr5D 78.296 2723 531 52 967 3662 555356792 555359481 0.000000e+00 1700.0
7 TraesCS5D01G547500 chr5D 79.078 2385 465 28 1859 4229 555488303 555490667 0.000000e+00 1609.0
8 TraesCS5D01G547500 chr5D 89.333 375 27 8 1 366 555635028 555635398 5.340000e-125 459.0
9 TraesCS5D01G547500 chr5D 89.286 364 34 3 5016 5374 486766163 486765800 8.930000e-123 451.0
10 TraesCS5D01G547500 chr5D 88.372 258 24 6 4400 4655 555639588 555639841 7.360000e-79 305.0
11 TraesCS5D01G547500 chr5D 80.952 273 27 14 433 685 495552551 495552284 5.980000e-45 193.0
12 TraesCS5D01G547500 chr5D 90.909 44 4 0 223 266 410345676 410345719 6.330000e-05 60.2
13 TraesCS5D01G547500 chr5B 96.674 3879 124 3 362 4236 695814796 695810919 0.000000e+00 6444.0
14 TraesCS5D01G547500 chr5B 94.064 2864 143 16 1560 4403 695695979 695693123 0.000000e+00 4322.0
15 TraesCS5D01G547500 chr5B 79.609 3423 642 46 776 4173 695493864 695490473 0.000000e+00 2403.0
16 TraesCS5D01G547500 chr5B 78.509 3299 658 46 884 4159 571606225 571609495 0.000000e+00 2117.0
17 TraesCS5D01G547500 chr5B 80.266 1956 354 25 2252 4195 695875774 695873839 0.000000e+00 1445.0
18 TraesCS5D01G547500 chr5B 93.896 557 34 0 362 918 695700790 695700234 0.000000e+00 841.0
19 TraesCS5D01G547500 chr5B 89.674 368 33 4 1 366 695701201 695700837 1.150000e-126 464.0
20 TraesCS5D01G547500 chr5B 88.754 329 31 6 42 366 695815169 695814843 1.180000e-106 398.0
21 TraesCS5D01G547500 chr5B 82.171 258 16 7 4400 4655 695693032 695692803 1.660000e-45 195.0
22 TraesCS5D01G547500 chr5B 91.489 94 5 2 4551 4644 695810559 695810469 6.150000e-25 126.0
23 TraesCS5D01G547500 chr5B 93.671 79 4 1 4400 4477 695810689 695810611 3.700000e-22 117.0
24 TraesCS5D01G547500 chr1B 78.952 3112 605 44 1087 4173 433644484 433641398 0.000000e+00 2073.0
25 TraesCS5D01G547500 chr3A 78.063 3346 682 44 849 4173 44605572 44608886 0.000000e+00 2065.0
26 TraesCS5D01G547500 chr3D 77.158 3047 649 33 1142 4173 32206652 32209666 0.000000e+00 1727.0
27 TraesCS5D01G547500 chr3D 84.507 71 11 0 180 250 599325770 599325840 2.920000e-08 71.3
28 TraesCS5D01G547500 chr6D 72.388 3379 836 79 840 4157 469066877 469070219 0.000000e+00 981.0
29 TraesCS5D01G547500 chr7B 87.486 863 78 11 5010 5847 149346486 149347343 0.000000e+00 968.0
30 TraesCS5D01G547500 chr5A 84.838 864 93 20 5009 5843 704018158 704017304 0.000000e+00 835.0
31 TraesCS5D01G547500 chr5A 84.465 869 92 24 5009 5843 704132144 704131285 0.000000e+00 817.0
32 TraesCS5D01G547500 chr5A 84.138 870 95 22 5008 5843 704102238 704101378 0.000000e+00 802.0
33 TraesCS5D01G547500 chr5A 84.120 869 95 22 5009 5843 704219556 704218697 0.000000e+00 800.0
34 TraesCS5D01G547500 chr5A 83.963 873 93 20 5009 5843 704222733 704221870 0.000000e+00 793.0
35 TraesCS5D01G547500 chr5A 82.857 525 58 16 5348 5847 703971299 703970782 5.380000e-120 442.0
36 TraesCS5D01G547500 chrUn 84.465 869 92 24 5009 5843 376243257 376242398 0.000000e+00 817.0
37 TraesCS5D01G547500 chr6A 84.125 863 84 24 5010 5847 597317743 597318577 0.000000e+00 785.0
38 TraesCS5D01G547500 chr7A 83.488 860 97 22 5010 5847 195513856 195513020 0.000000e+00 760.0
39 TraesCS5D01G547500 chr7A 83.142 872 89 24 5009 5847 700493681 700492835 0.000000e+00 743.0
40 TraesCS5D01G547500 chr3B 85.470 702 75 12 5010 5685 106065659 106064959 0.000000e+00 706.0
41 TraesCS5D01G547500 chr7D 89.545 440 41 5 5009 5446 603143288 603142852 2.380000e-153 553.0
42 TraesCS5D01G547500 chr2B 83.662 557 61 17 5010 5539 602255774 602256327 1.130000e-136 497.0
43 TraesCS5D01G547500 chr2B 88.204 373 41 3 5006 5376 132335678 132336049 5.380000e-120 442.0
44 TraesCS5D01G547500 chr2B 92.079 101 6 2 5748 5847 602256326 602256425 2.200000e-29 141.0
45 TraesCS5D01G547500 chr2A 83.427 531 57 16 5010 5514 773370392 773369867 1.150000e-126 464.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G547500 chr5D 555554759 555560605 5846 False 10798.000000 10798 100.000000 1 5847 1 chr5D.!!$F6 5846
1 TraesCS5D01G547500 chr5D 555062245 555065642 3397 False 2377.000000 2377 79.471000 775 4186 1 chr5D.!!$F2 3411
2 TraesCS5D01G547500 chr5D 555906874 555910156 3282 False 2316.000000 2316 79.503000 881 4168 1 chr5D.!!$F7 3287
3 TraesCS5D01G547500 chr5D 555501378 555504833 3455 False 2266.000000 2266 78.709000 775 4224 1 chr5D.!!$F5 3449
4 TraesCS5D01G547500 chr5D 555635028 555639841 4813 False 1745.666667 4473 88.273333 1 4655 3 chr5D.!!$F8 4654
5 TraesCS5D01G547500 chr5D 555356792 555359481 2689 False 1700.000000 1700 78.296000 967 3662 1 chr5D.!!$F3 2695
6 TraesCS5D01G547500 chr5D 555488303 555490667 2364 False 1609.000000 1609 79.078000 1859 4229 1 chr5D.!!$F4 2370
7 TraesCS5D01G547500 chr5D 495548378 495552551 4173 True 1383.000000 2573 80.456000 433 4215 2 chr5D.!!$R2 3782
8 TraesCS5D01G547500 chr5B 695490473 695493864 3391 True 2403.000000 2403 79.609000 776 4173 1 chr5B.!!$R1 3397
9 TraesCS5D01G547500 chr5B 695692803 695695979 3176 True 2258.500000 4322 88.117500 1560 4655 2 chr5B.!!$R3 3095
10 TraesCS5D01G547500 chr5B 571606225 571609495 3270 False 2117.000000 2117 78.509000 884 4159 1 chr5B.!!$F1 3275
11 TraesCS5D01G547500 chr5B 695810469 695815169 4700 True 1771.250000 6444 92.647000 42 4644 4 chr5B.!!$R5 4602
12 TraesCS5D01G547500 chr5B 695873839 695875774 1935 True 1445.000000 1445 80.266000 2252 4195 1 chr5B.!!$R2 1943
13 TraesCS5D01G547500 chr5B 695700234 695701201 967 True 652.500000 841 91.785000 1 918 2 chr5B.!!$R4 917
14 TraesCS5D01G547500 chr1B 433641398 433644484 3086 True 2073.000000 2073 78.952000 1087 4173 1 chr1B.!!$R1 3086
15 TraesCS5D01G547500 chr3A 44605572 44608886 3314 False 2065.000000 2065 78.063000 849 4173 1 chr3A.!!$F1 3324
16 TraesCS5D01G547500 chr3D 32206652 32209666 3014 False 1727.000000 1727 77.158000 1142 4173 1 chr3D.!!$F1 3031
17 TraesCS5D01G547500 chr6D 469066877 469070219 3342 False 981.000000 981 72.388000 840 4157 1 chr6D.!!$F1 3317
18 TraesCS5D01G547500 chr7B 149346486 149347343 857 False 968.000000 968 87.486000 5010 5847 1 chr7B.!!$F1 837
19 TraesCS5D01G547500 chr5A 704017304 704018158 854 True 835.000000 835 84.838000 5009 5843 1 chr5A.!!$R2 834
20 TraesCS5D01G547500 chr5A 704131285 704132144 859 True 817.000000 817 84.465000 5009 5843 1 chr5A.!!$R4 834
21 TraesCS5D01G547500 chr5A 704101378 704102238 860 True 802.000000 802 84.138000 5008 5843 1 chr5A.!!$R3 835
22 TraesCS5D01G547500 chr5A 704218697 704222733 4036 True 796.500000 800 84.041500 5009 5843 2 chr5A.!!$R5 834
23 TraesCS5D01G547500 chr5A 703970782 703971299 517 True 442.000000 442 82.857000 5348 5847 1 chr5A.!!$R1 499
24 TraesCS5D01G547500 chrUn 376242398 376243257 859 True 817.000000 817 84.465000 5009 5843 1 chrUn.!!$R1 834
25 TraesCS5D01G547500 chr6A 597317743 597318577 834 False 785.000000 785 84.125000 5010 5847 1 chr6A.!!$F1 837
26 TraesCS5D01G547500 chr7A 195513020 195513856 836 True 760.000000 760 83.488000 5010 5847 1 chr7A.!!$R1 837
27 TraesCS5D01G547500 chr7A 700492835 700493681 846 True 743.000000 743 83.142000 5009 5847 1 chr7A.!!$R2 838
28 TraesCS5D01G547500 chr3B 106064959 106065659 700 True 706.000000 706 85.470000 5010 5685 1 chr3B.!!$R1 675
29 TraesCS5D01G547500 chr2B 602255774 602256425 651 False 319.000000 497 87.870500 5010 5847 2 chr2B.!!$F2 837
30 TraesCS5D01G547500 chr2A 773369867 773370392 525 True 464.000000 464 83.427000 5010 5514 1 chr2A.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 195 0.034337 GGCACACCTTCGGTTCACTA 59.966 55.000 0.00 0.00 31.02 2.74 F
878 1342 0.409092 ACTCCCACCAATGGCAATCA 59.591 50.000 0.00 0.00 45.76 2.57 F
1273 1737 1.420138 GTTCCAACCAACTCTCAGGGA 59.580 52.381 0.00 0.00 0.00 4.20 F
1677 2142 1.754803 AGGGCTTGCATCATGTCAATG 59.245 47.619 0.00 0.00 34.88 2.82 F
1733 2198 2.094752 GTGGATGTTGTACCAACATGGC 60.095 50.000 23.11 12.03 42.67 4.40 F
3340 3832 2.036604 TGTCAAGTGCTTCGTATGGTGA 59.963 45.455 0.00 0.00 0.00 4.02 F
4698 5393 0.248843 GCAGGAGCAGCAGAGTACTT 59.751 55.000 0.00 0.00 41.58 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1024 1488 0.833287 ATGCCCTGCAACGATAGAGT 59.167 50.000 0.00 0.00 43.62 3.24 R
2505 2978 5.573146 GCAGGTATCATTGAACTTAACTGC 58.427 41.667 16.11 16.11 45.09 4.40 R
3027 3514 2.224314 GCCAAAAGCTAGTGTGAGTGTC 59.776 50.000 0.00 0.00 38.99 3.67 R
3340 3832 2.301870 TCTTTATGAGGTTGCGGTGTCT 59.698 45.455 0.00 0.00 0.00 3.41 R
4013 4563 4.466726 GCTAGAAAGAGAGGAACCCTGTAA 59.533 45.833 0.00 0.00 31.76 2.41 R
4735 5430 0.180406 AACAACAGGGAAGCGTGAGT 59.820 50.000 0.00 0.00 0.00 3.41 R
5530 6300 2.056223 TAGCTTTAGGGCTCGCCGT 61.056 57.895 8.32 8.32 42.97 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 3.414700 CACGCCGAGGCAGACAAC 61.415 66.667 15.03 0.00 42.06 3.32
169 172 4.381718 GCTAGCCCATATAAGAAGTACGGG 60.382 50.000 2.29 0.00 35.18 5.28
172 175 3.245441 CCCATATAAGAAGTACGGGGGT 58.755 50.000 0.00 0.00 0.00 4.95
178 181 2.850130 AAGTACGGGGGTGGCACA 60.850 61.111 20.82 0.00 0.00 4.57
192 195 0.034337 GGCACACCTTCGGTTCACTA 59.966 55.000 0.00 0.00 31.02 2.74
195 198 2.828877 CACACCTTCGGTTCACTACAA 58.171 47.619 0.00 0.00 31.02 2.41
196 199 3.399330 CACACCTTCGGTTCACTACAAT 58.601 45.455 0.00 0.00 31.02 2.71
238 248 7.453393 AGATGGTCAACGAATATGGATGTAAT 58.547 34.615 0.00 0.00 0.00 1.89
266 276 7.698836 TGTTACTTAAGACGTTCTTTGTACC 57.301 36.000 10.09 4.51 37.89 3.34
267 277 7.264221 TGTTACTTAAGACGTTCTTTGTACCA 58.736 34.615 10.09 6.32 37.89 3.25
268 278 7.927629 TGTTACTTAAGACGTTCTTTGTACCAT 59.072 33.333 10.09 0.00 37.89 3.55
272 283 8.308931 ACTTAAGACGTTCTTTGTACCATATGA 58.691 33.333 10.09 0.00 37.89 2.15
310 321 5.593968 TCACGTAAGAAAGAAGTAAGTGCA 58.406 37.500 0.00 0.00 43.62 4.57
317 328 3.577805 AAGAAGTAAGTGCAACACCCT 57.422 42.857 0.00 0.00 41.43 4.34
348 360 7.118422 ACAAAATAAAGTTCAGAGCTACGTC 57.882 36.000 0.00 0.00 0.00 4.34
763 1224 1.535028 CAAGCTGTTCACCGCACATAA 59.465 47.619 0.00 0.00 0.00 1.90
857 1318 1.754226 GTCCATCTCGGCTTCTTCTCT 59.246 52.381 0.00 0.00 33.14 3.10
878 1342 0.409092 ACTCCCACCAATGGCAATCA 59.591 50.000 0.00 0.00 45.76 2.57
1024 1488 3.778969 CGTAGGCAACGTGTCACTA 57.221 52.632 0.65 0.00 46.72 2.74
1273 1737 1.420138 GTTCCAACCAACTCTCAGGGA 59.580 52.381 0.00 0.00 0.00 4.20
1460 1924 4.790937 TGTTGCATCCCTATTTATGCTCA 58.209 39.130 8.57 5.57 46.87 4.26
1617 2082 4.535526 ACCTCCCAATGTTGCAATTTAC 57.464 40.909 0.59 0.00 0.00 2.01
1677 2142 1.754803 AGGGCTTGCATCATGTCAATG 59.245 47.619 0.00 0.00 34.88 2.82
1695 2160 6.371548 TGTCAATGCCTACAAGTACTTGATTC 59.628 38.462 36.14 22.33 42.93 2.52
1733 2198 2.094752 GTGGATGTTGTACCAACATGGC 60.095 50.000 23.11 12.03 42.67 4.40
1810 2275 3.639094 GCTCAATCCCAGCTAGTCTAAGA 59.361 47.826 0.00 0.00 33.75 2.10
2071 2537 6.918892 TCGATTTGAGAGAAAACAACTTGA 57.081 33.333 0.00 0.00 0.00 3.02
2505 2978 9.622004 TTAGAAAACATCGACTTGTCTAGTAAG 57.378 33.333 0.00 7.61 37.17 2.34
2666 3148 4.579869 TCCAACTTCTTGATAGGAAGCAC 58.420 43.478 0.00 0.00 42.58 4.40
3027 3514 3.857052 TGTGCTACAAATTCTACTCCCG 58.143 45.455 0.00 0.00 0.00 5.14
3299 3791 2.203042 GCAGCTAGAGCAGGCCAG 60.203 66.667 5.01 0.00 45.16 4.85
3340 3832 2.036604 TGTCAAGTGCTTCGTATGGTGA 59.963 45.455 0.00 0.00 0.00 4.02
4013 4563 2.549754 CAAGTTGTCGATGTCCAGCTTT 59.450 45.455 0.98 0.00 30.93 3.51
4044 4597 3.122297 CCTCTCTTTCTAGCTGCAATCG 58.878 50.000 1.02 0.00 0.00 3.34
4111 4665 1.618837 TCTAGTGACTTGCCTGACCAC 59.381 52.381 0.00 0.00 0.00 4.16
4159 4713 2.816087 GGTGCTGAAGAAGATCAAAGCA 59.184 45.455 0.00 0.00 30.72 3.91
4162 4716 3.750130 TGCTGAAGAAGATCAAAGCAGAC 59.250 43.478 0.00 0.00 30.05 3.51
4215 4773 3.354645 AGCGCCGCGATCGATCTA 61.355 61.111 21.57 0.00 38.10 1.98
4236 4794 2.162319 TGTGCTTGCATACGTCTCAA 57.838 45.000 0.00 0.00 0.00 3.02
4237 4795 2.488952 TGTGCTTGCATACGTCTCAAA 58.511 42.857 0.00 0.00 0.00 2.69
4240 4798 4.092821 TGTGCTTGCATACGTCTCAAATAC 59.907 41.667 0.00 0.00 0.00 1.89
4284 4842 9.606631 GTCTTACATGTATCCATTCTTCTTCTT 57.393 33.333 6.36 0.00 0.00 2.52
4289 4847 8.762645 ACATGTATCCATTCTTCTTCTTCACTA 58.237 33.333 0.00 0.00 0.00 2.74
4307 4865 9.905713 TCTTCACTAAGAATAGCCACATAATTT 57.094 29.630 0.00 0.00 38.81 1.82
4319 4877 4.814234 GCCACATAATTTCTCGGATGTGTA 59.186 41.667 13.18 0.00 44.97 2.90
4320 4878 5.470098 GCCACATAATTTCTCGGATGTGTAT 59.530 40.000 13.18 0.00 44.97 2.29
4321 4879 6.566564 GCCACATAATTTCTCGGATGTGTATG 60.567 42.308 13.18 3.09 44.97 2.39
4322 4880 6.705825 CCACATAATTTCTCGGATGTGTATGA 59.294 38.462 13.18 0.00 44.97 2.15
4323 4881 7.307396 CCACATAATTTCTCGGATGTGTATGAC 60.307 40.741 13.18 0.00 44.97 3.06
4329 4896 8.964476 ATTTCTCGGATGTGTATGACTAAATT 57.036 30.769 0.00 0.00 0.00 1.82
4332 4899 9.529325 TTCTCGGATGTGTATGACTAAATTAAG 57.471 33.333 0.00 0.00 0.00 1.85
4333 4900 7.652105 TCTCGGATGTGTATGACTAAATTAAGC 59.348 37.037 0.00 0.00 0.00 3.09
4335 4902 8.635328 TCGGATGTGTATGACTAAATTAAGCTA 58.365 33.333 0.00 0.00 0.00 3.32
4355 4922 6.638610 AGCTATATTGAGATGTACTCCATGC 58.361 40.000 0.00 0.00 44.34 4.06
4356 4923 6.440010 AGCTATATTGAGATGTACTCCATGCT 59.560 38.462 0.00 0.00 44.34 3.79
4357 4924 7.038445 AGCTATATTGAGATGTACTCCATGCTT 60.038 37.037 0.00 0.00 44.34 3.91
4364 4936 7.168219 TGAGATGTACTCCATGCTTTTTAAGT 58.832 34.615 0.00 0.00 44.34 2.24
4366 4938 8.494016 AGATGTACTCCATGCTTTTTAAGTAC 57.506 34.615 0.00 0.00 39.51 2.73
4367 4939 8.322091 AGATGTACTCCATGCTTTTTAAGTACT 58.678 33.333 10.69 0.00 39.68 2.73
4377 4949 7.811117 TGCTTTTTAAGTACTAAGGCTTTCA 57.189 32.000 4.45 0.00 0.00 2.69
4380 4952 7.514784 TTTTTAAGTACTAAGGCTTTCACCC 57.485 36.000 4.45 0.00 0.00 4.61
4386 4958 2.019984 CTAAGGCTTTCACCCAGCATC 58.980 52.381 4.45 0.00 39.21 3.91
4405 5074 5.601313 AGCATCAAATTGATAATGCCCTTCT 59.399 36.000 14.27 0.00 44.34 2.85
4418 5087 9.780186 GATAATGCCCTTCTATTTACTAACAGT 57.220 33.333 0.00 0.00 0.00 3.55
4457 5126 3.711704 TCTGAACAAGACCAAAGAGAGGT 59.288 43.478 0.00 0.00 43.46 3.85
4495 5185 5.852282 TTCTAGCTGCAGACACATGTATA 57.148 39.130 20.43 0.00 0.00 1.47
4499 5189 7.275183 TCTAGCTGCAGACACATGTATAATTT 58.725 34.615 20.43 0.00 0.00 1.82
4500 5190 8.421002 TCTAGCTGCAGACACATGTATAATTTA 58.579 33.333 20.43 0.00 0.00 1.40
4501 5191 7.488187 AGCTGCAGACACATGTATAATTTAG 57.512 36.000 20.43 0.00 0.00 1.85
4503 5193 7.554118 AGCTGCAGACACATGTATAATTTAGTT 59.446 33.333 20.43 0.00 0.00 2.24
4504 5194 7.641411 GCTGCAGACACATGTATAATTTAGTTG 59.359 37.037 20.43 0.00 0.00 3.16
4505 5195 8.560355 TGCAGACACATGTATAATTTAGTTGT 57.440 30.769 0.00 0.00 0.00 3.32
4523 5213 1.271379 TGTAGGCGTGTACTGAACCAG 59.729 52.381 0.00 0.00 37.52 4.00
4527 5217 1.429463 GCGTGTACTGAACCAGGAAG 58.571 55.000 0.00 0.00 35.51 3.46
4528 5218 1.939838 GCGTGTACTGAACCAGGAAGG 60.940 57.143 0.00 0.00 45.67 3.46
4542 5232 3.765511 CCAGGAAGGCAAGATTGATTCAA 59.234 43.478 0.75 0.75 31.18 2.69
4546 5236 4.925646 GGAAGGCAAGATTGATTCAAACAC 59.074 41.667 2.68 0.00 31.18 3.32
4547 5237 4.525912 AGGCAAGATTGATTCAAACACC 57.474 40.909 2.68 4.57 0.00 4.16
4566 5258 1.538204 CCGTGAGTTATCATCCCGTGG 60.538 57.143 0.00 0.00 37.87 4.94
4571 5263 1.141053 AGTTATCATCCCGTGGCCTTC 59.859 52.381 3.32 0.00 0.00 3.46
4631 5326 3.966979 TGCCCATTCTATTTGCAGAGAA 58.033 40.909 9.42 9.42 36.18 2.87
4632 5327 3.949754 TGCCCATTCTATTTGCAGAGAAG 59.050 43.478 11.83 0.00 35.24 2.85
4634 5329 4.826183 GCCCATTCTATTTGCAGAGAAGAT 59.174 41.667 11.83 0.00 35.24 2.40
4635 5330 6.000219 GCCCATTCTATTTGCAGAGAAGATA 59.000 40.000 11.83 0.00 35.24 1.98
4636 5331 6.072783 GCCCATTCTATTTGCAGAGAAGATAC 60.073 42.308 11.83 1.82 35.24 2.24
4637 5332 6.994496 CCCATTCTATTTGCAGAGAAGATACA 59.006 38.462 11.83 0.00 35.24 2.29
4638 5333 7.500227 CCCATTCTATTTGCAGAGAAGATACAA 59.500 37.037 11.83 0.00 35.24 2.41
4639 5334 8.557864 CCATTCTATTTGCAGAGAAGATACAAG 58.442 37.037 11.83 0.00 35.24 3.16
4640 5335 9.107177 CATTCTATTTGCAGAGAAGATACAAGT 57.893 33.333 11.83 0.00 35.24 3.16
4641 5336 9.678260 ATTCTATTTGCAGAGAAGATACAAGTT 57.322 29.630 11.83 0.00 35.24 2.66
4642 5337 9.507329 TTCTATTTGCAGAGAAGATACAAGTTT 57.493 29.630 4.23 0.00 0.00 2.66
4643 5338 9.507329 TCTATTTGCAGAGAAGATACAAGTTTT 57.493 29.630 0.00 0.00 0.00 2.43
4644 5339 9.552114 CTATTTGCAGAGAAGATACAAGTTTTG 57.448 33.333 0.00 0.00 0.00 2.44
4645 5340 7.566760 TTTGCAGAGAAGATACAAGTTTTGA 57.433 32.000 0.00 0.00 0.00 2.69
4646 5341 7.566760 TTGCAGAGAAGATACAAGTTTTGAA 57.433 32.000 0.00 0.00 0.00 2.69
4647 5342 7.566760 TGCAGAGAAGATACAAGTTTTGAAA 57.433 32.000 0.00 0.00 0.00 2.69
4648 5343 7.642669 TGCAGAGAAGATACAAGTTTTGAAAG 58.357 34.615 0.00 0.00 0.00 2.62
4649 5344 7.283127 TGCAGAGAAGATACAAGTTTTGAAAGT 59.717 33.333 0.00 0.00 0.00 2.66
4650 5345 7.589221 GCAGAGAAGATACAAGTTTTGAAAGTG 59.411 37.037 0.00 0.00 0.00 3.16
4651 5346 7.589221 CAGAGAAGATACAAGTTTTGAAAGTGC 59.411 37.037 0.00 0.00 0.00 4.40
4652 5347 7.283127 AGAGAAGATACAAGTTTTGAAAGTGCA 59.717 33.333 0.00 0.00 0.00 4.57
4653 5348 7.420800 AGAAGATACAAGTTTTGAAAGTGCAG 58.579 34.615 0.00 0.00 0.00 4.41
4654 5349 6.942532 AGATACAAGTTTTGAAAGTGCAGA 57.057 33.333 0.00 0.00 0.00 4.26
4655 5350 7.333528 AGATACAAGTTTTGAAAGTGCAGAA 57.666 32.000 0.00 0.00 0.00 3.02
4656 5351 7.420800 AGATACAAGTTTTGAAAGTGCAGAAG 58.579 34.615 0.00 0.00 0.00 2.85
4657 5352 4.176271 ACAAGTTTTGAAAGTGCAGAAGC 58.824 39.130 0.00 0.00 42.57 3.86
4658 5353 4.082026 ACAAGTTTTGAAAGTGCAGAAGCT 60.082 37.500 0.00 0.00 42.74 3.74
4659 5354 4.037858 AGTTTTGAAAGTGCAGAAGCTG 57.962 40.909 0.00 0.00 42.74 4.24
4660 5355 3.696051 AGTTTTGAAAGTGCAGAAGCTGA 59.304 39.130 0.00 0.00 42.74 4.26
4661 5356 3.698029 TTTGAAAGTGCAGAAGCTGAC 57.302 42.857 0.00 0.00 42.74 3.51
4662 5357 1.597742 TGAAAGTGCAGAAGCTGACC 58.402 50.000 0.00 0.00 42.74 4.02
4663 5358 0.877743 GAAAGTGCAGAAGCTGACCC 59.122 55.000 0.00 0.00 42.74 4.46
4664 5359 0.886490 AAAGTGCAGAAGCTGACCCG 60.886 55.000 0.00 0.00 42.74 5.28
4665 5360 1.758440 AAGTGCAGAAGCTGACCCGA 61.758 55.000 0.00 0.00 42.74 5.14
4666 5361 1.301716 GTGCAGAAGCTGACCCGAA 60.302 57.895 0.00 0.00 42.74 4.30
4667 5362 1.004560 TGCAGAAGCTGACCCGAAG 60.005 57.895 0.00 0.00 42.74 3.79
4668 5363 1.743252 GCAGAAGCTGACCCGAAGG 60.743 63.158 0.00 0.00 43.31 3.46
4669 5364 1.743252 CAGAAGCTGACCCGAAGGC 60.743 63.158 0.00 0.00 39.46 4.35
4681 5376 2.183478 CCGAAGGCCATATACATGCA 57.817 50.000 5.01 0.00 46.14 3.96
4682 5377 2.079158 CCGAAGGCCATATACATGCAG 58.921 52.381 5.01 0.00 46.14 4.41
4683 5378 2.079158 CGAAGGCCATATACATGCAGG 58.921 52.381 5.01 0.00 0.00 4.85
4684 5379 2.289631 CGAAGGCCATATACATGCAGGA 60.290 50.000 4.84 0.00 0.00 3.86
4685 5380 3.341823 GAAGGCCATATACATGCAGGAG 58.658 50.000 4.84 0.00 0.00 3.69
4686 5381 1.004044 AGGCCATATACATGCAGGAGC 59.996 52.381 4.84 0.00 42.57 4.70
4696 5391 4.511636 GCAGGAGCAGCAGAGTAC 57.488 61.111 0.00 0.00 41.58 2.73
4697 5392 1.896694 GCAGGAGCAGCAGAGTACT 59.103 57.895 0.00 0.00 41.58 2.73
4698 5393 0.248843 GCAGGAGCAGCAGAGTACTT 59.751 55.000 0.00 0.00 41.58 2.24
4699 5394 1.478510 GCAGGAGCAGCAGAGTACTTA 59.521 52.381 0.00 0.00 41.58 2.24
4700 5395 2.481104 GCAGGAGCAGCAGAGTACTTAG 60.481 54.545 0.00 0.00 41.58 2.18
4701 5396 1.754226 AGGAGCAGCAGAGTACTTAGC 59.246 52.381 11.33 11.33 0.00 3.09
4702 5397 1.202475 GGAGCAGCAGAGTACTTAGCC 60.202 57.143 14.58 3.64 0.00 3.93
4703 5398 1.754226 GAGCAGCAGAGTACTTAGCCT 59.246 52.381 14.58 7.60 0.00 4.58
4704 5399 2.952978 GAGCAGCAGAGTACTTAGCCTA 59.047 50.000 14.58 0.00 0.00 3.93
4705 5400 2.955660 AGCAGCAGAGTACTTAGCCTAG 59.044 50.000 14.58 8.21 0.00 3.02
4706 5401 2.952978 GCAGCAGAGTACTTAGCCTAGA 59.047 50.000 14.58 0.00 0.00 2.43
4707 5402 3.572255 GCAGCAGAGTACTTAGCCTAGAT 59.428 47.826 14.58 0.00 0.00 1.98
4708 5403 4.320935 GCAGCAGAGTACTTAGCCTAGATC 60.321 50.000 14.58 0.00 0.00 2.75
4709 5404 4.824537 CAGCAGAGTACTTAGCCTAGATCA 59.175 45.833 14.58 0.00 0.00 2.92
4710 5405 5.476599 CAGCAGAGTACTTAGCCTAGATCAT 59.523 44.000 14.58 0.00 0.00 2.45
4711 5406 5.710099 AGCAGAGTACTTAGCCTAGATCATC 59.290 44.000 14.58 0.00 0.00 2.92
4712 5407 5.475220 GCAGAGTACTTAGCCTAGATCATCA 59.525 44.000 0.00 0.00 0.00 3.07
4713 5408 6.569610 GCAGAGTACTTAGCCTAGATCATCAC 60.570 46.154 0.00 0.00 0.00 3.06
4714 5409 6.714810 CAGAGTACTTAGCCTAGATCATCACT 59.285 42.308 0.00 0.00 0.00 3.41
4715 5410 7.880713 CAGAGTACTTAGCCTAGATCATCACTA 59.119 40.741 0.00 0.00 0.00 2.74
4716 5411 8.611257 AGAGTACTTAGCCTAGATCATCACTAT 58.389 37.037 0.00 0.00 0.00 2.12
4717 5412 8.801882 AGTACTTAGCCTAGATCATCACTATC 57.198 38.462 0.00 0.00 0.00 2.08
4718 5413 8.387039 AGTACTTAGCCTAGATCATCACTATCA 58.613 37.037 0.00 0.00 0.00 2.15
4719 5414 9.184523 GTACTTAGCCTAGATCATCACTATCAT 57.815 37.037 0.00 0.00 0.00 2.45
4720 5415 8.663209 ACTTAGCCTAGATCATCACTATCATT 57.337 34.615 0.00 0.00 0.00 2.57
4721 5416 8.530311 ACTTAGCCTAGATCATCACTATCATTG 58.470 37.037 0.00 0.00 0.00 2.82
4722 5417 6.931790 AGCCTAGATCATCACTATCATTGT 57.068 37.500 0.00 0.00 0.00 2.71
4723 5418 7.313740 AGCCTAGATCATCACTATCATTGTT 57.686 36.000 0.00 0.00 0.00 2.83
4724 5419 8.427902 AGCCTAGATCATCACTATCATTGTTA 57.572 34.615 0.00 0.00 0.00 2.41
4725 5420 8.530311 AGCCTAGATCATCACTATCATTGTTAG 58.470 37.037 0.00 1.06 0.00 2.34
4726 5421 7.277539 GCCTAGATCATCACTATCATTGTTAGC 59.722 40.741 0.00 0.00 0.00 3.09
4727 5422 8.309656 CCTAGATCATCACTATCATTGTTAGCA 58.690 37.037 0.00 0.00 0.00 3.49
4728 5423 9.356433 CTAGATCATCACTATCATTGTTAGCAG 57.644 37.037 0.00 0.00 0.00 4.24
4729 5424 6.649973 AGATCATCACTATCATTGTTAGCAGC 59.350 38.462 0.00 0.00 0.00 5.25
4730 5425 5.673514 TCATCACTATCATTGTTAGCAGCA 58.326 37.500 0.00 0.00 0.00 4.41
4731 5426 5.756833 TCATCACTATCATTGTTAGCAGCAG 59.243 40.000 0.00 0.00 0.00 4.24
4732 5427 5.343307 TCACTATCATTGTTAGCAGCAGA 57.657 39.130 0.00 0.00 0.00 4.26
4733 5428 5.354767 TCACTATCATTGTTAGCAGCAGAG 58.645 41.667 0.00 0.00 0.00 3.35
4734 5429 5.105187 TCACTATCATTGTTAGCAGCAGAGT 60.105 40.000 0.00 0.00 0.00 3.24
4735 5430 6.096846 TCACTATCATTGTTAGCAGCAGAGTA 59.903 38.462 0.00 0.00 0.00 2.59
4736 5431 6.199908 CACTATCATTGTTAGCAGCAGAGTAC 59.800 42.308 0.00 0.00 0.00 2.73
4737 5432 4.808414 TCATTGTTAGCAGCAGAGTACT 57.192 40.909 0.00 0.00 0.00 2.73
4738 5433 4.748892 TCATTGTTAGCAGCAGAGTACTC 58.251 43.478 15.41 15.41 0.00 2.59
4739 5434 4.220602 TCATTGTTAGCAGCAGAGTACTCA 59.779 41.667 24.44 0.00 0.00 3.41
4740 5435 3.577649 TGTTAGCAGCAGAGTACTCAC 57.422 47.619 24.44 15.62 0.00 3.51
4741 5436 2.095212 TGTTAGCAGCAGAGTACTCACG 60.095 50.000 24.44 15.59 0.00 4.35
4742 5437 0.452184 TAGCAGCAGAGTACTCACGC 59.548 55.000 24.44 23.60 0.00 5.34
4743 5438 1.214062 GCAGCAGAGTACTCACGCT 59.786 57.895 25.86 25.86 39.97 5.07
4744 5439 0.389166 GCAGCAGAGTACTCACGCTT 60.389 55.000 27.88 15.82 38.16 4.68
4745 5440 1.623359 CAGCAGAGTACTCACGCTTC 58.377 55.000 27.88 10.93 38.16 3.86
4746 5441 0.528470 AGCAGAGTACTCACGCTTCC 59.472 55.000 25.86 8.11 37.33 3.46
4747 5442 0.458716 GCAGAGTACTCACGCTTCCC 60.459 60.000 24.44 0.00 31.76 3.97
4748 5443 1.178276 CAGAGTACTCACGCTTCCCT 58.822 55.000 24.44 0.00 31.76 4.20
4749 5444 1.135257 CAGAGTACTCACGCTTCCCTG 60.135 57.143 24.44 7.08 31.76 4.45
4750 5445 0.889306 GAGTACTCACGCTTCCCTGT 59.111 55.000 18.20 0.00 0.00 4.00
4751 5446 1.272769 GAGTACTCACGCTTCCCTGTT 59.727 52.381 18.20 0.00 0.00 3.16
4752 5447 1.000955 AGTACTCACGCTTCCCTGTTG 59.999 52.381 0.00 0.00 0.00 3.33
4753 5448 1.045407 TACTCACGCTTCCCTGTTGT 58.955 50.000 0.00 0.00 0.00 3.32
4754 5449 0.180406 ACTCACGCTTCCCTGTTGTT 59.820 50.000 0.00 0.00 0.00 2.83
4755 5450 1.414919 ACTCACGCTTCCCTGTTGTTA 59.585 47.619 0.00 0.00 0.00 2.41
4756 5451 2.038557 ACTCACGCTTCCCTGTTGTTAT 59.961 45.455 0.00 0.00 0.00 1.89
4757 5452 2.416547 CTCACGCTTCCCTGTTGTTATG 59.583 50.000 0.00 0.00 0.00 1.90
4758 5453 1.468520 CACGCTTCCCTGTTGTTATGG 59.531 52.381 0.00 0.00 0.00 2.74
4759 5454 0.451783 CGCTTCCCTGTTGTTATGGC 59.548 55.000 0.00 0.00 0.00 4.40
4760 5455 1.839424 GCTTCCCTGTTGTTATGGCT 58.161 50.000 0.00 0.00 0.00 4.75
4761 5456 1.474077 GCTTCCCTGTTGTTATGGCTG 59.526 52.381 0.00 0.00 0.00 4.85
4762 5457 1.474077 CTTCCCTGTTGTTATGGCTGC 59.526 52.381 0.00 0.00 0.00 5.25
4763 5458 0.323360 TCCCTGTTGTTATGGCTGCC 60.323 55.000 12.87 12.87 0.00 4.85
4764 5459 1.322538 CCCTGTTGTTATGGCTGCCC 61.323 60.000 17.53 0.31 0.00 5.36
4765 5460 1.322538 CCTGTTGTTATGGCTGCCCC 61.323 60.000 17.53 1.94 0.00 5.80
4784 5479 3.271250 AGCCCAGCTGGTTGTTATG 57.729 52.632 30.63 14.78 37.57 1.90
4785 5480 0.405585 AGCCCAGCTGGTTGTTATGT 59.594 50.000 30.63 3.47 37.57 2.29
4786 5481 1.203050 AGCCCAGCTGGTTGTTATGTT 60.203 47.619 30.63 9.17 37.57 2.71
4787 5482 1.202348 GCCCAGCTGGTTGTTATGTTC 59.798 52.381 30.63 3.49 36.04 3.18
4788 5483 2.513753 CCCAGCTGGTTGTTATGTTCA 58.486 47.619 30.63 0.00 0.00 3.18
4789 5484 2.228822 CCCAGCTGGTTGTTATGTTCAC 59.771 50.000 30.63 0.00 0.00 3.18
4790 5485 2.095768 CCAGCTGGTTGTTATGTTCACG 60.096 50.000 25.53 0.00 0.00 4.35
4791 5486 2.548057 CAGCTGGTTGTTATGTTCACGT 59.452 45.455 5.57 0.00 0.00 4.49
4792 5487 2.548057 AGCTGGTTGTTATGTTCACGTG 59.452 45.455 9.94 9.94 0.00 4.49
4793 5488 2.289547 GCTGGTTGTTATGTTCACGTGT 59.710 45.455 16.51 0.00 0.00 4.49
4794 5489 3.495377 GCTGGTTGTTATGTTCACGTGTA 59.505 43.478 16.51 2.27 0.00 2.90
4795 5490 4.377022 GCTGGTTGTTATGTTCACGTGTAG 60.377 45.833 16.51 0.00 0.00 2.74
4796 5491 4.695396 TGGTTGTTATGTTCACGTGTAGT 58.305 39.130 16.51 3.24 0.00 2.73
4797 5492 5.840715 TGGTTGTTATGTTCACGTGTAGTA 58.159 37.500 16.51 1.21 0.00 1.82
4798 5493 6.457355 TGGTTGTTATGTTCACGTGTAGTAT 58.543 36.000 16.51 8.72 0.00 2.12
4799 5494 6.366604 TGGTTGTTATGTTCACGTGTAGTATG 59.633 38.462 16.51 0.00 0.00 2.39
4800 5495 6.183360 GGTTGTTATGTTCACGTGTAGTATGG 60.183 42.308 16.51 0.00 0.00 2.74
4801 5496 4.865925 TGTTATGTTCACGTGTAGTATGGC 59.134 41.667 16.51 2.27 0.00 4.40
4802 5497 3.603158 ATGTTCACGTGTAGTATGGCA 57.397 42.857 16.51 0.00 0.00 4.92
4803 5498 2.679450 TGTTCACGTGTAGTATGGCAC 58.321 47.619 16.51 0.87 0.00 5.01
4821 5516 6.939132 TGGCACAAAACAATTCAATCAATT 57.061 29.167 0.00 0.00 31.83 2.32
4823 5518 8.442632 TGGCACAAAACAATTCAATCAATTAA 57.557 26.923 0.00 0.00 30.82 1.40
4824 5519 8.341173 TGGCACAAAACAATTCAATCAATTAAC 58.659 29.630 0.00 0.00 30.82 2.01
4825 5520 7.802720 GGCACAAAACAATTCAATCAATTAACC 59.197 33.333 0.00 0.00 32.48 2.85
4826 5521 7.802720 GCACAAAACAATTCAATCAATTAACCC 59.197 33.333 0.00 0.00 32.48 4.11
4827 5522 8.834465 CACAAAACAATTCAATCAATTAACCCA 58.166 29.630 0.00 0.00 32.48 4.51
4828 5523 9.571816 ACAAAACAATTCAATCAATTAACCCAT 57.428 25.926 0.00 0.00 32.48 4.00
4839 5534 9.942850 CAATCAATTAACCCATATAATTTCCCC 57.057 33.333 0.00 0.00 32.15 4.81
4840 5535 9.912461 AATCAATTAACCCATATAATTTCCCCT 57.088 29.630 0.00 0.00 32.15 4.79
4912 5607 8.896320 TTACTAGTTGTGCTATTTCTTTGACA 57.104 30.769 0.00 0.00 0.00 3.58
4913 5608 7.801716 ACTAGTTGTGCTATTTCTTTGACAA 57.198 32.000 0.00 0.00 0.00 3.18
4914 5609 8.220755 ACTAGTTGTGCTATTTCTTTGACAAA 57.779 30.769 0.00 0.00 0.00 2.83
4915 5610 8.682710 ACTAGTTGTGCTATTTCTTTGACAAAA 58.317 29.630 1.62 0.00 0.00 2.44
4916 5611 9.683069 CTAGTTGTGCTATTTCTTTGACAAAAT 57.317 29.630 1.62 0.00 0.00 1.82
4918 5613 9.463443 AGTTGTGCTATTTCTTTGACAAAATAC 57.537 29.630 1.62 0.00 0.00 1.89
4919 5614 9.463443 GTTGTGCTATTTCTTTGACAAAATACT 57.537 29.630 1.62 0.00 0.00 2.12
4927 5622 8.850454 TTTCTTTGACAAAATACTAGTTGTGC 57.150 30.769 0.00 0.00 38.07 4.57
4928 5623 7.801716 TCTTTGACAAAATACTAGTTGTGCT 57.198 32.000 0.00 0.00 38.07 4.40
4929 5624 8.896320 TCTTTGACAAAATACTAGTTGTGCTA 57.104 30.769 0.00 0.00 38.07 3.49
4930 5625 9.502091 TCTTTGACAAAATACTAGTTGTGCTAT 57.498 29.630 0.00 0.00 38.07 2.97
4934 5629 9.502091 TGACAAAATACTAGTTGTGCTATTTCT 57.498 29.630 0.00 0.00 38.07 2.52
4961 5656 6.959639 AAAATACTTGCCACTGAGAAAAGA 57.040 33.333 0.00 0.00 0.00 2.52
4962 5657 6.959639 AAATACTTGCCACTGAGAAAAGAA 57.040 33.333 0.00 0.00 0.00 2.52
4963 5658 6.566197 AATACTTGCCACTGAGAAAAGAAG 57.434 37.500 0.00 0.00 0.00 2.85
4964 5659 2.620585 ACTTGCCACTGAGAAAAGAAGC 59.379 45.455 0.00 0.00 0.00 3.86
4965 5660 1.229428 TGCCACTGAGAAAAGAAGCG 58.771 50.000 0.00 0.00 0.00 4.68
4966 5661 1.230324 GCCACTGAGAAAAGAAGCGT 58.770 50.000 0.00 0.00 0.00 5.07
4967 5662 2.224185 TGCCACTGAGAAAAGAAGCGTA 60.224 45.455 0.00 0.00 0.00 4.42
4968 5663 2.413453 GCCACTGAGAAAAGAAGCGTAG 59.587 50.000 0.00 0.00 0.00 3.51
4969 5664 2.996621 CCACTGAGAAAAGAAGCGTAGG 59.003 50.000 0.00 0.00 0.00 3.18
4970 5665 2.413453 CACTGAGAAAAGAAGCGTAGGC 59.587 50.000 0.00 0.00 40.37 3.93
4971 5666 1.656095 CTGAGAAAAGAAGCGTAGGCG 59.344 52.381 1.05 0.00 46.35 5.52
4972 5667 1.000506 TGAGAAAAGAAGCGTAGGCGT 59.999 47.619 1.05 0.00 46.35 5.68
4973 5668 1.654602 GAGAAAAGAAGCGTAGGCGTC 59.345 52.381 14.35 14.35 46.34 5.19
4978 5673 3.940723 GAAGCGTAGGCGTCAGTAT 57.059 52.632 16.75 0.00 45.46 2.12
4980 5675 3.344904 GAAGCGTAGGCGTCAGTATAA 57.655 47.619 16.75 0.00 45.46 0.98
4981 5676 3.699067 GAAGCGTAGGCGTCAGTATAAA 58.301 45.455 16.75 0.00 45.46 1.40
4982 5677 3.788333 AGCGTAGGCGTCAGTATAAAA 57.212 42.857 1.05 0.00 46.35 1.52
4983 5678 3.442100 AGCGTAGGCGTCAGTATAAAAC 58.558 45.455 1.05 0.00 46.35 2.43
4984 5679 3.129988 AGCGTAGGCGTCAGTATAAAACT 59.870 43.478 1.05 0.00 46.35 2.66
4985 5680 4.336433 AGCGTAGGCGTCAGTATAAAACTA 59.664 41.667 1.05 0.00 46.35 2.24
4986 5681 4.439123 GCGTAGGCGTCAGTATAAAACTAC 59.561 45.833 0.00 0.00 37.24 2.73
4987 5682 4.972440 CGTAGGCGTCAGTATAAAACTACC 59.028 45.833 0.00 0.00 35.76 3.18
4988 5683 5.449041 CGTAGGCGTCAGTATAAAACTACCA 60.449 44.000 0.00 0.00 35.76 3.25
4989 5684 4.752146 AGGCGTCAGTATAAAACTACCAC 58.248 43.478 0.00 0.00 35.76 4.16
4990 5685 3.549070 GGCGTCAGTATAAAACTACCACG 59.451 47.826 0.00 0.00 35.76 4.94
4991 5686 4.168760 GCGTCAGTATAAAACTACCACGT 58.831 43.478 0.00 0.00 37.30 4.49
4992 5687 5.331902 GCGTCAGTATAAAACTACCACGTA 58.668 41.667 0.00 0.00 37.30 3.57
4993 5688 5.453587 GCGTCAGTATAAAACTACCACGTAG 59.546 44.000 0.00 0.00 41.43 3.51
4994 5689 5.453587 CGTCAGTATAAAACTACCACGTAGC 59.546 44.000 0.00 0.00 39.51 3.58
4995 5690 5.745769 GTCAGTATAAAACTACCACGTAGCC 59.254 44.000 0.00 0.00 39.51 3.93
4996 5691 5.418524 TCAGTATAAAACTACCACGTAGCCA 59.581 40.000 0.00 0.00 39.51 4.75
4997 5692 6.097270 TCAGTATAAAACTACCACGTAGCCAT 59.903 38.462 0.00 0.00 39.51 4.40
4998 5693 6.420008 CAGTATAAAACTACCACGTAGCCATC 59.580 42.308 0.00 0.00 39.51 3.51
4999 5694 2.685850 AAACTACCACGTAGCCATCC 57.314 50.000 0.00 0.00 39.51 3.51
5000 5695 1.861982 AACTACCACGTAGCCATCCT 58.138 50.000 0.00 0.00 39.51 3.24
5001 5696 1.861982 ACTACCACGTAGCCATCCTT 58.138 50.000 0.00 0.00 39.51 3.36
5002 5697 1.755380 ACTACCACGTAGCCATCCTTC 59.245 52.381 0.00 0.00 39.51 3.46
5003 5698 2.032620 CTACCACGTAGCCATCCTTCT 58.967 52.381 0.00 0.00 29.12 2.85
5004 5699 1.276622 ACCACGTAGCCATCCTTCTT 58.723 50.000 0.00 0.00 0.00 2.52
5005 5700 1.628846 ACCACGTAGCCATCCTTCTTT 59.371 47.619 0.00 0.00 0.00 2.52
5006 5701 2.039879 ACCACGTAGCCATCCTTCTTTT 59.960 45.455 0.00 0.00 0.00 2.27
5181 5888 1.863155 ATGAAATGCGGGACCCACCT 61.863 55.000 12.15 0.00 38.98 4.00
5290 6032 5.955355 CCTTCTTCCTCCTTCTCTCTCTTTA 59.045 44.000 0.00 0.00 0.00 1.85
5319 6061 5.712004 TCAACAAACATCTTATGTGCATGG 58.288 37.500 0.00 0.00 44.07 3.66
5322 6065 4.957954 ACAAACATCTTATGTGCATGGGAT 59.042 37.500 0.00 0.00 44.07 3.85
5342 6085 0.034896 GAAAGCAGGTGAACTCCGGA 59.965 55.000 2.93 2.93 0.00 5.14
5505 6274 4.415150 CCATGGCGTCCCTGTGCT 62.415 66.667 0.00 0.00 0.00 4.40
5530 6300 0.895530 CCCTGCCTCGACAGAAACTA 59.104 55.000 4.68 0.00 40.25 2.24
5583 6353 3.052082 GCTTCTTCGCTGCTGCCA 61.052 61.111 10.24 0.00 35.36 4.92
5599 6369 2.115910 CACTGCTTTGGGCCTCCA 59.884 61.111 4.53 0.00 42.25 3.86
5607 6377 3.873679 TTGGGCCTCCAGCTGCAAG 62.874 63.158 8.66 7.79 45.04 4.01
5613 6383 3.855503 CTCCAGCTGCAAGGCACCA 62.856 63.158 8.66 0.00 33.79 4.17
5614 6384 2.913578 CCAGCTGCAAGGCACCAA 60.914 61.111 8.66 0.00 33.79 3.67
5799 9754 3.744719 CCGCTGCATGCTGCTGTT 61.745 61.111 36.37 0.00 45.31 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 4.450080 GCTTGCATTTCTTCTTCCCTTTTG 59.550 41.667 0.00 0.00 0.00 2.44
75 77 3.181492 GCTAGCTTGCATTTCTTCTTCCC 60.181 47.826 15.53 0.00 0.00 3.97
117 119 0.516877 TGCTGATTTTCTCGTTGCGG 59.483 50.000 0.00 0.00 0.00 5.69
206 216 0.894835 TCGTTGACCATCTAGCAGCA 59.105 50.000 0.00 0.00 0.00 4.41
208 218 4.687948 CCATATTCGTTGACCATCTAGCAG 59.312 45.833 0.00 0.00 0.00 4.24
209 219 4.343814 TCCATATTCGTTGACCATCTAGCA 59.656 41.667 0.00 0.00 0.00 3.49
289 300 5.813672 TGTTGCACTTACTTCTTTCTTACGT 59.186 36.000 0.00 0.00 0.00 3.57
295 306 3.883489 AGGGTGTTGCACTTACTTCTTTC 59.117 43.478 0.00 0.00 34.40 2.62
348 360 1.923227 TAGACTCTCTGCACGTGCCG 61.923 60.000 35.72 29.87 41.18 5.69
763 1224 0.921896 ATTGAGCTGGGGTGCATACT 59.078 50.000 0.00 0.00 34.99 2.12
857 1318 3.586543 TGCCATTGGTGGGAGTGA 58.413 55.556 4.26 0.00 46.14 3.41
878 1342 1.197949 CGGCGAGATCGATGTCACTAT 59.802 52.381 21.08 0.00 43.02 2.12
919 1383 3.138798 GTCAGGGTCGGCGAGCTA 61.139 66.667 34.02 19.44 0.00 3.32
1024 1488 0.833287 ATGCCCTGCAACGATAGAGT 59.167 50.000 0.00 0.00 43.62 3.24
1273 1737 7.698163 ACAATAACATCTTAGGAGGGATCTT 57.302 36.000 0.00 0.00 0.00 2.40
1460 1924 8.691661 TGATTAAACTCAAGGCTAAAGAACTT 57.308 30.769 3.31 0.00 0.00 2.66
1493 1957 2.452116 TGGCTTGTGGCACTAGACT 58.548 52.632 30.06 0.00 44.10 3.24
1677 2142 5.064071 GCAGAAGAATCAAGTACTTGTAGGC 59.936 44.000 29.83 19.61 41.16 3.93
1810 2275 8.378565 TCTATTCTTGAAAGACTGGTGAGATTT 58.621 33.333 0.00 0.00 34.13 2.17
2071 2537 7.419634 GGCTGATAAGAAGTCTAGATTTCCCTT 60.420 40.741 20.80 13.63 0.00 3.95
2505 2978 5.573146 GCAGGTATCATTGAACTTAACTGC 58.427 41.667 16.11 16.11 45.09 4.40
3027 3514 2.224314 GCCAAAAGCTAGTGTGAGTGTC 59.776 50.000 0.00 0.00 38.99 3.67
3340 3832 2.301870 TCTTTATGAGGTTGCGGTGTCT 59.698 45.455 0.00 0.00 0.00 3.41
4013 4563 4.466726 GCTAGAAAGAGAGGAACCCTGTAA 59.533 45.833 0.00 0.00 31.76 2.41
4044 4597 0.243636 CGCAAGAAAACCACCATCCC 59.756 55.000 0.00 0.00 43.02 3.85
4111 4665 2.223377 CACATCATGCATCGTCATCCTG 59.777 50.000 0.00 0.00 0.00 3.86
4201 4758 0.710567 CACATTAGATCGATCGCGGC 59.289 55.000 19.33 1.72 38.28 6.53
4203 4760 1.691127 AGCACATTAGATCGATCGCG 58.309 50.000 19.33 0.00 39.35 5.87
4205 4762 2.796593 TGCAAGCACATTAGATCGATCG 59.203 45.455 19.33 9.36 0.00 3.69
4215 4773 2.698803 TGAGACGTATGCAAGCACATT 58.301 42.857 0.00 0.00 0.00 2.71
4284 4842 9.547753 GAGAAATTATGTGGCTATTCTTAGTGA 57.452 33.333 0.00 0.00 0.00 3.41
4289 4847 6.591935 TCCGAGAAATTATGTGGCTATTCTT 58.408 36.000 0.00 0.00 0.00 2.52
4305 4863 9.878667 TTAATTTAGTCATACACATCCGAGAAA 57.121 29.630 0.00 0.00 0.00 2.52
4307 4865 7.652105 GCTTAATTTAGTCATACACATCCGAGA 59.348 37.037 0.00 0.00 0.00 4.04
4329 4896 8.253810 GCATGGAGTACATCTCAATATAGCTTA 58.746 37.037 0.00 0.00 44.40 3.09
4332 4899 6.638610 AGCATGGAGTACATCTCAATATAGC 58.361 40.000 0.00 0.00 44.40 2.97
4333 4900 9.499479 AAAAGCATGGAGTACATCTCAATATAG 57.501 33.333 0.00 0.00 44.40 1.31
4335 4902 8.757982 AAAAAGCATGGAGTACATCTCAATAT 57.242 30.769 0.00 0.00 44.40 1.28
4341 4908 8.322091 AGTACTTAAAAAGCATGGAGTACATCT 58.678 33.333 12.33 0.00 40.98 2.90
4350 4917 6.759497 AGCCTTAGTACTTAAAAAGCATGG 57.241 37.500 0.00 0.00 0.00 3.66
4351 4918 8.296713 TGAAAGCCTTAGTACTTAAAAAGCATG 58.703 33.333 0.00 0.00 0.00 4.06
4352 4919 8.297426 GTGAAAGCCTTAGTACTTAAAAAGCAT 58.703 33.333 0.00 0.00 0.00 3.79
4353 4920 7.255346 GGTGAAAGCCTTAGTACTTAAAAAGCA 60.255 37.037 0.00 0.00 0.00 3.91
4354 4921 7.082602 GGTGAAAGCCTTAGTACTTAAAAAGC 58.917 38.462 0.00 0.00 0.00 3.51
4377 4949 4.202284 GGCATTATCAATTTGATGCTGGGT 60.202 41.667 19.81 0.00 43.26 4.51
4380 4952 5.209818 AGGGCATTATCAATTTGATGCTG 57.790 39.130 19.81 16.55 43.26 4.41
4405 5074 5.410355 AAGGGTGCGACTGTTAGTAAATA 57.590 39.130 0.00 0.00 0.00 1.40
4418 5087 2.038426 TCAGATTTGAGAAAGGGTGCGA 59.962 45.455 0.00 0.00 0.00 5.10
4457 5126 4.528596 AGCTAGAAACAGAGAAGCCTTGTA 59.471 41.667 0.00 0.00 33.63 2.41
4495 5185 5.786311 TCAGTACACGCCTACAACTAAATT 58.214 37.500 0.00 0.00 0.00 1.82
4499 5189 3.057315 GGTTCAGTACACGCCTACAACTA 60.057 47.826 0.00 0.00 0.00 2.24
4500 5190 2.288640 GGTTCAGTACACGCCTACAACT 60.289 50.000 0.00 0.00 0.00 3.16
4501 5191 2.064014 GGTTCAGTACACGCCTACAAC 58.936 52.381 0.00 0.00 0.00 3.32
4503 5193 1.271379 CTGGTTCAGTACACGCCTACA 59.729 52.381 0.00 0.00 0.00 2.74
4504 5194 1.403780 CCTGGTTCAGTACACGCCTAC 60.404 57.143 0.00 0.00 0.00 3.18
4505 5195 0.892755 CCTGGTTCAGTACACGCCTA 59.107 55.000 0.00 0.00 0.00 3.93
4523 5213 4.925646 GTGTTTGAATCAATCTTGCCTTCC 59.074 41.667 0.00 0.00 0.00 3.46
4527 5217 3.244976 CGGTGTTTGAATCAATCTTGCC 58.755 45.455 0.00 0.68 0.00 4.52
4528 5218 3.670055 CACGGTGTTTGAATCAATCTTGC 59.330 43.478 0.00 0.00 0.00 4.01
4542 5232 2.418197 CGGGATGATAACTCACGGTGTT 60.418 50.000 8.17 0.00 35.91 3.32
4546 5236 1.538204 CCACGGGATGATAACTCACGG 60.538 57.143 0.00 0.00 43.72 4.94
4547 5237 1.852942 CCACGGGATGATAACTCACG 58.147 55.000 0.00 0.00 44.93 4.35
4590 5285 1.308069 GCGCTCCTGCCTTTCATTCA 61.308 55.000 0.00 0.00 35.36 2.57
4591 5286 1.028868 AGCGCTCCTGCCTTTCATTC 61.029 55.000 2.64 0.00 35.36 2.67
4631 5326 6.942532 TCTGCACTTTCAAAACTTGTATCT 57.057 33.333 0.00 0.00 0.00 1.98
4632 5327 6.142958 GCTTCTGCACTTTCAAAACTTGTATC 59.857 38.462 0.00 0.00 39.41 2.24
4634 5329 5.125417 AGCTTCTGCACTTTCAAAACTTGTA 59.875 36.000 0.00 0.00 42.74 2.41
4635 5330 4.082026 AGCTTCTGCACTTTCAAAACTTGT 60.082 37.500 0.00 0.00 42.74 3.16
4636 5331 4.266976 CAGCTTCTGCACTTTCAAAACTTG 59.733 41.667 0.00 0.00 42.74 3.16
4637 5332 4.158394 TCAGCTTCTGCACTTTCAAAACTT 59.842 37.500 0.00 0.00 42.74 2.66
4638 5333 3.696051 TCAGCTTCTGCACTTTCAAAACT 59.304 39.130 0.00 0.00 42.74 2.66
4639 5334 3.793492 GTCAGCTTCTGCACTTTCAAAAC 59.207 43.478 0.00 0.00 42.74 2.43
4640 5335 3.181487 GGTCAGCTTCTGCACTTTCAAAA 60.181 43.478 0.00 0.00 42.74 2.44
4641 5336 2.358898 GGTCAGCTTCTGCACTTTCAAA 59.641 45.455 0.00 0.00 42.74 2.69
4642 5337 1.949525 GGTCAGCTTCTGCACTTTCAA 59.050 47.619 0.00 0.00 42.74 2.69
4643 5338 1.597742 GGTCAGCTTCTGCACTTTCA 58.402 50.000 0.00 0.00 42.74 2.69
4644 5339 0.877743 GGGTCAGCTTCTGCACTTTC 59.122 55.000 0.00 0.00 42.74 2.62
4645 5340 0.886490 CGGGTCAGCTTCTGCACTTT 60.886 55.000 0.00 0.00 42.74 2.66
4646 5341 1.302033 CGGGTCAGCTTCTGCACTT 60.302 57.895 0.00 0.00 42.74 3.16
4647 5342 1.758440 TTCGGGTCAGCTTCTGCACT 61.758 55.000 0.00 0.00 42.74 4.40
4648 5343 1.294659 CTTCGGGTCAGCTTCTGCAC 61.295 60.000 0.00 0.00 42.74 4.57
4649 5344 1.004560 CTTCGGGTCAGCTTCTGCA 60.005 57.895 0.00 0.00 42.74 4.41
4650 5345 1.743252 CCTTCGGGTCAGCTTCTGC 60.743 63.158 0.00 0.00 40.05 4.26
4651 5346 1.743252 GCCTTCGGGTCAGCTTCTG 60.743 63.158 0.00 0.00 37.45 3.02
4652 5347 2.665603 GCCTTCGGGTCAGCTTCT 59.334 61.111 0.00 0.00 37.45 2.85
4653 5348 2.436824 GGCCTTCGGGTCAGCTTC 60.437 66.667 0.00 0.00 40.02 3.86
4654 5349 3.249189 TGGCCTTCGGGTCAGCTT 61.249 61.111 3.32 0.00 45.92 3.74
4659 5354 2.699954 CATGTATATGGCCTTCGGGTC 58.300 52.381 3.32 0.00 40.83 4.46
4660 5355 1.271379 GCATGTATATGGCCTTCGGGT 60.271 52.381 3.32 0.00 34.60 5.28
4661 5356 1.271325 TGCATGTATATGGCCTTCGGG 60.271 52.381 3.32 0.00 34.79 5.14
4662 5357 2.079158 CTGCATGTATATGGCCTTCGG 58.921 52.381 3.32 0.00 34.79 4.30
4663 5358 2.079158 CCTGCATGTATATGGCCTTCG 58.921 52.381 3.32 0.00 34.79 3.79
4664 5359 3.341823 CTCCTGCATGTATATGGCCTTC 58.658 50.000 3.32 0.00 34.79 3.46
4665 5360 2.553904 GCTCCTGCATGTATATGGCCTT 60.554 50.000 3.32 0.00 39.41 4.35
4666 5361 1.004044 GCTCCTGCATGTATATGGCCT 59.996 52.381 3.32 0.00 39.41 5.19
4667 5362 1.271543 TGCTCCTGCATGTATATGGCC 60.272 52.381 0.00 0.00 45.31 5.36
4668 5363 2.189594 TGCTCCTGCATGTATATGGC 57.810 50.000 1.33 0.00 45.31 4.40
4679 5374 0.248843 AAGTACTCTGCTGCTCCTGC 59.751 55.000 0.00 0.00 40.20 4.85
4680 5375 2.481104 GCTAAGTACTCTGCTGCTCCTG 60.481 54.545 11.39 0.00 0.00 3.86
4681 5376 1.754226 GCTAAGTACTCTGCTGCTCCT 59.246 52.381 11.39 0.00 0.00 3.69
4682 5377 1.202475 GGCTAAGTACTCTGCTGCTCC 60.202 57.143 16.27 0.69 0.00 4.70
4683 5378 1.754226 AGGCTAAGTACTCTGCTGCTC 59.246 52.381 16.27 3.95 0.00 4.26
4684 5379 1.859302 AGGCTAAGTACTCTGCTGCT 58.141 50.000 16.27 6.54 0.00 4.24
4685 5380 2.952978 TCTAGGCTAAGTACTCTGCTGC 59.047 50.000 16.27 0.00 0.00 5.25
4686 5381 4.824537 TGATCTAGGCTAAGTACTCTGCTG 59.175 45.833 16.27 9.45 0.00 4.41
4687 5382 5.055265 TGATCTAGGCTAAGTACTCTGCT 57.945 43.478 16.27 7.98 0.00 4.24
4688 5383 5.475220 TGATGATCTAGGCTAAGTACTCTGC 59.525 44.000 10.50 10.50 0.00 4.26
4689 5384 6.714810 AGTGATGATCTAGGCTAAGTACTCTG 59.285 42.308 0.00 0.00 0.00 3.35
4690 5385 6.848069 AGTGATGATCTAGGCTAAGTACTCT 58.152 40.000 0.00 0.00 0.00 3.24
4691 5386 8.801882 ATAGTGATGATCTAGGCTAAGTACTC 57.198 38.462 0.00 0.00 0.00 2.59
4692 5387 8.387039 TGATAGTGATGATCTAGGCTAAGTACT 58.613 37.037 0.00 0.00 0.00 2.73
4693 5388 8.568676 TGATAGTGATGATCTAGGCTAAGTAC 57.431 38.462 0.00 0.00 0.00 2.73
4694 5389 9.760926 AATGATAGTGATGATCTAGGCTAAGTA 57.239 33.333 0.00 0.00 0.00 2.24
4695 5390 8.530311 CAATGATAGTGATGATCTAGGCTAAGT 58.470 37.037 0.00 0.00 0.00 2.24
4696 5391 8.530311 ACAATGATAGTGATGATCTAGGCTAAG 58.470 37.037 0.00 0.00 0.00 2.18
4697 5392 8.427902 ACAATGATAGTGATGATCTAGGCTAA 57.572 34.615 0.00 0.00 0.00 3.09
4698 5393 8.427902 AACAATGATAGTGATGATCTAGGCTA 57.572 34.615 0.00 0.00 0.00 3.93
4699 5394 6.931790 ACAATGATAGTGATGATCTAGGCT 57.068 37.500 0.00 0.00 0.00 4.58
4700 5395 7.277539 GCTAACAATGATAGTGATGATCTAGGC 59.722 40.741 0.00 0.00 0.00 3.93
4701 5396 8.309656 TGCTAACAATGATAGTGATGATCTAGG 58.690 37.037 0.00 0.00 0.00 3.02
4702 5397 9.356433 CTGCTAACAATGATAGTGATGATCTAG 57.644 37.037 0.00 0.00 0.00 2.43
4703 5398 7.816513 GCTGCTAACAATGATAGTGATGATCTA 59.183 37.037 0.00 0.00 0.00 1.98
4704 5399 6.649973 GCTGCTAACAATGATAGTGATGATCT 59.350 38.462 0.00 0.00 0.00 2.75
4705 5400 6.426025 TGCTGCTAACAATGATAGTGATGATC 59.574 38.462 0.00 0.00 0.00 2.92
4706 5401 6.293698 TGCTGCTAACAATGATAGTGATGAT 58.706 36.000 0.00 0.00 0.00 2.45
4707 5402 5.673514 TGCTGCTAACAATGATAGTGATGA 58.326 37.500 0.00 0.00 0.00 2.92
4708 5403 5.756833 TCTGCTGCTAACAATGATAGTGATG 59.243 40.000 0.00 0.00 0.00 3.07
4709 5404 5.922053 TCTGCTGCTAACAATGATAGTGAT 58.078 37.500 0.00 0.00 0.00 3.06
4710 5405 5.105187 ACTCTGCTGCTAACAATGATAGTGA 60.105 40.000 0.00 0.00 0.00 3.41
4711 5406 5.114780 ACTCTGCTGCTAACAATGATAGTG 58.885 41.667 0.00 0.00 0.00 2.74
4712 5407 5.350504 ACTCTGCTGCTAACAATGATAGT 57.649 39.130 0.00 0.00 0.00 2.12
4713 5408 6.511416 AGTACTCTGCTGCTAACAATGATAG 58.489 40.000 0.00 0.00 0.00 2.08
4714 5409 6.096846 TGAGTACTCTGCTGCTAACAATGATA 59.903 38.462 23.01 0.00 0.00 2.15
4715 5410 5.105187 TGAGTACTCTGCTGCTAACAATGAT 60.105 40.000 23.01 0.00 0.00 2.45
4716 5411 4.220602 TGAGTACTCTGCTGCTAACAATGA 59.779 41.667 23.01 0.00 0.00 2.57
4717 5412 4.328440 GTGAGTACTCTGCTGCTAACAATG 59.672 45.833 23.01 0.00 0.00 2.82
4718 5413 4.499183 GTGAGTACTCTGCTGCTAACAAT 58.501 43.478 23.01 0.00 0.00 2.71
4719 5414 3.611766 CGTGAGTACTCTGCTGCTAACAA 60.612 47.826 23.01 0.00 0.00 2.83
4720 5415 2.095212 CGTGAGTACTCTGCTGCTAACA 60.095 50.000 23.01 0.00 0.00 2.41
4721 5416 2.520979 CGTGAGTACTCTGCTGCTAAC 58.479 52.381 23.01 9.62 0.00 2.34
4722 5417 1.135373 GCGTGAGTACTCTGCTGCTAA 60.135 52.381 23.01 0.00 0.00 3.09
4723 5418 0.452184 GCGTGAGTACTCTGCTGCTA 59.548 55.000 23.01 0.00 0.00 3.49
4724 5419 1.214062 GCGTGAGTACTCTGCTGCT 59.786 57.895 23.01 0.00 0.00 4.24
4725 5420 0.389166 AAGCGTGAGTACTCTGCTGC 60.389 55.000 30.70 23.60 40.19 5.25
4726 5421 1.623359 GAAGCGTGAGTACTCTGCTG 58.377 55.000 30.70 17.26 40.19 4.41
4727 5422 0.528470 GGAAGCGTGAGTACTCTGCT 59.472 55.000 27.10 27.10 41.37 4.24
4728 5423 0.458716 GGGAAGCGTGAGTACTCTGC 60.459 60.000 24.38 24.38 33.82 4.26
4729 5424 1.135257 CAGGGAAGCGTGAGTACTCTG 60.135 57.143 23.01 16.12 0.00 3.35
4730 5425 1.178276 CAGGGAAGCGTGAGTACTCT 58.822 55.000 23.01 2.71 0.00 3.24
4731 5426 0.889306 ACAGGGAAGCGTGAGTACTC 59.111 55.000 16.32 16.32 0.00 2.59
4732 5427 1.000955 CAACAGGGAAGCGTGAGTACT 59.999 52.381 0.00 0.00 0.00 2.73
4733 5428 1.270147 ACAACAGGGAAGCGTGAGTAC 60.270 52.381 0.00 0.00 0.00 2.73
4734 5429 1.045407 ACAACAGGGAAGCGTGAGTA 58.955 50.000 0.00 0.00 0.00 2.59
4735 5430 0.180406 AACAACAGGGAAGCGTGAGT 59.820 50.000 0.00 0.00 0.00 3.41
4736 5431 2.163818 TAACAACAGGGAAGCGTGAG 57.836 50.000 0.00 0.00 0.00 3.51
4737 5432 2.422597 CATAACAACAGGGAAGCGTGA 58.577 47.619 0.00 0.00 0.00 4.35
4738 5433 1.468520 CCATAACAACAGGGAAGCGTG 59.531 52.381 0.00 0.00 0.00 5.34
4739 5434 1.821216 CCATAACAACAGGGAAGCGT 58.179 50.000 0.00 0.00 0.00 5.07
4740 5435 0.451783 GCCATAACAACAGGGAAGCG 59.548 55.000 0.00 0.00 0.00 4.68
4741 5436 1.474077 CAGCCATAACAACAGGGAAGC 59.526 52.381 0.00 0.00 0.00 3.86
4742 5437 1.474077 GCAGCCATAACAACAGGGAAG 59.526 52.381 0.00 0.00 0.00 3.46
4743 5438 1.544724 GCAGCCATAACAACAGGGAA 58.455 50.000 0.00 0.00 0.00 3.97
4744 5439 0.323360 GGCAGCCATAACAACAGGGA 60.323 55.000 6.55 0.00 0.00 4.20
4745 5440 1.322538 GGGCAGCCATAACAACAGGG 61.323 60.000 15.19 0.00 0.00 4.45
4746 5441 1.322538 GGGGCAGCCATAACAACAGG 61.323 60.000 15.19 0.00 0.00 4.00
4747 5442 0.611618 TGGGGCAGCCATAACAACAG 60.612 55.000 15.19 0.00 0.00 3.16
4748 5443 0.611618 CTGGGGCAGCCATAACAACA 60.612 55.000 15.19 0.00 0.00 3.33
4749 5444 2.192605 CTGGGGCAGCCATAACAAC 58.807 57.895 15.19 0.00 0.00 3.32
4750 5445 4.762016 CTGGGGCAGCCATAACAA 57.238 55.556 15.19 0.00 0.00 2.83
4766 5461 0.405585 ACATAACAACCAGCTGGGCT 59.594 50.000 35.42 20.13 42.05 5.19
4767 5462 1.202348 GAACATAACAACCAGCTGGGC 59.798 52.381 35.42 8.40 42.05 5.36
4768 5463 2.228822 GTGAACATAACAACCAGCTGGG 59.771 50.000 35.42 21.48 44.81 4.45
4769 5464 2.095768 CGTGAACATAACAACCAGCTGG 60.096 50.000 31.60 31.60 42.17 4.85
4770 5465 2.548057 ACGTGAACATAACAACCAGCTG 59.452 45.455 6.78 6.78 0.00 4.24
4771 5466 2.548057 CACGTGAACATAACAACCAGCT 59.452 45.455 10.90 0.00 0.00 4.24
4772 5467 2.289547 ACACGTGAACATAACAACCAGC 59.710 45.455 25.01 0.00 0.00 4.85
4773 5468 4.748102 ACTACACGTGAACATAACAACCAG 59.252 41.667 25.01 0.00 0.00 4.00
4774 5469 4.695396 ACTACACGTGAACATAACAACCA 58.305 39.130 25.01 0.00 0.00 3.67
4775 5470 6.183360 CCATACTACACGTGAACATAACAACC 60.183 42.308 25.01 0.00 0.00 3.77
4776 5471 6.671402 GCCATACTACACGTGAACATAACAAC 60.671 42.308 25.01 0.00 0.00 3.32
4777 5472 5.349270 GCCATACTACACGTGAACATAACAA 59.651 40.000 25.01 0.00 0.00 2.83
4778 5473 4.865925 GCCATACTACACGTGAACATAACA 59.134 41.667 25.01 0.00 0.00 2.41
4779 5474 4.865925 TGCCATACTACACGTGAACATAAC 59.134 41.667 25.01 5.71 0.00 1.89
4780 5475 4.865925 GTGCCATACTACACGTGAACATAA 59.134 41.667 25.01 2.47 0.00 1.90
4781 5476 4.082136 TGTGCCATACTACACGTGAACATA 60.082 41.667 25.01 9.16 39.71 2.29
4782 5477 3.259064 GTGCCATACTACACGTGAACAT 58.741 45.455 25.01 6.71 0.00 2.71
4783 5478 2.036089 TGTGCCATACTACACGTGAACA 59.964 45.455 25.01 5.81 39.71 3.18
4784 5479 2.679450 TGTGCCATACTACACGTGAAC 58.321 47.619 25.01 6.39 39.71 3.18
4785 5480 3.388345 TTGTGCCATACTACACGTGAA 57.612 42.857 25.01 4.79 39.71 3.18
4786 5481 3.388345 TTTGTGCCATACTACACGTGA 57.612 42.857 25.01 4.97 39.71 4.35
4787 5482 3.248841 TGTTTTGTGCCATACTACACGTG 59.751 43.478 15.48 15.48 39.71 4.49
4788 5483 3.468770 TGTTTTGTGCCATACTACACGT 58.531 40.909 0.00 0.00 39.71 4.49
4789 5484 4.475763 TTGTTTTGTGCCATACTACACG 57.524 40.909 0.00 0.00 39.71 4.49
4790 5485 6.442952 TGAATTGTTTTGTGCCATACTACAC 58.557 36.000 0.00 0.00 37.31 2.90
4791 5486 6.641169 TGAATTGTTTTGTGCCATACTACA 57.359 33.333 0.00 0.00 0.00 2.74
4792 5487 7.812191 TGATTGAATTGTTTTGTGCCATACTAC 59.188 33.333 0.00 0.00 0.00 2.73
4793 5488 7.890515 TGATTGAATTGTTTTGTGCCATACTA 58.109 30.769 0.00 0.00 0.00 1.82
4794 5489 6.757237 TGATTGAATTGTTTTGTGCCATACT 58.243 32.000 0.00 0.00 0.00 2.12
4795 5490 7.418840 TTGATTGAATTGTTTTGTGCCATAC 57.581 32.000 0.00 0.00 0.00 2.39
4796 5491 8.618702 AATTGATTGAATTGTTTTGTGCCATA 57.381 26.923 0.00 0.00 32.69 2.74
4797 5492 7.513371 AATTGATTGAATTGTTTTGTGCCAT 57.487 28.000 0.00 0.00 32.69 4.40
4798 5493 6.939132 AATTGATTGAATTGTTTTGTGCCA 57.061 29.167 0.00 0.00 32.69 4.92
4799 5494 7.802720 GGTTAATTGATTGAATTGTTTTGTGCC 59.197 33.333 0.00 0.00 35.74 5.01
4800 5495 7.802720 GGGTTAATTGATTGAATTGTTTTGTGC 59.197 33.333 0.00 0.00 35.74 4.57
4801 5496 8.834465 TGGGTTAATTGATTGAATTGTTTTGTG 58.166 29.630 0.00 0.00 35.74 3.33
4802 5497 8.970859 TGGGTTAATTGATTGAATTGTTTTGT 57.029 26.923 0.00 0.00 35.74 2.83
4813 5508 9.942850 GGGGAAATTATATGGGTTAATTGATTG 57.057 33.333 0.00 0.00 31.39 2.67
4814 5509 9.912461 AGGGGAAATTATATGGGTTAATTGATT 57.088 29.630 0.00 0.00 31.39 2.57
4886 5581 9.332502 TGTCAAAGAAATAGCACAACTAGTAAA 57.667 29.630 0.00 0.00 33.29 2.01
4887 5582 8.896320 TGTCAAAGAAATAGCACAACTAGTAA 57.104 30.769 0.00 0.00 33.29 2.24
4888 5583 8.896320 TTGTCAAAGAAATAGCACAACTAGTA 57.104 30.769 0.00 0.00 33.29 1.82
4889 5584 7.801716 TTGTCAAAGAAATAGCACAACTAGT 57.198 32.000 0.00 0.00 33.29 2.57
4890 5585 9.683069 ATTTTGTCAAAGAAATAGCACAACTAG 57.317 29.630 0.00 0.00 33.29 2.57
4892 5587 9.463443 GTATTTTGTCAAAGAAATAGCACAACT 57.537 29.630 0.00 0.00 30.69 3.16
4893 5588 9.463443 AGTATTTTGTCAAAGAAATAGCACAAC 57.537 29.630 0.00 0.00 30.69 3.32
4901 5596 9.463443 GCACAACTAGTATTTTGTCAAAGAAAT 57.537 29.630 0.00 0.00 33.59 2.17
4902 5597 8.682710 AGCACAACTAGTATTTTGTCAAAGAAA 58.317 29.630 0.00 0.00 33.59 2.52
4903 5598 8.220755 AGCACAACTAGTATTTTGTCAAAGAA 57.779 30.769 0.00 0.00 33.59 2.52
4904 5599 7.801716 AGCACAACTAGTATTTTGTCAAAGA 57.198 32.000 0.00 0.00 33.59 2.52
4908 5603 9.502091 AGAAATAGCACAACTAGTATTTTGTCA 57.498 29.630 0.00 0.00 33.59 3.58
4937 5632 7.346751 TCTTTTCTCAGTGGCAAGTATTTTT 57.653 32.000 0.00 0.00 0.00 1.94
4938 5633 6.959639 TCTTTTCTCAGTGGCAAGTATTTT 57.040 33.333 0.00 0.00 0.00 1.82
4939 5634 6.515696 GCTTCTTTTCTCAGTGGCAAGTATTT 60.516 38.462 0.00 0.00 0.00 1.40
4940 5635 5.048434 GCTTCTTTTCTCAGTGGCAAGTATT 60.048 40.000 0.00 0.00 0.00 1.89
4941 5636 4.457257 GCTTCTTTTCTCAGTGGCAAGTAT 59.543 41.667 0.00 0.00 0.00 2.12
4942 5637 3.815401 GCTTCTTTTCTCAGTGGCAAGTA 59.185 43.478 0.00 0.00 0.00 2.24
4943 5638 2.620585 GCTTCTTTTCTCAGTGGCAAGT 59.379 45.455 0.00 0.00 0.00 3.16
4944 5639 2.350197 CGCTTCTTTTCTCAGTGGCAAG 60.350 50.000 0.00 0.00 0.00 4.01
4945 5640 1.603802 CGCTTCTTTTCTCAGTGGCAA 59.396 47.619 0.00 0.00 0.00 4.52
4946 5641 1.229428 CGCTTCTTTTCTCAGTGGCA 58.771 50.000 0.00 0.00 0.00 4.92
4947 5642 1.230324 ACGCTTCTTTTCTCAGTGGC 58.770 50.000 0.00 0.00 0.00 5.01
4948 5643 2.996621 CCTACGCTTCTTTTCTCAGTGG 59.003 50.000 0.00 0.00 0.00 4.00
4949 5644 2.413453 GCCTACGCTTCTTTTCTCAGTG 59.587 50.000 0.00 0.00 0.00 3.66
4950 5645 2.689646 GCCTACGCTTCTTTTCTCAGT 58.310 47.619 0.00 0.00 0.00 3.41
4951 5646 1.656095 CGCCTACGCTTCTTTTCTCAG 59.344 52.381 0.00 0.00 0.00 3.35
4952 5647 1.000506 ACGCCTACGCTTCTTTTCTCA 59.999 47.619 0.00 0.00 45.53 3.27
4953 5648 1.654602 GACGCCTACGCTTCTTTTCTC 59.345 52.381 0.00 0.00 45.53 2.87
4954 5649 1.000506 TGACGCCTACGCTTCTTTTCT 59.999 47.619 0.00 0.00 45.53 2.52
4955 5650 1.390463 CTGACGCCTACGCTTCTTTTC 59.610 52.381 0.00 0.00 45.53 2.29
4956 5651 1.270147 ACTGACGCCTACGCTTCTTTT 60.270 47.619 0.00 0.00 45.53 2.27
4957 5652 0.317479 ACTGACGCCTACGCTTCTTT 59.683 50.000 0.00 0.00 45.53 2.52
4958 5653 1.171308 TACTGACGCCTACGCTTCTT 58.829 50.000 0.00 0.00 45.53 2.52
4959 5654 1.390565 ATACTGACGCCTACGCTTCT 58.609 50.000 0.00 0.00 45.53 2.85
4960 5655 3.344904 TTATACTGACGCCTACGCTTC 57.655 47.619 0.00 0.00 45.53 3.86
4961 5656 3.788333 TTTATACTGACGCCTACGCTT 57.212 42.857 0.00 0.00 45.53 4.68
4962 5657 3.129988 AGTTTTATACTGACGCCTACGCT 59.870 43.478 0.00 0.00 38.20 5.07
4963 5658 3.442100 AGTTTTATACTGACGCCTACGC 58.558 45.455 0.00 0.00 38.20 4.42
4964 5659 4.972440 GGTAGTTTTATACTGACGCCTACG 59.028 45.833 0.00 0.00 40.83 3.51
4965 5660 5.745769 GTGGTAGTTTTATACTGACGCCTAC 59.254 44.000 0.00 0.00 37.73 3.18
4966 5661 5.449041 CGTGGTAGTTTTATACTGACGCCTA 60.449 44.000 0.00 0.00 37.73 3.93
4967 5662 4.676196 CGTGGTAGTTTTATACTGACGCCT 60.676 45.833 0.00 0.00 37.73 5.52
4968 5663 3.549070 CGTGGTAGTTTTATACTGACGCC 59.451 47.826 0.00 0.00 37.73 5.68
4969 5664 4.168760 ACGTGGTAGTTTTATACTGACGC 58.831 43.478 0.00 0.00 38.13 5.19
4970 5665 5.453587 GCTACGTGGTAGTTTTATACTGACG 59.546 44.000 0.00 0.00 38.30 4.35
4971 5666 5.745769 GGCTACGTGGTAGTTTTATACTGAC 59.254 44.000 0.00 0.00 38.30 3.51
4972 5667 5.418524 TGGCTACGTGGTAGTTTTATACTGA 59.581 40.000 0.00 0.00 38.30 3.41
4973 5668 5.653507 TGGCTACGTGGTAGTTTTATACTG 58.346 41.667 0.00 0.00 38.30 2.74
4974 5669 5.920193 TGGCTACGTGGTAGTTTTATACT 57.080 39.130 0.00 0.00 38.30 2.12
4975 5670 5.693555 GGATGGCTACGTGGTAGTTTTATAC 59.306 44.000 0.00 0.00 38.30 1.47
4976 5671 5.599656 AGGATGGCTACGTGGTAGTTTTATA 59.400 40.000 0.00 0.00 38.30 0.98
4977 5672 4.407945 AGGATGGCTACGTGGTAGTTTTAT 59.592 41.667 0.00 0.00 38.30 1.40
4978 5673 3.770933 AGGATGGCTACGTGGTAGTTTTA 59.229 43.478 0.00 0.00 38.30 1.52
4979 5674 2.570302 AGGATGGCTACGTGGTAGTTTT 59.430 45.455 0.00 0.00 38.30 2.43
4980 5675 2.185387 AGGATGGCTACGTGGTAGTTT 58.815 47.619 0.00 0.00 38.30 2.66
4981 5676 1.861982 AGGATGGCTACGTGGTAGTT 58.138 50.000 0.00 0.00 38.30 2.24
4982 5677 1.755380 GAAGGATGGCTACGTGGTAGT 59.245 52.381 0.00 0.00 38.30 2.73
4983 5678 2.032620 AGAAGGATGGCTACGTGGTAG 58.967 52.381 0.00 0.00 38.97 3.18
4984 5679 2.154567 AGAAGGATGGCTACGTGGTA 57.845 50.000 0.00 0.00 0.00 3.25
4985 5680 1.276622 AAGAAGGATGGCTACGTGGT 58.723 50.000 0.00 0.00 0.00 4.16
4986 5681 2.403252 AAAGAAGGATGGCTACGTGG 57.597 50.000 0.00 0.00 0.00 4.94
4987 5682 3.181520 CGAAAAAGAAGGATGGCTACGTG 60.182 47.826 0.00 0.00 0.00 4.49
4988 5683 3.000727 CGAAAAAGAAGGATGGCTACGT 58.999 45.455 0.00 0.00 0.00 3.57
4989 5684 3.259064 TCGAAAAAGAAGGATGGCTACG 58.741 45.455 0.00 0.00 0.00 3.51
4990 5685 4.254492 ACTCGAAAAAGAAGGATGGCTAC 58.746 43.478 0.00 0.00 0.00 3.58
4991 5686 4.553330 ACTCGAAAAAGAAGGATGGCTA 57.447 40.909 0.00 0.00 0.00 3.93
4992 5687 3.425162 ACTCGAAAAAGAAGGATGGCT 57.575 42.857 0.00 0.00 0.00 4.75
4993 5688 5.819825 AATACTCGAAAAAGAAGGATGGC 57.180 39.130 0.00 0.00 0.00 4.40
4994 5689 7.094805 TGTCAAATACTCGAAAAAGAAGGATGG 60.095 37.037 0.00 0.00 0.00 3.51
4995 5690 7.806690 TGTCAAATACTCGAAAAAGAAGGATG 58.193 34.615 0.00 0.00 0.00 3.51
4996 5691 7.979444 TGTCAAATACTCGAAAAAGAAGGAT 57.021 32.000 0.00 0.00 0.00 3.24
4997 5692 7.795482 TTGTCAAATACTCGAAAAAGAAGGA 57.205 32.000 0.00 0.00 0.00 3.36
4998 5693 8.850454 TTTTGTCAAATACTCGAAAAAGAAGG 57.150 30.769 0.00 0.00 0.00 3.46
5026 5725 1.340211 CGGCAACCCCTAATGTGGTAA 60.340 52.381 0.00 0.00 33.52 2.85
5166 5872 4.740822 GCAGGTGGGTCCCGCATT 62.741 66.667 23.12 7.82 35.42 3.56
5190 5897 2.665185 GACTTTGCCGCCACGTCT 60.665 61.111 0.00 0.00 0.00 4.18
5290 6032 6.366877 GCACATAAGATGTTTGTTGAAATGCT 59.633 34.615 0.00 0.00 42.70 3.79
5319 6061 2.087646 GGAGTTCACCTGCTTTCATCC 58.912 52.381 0.00 0.00 0.00 3.51
5322 6065 0.250295 CCGGAGTTCACCTGCTTTCA 60.250 55.000 0.00 0.00 0.00 2.69
5354 6097 2.584418 CTGGATGAGCACGCTCGG 60.584 66.667 14.00 0.00 45.48 4.63
5530 6300 2.056223 TAGCTTTAGGGCTCGCCGT 61.056 57.895 8.32 8.32 42.97 5.68
5583 6353 2.437897 CTGGAGGCCCAAAGCAGT 59.562 61.111 0.00 0.00 46.50 4.40
5799 9754 4.776322 CCTTGCGCCCCGATGACA 62.776 66.667 4.18 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.