Multiple sequence alignment - TraesCS5D01G547400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G547400 chr5D 100.000 2610 0 0 1 2610 555503207 555505816 0.000000e+00 4820.0
1 TraesCS5D01G547400 chr5D 91.609 2038 123 13 1 2026 555064069 555066070 0.000000e+00 2772.0
2 TraesCS5D01G547400 chr5D 82.928 1933 269 40 6 1917 555489049 555490941 0.000000e+00 1685.0
3 TraesCS5D01G547400 chr5D 81.420 1620 284 14 6 1615 555637686 555639298 0.000000e+00 1308.0
4 TraesCS5D01G547400 chr5D 81.701 1552 248 24 35 1570 555908625 555910156 0.000000e+00 1260.0
5 TraesCS5D01G547400 chr5D 80.550 1635 301 15 1 1627 555557357 555558982 0.000000e+00 1242.0
6 TraesCS5D01G547400 chr5D 91.279 344 27 1 6 349 555047906 555048246 1.410000e-127 466.0
7 TraesCS5D01G547400 chr5D 94.091 220 8 2 2396 2610 299358607 299358826 1.940000e-86 329.0
8 TraesCS5D01G547400 chr5D 93.304 224 8 3 2394 2610 495290030 495289807 9.010000e-85 324.0
9 TraesCS5D01G547400 chr5D 88.667 150 16 1 2198 2346 555066144 555066293 5.740000e-42 182.0
10 TraesCS5D01G547400 chr5B 81.304 1626 285 16 1 1615 695812559 695810942 0.000000e+00 1301.0
11 TraesCS5D01G547400 chr5B 81.657 1581 251 29 9 1574 695492030 695490474 0.000000e+00 1277.0
12 TraesCS5D01G547400 chr5B 80.429 1630 294 22 1 1615 695694939 695693320 0.000000e+00 1219.0
13 TraesCS5D01G547400 chr5B 86.863 510 61 5 1122 1627 695720510 695720003 1.360000e-157 566.0
14 TraesCS5D01G547400 chr5B 93.056 144 8 2 2023 2166 566590107 566589966 2.630000e-50 209.0
15 TraesCS5D01G547400 chr5B 86.207 87 12 0 1779 1865 695719893 695719807 7.690000e-16 95.3
16 TraesCS5D01G547400 chr6A 79.679 1560 284 24 24 1574 584948882 584947347 0.000000e+00 1094.0
17 TraesCS5D01G547400 chr6A 80.235 1361 248 18 233 1585 11233972 11232625 0.000000e+00 1003.0
18 TraesCS5D01G547400 chr3D 95.045 222 6 3 2393 2610 83730719 83730939 6.920000e-91 344.0
19 TraesCS5D01G547400 chr3D 94.884 215 6 2 2401 2610 121908171 121907957 5.380000e-87 331.0
20 TraesCS5D01G547400 chr3D 93.243 222 9 3 2395 2610 480130088 480130309 3.240000e-84 322.0
21 TraesCS5D01G547400 chr3D 95.652 138 6 0 2022 2159 461411750 461411887 3.380000e-54 222.0
22 TraesCS5D01G547400 chr3D 93.617 141 9 0 2019 2159 461406861 461407001 7.320000e-51 211.0
23 TraesCS5D01G547400 chr3B 94.064 219 9 2 2396 2610 765781640 765781858 1.940000e-86 329.0
24 TraesCS5D01G547400 chr5A 93.578 218 14 0 2393 2610 647746798 647746581 2.500000e-85 326.0
25 TraesCS5D01G547400 chr5A 94.444 144 6 2 2023 2166 709610663 709610522 1.220000e-53 220.0
26 TraesCS5D01G547400 chr5A 93.571 140 9 0 2022 2161 709552100 709551961 2.630000e-50 209.0
27 TraesCS5D01G547400 chr2D 93.636 220 9 3 2396 2610 62016663 62016444 9.010000e-85 324.0
28 TraesCS5D01G547400 chr2D 94.203 138 8 0 2022 2159 73271099 73271236 7.320000e-51 211.0
29 TraesCS5D01G547400 chr1B 92.478 226 12 3 2390 2610 676855833 676856058 4.190000e-83 318.0
30 TraesCS5D01G547400 chrUn 95.035 141 6 1 2022 2161 28931230 28931090 1.220000e-53 220.0
31 TraesCS5D01G547400 chrUn 92.361 144 9 2 2023 2166 28990442 28990301 1.220000e-48 204.0
32 TraesCS5D01G547400 chr6D 94.928 138 7 0 2022 2159 12548890 12549027 1.570000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G547400 chr5D 555503207 555505816 2609 False 4820.00 4820 100.000 1 2610 1 chr5D.!!$F4 2609
1 TraesCS5D01G547400 chr5D 555489049 555490941 1892 False 1685.00 1685 82.928 6 1917 1 chr5D.!!$F3 1911
2 TraesCS5D01G547400 chr5D 555064069 555066293 2224 False 1477.00 2772 90.138 1 2346 2 chr5D.!!$F8 2345
3 TraesCS5D01G547400 chr5D 555637686 555639298 1612 False 1308.00 1308 81.420 6 1615 1 chr5D.!!$F6 1609
4 TraesCS5D01G547400 chr5D 555908625 555910156 1531 False 1260.00 1260 81.701 35 1570 1 chr5D.!!$F7 1535
5 TraesCS5D01G547400 chr5D 555557357 555558982 1625 False 1242.00 1242 80.550 1 1627 1 chr5D.!!$F5 1626
6 TraesCS5D01G547400 chr5B 695810942 695812559 1617 True 1301.00 1301 81.304 1 1615 1 chr5B.!!$R4 1614
7 TraesCS5D01G547400 chr5B 695490474 695492030 1556 True 1277.00 1277 81.657 9 1574 1 chr5B.!!$R2 1565
8 TraesCS5D01G547400 chr5B 695693320 695694939 1619 True 1219.00 1219 80.429 1 1615 1 chr5B.!!$R3 1614
9 TraesCS5D01G547400 chr5B 695719807 695720510 703 True 330.65 566 86.535 1122 1865 2 chr5B.!!$R5 743
10 TraesCS5D01G547400 chr6A 584947347 584948882 1535 True 1094.00 1094 79.679 24 1574 1 chr6A.!!$R2 1550
11 TraesCS5D01G547400 chr6A 11232625 11233972 1347 True 1003.00 1003 80.235 233 1585 1 chr6A.!!$R1 1352

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 978 0.961019 TGCACTGTGATTTGAAGCCC 59.039 50.0 12.86 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2347 2435 0.032813 ATGTGGCCAGGCAGCTAATT 60.033 50.0 15.19 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.605449 CAAACTACATGGACATTTCTTCCAAT 58.395 34.615 0.00 0.00 46.37 3.16
164 167 2.096218 CAGGCACACTCGAAAAGCTAAC 60.096 50.000 0.00 0.00 0.00 2.34
248 251 8.184192 CCTTGCCAAGTTTACATATTTGACTAG 58.816 37.037 3.37 0.00 0.00 2.57
258 261 6.992063 ACATATTTGACTAGCTTGAACCTG 57.008 37.500 1.04 0.00 0.00 4.00
269 272 6.820656 ACTAGCTTGAACCTGTCATTCAATAG 59.179 38.462 1.04 5.51 43.31 1.73
270 273 4.397417 AGCTTGAACCTGTCATTCAATAGC 59.603 41.667 2.79 4.19 43.31 2.97
271 274 4.156556 GCTTGAACCTGTCATTCAATAGCA 59.843 41.667 2.79 0.00 43.31 3.49
291 294 1.139058 AGTCTAGCAGGCCAAATACCG 59.861 52.381 5.01 0.00 0.00 4.02
340 343 1.672881 CGCAGTCCTTGATTGGGAATC 59.327 52.381 0.00 0.00 35.02 2.52
450 453 5.239525 ACTTCCAACACTCACATTAGCTTTC 59.760 40.000 0.00 0.00 0.00 2.62
474 477 4.319261 GGCGCCGTTGTTATTTCCTTATAG 60.319 45.833 12.58 0.00 0.00 1.31
529 532 6.766944 AGACATCAAAGCTTCTATTGATCCAG 59.233 38.462 8.14 2.01 42.72 3.86
533 536 3.488778 AGCTTCTATTGATCCAGCTGG 57.511 47.619 27.87 27.87 39.40 4.85
558 561 6.714810 GTGTCATAGACCATCAGATAGTCTCT 59.285 42.308 14.10 3.23 41.09 3.10
693 696 6.389906 GGTAAAAGTTATTGACATGCAGCTT 58.610 36.000 0.00 0.00 0.00 3.74
807 810 3.643792 ACCTTGACTTCAGAGCACTAGTT 59.356 43.478 0.00 0.00 0.00 2.24
872 875 2.354203 GGTCTCAGAGTTCATGTCACCC 60.354 54.545 0.00 0.00 0.00 4.61
911 914 1.019673 GGCATCATGCTCGATGTGTT 58.980 50.000 10.11 0.00 44.28 3.32
945 948 3.452264 AGTATCTGCACCATGAGCACTAA 59.548 43.478 8.47 0.00 37.02 2.24
966 969 4.418973 AGAGCTGATATTGCACTGTGAT 57.581 40.909 12.86 0.00 30.68 3.06
975 978 0.961019 TGCACTGTGATTTGAAGCCC 59.039 50.000 12.86 0.00 0.00 5.19
1041 1044 2.459060 TTGGCATTGCAAGGTTGATG 57.541 45.000 13.30 1.86 0.00 3.07
1057 1060 3.443099 TGATGCTAGATGACAACTCCG 57.557 47.619 0.00 0.00 0.00 4.63
1106 1109 0.621609 GGGTACATGGCACCAGGTAA 59.378 55.000 15.19 0.00 43.33 2.85
1358 1379 2.039348 GGCACACAACTAACCCTTAGGA 59.961 50.000 0.00 0.00 37.57 2.94
1372 1393 3.610911 CCTTAGGAAGTGGGTTCATCAC 58.389 50.000 0.00 0.00 36.82 3.06
1510 1532 4.082733 CGATGTTCTAGTGACTCTCCACAA 60.083 45.833 0.00 0.00 39.42 3.33
1515 1537 3.821600 TCTAGTGACTCTCCACAACAGAC 59.178 47.826 0.00 0.00 39.42 3.51
1552 1574 0.596600 TGGTCGTGACGCTGAAGAAC 60.597 55.000 0.00 0.00 0.00 3.01
1587 1612 4.679654 GCACACCAAATTTGTAGCAACTAC 59.320 41.667 16.73 0.00 37.46 2.73
1588 1613 5.734786 GCACACCAAATTTGTAGCAACTACA 60.735 40.000 16.73 3.37 44.00 2.74
1605 1630 0.880278 ACACCAACTAGTGCAGCACG 60.880 55.000 19.96 9.32 41.67 5.34
1639 1664 2.680312 TGTGCTTATGTCTCCTCTGC 57.320 50.000 0.00 0.00 0.00 4.26
1717 1744 8.635765 AGAACAACCACATAACTTCATGTATT 57.364 30.769 0.00 0.00 37.02 1.89
1719 1746 7.759489 ACAACCACATAACTTCATGTATTGT 57.241 32.000 10.15 10.15 39.83 2.71
1856 1884 7.067372 TCAGTCATGAACAAAACTGAACAAGAT 59.933 33.333 9.53 0.00 43.69 2.40
1902 1944 6.150140 CCTTCTGTTCCCAAAACTCTGAATAG 59.850 42.308 0.00 0.00 0.00 1.73
1917 1959 5.500234 TCTGAATAGGAGTTCACATTTGGG 58.500 41.667 0.00 0.00 34.58 4.12
1935 1977 3.439154 TGGGATCTCTGATCATCCTAGC 58.561 50.000 11.87 0.00 38.98 3.42
1958 2000 2.063015 TTTCTCTCGCTTGGCCCCAA 62.063 55.000 0.00 0.00 0.00 4.12
1962 2004 1.745489 CTCGCTTGGCCCCAACTAC 60.745 63.158 0.00 0.00 0.00 2.73
1963 2005 2.033448 CGCTTGGCCCCAACTACA 59.967 61.111 0.00 0.00 0.00 2.74
1969 2011 3.495983 GCTTGGCCCCAACTACAATTTTT 60.496 43.478 0.00 0.00 0.00 1.94
1998 2040 2.347114 CCAGTGGGCGTCATCACA 59.653 61.111 0.00 0.00 36.43 3.58
1999 2041 1.742880 CCAGTGGGCGTCATCACAG 60.743 63.158 0.00 0.00 36.43 3.66
2023 2065 1.784062 GCGTGCTGCTTACTGAGTG 59.216 57.895 0.00 0.00 41.73 3.51
2024 2066 0.946221 GCGTGCTGCTTACTGAGTGT 60.946 55.000 0.00 0.00 41.73 3.55
2025 2067 1.502231 CGTGCTGCTTACTGAGTGTT 58.498 50.000 0.00 0.00 0.00 3.32
2026 2068 2.672714 CGTGCTGCTTACTGAGTGTTA 58.327 47.619 0.00 0.00 0.00 2.41
2027 2069 2.663602 CGTGCTGCTTACTGAGTGTTAG 59.336 50.000 0.00 0.00 0.00 2.34
2028 2070 3.611766 CGTGCTGCTTACTGAGTGTTAGA 60.612 47.826 0.00 0.00 0.00 2.10
2029 2071 3.923461 GTGCTGCTTACTGAGTGTTAGAG 59.077 47.826 0.00 0.00 0.00 2.43
2030 2072 3.574396 TGCTGCTTACTGAGTGTTAGAGT 59.426 43.478 0.00 0.00 0.00 3.24
2031 2073 4.039245 TGCTGCTTACTGAGTGTTAGAGTT 59.961 41.667 0.00 0.00 0.00 3.01
2032 2074 4.387256 GCTGCTTACTGAGTGTTAGAGTTG 59.613 45.833 0.00 0.00 0.00 3.16
2033 2075 5.531122 TGCTTACTGAGTGTTAGAGTTGT 57.469 39.130 0.00 0.00 0.00 3.32
2034 2076 6.644248 TGCTTACTGAGTGTTAGAGTTGTA 57.356 37.500 0.00 0.00 0.00 2.41
2035 2077 7.228314 TGCTTACTGAGTGTTAGAGTTGTAT 57.772 36.000 0.00 0.00 0.00 2.29
2036 2078 7.667557 TGCTTACTGAGTGTTAGAGTTGTATT 58.332 34.615 0.00 0.00 0.00 1.89
2037 2079 8.799367 TGCTTACTGAGTGTTAGAGTTGTATTA 58.201 33.333 0.00 0.00 0.00 0.98
2038 2080 9.804758 GCTTACTGAGTGTTAGAGTTGTATTAT 57.195 33.333 0.00 0.00 0.00 1.28
2071 2113 7.477144 ACGTGTACATGTTGTATATCCATTG 57.523 36.000 15.10 0.00 35.05 2.82
2072 2114 7.045416 ACGTGTACATGTTGTATATCCATTGT 58.955 34.615 15.10 0.00 35.05 2.71
2073 2115 8.198778 ACGTGTACATGTTGTATATCCATTGTA 58.801 33.333 15.10 0.00 35.05 2.41
2074 2116 9.203421 CGTGTACATGTTGTATATCCATTGTAT 57.797 33.333 2.30 0.00 35.05 2.29
2079 2121 9.866655 ACATGTTGTATATCCATTGTATTTCCT 57.133 29.630 0.00 0.00 0.00 3.36
2082 2124 9.693739 TGTTGTATATCCATTGTATTTCCTTGT 57.306 29.630 0.00 0.00 0.00 3.16
2085 2127 9.693739 TGTATATCCATTGTATTTCCTTGTTGT 57.306 29.630 0.00 0.00 0.00 3.32
2088 2130 9.693739 ATATCCATTGTATTTCCTTGTTGTACA 57.306 29.630 0.00 0.00 0.00 2.90
2089 2131 7.825331 TCCATTGTATTTCCTTGTTGTACAA 57.175 32.000 3.59 3.59 38.95 2.41
2121 2163 8.796475 TCTAATCAATATAAAAAGATGCCAGCC 58.204 33.333 0.00 0.00 0.00 4.85
2122 2164 5.437289 TCAATATAAAAAGATGCCAGCCG 57.563 39.130 0.00 0.00 0.00 5.52
2123 2165 4.278170 TCAATATAAAAAGATGCCAGCCGG 59.722 41.667 0.00 0.00 0.00 6.13
2124 2166 2.143876 ATAAAAAGATGCCAGCCGGT 57.856 45.000 1.90 0.00 33.28 5.28
2125 2167 1.917872 TAAAAAGATGCCAGCCGGTT 58.082 45.000 1.90 0.00 33.28 4.44
2126 2168 0.318120 AAAAAGATGCCAGCCGGTTG 59.682 50.000 11.98 11.98 33.28 3.77
2127 2169 1.535204 AAAAGATGCCAGCCGGTTGG 61.535 55.000 31.41 31.41 41.35 3.77
2128 2170 3.944250 AAGATGCCAGCCGGTTGGG 62.944 63.158 34.99 19.90 38.72 4.12
2139 2181 2.360726 GGTTGGGGCTAACCACGG 60.361 66.667 15.93 0.00 45.43 4.94
2140 2182 3.060000 GTTGGGGCTAACCACGGC 61.060 66.667 0.00 0.00 45.43 5.68
2141 2183 3.571216 TTGGGGCTAACCACGGCA 61.571 61.111 0.00 0.00 45.43 5.69
2142 2184 3.134703 TTGGGGCTAACCACGGCAA 62.135 57.895 0.00 0.00 45.43 4.52
2143 2185 2.282603 GGGGCTAACCACGGCAAA 60.283 61.111 0.00 0.00 42.91 3.68
2144 2186 1.680989 GGGGCTAACCACGGCAAAT 60.681 57.895 0.00 0.00 42.91 2.32
2145 2187 0.394625 GGGGCTAACCACGGCAAATA 60.395 55.000 0.00 0.00 42.91 1.40
2146 2188 1.465794 GGGCTAACCACGGCAAATAA 58.534 50.000 0.00 0.00 39.85 1.40
2147 2189 2.028876 GGGCTAACCACGGCAAATAAT 58.971 47.619 0.00 0.00 39.85 1.28
2148 2190 2.429250 GGGCTAACCACGGCAAATAATT 59.571 45.455 0.00 0.00 39.85 1.40
2149 2191 3.490249 GGGCTAACCACGGCAAATAATTC 60.490 47.826 0.00 0.00 39.85 2.17
2150 2192 3.490249 GGCTAACCACGGCAAATAATTCC 60.490 47.826 0.00 0.00 35.26 3.01
2151 2193 3.380320 GCTAACCACGGCAAATAATTCCT 59.620 43.478 0.00 0.00 0.00 3.36
2152 2194 4.142249 GCTAACCACGGCAAATAATTCCTT 60.142 41.667 0.00 0.00 0.00 3.36
2153 2195 4.882842 AACCACGGCAAATAATTCCTTT 57.117 36.364 0.00 0.00 0.00 3.11
2154 2196 4.882842 ACCACGGCAAATAATTCCTTTT 57.117 36.364 0.00 0.00 0.00 2.27
2155 2197 4.565022 ACCACGGCAAATAATTCCTTTTG 58.435 39.130 0.00 4.79 36.21 2.44
2156 2198 4.282195 ACCACGGCAAATAATTCCTTTTGA 59.718 37.500 10.82 0.00 35.34 2.69
2157 2199 4.625311 CCACGGCAAATAATTCCTTTTGAC 59.375 41.667 10.82 7.90 37.47 3.18
2158 2200 5.469479 CACGGCAAATAATTCCTTTTGACT 58.531 37.500 10.82 0.00 38.45 3.41
2159 2201 5.572896 CACGGCAAATAATTCCTTTTGACTC 59.427 40.000 10.82 2.23 38.45 3.36
2160 2202 5.476945 ACGGCAAATAATTCCTTTTGACTCT 59.523 36.000 10.82 0.00 38.45 3.24
2161 2203 5.801947 CGGCAAATAATTCCTTTTGACTCTG 59.198 40.000 10.82 0.00 38.45 3.35
2162 2204 6.349280 CGGCAAATAATTCCTTTTGACTCTGA 60.349 38.462 10.82 0.00 38.45 3.27
2163 2205 7.031975 GGCAAATAATTCCTTTTGACTCTGAG 58.968 38.462 2.45 2.45 37.76 3.35
2164 2206 7.309438 GGCAAATAATTCCTTTTGACTCTGAGT 60.309 37.037 10.66 10.66 37.76 3.41
2174 2216 3.808834 TGACTCTGAGTAGTTGGGAGA 57.191 47.619 10.86 0.00 0.00 3.71
2183 2225 2.093973 AGTAGTTGGGAGAATCAGCACG 60.094 50.000 0.00 0.00 36.25 5.34
2184 2226 0.976641 AGTTGGGAGAATCAGCACGA 59.023 50.000 0.00 0.00 36.25 4.35
2191 2233 1.996191 GAGAATCAGCACGACACCTTC 59.004 52.381 0.00 0.00 33.17 3.46
2195 2237 1.595109 CAGCACGACACCTTCTGCA 60.595 57.895 0.00 0.00 33.31 4.41
2196 2238 1.146041 AGCACGACACCTTCTGCAA 59.854 52.632 0.00 0.00 33.31 4.08
2204 2291 1.064758 ACACCTTCTGCAACTTCACCA 60.065 47.619 0.00 0.00 0.00 4.17
2206 2293 2.024414 ACCTTCTGCAACTTCACCAAC 58.976 47.619 0.00 0.00 0.00 3.77
2209 2296 2.418368 TCTGCAACTTCACCAACTGT 57.582 45.000 0.00 0.00 0.00 3.55
2213 2300 2.353269 TGCAACTTCACCAACTGTAACG 59.647 45.455 0.00 0.00 0.00 3.18
2217 2304 0.881159 TTCACCAACTGTAACGGGCG 60.881 55.000 0.00 0.00 0.00 6.13
2231 2318 3.865830 GGCGCTCGGTAAAGCAGC 61.866 66.667 7.64 1.24 42.62 5.25
2245 2332 1.776662 AGCAGCGGATTCCAGTAGTA 58.223 50.000 3.09 0.00 0.00 1.82
2246 2333 1.683917 AGCAGCGGATTCCAGTAGTAG 59.316 52.381 3.09 0.00 0.00 2.57
2255 2342 4.383118 GGATTCCAGTAGTAGCAAGAGCAA 60.383 45.833 0.00 0.00 45.49 3.91
2260 2347 3.937706 CAGTAGTAGCAAGAGCAAAGCAT 59.062 43.478 0.00 0.00 45.49 3.79
2262 2349 5.233902 CAGTAGTAGCAAGAGCAAAGCATAG 59.766 44.000 0.00 0.00 45.49 2.23
2271 2358 6.441274 CAAGAGCAAAGCATAGAAAACAGAA 58.559 36.000 0.00 0.00 0.00 3.02
2274 2361 8.340618 AGAGCAAAGCATAGAAAACAGAATAA 57.659 30.769 0.00 0.00 0.00 1.40
2308 2395 5.068460 GGAGACACACAAGCTCTATATGTCT 59.932 44.000 16.17 16.17 45.95 3.41
2309 2396 5.900425 AGACACACAAGCTCTATATGTCTG 58.100 41.667 15.71 4.95 42.70 3.51
2336 2424 2.763448 CGAATGCCCCCTTTATTTTCCA 59.237 45.455 0.00 0.00 0.00 3.53
2346 2434 6.127054 CCCCCTTTATTTTCCATTCCTCTTTC 60.127 42.308 0.00 0.00 0.00 2.62
2347 2435 6.440328 CCCCTTTATTTTCCATTCCTCTTTCA 59.560 38.462 0.00 0.00 0.00 2.69
2348 2436 7.038373 CCCCTTTATTTTCCATTCCTCTTTCAA 60.038 37.037 0.00 0.00 0.00 2.69
2349 2437 8.542926 CCCTTTATTTTCCATTCCTCTTTCAAT 58.457 33.333 0.00 0.00 0.00 2.57
2350 2438 9.948964 CCTTTATTTTCCATTCCTCTTTCAATT 57.051 29.630 0.00 0.00 0.00 2.32
2354 2442 7.781324 TTTTCCATTCCTCTTTCAATTAGCT 57.219 32.000 0.00 0.00 0.00 3.32
2355 2443 6.764308 TTCCATTCCTCTTTCAATTAGCTG 57.236 37.500 0.00 0.00 0.00 4.24
2356 2444 4.641989 TCCATTCCTCTTTCAATTAGCTGC 59.358 41.667 0.00 0.00 0.00 5.25
2357 2445 4.202090 CCATTCCTCTTTCAATTAGCTGCC 60.202 45.833 0.00 0.00 0.00 4.85
2358 2446 4.307032 TTCCTCTTTCAATTAGCTGCCT 57.693 40.909 0.00 0.00 0.00 4.75
2359 2447 3.614092 TCCTCTTTCAATTAGCTGCCTG 58.386 45.455 0.00 0.00 0.00 4.85
2360 2448 2.686915 CCTCTTTCAATTAGCTGCCTGG 59.313 50.000 0.00 0.00 0.00 4.45
2361 2449 2.094675 TCTTTCAATTAGCTGCCTGGC 58.905 47.619 12.87 12.87 0.00 4.85
2362 2450 1.135721 CTTTCAATTAGCTGCCTGGCC 59.864 52.381 17.53 0.00 0.00 5.36
2363 2451 0.039472 TTCAATTAGCTGCCTGGCCA 59.961 50.000 17.53 4.71 0.00 5.36
2364 2452 0.680921 TCAATTAGCTGCCTGGCCAC 60.681 55.000 17.53 8.16 0.00 5.01
2365 2453 0.966875 CAATTAGCTGCCTGGCCACA 60.967 55.000 17.53 0.00 0.00 4.17
2366 2454 0.032813 AATTAGCTGCCTGGCCACAT 60.033 50.000 17.53 2.00 0.00 3.21
2367 2455 0.846015 ATTAGCTGCCTGGCCACATA 59.154 50.000 17.53 0.97 0.00 2.29
2368 2456 0.846015 TTAGCTGCCTGGCCACATAT 59.154 50.000 17.53 0.00 0.00 1.78
2369 2457 0.109153 TAGCTGCCTGGCCACATATG 59.891 55.000 17.53 0.00 0.00 1.78
2370 2458 1.454479 GCTGCCTGGCCACATATGT 60.454 57.895 17.53 1.41 0.00 2.29
2371 2459 1.039233 GCTGCCTGGCCACATATGTT 61.039 55.000 17.53 0.00 0.00 2.71
2372 2460 0.742505 CTGCCTGGCCACATATGTTG 59.257 55.000 17.53 3.80 0.00 3.33
2373 2461 0.039472 TGCCTGGCCACATATGTTGT 59.961 50.000 17.53 0.00 39.91 3.32
2386 2474 6.882610 ACATATGTTGTGCCTATTACATGG 57.117 37.500 1.41 0.00 37.11 3.66
2387 2475 5.769662 ACATATGTTGTGCCTATTACATGGG 59.230 40.000 1.41 0.00 37.11 4.00
2388 2476 3.730215 TGTTGTGCCTATTACATGGGT 57.270 42.857 0.00 0.00 32.72 4.51
2389 2477 4.040936 TGTTGTGCCTATTACATGGGTT 57.959 40.909 0.00 0.00 32.72 4.11
2390 2478 5.180810 TGTTGTGCCTATTACATGGGTTA 57.819 39.130 0.00 0.00 32.72 2.85
2391 2479 5.761205 TGTTGTGCCTATTACATGGGTTAT 58.239 37.500 0.00 0.00 32.72 1.89
2392 2480 6.191315 TGTTGTGCCTATTACATGGGTTATT 58.809 36.000 0.00 0.00 32.72 1.40
2393 2481 7.347252 TGTTGTGCCTATTACATGGGTTATTA 58.653 34.615 0.00 0.00 32.72 0.98
2394 2482 7.834681 TGTTGTGCCTATTACATGGGTTATTAA 59.165 33.333 0.00 0.00 32.72 1.40
2395 2483 8.349983 GTTGTGCCTATTACATGGGTTATTAAG 58.650 37.037 0.00 0.00 32.72 1.85
2396 2484 7.807198 TGTGCCTATTACATGGGTTATTAAGA 58.193 34.615 0.00 0.00 32.72 2.10
2397 2485 7.936847 TGTGCCTATTACATGGGTTATTAAGAG 59.063 37.037 0.00 0.00 32.72 2.85
2398 2486 7.390718 GTGCCTATTACATGGGTTATTAAGAGG 59.609 40.741 7.48 7.48 36.43 3.69
2399 2487 7.073215 TGCCTATTACATGGGTTATTAAGAGGT 59.927 37.037 11.59 0.00 35.97 3.85
2400 2488 7.606839 GCCTATTACATGGGTTATTAAGAGGTC 59.393 40.741 11.59 3.91 35.97 3.85
2401 2489 8.881262 CCTATTACATGGGTTATTAAGAGGTCT 58.119 37.037 0.00 0.00 31.16 3.85
2402 2490 9.712305 CTATTACATGGGTTATTAAGAGGTCTG 57.288 37.037 0.00 0.00 0.00 3.51
2403 2491 4.781934 ACATGGGTTATTAAGAGGTCTGC 58.218 43.478 0.00 0.00 0.00 4.26
2404 2492 4.475016 ACATGGGTTATTAAGAGGTCTGCT 59.525 41.667 0.00 0.00 0.00 4.24
2405 2493 5.044846 ACATGGGTTATTAAGAGGTCTGCTT 60.045 40.000 0.00 0.00 0.00 3.91
2406 2494 5.099042 TGGGTTATTAAGAGGTCTGCTTC 57.901 43.478 0.00 0.00 0.00 3.86
2407 2495 4.120589 GGGTTATTAAGAGGTCTGCTTCG 58.879 47.826 0.00 0.00 0.00 3.79
2408 2496 4.120589 GGTTATTAAGAGGTCTGCTTCGG 58.879 47.826 0.00 0.00 0.00 4.30
2409 2497 4.382793 GGTTATTAAGAGGTCTGCTTCGGT 60.383 45.833 0.00 0.00 0.00 4.69
2410 2498 5.163478 GGTTATTAAGAGGTCTGCTTCGGTA 60.163 44.000 0.00 0.00 0.00 4.02
2411 2499 3.863142 TTAAGAGGTCTGCTTCGGTAC 57.137 47.619 0.00 0.00 0.00 3.34
2412 2500 1.629043 AAGAGGTCTGCTTCGGTACA 58.371 50.000 0.00 0.00 0.00 2.90
2413 2501 0.889306 AGAGGTCTGCTTCGGTACAC 59.111 55.000 0.00 0.00 0.00 2.90
2414 2502 0.108756 GAGGTCTGCTTCGGTACACC 60.109 60.000 0.00 0.00 0.00 4.16
2415 2503 1.079336 GGTCTGCTTCGGTACACCC 60.079 63.158 0.00 0.00 0.00 4.61
2416 2504 1.079336 GTCTGCTTCGGTACACCCC 60.079 63.158 0.00 0.00 0.00 4.95
2417 2505 2.267961 CTGCTTCGGTACACCCCC 59.732 66.667 0.00 0.00 0.00 5.40
2440 2528 5.827666 CCTTAACGTATAAGGGCATTTTGG 58.172 41.667 20.16 2.54 40.20 3.28
2441 2529 5.221165 CCTTAACGTATAAGGGCATTTTGGG 60.221 44.000 20.16 2.04 40.20 4.12
2442 2530 2.028876 ACGTATAAGGGCATTTTGGGC 58.971 47.619 0.00 0.00 0.00 5.36
2443 2531 2.028130 CGTATAAGGGCATTTTGGGCA 58.972 47.619 0.00 0.00 34.52 5.36
2444 2532 2.627699 CGTATAAGGGCATTTTGGGCAT 59.372 45.455 0.00 0.00 34.52 4.40
2445 2533 3.823873 CGTATAAGGGCATTTTGGGCATA 59.176 43.478 0.00 0.00 34.52 3.14
2446 2534 4.320935 CGTATAAGGGCATTTTGGGCATAC 60.321 45.833 0.00 0.00 34.52 2.39
2447 2535 0.823460 AAGGGCATTTTGGGCATACG 59.177 50.000 0.00 0.00 34.52 3.06
2448 2536 1.042559 AGGGCATTTTGGGCATACGG 61.043 55.000 0.00 0.00 34.52 4.02
2449 2537 1.326951 GGGCATTTTGGGCATACGGT 61.327 55.000 0.00 0.00 34.52 4.83
2450 2538 0.179113 GGCATTTTGGGCATACGGTG 60.179 55.000 0.00 0.00 0.00 4.94
2464 2552 2.184385 ACGGTGCTTAACGTATCTCG 57.816 50.000 0.00 0.00 42.15 4.04
2465 2553 0.844503 CGGTGCTTAACGTATCTCGC 59.155 55.000 0.00 0.00 44.19 5.03
2466 2554 0.844503 GGTGCTTAACGTATCTCGCG 59.155 55.000 0.00 0.00 44.19 5.87
2467 2555 0.226484 GTGCTTAACGTATCTCGCGC 59.774 55.000 0.00 0.00 44.19 6.86
2468 2556 0.868602 TGCTTAACGTATCTCGCGCC 60.869 55.000 0.00 0.00 44.19 6.53
2469 2557 1.863110 GCTTAACGTATCTCGCGCCG 61.863 60.000 0.00 0.00 44.19 6.46
2470 2558 0.590732 CTTAACGTATCTCGCGCCGT 60.591 55.000 0.00 0.51 44.19 5.68
2471 2559 0.655208 TTAACGTATCTCGCGCCGTA 59.345 50.000 0.00 0.00 44.19 4.02
2472 2560 0.867746 TAACGTATCTCGCGCCGTAT 59.132 50.000 0.00 0.00 44.19 3.06
2473 2561 0.659417 AACGTATCTCGCGCCGTATG 60.659 55.000 0.00 1.64 44.19 2.39
2474 2562 2.426183 CGTATCTCGCGCCGTATGC 61.426 63.158 0.00 0.00 0.00 3.14
2486 2574 2.280524 GTATGCGGCGTGCCCATA 60.281 61.111 9.37 14.29 45.60 2.74
2487 2575 2.280524 TATGCGGCGTGCCCATAC 60.281 61.111 9.37 0.95 45.60 2.39
2488 2576 3.095347 TATGCGGCGTGCCCATACA 62.095 57.895 9.37 5.75 45.60 2.29
2489 2577 2.987282 TATGCGGCGTGCCCATACAG 62.987 60.000 9.37 0.00 45.60 2.74
2491 2579 4.467084 CGGCGTGCCCATACAGGT 62.467 66.667 5.08 0.00 34.66 4.00
2492 2580 2.904905 GGCGTGCCCATACAGGTA 59.095 61.111 0.00 0.00 34.66 3.08
2493 2581 1.227556 GGCGTGCCCATACAGGTAG 60.228 63.158 0.00 0.00 34.66 3.18
2494 2582 1.682451 GGCGTGCCCATACAGGTAGA 61.682 60.000 0.00 0.00 34.66 2.59
2495 2583 0.249489 GCGTGCCCATACAGGTAGAG 60.249 60.000 0.00 0.00 34.66 2.43
2496 2584 0.249489 CGTGCCCATACAGGTAGAGC 60.249 60.000 0.00 0.00 34.66 4.09
2497 2585 0.106894 GTGCCCATACAGGTAGAGCC 59.893 60.000 0.00 0.00 34.66 4.70
2498 2586 1.367840 GCCCATACAGGTAGAGCCG 59.632 63.158 0.00 0.00 43.70 5.52
2499 2587 1.113517 GCCCATACAGGTAGAGCCGA 61.114 60.000 0.00 0.00 43.70 5.54
2500 2588 0.962489 CCCATACAGGTAGAGCCGAG 59.038 60.000 0.00 0.00 43.70 4.63
2501 2589 0.315568 CCATACAGGTAGAGCCGAGC 59.684 60.000 0.00 0.00 43.70 5.03
2502 2590 0.039978 CATACAGGTAGAGCCGAGCG 60.040 60.000 0.00 0.00 43.70 5.03
2503 2591 1.797211 ATACAGGTAGAGCCGAGCGC 61.797 60.000 0.00 0.00 43.70 5.92
2504 2592 3.826754 CAGGTAGAGCCGAGCGCA 61.827 66.667 11.47 0.00 43.70 6.09
2505 2593 3.827898 AGGTAGAGCCGAGCGCAC 61.828 66.667 11.47 0.96 43.70 5.34
2533 2621 4.664677 GATACGGCCGGCTCGCAT 62.665 66.667 31.76 24.23 0.00 4.73
2534 2622 4.664677 ATACGGCCGGCTCGCATC 62.665 66.667 31.76 12.01 0.00 3.91
2538 2626 4.971125 GGCCGGCTCGCATCTACC 62.971 72.222 28.56 0.41 0.00 3.18
2539 2627 4.971125 GCCGGCTCGCATCTACCC 62.971 72.222 22.15 0.00 0.00 3.69
2540 2628 4.301027 CCGGCTCGCATCTACCCC 62.301 72.222 0.00 0.00 0.00 4.95
2541 2629 4.301027 CGGCTCGCATCTACCCCC 62.301 72.222 0.00 0.00 0.00 5.40
2542 2630 2.844839 GGCTCGCATCTACCCCCT 60.845 66.667 0.00 0.00 0.00 4.79
2543 2631 2.737830 GCTCGCATCTACCCCCTC 59.262 66.667 0.00 0.00 0.00 4.30
2544 2632 2.873525 GCTCGCATCTACCCCCTCC 61.874 68.421 0.00 0.00 0.00 4.30
2545 2633 2.122989 TCGCATCTACCCCCTCCC 60.123 66.667 0.00 0.00 0.00 4.30
2546 2634 3.616721 CGCATCTACCCCCTCCCG 61.617 72.222 0.00 0.00 0.00 5.14
2547 2635 2.446036 GCATCTACCCCCTCCCGT 60.446 66.667 0.00 0.00 0.00 5.28
2548 2636 2.508751 GCATCTACCCCCTCCCGTC 61.509 68.421 0.00 0.00 0.00 4.79
2549 2637 2.197875 ATCTACCCCCTCCCGTCG 59.802 66.667 0.00 0.00 0.00 5.12
2550 2638 4.828296 TCTACCCCCTCCCGTCGC 62.828 72.222 0.00 0.00 0.00 5.19
2556 2644 4.367023 CCCTCCCGTCGCGTGAAA 62.367 66.667 5.77 0.00 0.00 2.69
2557 2645 2.356553 CCTCCCGTCGCGTGAAAA 60.357 61.111 5.77 0.00 0.00 2.29
2558 2646 1.957186 CCTCCCGTCGCGTGAAAAA 60.957 57.895 5.77 0.00 0.00 1.94
2591 2679 2.824041 GTTGATCACGCGGCCCAT 60.824 61.111 12.47 0.00 0.00 4.00
2592 2680 2.045438 TTGATCACGCGGCCCATT 60.045 55.556 12.47 0.00 0.00 3.16
2593 2681 2.112198 TTGATCACGCGGCCCATTC 61.112 57.895 12.47 0.00 0.00 2.67
2594 2682 3.279875 GATCACGCGGCCCATTCC 61.280 66.667 12.47 0.00 0.00 3.01
2595 2683 4.108299 ATCACGCGGCCCATTCCA 62.108 61.111 12.47 0.00 0.00 3.53
2596 2684 3.636929 ATCACGCGGCCCATTCCAA 62.637 57.895 12.47 0.00 0.00 3.53
2597 2685 4.114997 CACGCGGCCCATTCCAAC 62.115 66.667 12.47 0.00 0.00 3.77
2600 2688 3.810896 GCGGCCCATTCCAACGTC 61.811 66.667 0.00 0.00 0.00 4.34
2601 2689 3.496131 CGGCCCATTCCAACGTCG 61.496 66.667 0.00 0.00 0.00 5.12
2602 2690 3.810896 GGCCCATTCCAACGTCGC 61.811 66.667 0.00 0.00 0.00 5.19
2603 2691 3.810896 GCCCATTCCAACGTCGCC 61.811 66.667 0.00 0.00 0.00 5.54
2604 2692 3.131478 CCCATTCCAACGTCGCCC 61.131 66.667 0.00 0.00 0.00 6.13
2605 2693 3.131478 CCATTCCAACGTCGCCCC 61.131 66.667 0.00 0.00 0.00 5.80
2606 2694 3.496131 CATTCCAACGTCGCCCCG 61.496 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.474651 TCTGGGATGCTTCCTATCAAGAAA 59.525 41.667 17.48 0.00 42.20 2.52
164 167 7.044181 TGAGAGGTCTAATGATGCTAAACTTG 58.956 38.462 0.00 0.00 0.00 3.16
248 251 4.156556 TGCTATTGAATGACAGGTTCAAGC 59.843 41.667 9.44 8.62 45.54 4.01
258 261 4.749099 CCTGCTAGACTGCTATTGAATGAC 59.251 45.833 0.00 0.00 0.00 3.06
269 272 1.943340 GTATTTGGCCTGCTAGACTGC 59.057 52.381 3.32 0.00 0.00 4.40
270 273 2.565841 GGTATTTGGCCTGCTAGACTG 58.434 52.381 3.32 0.00 0.00 3.51
271 274 1.139058 CGGTATTTGGCCTGCTAGACT 59.861 52.381 3.32 0.00 0.00 3.24
302 305 2.224523 TGCGAGGTGAGGTTTGAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
340 343 1.742768 GGGCTCCACATAGACGAGG 59.257 63.158 0.00 0.00 0.00 4.63
364 367 5.106712 TGTCGAAGCATGTTGGAAATCTTAC 60.107 40.000 0.00 0.00 0.00 2.34
450 453 1.226184 GGAAATAACAACGGCGCCG 60.226 57.895 44.88 44.88 46.03 6.46
489 492 7.510549 TTTGATGTCTCCCTTCTTAAGTTTG 57.489 36.000 1.63 0.00 0.00 2.93
570 573 6.811170 CACTAAAATTATTGGTGGCGTGAATT 59.189 34.615 8.15 0.00 0.00 2.17
693 696 1.210204 AGCTTTGGATGGCCTCCTCA 61.210 55.000 18.49 4.14 45.21 3.86
715 718 2.645838 AGCACTTGACACTCCACATT 57.354 45.000 0.00 0.00 0.00 2.71
872 875 2.763448 CCTAGTCTCTCAAGGAACCCTG 59.237 54.545 0.00 0.00 32.13 4.45
911 914 2.632512 TGCAGATACTCCATCGCCATAA 59.367 45.455 0.00 0.00 38.81 1.90
945 948 3.900966 TCACAGTGCAATATCAGCTCT 57.099 42.857 0.00 1.33 36.37 4.09
966 969 1.412079 ACACATTGCTGGGCTTCAAA 58.588 45.000 0.00 0.00 0.00 2.69
975 978 3.063670 TCGTCAAACAACACATTGCTG 57.936 42.857 0.00 0.00 39.66 4.41
1041 1044 2.941453 TCACGGAGTTGTCATCTAGC 57.059 50.000 0.00 0.00 41.61 3.42
1057 1060 0.236711 GGCATGCTCGCACATATCAC 59.763 55.000 18.92 0.00 0.00 3.06
1106 1109 8.567285 AACATAACAAGAGCAAGCTAATTAGT 57.433 30.769 13.91 0.00 0.00 2.24
1358 1379 1.909700 AATGCGTGATGAACCCACTT 58.090 45.000 0.00 0.00 32.64 3.16
1510 1532 1.070821 CACGCATTGTCATCGTCTGT 58.929 50.000 0.00 0.00 33.84 3.41
1515 1537 1.267682 CCACATCACGCATTGTCATCG 60.268 52.381 0.00 0.00 0.00 3.84
1552 1574 1.236616 TGGTGTGCTCGGCTTTGATG 61.237 55.000 0.00 0.00 0.00 3.07
1587 1612 1.568612 CCGTGCTGCACTAGTTGGTG 61.569 60.000 28.04 11.44 39.91 4.17
1588 1613 1.301716 CCGTGCTGCACTAGTTGGT 60.302 57.895 28.04 0.00 31.34 3.67
1605 1630 3.559238 AGCACATGAAAATCGTTCACC 57.441 42.857 0.00 0.00 0.00 4.02
1684 1709 8.967664 AAGTTATGTGGTTGTTCTAAGTACAA 57.032 30.769 0.00 0.00 33.37 2.41
1717 1744 4.713553 TGCAACTTATTTCAGTCCTGACA 58.286 39.130 0.00 0.00 39.66 3.58
1719 1746 5.183713 CCAATGCAACTTATTTCAGTCCTGA 59.816 40.000 0.00 0.00 37.91 3.86
1902 1944 3.944015 CAGAGATCCCAAATGTGAACTCC 59.056 47.826 0.80 0.00 0.00 3.85
1917 1959 5.726980 AACAGCTAGGATGATCAGAGATC 57.273 43.478 0.09 0.15 0.00 2.75
1935 1977 0.519077 GGCCAAGCGAGAGAAAACAG 59.481 55.000 0.00 0.00 0.00 3.16
1984 2026 1.308069 ATTGCTGTGATGACGCCCAC 61.308 55.000 0.00 0.00 0.00 4.61
2045 2087 9.203421 CAATGGATATACAACATGTACACGTAT 57.797 33.333 0.00 7.03 35.42 3.06
2046 2088 8.198778 ACAATGGATATACAACATGTACACGTA 58.801 33.333 0.00 0.00 35.42 3.57
2047 2089 7.045416 ACAATGGATATACAACATGTACACGT 58.955 34.615 0.00 0.00 35.42 4.49
2048 2090 7.477144 ACAATGGATATACAACATGTACACG 57.523 36.000 0.00 0.00 35.42 4.49
2053 2095 9.866655 AGGAAATACAATGGATATACAACATGT 57.133 29.630 8.80 8.80 0.00 3.21
2056 2098 9.693739 ACAAGGAAATACAATGGATATACAACA 57.306 29.630 0.00 0.00 0.00 3.33
2059 2101 9.693739 ACAACAAGGAAATACAATGGATATACA 57.306 29.630 0.00 0.00 0.00 2.29
2062 2104 9.693739 TGTACAACAAGGAAATACAATGGATAT 57.306 29.630 0.00 0.00 0.00 1.63
2063 2105 9.521841 TTGTACAACAAGGAAATACAATGGATA 57.478 29.630 3.59 0.00 32.34 2.59
2064 2106 8.415950 TTGTACAACAAGGAAATACAATGGAT 57.584 30.769 3.59 0.00 32.34 3.41
2065 2107 7.825331 TTGTACAACAAGGAAATACAATGGA 57.175 32.000 3.59 0.00 32.34 3.41
2076 2118 8.154203 TGATTAGATCAACTTGTACAACAAGGA 58.846 33.333 20.52 11.41 45.60 3.36
2077 2119 8.322906 TGATTAGATCAACTTGTACAACAAGG 57.677 34.615 20.52 7.10 45.60 3.61
2095 2137 8.796475 GGCTGGCATCTTTTTATATTGATTAGA 58.204 33.333 0.00 0.00 0.00 2.10
2096 2138 7.752239 CGGCTGGCATCTTTTTATATTGATTAG 59.248 37.037 1.08 0.00 0.00 1.73
2097 2139 7.309133 CCGGCTGGCATCTTTTTATATTGATTA 60.309 37.037 0.00 0.00 0.00 1.75
2098 2140 6.449698 CGGCTGGCATCTTTTTATATTGATT 58.550 36.000 1.08 0.00 0.00 2.57
2099 2141 5.047802 CCGGCTGGCATCTTTTTATATTGAT 60.048 40.000 0.00 0.00 0.00 2.57
2100 2142 4.278170 CCGGCTGGCATCTTTTTATATTGA 59.722 41.667 0.00 0.00 0.00 2.57
2101 2143 4.037923 ACCGGCTGGCATCTTTTTATATTG 59.962 41.667 12.89 0.00 39.70 1.90
2102 2144 4.215109 ACCGGCTGGCATCTTTTTATATT 58.785 39.130 12.89 0.00 39.70 1.28
2103 2145 3.832527 ACCGGCTGGCATCTTTTTATAT 58.167 40.909 12.89 0.00 39.70 0.86
2104 2146 3.290948 ACCGGCTGGCATCTTTTTATA 57.709 42.857 12.89 0.00 39.70 0.98
2105 2147 2.143876 ACCGGCTGGCATCTTTTTAT 57.856 45.000 12.89 0.00 39.70 1.40
2106 2148 1.543802 CAACCGGCTGGCATCTTTTTA 59.456 47.619 12.89 0.00 39.70 1.52
2107 2149 0.318120 CAACCGGCTGGCATCTTTTT 59.682 50.000 12.89 0.00 39.70 1.94
2108 2150 1.535204 CCAACCGGCTGGCATCTTTT 61.535 55.000 11.77 0.00 39.70 2.27
2109 2151 1.978617 CCAACCGGCTGGCATCTTT 60.979 57.895 11.77 0.00 39.70 2.52
2110 2152 2.361610 CCAACCGGCTGGCATCTT 60.362 61.111 11.77 0.00 39.70 2.40
2111 2153 4.431131 CCCAACCGGCTGGCATCT 62.431 66.667 19.01 0.00 39.70 2.90
2122 2164 2.360726 CCGTGGTTAGCCCCAACC 60.361 66.667 5.70 5.70 46.90 3.77
2123 2165 3.060000 GCCGTGGTTAGCCCCAAC 61.060 66.667 0.00 0.00 35.92 3.77
2124 2166 2.642183 TTTGCCGTGGTTAGCCCCAA 62.642 55.000 0.00 0.00 35.92 4.12
2125 2167 2.433646 ATTTGCCGTGGTTAGCCCCA 62.434 55.000 0.00 0.00 0.00 4.96
2126 2168 0.394625 TATTTGCCGTGGTTAGCCCC 60.395 55.000 0.00 0.00 0.00 5.80
2127 2169 1.465794 TTATTTGCCGTGGTTAGCCC 58.534 50.000 0.00 0.00 0.00 5.19
2128 2170 3.490249 GGAATTATTTGCCGTGGTTAGCC 60.490 47.826 0.00 0.00 0.00 3.93
2129 2171 3.380320 AGGAATTATTTGCCGTGGTTAGC 59.620 43.478 0.00 0.00 0.00 3.09
2130 2172 5.576447 AAGGAATTATTTGCCGTGGTTAG 57.424 39.130 0.00 0.00 0.00 2.34
2131 2173 5.986501 AAAGGAATTATTTGCCGTGGTTA 57.013 34.783 0.00 0.00 0.00 2.85
2132 2174 4.882842 AAAGGAATTATTTGCCGTGGTT 57.117 36.364 0.00 0.00 0.00 3.67
2133 2175 4.282195 TCAAAAGGAATTATTTGCCGTGGT 59.718 37.500 6.14 0.00 36.66 4.16
2134 2176 4.625311 GTCAAAAGGAATTATTTGCCGTGG 59.375 41.667 6.14 0.00 36.66 4.94
2135 2177 5.469479 AGTCAAAAGGAATTATTTGCCGTG 58.531 37.500 6.14 0.00 36.66 4.94
2136 2178 5.476945 AGAGTCAAAAGGAATTATTTGCCGT 59.523 36.000 0.00 0.00 36.66 5.68
2137 2179 5.801947 CAGAGTCAAAAGGAATTATTTGCCG 59.198 40.000 0.00 0.00 36.66 5.69
2138 2180 6.924111 TCAGAGTCAAAAGGAATTATTTGCC 58.076 36.000 0.00 0.00 36.66 4.52
2139 2181 7.597386 ACTCAGAGTCAAAAGGAATTATTTGC 58.403 34.615 0.00 3.32 36.66 3.68
2143 2185 9.442047 CAACTACTCAGAGTCAAAAGGAATTAT 57.558 33.333 6.27 0.00 0.00 1.28
2144 2186 7.878127 CCAACTACTCAGAGTCAAAAGGAATTA 59.122 37.037 6.27 0.00 0.00 1.40
2145 2187 6.712547 CCAACTACTCAGAGTCAAAAGGAATT 59.287 38.462 6.27 0.00 0.00 2.17
2146 2188 6.234177 CCAACTACTCAGAGTCAAAAGGAAT 58.766 40.000 6.27 0.00 0.00 3.01
2147 2189 5.454755 CCCAACTACTCAGAGTCAAAAGGAA 60.455 44.000 6.27 0.00 0.00 3.36
2148 2190 4.040461 CCCAACTACTCAGAGTCAAAAGGA 59.960 45.833 6.27 0.00 0.00 3.36
2149 2191 4.040461 TCCCAACTACTCAGAGTCAAAAGG 59.960 45.833 6.27 4.51 0.00 3.11
2150 2192 5.011125 TCTCCCAACTACTCAGAGTCAAAAG 59.989 44.000 6.27 1.07 0.00 2.27
2151 2193 4.899457 TCTCCCAACTACTCAGAGTCAAAA 59.101 41.667 6.27 0.00 0.00 2.44
2152 2194 4.480115 TCTCCCAACTACTCAGAGTCAAA 58.520 43.478 6.27 0.00 0.00 2.69
2153 2195 4.114015 TCTCCCAACTACTCAGAGTCAA 57.886 45.455 6.27 0.00 0.00 3.18
2154 2196 3.808834 TCTCCCAACTACTCAGAGTCA 57.191 47.619 6.27 0.00 0.00 3.41
2155 2197 4.707448 TGATTCTCCCAACTACTCAGAGTC 59.293 45.833 6.27 0.00 0.00 3.36
2156 2198 4.678256 TGATTCTCCCAACTACTCAGAGT 58.322 43.478 8.50 8.50 0.00 3.24
2157 2199 4.441356 GCTGATTCTCCCAACTACTCAGAG 60.441 50.000 0.00 0.00 32.36 3.35
2158 2200 3.449018 GCTGATTCTCCCAACTACTCAGA 59.551 47.826 0.00 0.00 32.36 3.27
2159 2201 3.196469 TGCTGATTCTCCCAACTACTCAG 59.804 47.826 0.00 0.00 33.49 3.35
2160 2202 3.055819 GTGCTGATTCTCCCAACTACTCA 60.056 47.826 0.00 0.00 0.00 3.41
2161 2203 3.526534 GTGCTGATTCTCCCAACTACTC 58.473 50.000 0.00 0.00 0.00 2.59
2162 2204 2.093973 CGTGCTGATTCTCCCAACTACT 60.094 50.000 0.00 0.00 0.00 2.57
2163 2205 2.094182 TCGTGCTGATTCTCCCAACTAC 60.094 50.000 0.00 0.00 0.00 2.73
2164 2206 2.094182 GTCGTGCTGATTCTCCCAACTA 60.094 50.000 0.00 0.00 0.00 2.24
2174 2216 1.800805 CAGAAGGTGTCGTGCTGATT 58.199 50.000 0.00 0.00 0.00 2.57
2183 2225 1.604278 GGTGAAGTTGCAGAAGGTGTC 59.396 52.381 0.00 0.00 0.00 3.67
2184 2226 1.064758 TGGTGAAGTTGCAGAAGGTGT 60.065 47.619 0.00 0.00 0.00 4.16
2191 2233 3.546020 CGTTACAGTTGGTGAAGTTGCAG 60.546 47.826 0.00 0.00 0.00 4.41
2195 2237 2.567985 CCCGTTACAGTTGGTGAAGTT 58.432 47.619 0.00 0.00 0.00 2.66
2196 2238 1.812708 GCCCGTTACAGTTGGTGAAGT 60.813 52.381 0.00 0.00 0.00 3.01
2204 2291 2.431942 CGAGCGCCCGTTACAGTT 60.432 61.111 1.97 0.00 0.00 3.16
2206 2293 2.546645 TTACCGAGCGCCCGTTACAG 62.547 60.000 11.25 0.00 0.00 2.74
2209 2296 1.153784 CTTTACCGAGCGCCCGTTA 60.154 57.895 11.25 0.00 0.00 3.18
2213 2300 3.195698 CTGCTTTACCGAGCGCCC 61.196 66.667 2.29 0.00 45.64 6.13
2217 2304 1.090052 AATCCGCTGCTTTACCGAGC 61.090 55.000 0.00 0.00 43.00 5.03
2231 2318 3.797184 GCTCTTGCTACTACTGGAATCCG 60.797 52.174 0.00 0.00 36.03 4.18
2245 2332 4.279169 TGTTTTCTATGCTTTGCTCTTGCT 59.721 37.500 0.00 0.00 40.48 3.91
2246 2333 4.549458 TGTTTTCTATGCTTTGCTCTTGC 58.451 39.130 0.00 0.00 40.20 4.01
2271 2358 7.119846 GCTTGTGTGTCTCCTCTGTTTTATTAT 59.880 37.037 0.00 0.00 0.00 1.28
2274 2361 4.757149 GCTTGTGTGTCTCCTCTGTTTTAT 59.243 41.667 0.00 0.00 0.00 1.40
2336 2424 4.643784 CAGGCAGCTAATTGAAAGAGGAAT 59.356 41.667 0.00 0.00 0.00 3.01
2346 2434 0.966875 TGTGGCCAGGCAGCTAATTG 60.967 55.000 15.19 0.00 0.00 2.32
2347 2435 0.032813 ATGTGGCCAGGCAGCTAATT 60.033 50.000 15.19 0.00 0.00 1.40
2348 2436 0.846015 TATGTGGCCAGGCAGCTAAT 59.154 50.000 15.19 1.69 0.00 1.73
2349 2437 0.846015 ATATGTGGCCAGGCAGCTAA 59.154 50.000 15.19 0.00 0.00 3.09
2350 2438 0.109153 CATATGTGGCCAGGCAGCTA 59.891 55.000 15.19 0.00 0.00 3.32
2351 2439 1.152819 CATATGTGGCCAGGCAGCT 60.153 57.895 15.19 0.00 0.00 4.24
2352 2440 1.039233 AACATATGTGGCCAGGCAGC 61.039 55.000 15.19 5.59 0.00 5.25
2353 2441 0.742505 CAACATATGTGGCCAGGCAG 59.257 55.000 15.19 0.00 0.00 4.85
2354 2442 0.039472 ACAACATATGTGGCCAGGCA 59.961 50.000 15.19 0.60 41.93 4.75
2355 2443 2.886382 ACAACATATGTGGCCAGGC 58.114 52.632 5.11 1.26 41.93 4.85
2363 2451 5.769662 CCCATGTAATAGGCACAACATATGT 59.230 40.000 1.41 1.41 45.34 2.29
2364 2452 5.769662 ACCCATGTAATAGGCACAACATATG 59.230 40.000 0.00 0.00 31.55 1.78
2365 2453 5.952387 ACCCATGTAATAGGCACAACATAT 58.048 37.500 0.00 0.00 31.55 1.78
2366 2454 5.381184 ACCCATGTAATAGGCACAACATA 57.619 39.130 0.00 0.00 31.55 2.29
2367 2455 4.249638 ACCCATGTAATAGGCACAACAT 57.750 40.909 0.00 0.00 32.91 2.71
2368 2456 3.730215 ACCCATGTAATAGGCACAACA 57.270 42.857 0.00 0.00 0.00 3.33
2369 2457 6.709018 AATAACCCATGTAATAGGCACAAC 57.291 37.500 0.00 0.00 0.00 3.32
2370 2458 8.275758 TCTTAATAACCCATGTAATAGGCACAA 58.724 33.333 0.00 0.00 0.00 3.33
2371 2459 7.807198 TCTTAATAACCCATGTAATAGGCACA 58.193 34.615 0.00 0.00 0.00 4.57
2372 2460 7.390718 CCTCTTAATAACCCATGTAATAGGCAC 59.609 40.741 0.00 0.00 0.00 5.01
2373 2461 7.073215 ACCTCTTAATAACCCATGTAATAGGCA 59.927 37.037 0.00 0.00 0.00 4.75
2374 2462 7.459234 ACCTCTTAATAACCCATGTAATAGGC 58.541 38.462 0.00 0.00 0.00 3.93
2375 2463 8.881262 AGACCTCTTAATAACCCATGTAATAGG 58.119 37.037 0.00 0.00 0.00 2.57
2376 2464 9.712305 CAGACCTCTTAATAACCCATGTAATAG 57.288 37.037 0.00 0.00 0.00 1.73
2377 2465 8.154856 GCAGACCTCTTAATAACCCATGTAATA 58.845 37.037 0.00 0.00 0.00 0.98
2378 2466 6.998673 GCAGACCTCTTAATAACCCATGTAAT 59.001 38.462 0.00 0.00 0.00 1.89
2379 2467 6.157994 AGCAGACCTCTTAATAACCCATGTAA 59.842 38.462 0.00 0.00 0.00 2.41
2380 2468 5.665812 AGCAGACCTCTTAATAACCCATGTA 59.334 40.000 0.00 0.00 0.00 2.29
2381 2469 4.475016 AGCAGACCTCTTAATAACCCATGT 59.525 41.667 0.00 0.00 0.00 3.21
2382 2470 5.041191 AGCAGACCTCTTAATAACCCATG 57.959 43.478 0.00 0.00 0.00 3.66
2383 2471 5.685075 CGAAGCAGACCTCTTAATAACCCAT 60.685 44.000 0.00 0.00 0.00 4.00
2384 2472 4.382685 CGAAGCAGACCTCTTAATAACCCA 60.383 45.833 0.00 0.00 0.00 4.51
2385 2473 4.120589 CGAAGCAGACCTCTTAATAACCC 58.879 47.826 0.00 0.00 0.00 4.11
2386 2474 4.120589 CCGAAGCAGACCTCTTAATAACC 58.879 47.826 0.00 0.00 0.00 2.85
2387 2475 4.756502 ACCGAAGCAGACCTCTTAATAAC 58.243 43.478 0.00 0.00 0.00 1.89
2388 2476 5.419788 TGTACCGAAGCAGACCTCTTAATAA 59.580 40.000 0.00 0.00 0.00 1.40
2389 2477 4.951715 TGTACCGAAGCAGACCTCTTAATA 59.048 41.667 0.00 0.00 0.00 0.98
2390 2478 3.767673 TGTACCGAAGCAGACCTCTTAAT 59.232 43.478 0.00 0.00 0.00 1.40
2391 2479 3.057033 GTGTACCGAAGCAGACCTCTTAA 60.057 47.826 0.00 0.00 0.00 1.85
2392 2480 2.490903 GTGTACCGAAGCAGACCTCTTA 59.509 50.000 0.00 0.00 0.00 2.10
2393 2481 1.272769 GTGTACCGAAGCAGACCTCTT 59.727 52.381 0.00 0.00 0.00 2.85
2394 2482 0.889306 GTGTACCGAAGCAGACCTCT 59.111 55.000 0.00 0.00 0.00 3.69
2395 2483 0.108756 GGTGTACCGAAGCAGACCTC 60.109 60.000 0.00 0.00 0.00 3.85
2396 2484 1.542187 GGGTGTACCGAAGCAGACCT 61.542 60.000 0.00 0.00 36.71 3.85
2397 2485 1.079336 GGGTGTACCGAAGCAGACC 60.079 63.158 0.00 0.00 36.71 3.85
2398 2486 1.079336 GGGGTGTACCGAAGCAGAC 60.079 63.158 0.00 0.00 41.60 3.51
2399 2487 2.288025 GGGGGTGTACCGAAGCAGA 61.288 63.158 0.00 0.00 41.60 4.26
2400 2488 2.267961 GGGGGTGTACCGAAGCAG 59.732 66.667 0.00 0.00 41.60 4.24
2417 2505 5.221165 CCCAAAATGCCCTTATACGTTAAGG 60.221 44.000 20.62 20.62 42.78 2.69
2418 2506 5.735070 GCCCAAAATGCCCTTATACGTTAAG 60.735 44.000 0.00 1.90 0.00 1.85
2419 2507 4.098196 GCCCAAAATGCCCTTATACGTTAA 59.902 41.667 0.00 0.00 0.00 2.01
2420 2508 3.633065 GCCCAAAATGCCCTTATACGTTA 59.367 43.478 0.00 0.00 0.00 3.18
2421 2509 2.429250 GCCCAAAATGCCCTTATACGTT 59.571 45.455 0.00 0.00 0.00 3.99
2422 2510 2.028876 GCCCAAAATGCCCTTATACGT 58.971 47.619 0.00 0.00 0.00 3.57
2423 2511 2.028130 TGCCCAAAATGCCCTTATACG 58.972 47.619 0.00 0.00 0.00 3.06
2424 2512 4.320935 CGTATGCCCAAAATGCCCTTATAC 60.321 45.833 0.00 0.00 0.00 1.47
2425 2513 3.823873 CGTATGCCCAAAATGCCCTTATA 59.176 43.478 0.00 0.00 0.00 0.98
2426 2514 2.627699 CGTATGCCCAAAATGCCCTTAT 59.372 45.455 0.00 0.00 0.00 1.73
2427 2515 2.028130 CGTATGCCCAAAATGCCCTTA 58.972 47.619 0.00 0.00 0.00 2.69
2428 2516 0.823460 CGTATGCCCAAAATGCCCTT 59.177 50.000 0.00 0.00 0.00 3.95
2429 2517 1.042559 CCGTATGCCCAAAATGCCCT 61.043 55.000 0.00 0.00 0.00 5.19
2430 2518 1.326951 ACCGTATGCCCAAAATGCCC 61.327 55.000 0.00 0.00 0.00 5.36
2431 2519 0.179113 CACCGTATGCCCAAAATGCC 60.179 55.000 0.00 0.00 0.00 4.40
2432 2520 3.344064 CACCGTATGCCCAAAATGC 57.656 52.632 0.00 0.00 0.00 3.56
2441 2529 5.874239 CGAGATACGTTAAGCACCGTATGC 61.874 50.000 12.06 0.73 46.82 3.14
2442 2530 3.662645 CGAGATACGTTAAGCACCGTATG 59.337 47.826 12.06 0.00 46.82 2.39
2444 2532 2.539547 GCGAGATACGTTAAGCACCGTA 60.540 50.000 0.00 0.00 42.95 4.02
2445 2533 1.796617 GCGAGATACGTTAAGCACCGT 60.797 52.381 0.00 0.00 44.60 4.83
2446 2534 0.844503 GCGAGATACGTTAAGCACCG 59.155 55.000 0.00 0.00 44.60 4.94
2447 2535 0.844503 CGCGAGATACGTTAAGCACC 59.155 55.000 0.00 0.00 44.60 5.01
2448 2536 0.226484 GCGCGAGATACGTTAAGCAC 59.774 55.000 12.10 0.00 44.60 4.40
2449 2537 0.868602 GGCGCGAGATACGTTAAGCA 60.869 55.000 12.10 0.00 44.60 3.91
2450 2538 1.844663 GGCGCGAGATACGTTAAGC 59.155 57.895 12.10 0.00 44.60 3.09
2451 2539 0.590732 ACGGCGCGAGATACGTTAAG 60.591 55.000 12.10 0.00 44.60 1.85
2452 2540 0.655208 TACGGCGCGAGATACGTTAA 59.345 50.000 12.10 0.00 44.60 2.01
2453 2541 0.867746 ATACGGCGCGAGATACGTTA 59.132 50.000 12.10 1.96 44.60 3.18
2454 2542 0.659417 CATACGGCGCGAGATACGTT 60.659 55.000 12.10 0.59 44.60 3.99
2455 2543 1.082300 CATACGGCGCGAGATACGT 60.082 57.895 12.10 14.07 44.60 3.57
2456 2544 2.426183 GCATACGGCGCGAGATACG 61.426 63.158 12.10 8.23 45.66 3.06
2457 2545 3.449042 GCATACGGCGCGAGATAC 58.551 61.111 12.10 0.00 0.00 2.24
2469 2557 2.280524 TATGGGCACGCCGCATAC 60.281 61.111 12.48 0.00 44.36 2.39
2470 2558 2.280524 GTATGGGCACGCCGCATA 60.281 61.111 12.48 12.48 44.36 3.14
2474 2562 2.971428 CTACCTGTATGGGCACGCCG 62.971 65.000 1.14 0.00 41.11 6.46
2475 2563 1.227556 CTACCTGTATGGGCACGCC 60.228 63.158 0.00 0.00 41.11 5.68
2476 2564 0.249489 CTCTACCTGTATGGGCACGC 60.249 60.000 0.00 0.00 41.11 5.34
2477 2565 0.249489 GCTCTACCTGTATGGGCACG 60.249 60.000 0.00 0.00 41.11 5.34
2478 2566 0.106894 GGCTCTACCTGTATGGGCAC 59.893 60.000 0.00 0.00 41.11 5.01
2479 2567 1.399744 CGGCTCTACCTGTATGGGCA 61.400 60.000 0.00 0.00 41.11 5.36
2480 2568 1.113517 TCGGCTCTACCTGTATGGGC 61.114 60.000 0.00 0.00 41.11 5.36
2481 2569 0.962489 CTCGGCTCTACCTGTATGGG 59.038 60.000 0.00 0.00 41.11 4.00
2482 2570 0.315568 GCTCGGCTCTACCTGTATGG 59.684 60.000 0.00 0.00 42.93 2.74
2483 2571 0.039978 CGCTCGGCTCTACCTGTATG 60.040 60.000 0.00 0.00 35.61 2.39
2484 2572 1.797211 GCGCTCGGCTCTACCTGTAT 61.797 60.000 0.00 0.00 39.11 2.29
2485 2573 2.478890 GCGCTCGGCTCTACCTGTA 61.479 63.158 0.00 0.00 39.11 2.74
2486 2574 3.827898 GCGCTCGGCTCTACCTGT 61.828 66.667 0.00 0.00 39.11 4.00
2487 2575 3.826754 TGCGCTCGGCTCTACCTG 61.827 66.667 9.73 0.00 44.05 4.00
2488 2576 3.827898 GTGCGCTCGGCTCTACCT 61.828 66.667 9.73 0.00 44.05 3.08
2516 2604 4.664677 ATGCGAGCCGGCCGTATC 62.665 66.667 29.37 19.79 0.00 2.24
2517 2605 4.664677 GATGCGAGCCGGCCGTAT 62.665 66.667 29.90 29.90 35.19 3.06
2521 2609 4.971125 GGTAGATGCGAGCCGGCC 62.971 72.222 26.15 14.23 0.00 6.13
2522 2610 4.971125 GGGTAGATGCGAGCCGGC 62.971 72.222 21.89 21.89 0.00 6.13
2523 2611 4.301027 GGGGTAGATGCGAGCCGG 62.301 72.222 0.00 0.00 35.18 6.13
2524 2612 4.301027 GGGGGTAGATGCGAGCCG 62.301 72.222 0.00 0.00 35.18 5.52
2525 2613 2.844839 AGGGGGTAGATGCGAGCC 60.845 66.667 0.00 0.00 0.00 4.70
2526 2614 2.737830 GAGGGGGTAGATGCGAGC 59.262 66.667 0.00 0.00 0.00 5.03
2527 2615 2.210711 GGGAGGGGGTAGATGCGAG 61.211 68.421 0.00 0.00 0.00 5.03
2528 2616 2.122989 GGGAGGGGGTAGATGCGA 60.123 66.667 0.00 0.00 0.00 5.10
2529 2617 3.616721 CGGGAGGGGGTAGATGCG 61.617 72.222 0.00 0.00 0.00 4.73
2530 2618 2.446036 ACGGGAGGGGGTAGATGC 60.446 66.667 0.00 0.00 0.00 3.91
2531 2619 2.201022 CGACGGGAGGGGGTAGATG 61.201 68.421 0.00 0.00 0.00 2.90
2532 2620 2.197875 CGACGGGAGGGGGTAGAT 59.802 66.667 0.00 0.00 0.00 1.98
2533 2621 4.828296 GCGACGGGAGGGGGTAGA 62.828 72.222 0.00 0.00 0.00 2.59
2539 2627 3.869473 TTTTCACGCGACGGGAGGG 62.869 63.158 15.93 7.68 41.43 4.30
2540 2628 1.957186 TTTTTCACGCGACGGGAGG 60.957 57.895 15.93 10.14 41.43 4.30
2541 2629 3.632700 TTTTTCACGCGACGGGAG 58.367 55.556 15.93 11.12 41.43 4.30
2574 2662 2.322999 GAATGGGCCGCGTGATCAAC 62.323 60.000 4.92 0.00 0.00 3.18
2575 2663 2.045438 AATGGGCCGCGTGATCAA 60.045 55.556 4.92 0.00 0.00 2.57
2576 2664 2.513666 GAATGGGCCGCGTGATCA 60.514 61.111 4.92 0.00 0.00 2.92
2577 2665 3.279875 GGAATGGGCCGCGTGATC 61.280 66.667 4.92 0.00 0.00 2.92
2578 2666 3.636929 TTGGAATGGGCCGCGTGAT 62.637 57.895 4.92 0.00 0.00 3.06
2579 2667 4.337177 TTGGAATGGGCCGCGTGA 62.337 61.111 4.92 0.00 0.00 4.35
2580 2668 4.114997 GTTGGAATGGGCCGCGTG 62.115 66.667 4.92 0.00 0.00 5.34
2583 2671 3.810896 GACGTTGGAATGGGCCGC 61.811 66.667 0.00 0.00 0.00 6.53
2584 2672 3.496131 CGACGTTGGAATGGGCCG 61.496 66.667 0.00 0.00 0.00 6.13
2585 2673 3.810896 GCGACGTTGGAATGGGCC 61.811 66.667 4.64 0.00 0.00 5.80
2586 2674 3.810896 GGCGACGTTGGAATGGGC 61.811 66.667 4.64 0.00 0.00 5.36
2587 2675 3.131478 GGGCGACGTTGGAATGGG 61.131 66.667 4.64 0.00 0.00 4.00
2588 2676 3.131478 GGGGCGACGTTGGAATGG 61.131 66.667 4.64 0.00 0.00 3.16
2589 2677 3.496131 CGGGGCGACGTTGGAATG 61.496 66.667 4.64 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.